mkdir: cannot create directory ‘/rigel/psych/users/av2902/sb_cpac/preproc/’: File exists
[33mWARNING:[0m skipping mount of /rigel/psych/users/av2902/sb_cpac/scratch: no such file or directory
Running BIDS validator
#### Running C-PAC for sub-181
Number of participants to run in parallel: 1
Input directory: /bids_dataset
Output directory: /outputs/output
Working directory: /outputs/tmp
Crash directory: /outputs/crash
Log directory: /outputs/log
Remove working directory: False
Available memory: 100.0 (GB)
Available threads: 1
Number of threads for ANTs: 1
Parsing /bids_dataset..
Starting participant level processing
Run called with config file /outputs/cpac_pipeline_config_2020-11-12T21-57-18Z.yml
201112-21:57:30,297 nipype.workflow INFO:
C-PAC version: 1.7.2
Setting maximum number of cores per participant to 1
Setting number of participants at once to 1
Setting OMP_NUM_THREADS to 1
Setting MKL_NUM_THREADS to 1
Setting ANTS/ITK thread usage to 1
Maximum potential number of cores that might be used during this run: 1
201112-21:57:36,915 nipype.workflow INFO:
Pipeline building completed.
201112-21:57:36,915 nipype.workflow INFO:
Strategy forks:
- cpac_fmriprep-options
201112-21:57:39,683 nipype.workflow INFO:
Workflow resting_preproc_sub-181_ses-1 settings: ['check', 'execution', 'logging', 'monitoring']
201112-21:57:40,895 nipype.workflow INFO:
Running serially.
201112-21:57:40,904 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_tgng_run-3/select_scan_params".
201112-21:57:40,937 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-21:57:41,187 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.select_scan_params".
201112-21:57:41,200 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_tgng_run-3/s3_scan_params".
201112-21:57:41,210 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-21:57:41,444 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.s3_scan_params".
201112-21:57:41,447 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.scan_params_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/scan_params_0".
201112-21:57:41,457 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-21:57:41,698 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.scan_params_0".
201112-21:57:41,701 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_tgng_run-3/selectrest".
201112-21:57:41,733 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-21:57:41,968 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.selectrest".
201112-21:57:41,978 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_tgng_run-3/check_for_s3".
201112-21:57:41,983 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-21:57:42,322 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.check_for_s3".
201112-21:57:42,324 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-181_ses-1/edit_func_0/_scan_tgng_run-3/func_get_idx".
201112-21:57:42,330 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-21:57:42,575 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.edit_func_0.func_get_idx".
201112-21:57:42,577 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-181_ses-1/edit_func_0/_scan_tgng_run-3/func_drop_trs".
201112-21:57:42,584 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-181/ses-1/func/sub-181_ses-1_task-tgng_run-3_bold.nii.gz[0..129] -expr "a" -prefix sub-181_ses-1_task-tgng_run-3_bold_calc.nii.gz
201112-21:57:42,853 nipype.interface INFO:
stderr 2020-11-12T21:57:42.853359:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-21:57:42,854 nipype.interface INFO:
stderr 2020-11-12T21:57:42.854480:++ Authored by: A cast of thousands
201112-21:57:48,679 nipype.interface INFO:
stderr 2020-11-12T21:57:48.678937:++ Output dataset ./sub-181_ses-1_task-tgng_run-3_bold_calc.nii.gz
201112-21:57:48,893 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.edit_func_0.func_drop_trs".
201112-21:57:48,895 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique".
201112-21:57:48,948 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-181_ses-1_task-tgng_run-3_bold_calc.nii.gz
201112-21:57:49,444 nipype.interface INFO:
stderr 2020-11-12T21:57:49.444586:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-21:57:49,445 nipype.interface INFO:
stderr 2020-11-12T21:57:49.445097:++ Authored by: RW Cox
201112-21:57:49,463 nipype.interface INFO:
stderr 2020-11-12T21:57:49.462970:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-181_ses-1_task-tgng_run-3_bold_calc.nii.gz
201112-21:57:49,463 nipype.interface INFO:
stderr 2020-11-12T21:57:49.463876: + deoblique
201112-21:57:49,464 nipype.interface INFO:
stderr 2020-11-12T21:57:49.464074: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-181_ses-1_task-tgng_run-3_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-181_ses-1_task-tgng_run-3_bold_calc.nii.gz in NIFTI storage)
201112-21:57:53,218 nipype.interface INFO:
stderr 2020-11-12T21:57:53.218853:++ 3drefit processed 1 datasets
201112-21:57:53,416 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-21:57:53,418 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient".
201112-21:57:53,424 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-1_task-tgng_run-3_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient/sub-181_ses-1_task-tgng_run-3_bold_calc.nii.gz
201112-21:57:57,892 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-21:57:57,893 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI".
201112-21:57:57,900 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-3_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI/sub-181_ses-1_task-tgng_run-3_bold_calc_resample.nii.gz
201112-21:57:58,274 nipype.interface INFO:
stderr 2020-11-12T21:57:58.274391:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-21:57:58,274 nipype.interface INFO:
stderr 2020-11-12T21:57:58.274883:++ Authored by: KR Hammett & RW Cox
201112-21:57:58,774 nipype.interface INFO:
stderr 2020-11-12T21:57:58.774365:++ Output dataset ./sub-181_ses-1_task-tgng_run-3_bold_calc_resample_tstat.nii.gz
201112-21:57:58,946 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-21:57:58,947 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_generate_ref".
201112-21:57:58,954 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-1_task-tgng_run-3_bold_calc_resample.1D -1Dmatrix_save sub-181_ses-1_task-tgng_run-3_bold_calc_resample.aff12.1D -prefix sub-181_ses-1_task-tgng_run-3_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI/sub-181_ses-1_task-tgng_run-3_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-1_task-tgng_run-3_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_generate_ref/sub-181_ses-1_task-tgng_run-3_bold_calc_resample.nii.gz
201112-21:57:59,225 nipype.interface INFO:
stderr 2020-11-12T21:57:59.225371:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-21:57:59,225 nipype.interface INFO:
stderr 2020-11-12T21:57:59.225948:++ Authored by: RW Cox
201112-21:57:59,245 nipype.interface INFO:
stderr 2020-11-12T21:57:59.245908:++ Coarse del was 10, replaced with 3
201112-21:59:48,837 nipype.interface INFO:
stderr 2020-11-12T21:59:48.836885:++ Max displacement in automask = 0.69 (mm) at sub-brick 5
201112-21:59:48,837 nipype.interface INFO:
stderr 2020-11-12T21:59:48.837746:++ Max delta displ in automask = 0.29 (mm) at sub-brick 108
201112-21:59:52,530 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-21:59:52,532 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion".
