📓 Jon's Lab Notebook

2020 November 23 • Monday ‒ 2020 November 25 • Wednesday

Difference between niworkflows and C-PAC niworkflows

niworkflows

C-PAC niworkflows

I don’t see anything obviously hanging.

One level higher workflow just adds an input and output node:

C-PAC skullstrip

Original niworkflows-ants was refactored in September…


Extra parameters for C-PAC niworkflows-ants:

tpl_target_path

tpl_target_path, common_spec = get_template_specs(
    in_template, template_spec=template_spec
)

tpl_mask_path

# Get probabilistic brain mask if available
tpl_mask_path = get_template(
    in_template, label="brain", suffix="probseg", **common_spec
) or get_template(in_template, desc="brain", suffix="mask", **common_spec)

tpl_regmask_path

# Try to find a registration mask, set if available
tpl_regmask_path = get_template(
    in_template, desc="BrainCerebellumExtraction", suffix="mask", **common_spec
)

After monkeypatching: C-PAC niworkflows after monkeypatching

C-PAC niworkflows after monkeypatching: one level up (skullstrip_anatomical)

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