201112-21:59:52,539 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-3_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion/sub-181_ses-1_task-tgng_run-3_bold_calc_resample_volreg.nii.gz
201112-21:59:52,787 nipype.interface INFO:
stderr 2020-11-12T21:59:52.787902:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-21:59:52,788 nipype.interface INFO:
stderr 2020-11-12T21:59:52.788331:++ Authored by: KR Hammett & RW Cox
201112-21:59:53,275 nipype.interface INFO:
stderr 2020-11-12T21:59:53.275236:++ Output dataset ./sub-181_ses-1_task-tgng_run-3_bold_calc_resample_volreg_tstat.nii.gz
201112-21:59:53,450 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-21:59:53,452 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt".
201112-21:59:53,460 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient/sub-181_ses-1_task-tgng_run-3_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt/sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion/sub-181_ses-1_task-tgng_run-3_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:00:18,30 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:00:18,39 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/calculate_FDJ".
201112-22:00:18,45 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:00:18,282 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:00:18,283 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_frame_wise_displacement_jenkinson".
201112-22:00:18,290 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:00:18,523 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_jenkinson".
201112-22:00:18,525 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_max_displacement".
201112-22:00:18,533 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:00:18,763 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_max_displacement".
201112-22:00:18,765 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_coordinate_transformation".
201112-22:00:18,785 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:00:19,53 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_coordinate_transformation".
201112-22:00:19,64 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull".
201112-22:00:19,71 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull/sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf.nii.gz
201112-22:00:19,323 nipype.interface INFO:
stderr 2020-11-12T22:00:19.322938:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:00:19,323 nipype.interface INFO:
stderr 2020-11-12T22:00:19.323454:++ Authored by: KR Hammett & RW Cox
201112-22:00:19,853 nipype.interface INFO:
stderr 2020-11-12T22:00:19.853399:++ Output dataset ./sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat.nii.gz
201112-22:00:20,33 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:00:20,34 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass".
201112-22:00:20,41 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull/sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:00:22,108 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:00:22,111 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate".
201112-22:00:22,117 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate/sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:00:22,821 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:00:22,823 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_mask".
201112-22:00:22,828 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate/sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_mask/sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:00:23,292 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:00:23,294 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/unifize".
201112-22:00:23,300 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/unifize/sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:00:23,623 nipype.interface INFO:
stderr 2020-11-12T22:00:23.623481:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:01:44,230 nipype.interface INFO:
stderr 2020-11-12T22:01:44.230717: + Pre-processing: IAV..UW[s5026]Im
201112-22:01:44,249 nipype.interface INFO:
stderr 2020-11-12T22:01:44.249063:++ Output dataset ./uni.nii.gz
201112-22:01:44,249 nipype.interface INFO:
stderr 2020-11-12T22:01:44.249290:++ ===== Elapsed = 80.6 sec
201112-22:01:44,434 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:01:44,436 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass".
201112-22:01:44,443 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:01:44,879 nipype.interface INFO:
stderr 2020-11-12T22:01:44.879255:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:01:44,879 nipype.interface INFO:
stderr 2020-11-12T22:01:44.879714:++ Authored by: Emperor Zhark
201112-22:01:44,892 nipype.interface INFO:
stderr 2020-11-12T22:01:44.892389:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:01:44,896 nipype.interface INFO:
stderr 2020-11-12T22:01:44.896113:++ Forming automask
201112-22:01:44,899 nipype.interface INFO:
stderr 2020-11-12T22:01:44.899642: + Fixed clip level = 421.470093
201112-22:01:44,905 nipype.interface INFO:
stderr 2020-11-12T22:01:44.904980: + Used gradual clip level = 345.985748 .. 471.214661
201112-22:01:44,905 nipype.interface INFO:
stderr 2020-11-12T22:01:44.905211: + Number voxels above clip level = 34006
201112-22:01:44,905 nipype.interface INFO:
stderr 2020-11-12T22:01:44.905387: + Clustering voxels ...
201112-22:01:44,906 nipype.interface INFO:
stderr 2020-11-12T22:01:44.906578: + Largest cluster has 33998 voxels
201112-22:01:44,908 nipype.interface INFO:
stderr 2020-11-12T22:01:44.908027: + Clustering voxels ...
201112-22:01:44,909 nipype.interface INFO:
stderr 2020-11-12T22:01:44.909199: + Largest cluster has 33323 voxels
201112-22:01:44,912 nipype.interface INFO:
stderr 2020-11-12T22:01:44.912578: + Filled 1034 voxels in small holes; now have 34357 voxels
201112-22:01:44,915 nipype.interface INFO:
stderr 2020-11-12T22:01:44.915045: + Filled 6 voxels in large holes; now have 34363 voxels
201112-22:01:44,916 nipype.interface INFO:
stderr 2020-11-12T22:01:44.916362: + Clustering voxels ...
201112-22:01:44,917 nipype.interface INFO:
stderr 2020-11-12T22:01:44.917531: + Largest cluster has 34359 voxels
201112-22:01:44,917 nipype.interface INFO:
stderr 2020-11-12T22:01:44.917762: + Clustering non-brain voxels ...
201112-22:01:44,917 nipype.interface INFO:
stderr 2020-11-12T22:01:44.917906: + Clustering voxels ...
201112-22:01:44,920 nipype.interface INFO:
stderr 2020-11-12T22:01:44.920756: + Largest cluster has 104702 voxels
201112-22:01:44,921 nipype.interface INFO:
stderr 2020-11-12T22:01:44.921088: + Mask now has 34562 voxels
201112-22:01:44,921 nipype.interface INFO:
stderr 2020-11-12T22:01:44.921246:++ Dilating automask
201112-22:01:44,930 nipype.interface INFO:
stderr 2020-11-12T22:01:44.930278: + Clustering voxels ...
201112-22:01:44,932 nipype.interface INFO:
stderr 2020-11-12T22:01:44.932623: + Largest cluster has 98090 voxels
201112-22:01:44,932 nipype.interface INFO:
stderr 2020-11-12T22:01:44.932965:++ 41174 voxels in the mask [out of 139264: 29.57%]
201112-22:01:44,933 nipype.interface INFO:
stderr 2020-11-12T22:01:44.933136:++ first 9 x-planes are zero [from R]
201112-22:01:44,933 nipype.interface INFO:
stderr 2020-11-12T22:01:44.933294:++ last 8 x-planes are zero [from L]
201112-22:01:44,933 nipype.interface INFO:
stderr 2020-11-12T22:01:44.933428:++ first 0 y-planes are zero [from P]
201112-22:01:44,933 nipype.interface INFO:
stderr 2020-11-12T22:01:44.933578:++ last 8 y-planes are zero [from A]
201112-22:01:44,933 nipype.interface INFO:
stderr 2020-11-12T22:01:44.933718:++ first 1 z-planes are zero [from I]
201112-22:01:44,933 nipype.interface INFO:
stderr 2020-11-12T22:01:44.933853:++ last 0 z-planes are zero [from S]
201112-22:01:44,939 nipype.interface INFO:
stderr 2020-11-12T22:01:44.939815:++ Output dataset ./uni_mask.nii.gz
201112-22:01:44,940 nipype.interface INFO:
stderr 2020-11-12T22:01:44.940045:++ applying mask to original data
201112-22:01:44,941 nipype.interface INFO:
stderr 2020-11-12T22:01:44.940990:++ Writing masked data
201112-22:01:44,956 nipype.interface INFO:
stderr 2020-11-12T22:01:44.956460:++ Output dataset ./uni_masked.nii.gz
201112-22:01:44,956 nipype.interface INFO:
stderr 2020-11-12T22:01:44.956869:++ CPU time = 0.000000 sec
201112-22:01:45,132 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:01:45,134 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks".
201112-22:01:45,141 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:01:45,579 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:01:45,580 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/cal_DVARS".
201112-22:01:45,588 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-22:01:46,429 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-22:01:46,431 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_extract_brain".
201112-22:01:46,439 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt/sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc.nii.gz
201112-22:01:46,693 nipype.interface INFO:
stderr 2020-11-12T22:01:46.693870:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:01:46,694 nipype.interface INFO:
stderr 2020-11-12T22:01:46.694388:++ Authored by: A cast of thousands
201112-22:01:49,571 nipype.interface INFO:
stderr 2020-11-12T22:01:49.570991:++ Output dataset ./sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc.nii.gz
201112-22:01:49,784 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:01:49,785 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize".
201112-22:01:49,793 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_extract_brain/sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize/sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-22:01:52,143 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:01:52,145 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mask_normalize".
201112-22:01:52,152 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize/sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mask_normalize/sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:01:53,237 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:01:53,239 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean".
201112-22:01:53,245 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean/sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc.nii.gz
201112-22:01:53,504 nipype.interface INFO:
stderr 2020-11-12T22:01:53.504807:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:01:53,505 nipype.interface INFO:
stderr 2020-11-12T22:01:53.505434:++ Authored by: KR Hammett & RW Cox
201112-22:01:53,821 nipype.interface INFO:
stderr 2020-11-12T22:01:53.821576:++ Output dataset ./sub-181_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-22:01:54,26 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:01:54,27 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/norm_motion_params".
201112-22:01:54,34 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:01:54,272 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:01:54,274 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_motion_0/_scan_tgng_run-3/motion_plot".
201112-22:01:54,278 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-22:01:54,913 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_motion_0.motion_plot".
201112-22:01:54,915 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_qc___movement_trans_plot".
201112-22:01:54,924 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:01:55,138 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___movement_trans_plot/_scan_tgng_run-3/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/movement_trans_plot/_scan_tgng_run-3/motion_trans_plot.png
201112-22:01:55,161 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_trans_plot".
201112-22:01:55,163 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_qc___movement_rot_plot".
201112-22:01:55,171 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:01:55,382 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___movement_rot_plot/_scan_tgng_run-3/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/movement_rot_plot/_scan_tgng_run-3/motion_rot_plot.png
201112-22:01:55,406 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_rot_plot".
201112-22:01:55,408 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/calc_motion_parameters".
201112-22:01:55,415 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:01:55,655 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-22:01:55,657 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_motion_params".
201112-22:01:55,665 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:01:55,899 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_params".
201112-22:01:55,901 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/calculate_FD".
201112-22:01:55,905 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-22:01:56,139 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-22:01:56,140 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_frame_wise_displacement_power".
201112-22:01:56,147 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:01:56,384 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_power".
201112-22:01:56,386 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/calc_power_parameters".
201112-22:01:56,391 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:01:56,628 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-22:01:56,631 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_power_params".
201112-22:01:56,638 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:01:56,871 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_power_params".
201112-22:01:56,873 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_movement_parameters".
201112-22:01:56,880 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:01:57,116 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_movement_parameters".
201112-22:01:57,118 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/func_despiked_0".
201112-22:01:57,123 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-181_ses-1_task-tgng_run-3_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/func_despiked_0/sub-181_ses-1_task-tgng_run-3_bold_calc.nii.gz
201112-22:01:57,506 nipype.interface INFO:
stderr 2020-11-12T22:01:57.506012:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:01:57,506 nipype.interface INFO:
stderr 2020-11-12T22:01:57.506543:++ Authored by: RW Cox
201112-22:01:57,520 nipype.interface INFO:
stderr 2020-11-12T22:01:57.520056:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:01:57,520 nipype.interface INFO:
stderr 2020-11-12T22:01:57.520056: such as /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/func_despiked_0/sub-181_ses-1_task-tgng_run-3_bold_calc.nii.gz,
201112-22:01:57,520 nipype.interface INFO:
stderr 2020-11-12T22:01:57.520056: or viewing/combining it with volumes of differing obliquity,
201112-22:01:57,520 nipype.interface INFO:
stderr 2020-11-12T22:01:57.520056: you should consider running:
201112-22:01:57,520 nipype.interface INFO:
stderr 2020-11-12T22:01:57.520056: 3dWarp -deoblique
201112-22:01:57,520 nipype.interface INFO:
stderr 2020-11-12T22:01:57.520056: on this and other oblique datasets in the same session.
201112-22:01:57,520 nipype.interface INFO:
stderr 2020-11-12T22:01:57.520056: See 3dWarp -help for details.
201112-22:01:57,520 nipype.interface INFO:
stderr 2020-11-12T22:01:57.520965:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/func_despiked_0/sub-181_ses-1_task-tgng_run-3_bold_calc.nii.gz is 28.005903 degrees from plumb.
201112-22:01:57,521 nipype.interface INFO:
stderr 2020-11-12T22:01:57.521158:++ Input dataset is in short format, but output will be in float format
201112-22:01:57,521 nipype.interface INFO:
stderr 2020-11-12T22:01:57.521328:++ ignoring first 0 time points, using last 130
201112-22:01:57,521 nipype.interface INFO:
stderr 2020-11-12T22:01:57.521496:++ using 130 time points => -corder 4
201112-22:01:57,521 nipype.interface INFO:
stderr 2020-11-12T22:01:57.521661:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/func_despiked_0/sub-181_ses-1_task-tgng_run-3_bold_calc.nii.gz
201112-22:01:58,22 nipype.interface INFO:
stderr 2020-11-12T22:01:58.022823:++ 39085 voxels in the automask [out of 139264 in dataset]
201112-22:01:58,28 nipype.interface INFO:
stderr 2020-11-12T22:01:58.028313:++ 64918 voxels in the dilated automask [out of 139264 in dataset]
201112-22:01:58,40 nipype.interface INFO:
stderr 2020-11-12T22:01:58.040504:++ Procesing time series with OLD model fit algorithm
201112-22:01:58,40 nipype.interface INFO:
stderr 2020-11-12T22:01:58.040850:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-22:01:58,41 nipype.interface INFO:
stderr 2020-11-12T22:01:58.041024: + [ 3.457% .. 0.072% of normal distribution]
201112-22:01:58,42 nipype.interface INFO:
stderr 2020-11-12T22:01:58.042235: + [ 8.839% .. 3.125% of Laplace distribution]
201112-22:01:58,42 nipype.interface INFO:
stderr 2020-11-12T22:01:58.042427:++ start OpenMP thread #0
201112-22:02:04,484 nipype.interface INFO:
stderr 2020-11-12T22:02:04.484189:...........................
201112-22:02:04,485 nipype.interface INFO:
stderr 2020-11-12T22:02:04.485092:++ Elapsed despike time = 6s 443ms
201112-22:02:04,485 nipype.interface INFO:
stderr 2020-11-12T22:02:04.485092:
201112-22:02:04,485 nipype.interface INFO:
stderr 2020-11-12T22:02:04.485850:++ FINAL: 8439340 data points, 538736 edits [6.384%], 54972 big edits [0.651%]
201112-22:02:09,134 nipype.interface INFO:
stderr 2020-11-12T22:02:09.134718:++ Output dataset ./sub-181_ses-1_task-tgng_run-3_bold_calc_despike.nii.gz
201112-22:02:09,363 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_despiked_0".
201112-22:02:09,365 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_tgng_run-3/slice_timing".
201112-22:02:09,374 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:02:09,375 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_tgng_run-3/slice_timing/sub-181_ses-1_task-tgng_run-3_bold_calc_despike.nii.gz
201112-22:02:09,590 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:02:09,820 nipype.interface INFO:
stderr 2020-11-12T22:02:09.820701:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:02:09,834 nipype.interface INFO:
stderr 2020-11-12T22:02:09.834349:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:02:09,834 nipype.interface INFO:
stderr 2020-11-12T22:02:09.834349: such as /outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_tgng_run-3/slice_timing/sub-181_ses-1_task-tgng_run-3_bold_calc_despike.nii.gz,
201112-22:02:09,834 nipype.interface INFO:
stderr 2020-11-12T22:02:09.834349: or viewing/combining it with volumes of differing obliquity,
201112-22:02:09,834 nipype.interface INFO:
stderr 2020-11-12T22:02:09.834349: you should consider running:
201112-22:02:09,834 nipype.interface INFO:
stderr 2020-11-12T22:02:09.834349: 3dWarp -deoblique
201112-22:02:09,835 nipype.interface INFO:
stderr 2020-11-12T22:02:09.834349: on this and other oblique datasets in the same session.
201112-22:02:09,835 nipype.interface INFO:
stderr 2020-11-12T22:02:09.834349: See 3dWarp -help for details.
201112-22:02:09,835 nipype.interface INFO:
stderr 2020-11-12T22:02:09.835225:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_tgng_run-3/slice_timing/sub-181_ses-1_task-tgng_run-3_bold_calc_despike.nii.gz is 28.005903 degrees from plumb.
201112-22:02:14,384 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_slice_timing_correction_0.slice_timing".
201112-22:02:14,386 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique".
201112-22:02:14,451 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift.nii.gz
201112-22:02:14,704 nipype.interface INFO:
stderr 2020-11-12T22:02:14.704681:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:02:14,705 nipype.interface INFO:
stderr 2020-11-12T22:02:14.705378:++ Authored by: RW Cox
201112-22:02:14,727 nipype.interface INFO:
stderr 2020-11-12T22:02:14.727057:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift.nii.gz
201112-22:02:14,727 nipype.interface INFO:
stderr 2020-11-12T22:02:14.727860: + deoblique
201112-22:02:14,728 nipype.interface INFO:
stderr 2020-11-12T22:02:14.728077: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-22:02:17,71 nipype.interface INFO:
stderr 2020-11-12T22:02:17.071040:++ 3drefit processed 1 datasets
201112-22:02:17,270 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:02:17,271 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient".
201112-22:02:17,279 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift.nii.gz
201112-22:02:20,296 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:02:20,298 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI".
201112-22:02:20,305 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample.nii.gz
201112-22:02:20,560 nipype.interface INFO:
stderr 2020-11-12T22:02:20.559977:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:02:20,560 nipype.interface INFO:
stderr 2020-11-12T22:02:20.560420:++ Authored by: KR Hammett & RW Cox
201112-22:02:21,185 nipype.interface INFO:
stderr 2020-11-12T22:02:21.185331:++ Output dataset ./sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-22:02:21,366 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:02:21,367 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_generate_ref".
201112-22:02:21,374 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_generate_ref/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample.nii.gz
201112-22:02:21,634 nipype.interface INFO:
stderr 2020-11-12T22:02:21.634591:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:02:21,635 nipype.interface INFO:
stderr 2020-11-12T22:02:21.635197:++ Authored by: RW Cox
201112-22:02:21,643 nipype.interface INFO:
stderr 2020-11-12T22:02:21.643039:++ Coarse del was 10, replaced with 3
201112-22:04:13,644 nipype.interface INFO:
stderr 2020-11-12T22:04:13.643896:++ Max displacement in automask = 0.68 (mm) at sub-brick 1
201112-22:04:13,645 nipype.interface INFO:
stderr 2020-11-12T22:04:13.645146:++ Max delta displ in automask = 0.25 (mm) at sub-brick 108
201112-22:04:18,852 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:04:18,854 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion".
201112-22:04:18,861 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-22:04:19,118 nipype.interface INFO:
stderr 2020-11-12T22:04:19.118531:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:04:19,119 nipype.interface INFO:
stderr 2020-11-12T22:04:19.119165:++ Authored by: KR Hammett & RW Cox
201112-22:04:19,941 nipype.interface INFO:
stderr 2020-11-12T22:04:19.941334:++ Output dataset ./sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-22:04:20,169 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:04:20,171 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt".
201112-22:04:20,178 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:04:44,825 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:04:44,834 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_motion_correct".
201112-22:04:44,843 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:04:45,73 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_correct".
201112-22:04:45,74 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull".
201112-22:04:45,82 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-22:04:45,336 nipype.interface INFO:
stderr 2020-11-12T22:04:45.336641:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:04:45,337 nipype.interface INFO:
stderr 2020-11-12T22:04:45.337300:++ Authored by: KR Hammett & RW Cox
201112-22:04:46,119 nipype.interface INFO:
stderr 2020-11-12T22:04:46.119160:++ Output dataset ./sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-22:04:46,283 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:04:46,285 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass".
201112-22:04:46,291 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:04:48,163 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:04:48,164 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate".
201112-22:04:48,170 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:04:48,821 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:04:48,822 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_mask".
201112-22:04:48,829 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_mask/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:04:49,254 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:04:49,256 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/unifize".
201112-22:04:49,263 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/unifize/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:04:49,517 nipype.interface INFO:
stderr 2020-11-12T22:04:49.517504:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:06:12,628 nipype.interface INFO:
stderr 2020-11-12T22:06:12.628276: + Pre-processing: IAV..UW[s5030]Im
201112-22:06:12,645 nipype.interface INFO:
stderr 2020-11-12T22:06:12.645131:++ Output dataset ./uni.nii.gz
201112-22:06:12,645 nipype.interface INFO:
stderr 2020-11-12T22:06:12.645614:++ ===== Elapsed = 83.1 sec
201112-22:06:12,857 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:06:12,859 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass".
201112-22:06:12,867 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:06:13,129 nipype.interface INFO:
stderr 2020-11-12T22:06:13.128894:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:06:13,129 nipype.interface INFO:
stderr 2020-11-12T22:06:13.129730:++ Authored by: Emperor Zhark
201112-22:06:13,132 nipype.interface INFO:
stderr 2020-11-12T22:06:13.132469:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:06:13,138 nipype.interface INFO:
stderr 2020-11-12T22:06:13.138234:++ Forming automask
201112-22:06:13,139 nipype.interface INFO:
stderr 2020-11-12T22:06:13.139832: + Fixed clip level = 421.293640
201112-22:06:13,143 nipype.interface INFO:
stderr 2020-11-12T22:06:13.143516: + Used gradual clip level = 346.001038 .. 471.236938
201112-22:06:13,143 nipype.interface INFO:
stderr 2020-11-12T22:06:13.143783: + Number voxels above clip level = 34011
201112-22:06:13,143 nipype.interface INFO:
stderr 2020-11-12T22:06:13.143936: + Clustering voxels ...
201112-22:06:13,145 nipype.interface INFO:
stderr 2020-11-12T22:06:13.145400: + Largest cluster has 34003 voxels
201112-22:06:13,146 nipype.interface INFO:
stderr 2020-11-12T22:06:13.146841: + Clustering voxels ...
201112-22:06:13,148 nipype.interface INFO:
stderr 2020-11-12T22:06:13.148045: + Largest cluster has 33325 voxels
201112-22:06:13,151 nipype.interface INFO:
stderr 2020-11-12T22:06:13.151497: + Filled 1037 voxels in small holes; now have 34362 voxels
201112-22:06:13,153 nipype.interface INFO:
stderr 2020-11-12T22:06:13.153741: + Filled 6 voxels in large holes; now have 34368 voxels
201112-22:06:13,155 nipype.interface INFO:
stderr 2020-11-12T22:06:13.155112: + Clustering voxels ...
201112-22:06:13,156 nipype.interface INFO:
stderr 2020-11-12T22:06:13.156270: + Largest cluster has 34364 voxels
201112-22:06:13,156 nipype.interface INFO:
stderr 2020-11-12T22:06:13.156501: + Clustering non-brain voxels ...
201112-22:06:13,156 nipype.interface INFO:
stderr 2020-11-12T22:06:13.156647: + Clustering voxels ...
201112-22:06:13,159 nipype.interface INFO:
stderr 2020-11-12T22:06:13.159812: + Largest cluster has 104697 voxels
201112-22:06:13,160 nipype.interface INFO:
stderr 2020-11-12T22:06:13.160223: + Mask now has 34567 voxels
201112-22:06:13,160 nipype.interface INFO:
stderr 2020-11-12T22:06:13.160415:++ Dilating automask
201112-22:06:13,169 nipype.interface INFO:
stderr 2020-11-12T22:06:13.169167: + Clustering voxels ...
201112-22:06:13,171 nipype.interface INFO:
stderr 2020-11-12T22:06:13.171806: + Largest cluster has 98075 voxels
201112-22:06:13,172 nipype.interface INFO:
stderr 2020-11-12T22:06:13.172183:++ 41189 voxels in the mask [out of 139264: 29.58%]
201112-22:06:13,172 nipype.interface INFO:
stderr 2020-11-12T22:06:13.172373:++ first 9 x-planes are zero [from R]
201112-22:06:13,172 nipype.interface INFO:
stderr 2020-11-12T22:06:13.172533:++ last 8 x-planes are zero [from L]
201112-22:06:13,172 nipype.interface INFO:
stderr 2020-11-12T22:06:13.172698:++ first 0 y-planes are zero [from P]
201112-22:06:13,172 nipype.interface INFO:
stderr 2020-11-12T22:06:13.172854:++ last 8 y-planes are zero [from A]
201112-22:06:13,173 nipype.interface INFO:
stderr 2020-11-12T22:06:13.173020:++ first 1 z-planes are zero [from I]
201112-22:06:13,173 nipype.interface INFO:
stderr 2020-11-12T22:06:13.173153:++ last 0 z-planes are zero [from S]
201112-22:06:13,178 nipype.interface INFO:
stderr 2020-11-12T22:06:13.178339:++ Output dataset ./uni_mask.nii.gz
201112-22:06:13,178 nipype.interface INFO:
stderr 2020-11-12T22:06:13.178647:++ applying mask to original data
201112-22:06:13,179 nipype.interface INFO:
stderr 2020-11-12T22:06:13.179888:++ Writing masked data
201112-22:06:13,195 nipype.interface INFO:
stderr 2020-11-12T22:06:13.195825:++ Output dataset ./uni_masked.nii.gz
201112-22:06:13,196 nipype.interface INFO:
stderr 2020-11-12T22:06:13.196440:++ CPU time = 0.000000 sec
201112-22:06:13,375 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:06:13,376 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks".
201112-22:06:13,383 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:06:13,827 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:06:13,828 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-22:06:13,836 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-22:06:14,72 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-22:06:14,74 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-22:06:14,81 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:06:14,546 nipype.interface INFO:
stderr 2020-11-12T22:06:14.546079:++ no -frac option: defaulting to -union
201112-22:06:14,546 nipype.interface INFO:
stderr 2020-11-12T22:06:14.546587:++ processing 1 input dataset(s), NN=2...
201112-22:06:14,546 nipype.interface INFO:
stderr 2020-11-12T22:06:14.546744:++ padding all datasets by 0 (for dilations)
201112-22:06:14,560 nipype.interface INFO:
stderr 2020-11-12T22:06:14.560348:++ frac 0 over 1 volumes gives min count 0
201112-22:06:14,560 nipype.interface INFO:
stderr 2020-11-12T22:06:14.560903:++ voxel limits: 0 clipped, 41101 survived, 98163 were zero
201112-22:06:14,561 nipype.interface INFO:
stderr 2020-11-12T22:06:14.561081:++ writing result sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-22:06:14,568 nipype.interface INFO:
stderr 2020-11-12T22:06:14.568679:++ Output dataset ./sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-22:06:14,758 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-22:06:14,760 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_functional_brain_mask".
201112-22:06:14,768 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:06:15,5 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask".
201112-22:06:15,6 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/functional_brain_mask_derivative_0".
201112-22:06:15,11 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-22:06:15,224 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-22:06:15,230 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:06:15,765 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201112-22:06:15,785 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.functional_brain_mask_derivative_0".
201112-22:06:15,786 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_extract_brain".
201112-22:06:15,796 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:06:16,54 nipype.interface INFO:
stderr 2020-11-12T22:06:16.054451:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:06:16,54 nipype.interface INFO:
stderr 2020-11-12T22:06:16.054929:++ Authored by: A cast of thousands
201112-22:06:19,492 nipype.interface INFO:
stderr 2020-11-12T22:06:19.492640:++ Output dataset ./sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:06:19,693 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:06:19,695 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize".
201112-22:06:19,700 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_extract_brain/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-22:06:22,120 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:06:22,122 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-22:06:22,128 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:06:23,173 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_mean".
201112-22:06:23,175 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-22:06:23,181 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:06:23,444 nipype.interface INFO:
stderr 2020-11-12T22:06:23.444399:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:06:23,445 nipype.interface INFO:
stderr 2020-11-12T22:06:23.445169:++ Authored by: KR Hammett & RW Cox
201112-22:06:24,40 nipype.interface INFO:
stderr 2020-11-12T22:06:24.040671:++ Output dataset ./sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:06:24,249 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.functional_mean".
201112-22:06:24,251 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-3/std_dev".
201112-22:06:24,259 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-3/std_dev/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:06:24,512 nipype.interface INFO:
stderr 2020-11-12T22:06:24.512237:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:06:24,512 nipype.interface INFO:
stderr 2020-11-12T22:06:24.512785:++ Authored by: KR Hammett & RW Cox
201112-22:06:25,52 nipype.interface INFO:
stderr 2020-11-12T22:06:25.052793:++ Output dataset ./sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:06:25,239 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev".
201112-22:06:25,241 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_functional_preprocessed".
201112-22:06:25,250 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:06:25,481 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed".
201112-22:06:25,483 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mask_normalize".
201112-22:06:25,490 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mask_normalize/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:06:26,585 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:06:26,586 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_functional_preprocessed_mask".
201112-22:06:26,594 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:06:26,833 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed_mask".
201112-22:06:26,835 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean".
201112-22:06:26,842 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:06:27,103 nipype.interface INFO:
stderr 2020-11-12T22:06:27.103825:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:06:27,104 nipype.interface INFO:
stderr 2020-11-12T22:06:27.104499:++ Authored by: KR Hammett & RW Cox
201112-22:06:27,683 nipype.interface INFO:
stderr 2020-11-12T22:06:27.683780:++ Output dataset ./sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-22:06:27,900 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:06:27,902 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_mean_functional".
201112-22:06:27,911 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:06:28,150 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional".
201112-22:06:28,153 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/norm_motion_params".
201112-22:06:28,161 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:06:28,398 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:06:28,400 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_slice_time_corrected".
201112-22:06:28,408 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:06:28,645 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_slice_time_corrected".
201112-22:06:28,648 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_raw_functional".
201112-22:06:28,659 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:06:29,185 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_raw_functional".
201112-22:06:29,187 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_tgng_run-3/check_func_scan".
201112-22:06:29,219 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:06:29,463 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.check_func_scan".
201112-22:06:29,475 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_tgng_run-2/select_scan_params".
201112-22:06:29,506 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:06:29,750 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.select_scan_params".
201112-22:06:29,762 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_tgng_run-2/s3_scan_params".
201112-22:06:29,771 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:06:30,8 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.s3_scan_params".
201112-22:06:30,11 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.scan_params_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/scan_params_0".
201112-22:06:30,22 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:06:30,256 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.scan_params_0".
201112-22:06:30,258 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_tgng_run-2/selectrest".
201112-22:06:30,291 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:06:30,534 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.selectrest".
201112-22:06:30,545 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_tgng_run-2/check_for_s3".
201112-22:06:30,550 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:06:30,881 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.check_for_s3".
201112-22:06:30,883 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-181_ses-1/edit_func_0/_scan_tgng_run-2/func_get_idx".
201112-22:06:30,889 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:06:31,132 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.edit_func_0.func_get_idx".
201112-22:06:31,134 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-181_ses-1/edit_func_0/_scan_tgng_run-2/func_drop_trs".
201112-22:06:31,142 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-181/ses-1/func/sub-181_ses-1_task-tgng_run-2_bold.nii.gz[0..129] -expr "a" -prefix sub-181_ses-1_task-tgng_run-2_bold_calc.nii.gz
201112-22:06:31,402 nipype.interface INFO:
stderr 2020-11-12T22:06:31.402019:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:06:31,402 nipype.interface INFO:
stderr 2020-11-12T22:06:31.402556:++ Authored by: A cast of thousands
201112-22:06:37,383 nipype.interface INFO:
stderr 2020-11-12T22:06:37.383039:++ Output dataset ./sub-181_ses-1_task-tgng_run-2_bold_calc.nii.gz
201112-22:06:37,592 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.edit_func_0.func_drop_trs".
201112-22:06:37,594 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique".
201112-22:06:37,642 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-181_ses-1_task-tgng_run-2_bold_calc.nii.gz
201112-22:06:37,884 nipype.interface INFO:
stderr 2020-11-12T22:06:37.884227:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:06:37,884 nipype.interface INFO:
stderr 2020-11-12T22:06:37.884650:++ Authored by: RW Cox
201112-22:06:37,896 nipype.interface INFO:
stderr 2020-11-12T22:06:37.896566:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-181_ses-1_task-tgng_run-2_bold_calc.nii.gz
201112-22:06:37,897 nipype.interface INFO:
stderr 2020-11-12T22:06:37.897661: + deoblique
201112-22:06:37,897 nipype.interface INFO:
stderr 2020-11-12T22:06:37.897881: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-181_ses-1_task-tgng_run-2_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-181_ses-1_task-tgng_run-2_bold_calc.nii.gz in NIFTI storage)
201112-22:06:41,923 nipype.interface INFO:
stderr 2020-11-12T22:06:41.922939:++ 3drefit processed 1 datasets
201112-22:06:42,125 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:06:42,127 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient".
201112-22:06:42,134 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-1_task-tgng_run-2_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-181_ses-1_task-tgng_run-2_bold_calc.nii.gz
201112-22:06:46,616 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:06:46,617 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI".
201112-22:06:46,625 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-2_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-181_ses-1_task-tgng_run-2_bold_calc_resample.nii.gz
201112-22:06:46,883 nipype.interface INFO:
stderr 2020-11-12T22:06:46.883600:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:06:46,884 nipype.interface INFO:
stderr 2020-11-12T22:06:46.884377:++ Authored by: KR Hammett & RW Cox
201112-22:06:47,368 nipype.interface INFO:
stderr 2020-11-12T22:06:47.368418:++ Output dataset ./sub-181_ses-1_task-tgng_run-2_bold_calc_resample_tstat.nii.gz
201112-22:06:47,545 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:06:47,546 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref".
201112-22:06:47,553 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-1_task-tgng_run-2_bold_calc_resample.1D -1Dmatrix_save sub-181_ses-1_task-tgng_run-2_bold_calc_resample.aff12.1D -prefix sub-181_ses-1_task-tgng_run-2_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-181_ses-1_task-tgng_run-2_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-1_task-tgng_run-2_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref/sub-181_ses-1_task-tgng_run-2_bold_calc_resample.nii.gz
201112-22:06:47,806 nipype.interface INFO:
stderr 2020-11-12T22:06:47.806619:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:06:47,807 nipype.interface INFO:
stderr 2020-11-12T22:06:47.807139:++ Authored by: RW Cox
201112-22:06:47,817 nipype.interface INFO:
stderr 2020-11-12T22:06:47.817571:++ Coarse del was 10, replaced with 3
201112-22:08:37,5 nipype.interface INFO:
stderr 2020-11-12T22:08:37.005314:++ Max displacement in automask = 0.31 (mm) at sub-brick 122
201112-22:08:37,6 nipype.interface INFO:
stderr 2020-11-12T22:08:37.006354:++ Max delta displ in automask = 0.19 (mm) at sub-brick 72
201112-22:08:40,690 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:08:40,692 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion".
201112-22:08:40,700 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-2_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-181_ses-1_task-tgng_run-2_bold_calc_resample_volreg.nii.gz
201112-22:08:40,957 nipype.interface INFO:
stderr 2020-11-12T22:08:40.957213:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:08:40,957 nipype.interface INFO:
stderr 2020-11-12T22:08:40.957650:++ Authored by: KR Hammett & RW Cox
201112-22:08:41,440 nipype.interface INFO:
stderr 2020-11-12T22:08:41.440601:++ Output dataset ./sub-181_ses-1_task-tgng_run-2_bold_calc_resample_volreg_tstat.nii.gz
201112-22:08:41,601 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:08:41,603 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt".
201112-22:08:41,610 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-181_ses-1_task-tgng_run-2_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-181_ses-1_task-tgng_run-2_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:09:05,806 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:09:05,816 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calculate_FDJ".
201112-22:09:05,823 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:09:06,55 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:09:06,56 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_frame_wise_displacement_jenkinson".
201112-22:09:06,64 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:09:06,299 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_jenkinson".
201112-22:09:06,301 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_max_displacement".
201112-22:09:06,312 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:09:06,546 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_max_displacement".
201112-22:09:06,548 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_coordinate_transformation".
201112-22:09:06,568 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:09:06,838 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_coordinate_transformation".
201112-22:09:06,850 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull".
201112-22:09:06,860 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf.nii.gz
201112-22:09:07,115 nipype.interface INFO:
stderr 2020-11-12T22:09:07.115691:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:09:07,116 nipype.interface INFO:
stderr 2020-11-12T22:09:07.116198:++ Authored by: KR Hammett & RW Cox
201112-22:09:07,646 nipype.interface INFO:
stderr 2020-11-12T22:09:07.646055:++ Output dataset ./sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat.nii.gz
201112-22:09:07,819 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:09:07,821 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass".
201112-22:09:07,827 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:09:09,731 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:09:09,733 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate".
201112-22:09:09,739 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:09:10,442 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:09:10,444 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask".
201112-22:09:10,450 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask/sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:09:10,906 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:09:10,908 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize".
201112-22:09:10,914 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize/sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:09:11,176 nipype.interface INFO:
stderr 2020-11-12T22:09:11.176634:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:31,469 nipype.interface INFO:
stderr 2020-11-12T22:10:31.469769: + Pre-processing: IAV..UW[s4896]Im
201112-22:10:31,487 nipype.interface INFO:
stderr 2020-11-12T22:10:31.487346:++ Output dataset ./uni.nii.gz
201112-22:10:31,487 nipype.interface INFO:
stderr 2020-11-12T22:10:31.487729:++ ===== Elapsed = 80.3 sec
201112-22:10:31,684 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:10:31,686 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass".
201112-22:10:31,694 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:10:31,954 nipype.interface INFO:
stderr 2020-11-12T22:10:31.954531:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:31,955 nipype.interface INFO:
stderr 2020-11-12T22:10:31.955239:++ Authored by: Emperor Zhark
201112-22:10:31,958 nipype.interface INFO:
stderr 2020-11-12T22:10:31.958068:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:10:31,963 nipype.interface INFO:
stderr 2020-11-12T22:10:31.962972:++ Forming automask
201112-22:10:31,964 nipype.interface INFO:
stderr 2020-11-12T22:10:31.964830: + Fixed clip level = 419.356445
201112-22:10:31,969 nipype.interface INFO:
stderr 2020-11-12T22:10:31.969000: + Used gradual clip level = 343.526703 .. 467.451538
201112-22:10:31,969 nipype.interface INFO:
stderr 2020-11-12T22:10:31.969209: + Number voxels above clip level = 34007
201112-22:10:31,969 nipype.interface INFO:
stderr 2020-11-12T22:10:31.969361: + Clustering voxels ...
201112-22:10:31,970 nipype.interface INFO:
stderr 2020-11-12T22:10:31.970555: + Largest cluster has 34004 voxels
201112-22:10:31,972 nipype.interface INFO:
stderr 2020-11-12T22:10:31.972001: + Clustering voxels ...
201112-22:10:31,973 nipype.interface INFO:
stderr 2020-11-12T22:10:31.973190: + Largest cluster has 33316 voxels
201112-22:10:31,976 nipype.interface INFO:
stderr 2020-11-12T22:10:31.976578: + Filled 1036 voxels in small holes; now have 34352 voxels
201112-22:10:31,978 nipype.interface INFO:
stderr 2020-11-12T22:10:31.978796: + Filled 7 voxels in large holes; now have 34359 voxels
201112-22:10:31,980 nipype.interface INFO:
stderr 2020-11-12T22:10:31.980353: + Clustering voxels ...
201112-22:10:31,981 nipype.interface INFO:
stderr 2020-11-12T22:10:31.981513: + Largest cluster has 34354 voxels
201112-22:10:31,981 nipype.interface INFO:
stderr 2020-11-12T22:10:31.981742: + Clustering non-brain voxels ...
201112-22:10:31,981 nipype.interface INFO:
stderr 2020-11-12T22:10:31.981886: + Clustering voxels ...
201112-22:10:31,984 nipype.interface INFO:
stderr 2020-11-12T22:10:31.984758: + Largest cluster has 104747 voxels
201112-22:10:31,985 nipype.interface INFO:
stderr 2020-11-12T22:10:31.985294: + Mask now has 34517 voxels
201112-22:10:31,985 nipype.interface INFO:
stderr 2020-11-12T22:10:31.985483:++ Dilating automask
201112-22:10:31,993 nipype.interface INFO:
stderr 2020-11-12T22:10:31.993677: + Clustering voxels ...
201112-22:10:31,996 nipype.interface INFO:
stderr 2020-11-12T22:10:31.996278: + Largest cluster has 98091 voxels
201112-22:10:31,996 nipype.interface INFO:
stderr 2020-11-12T22:10:31.996617:++ 41173 voxels in the mask [out of 139264: 29.56%]
201112-22:10:31,996 nipype.interface INFO:
stderr 2020-11-12T22:10:31.996785:++ first 9 x-planes are zero [from R]
201112-22:10:31,996 nipype.interface INFO:
stderr 2020-11-12T22:10:31.996951:++ last 8 x-planes are zero [from L]
201112-22:10:31,997 nipype.interface INFO:
stderr 2020-11-12T22:10:31.997112:++ first 0 y-planes are zero [from P]
201112-22:10:31,997 nipype.interface INFO:
stderr 2020-11-12T22:10:31.997281:++ last 8 y-planes are zero [from A]
201112-22:10:31,997 nipype.interface INFO:
stderr 2020-11-12T22:10:31.997417:++ first 1 z-planes are zero [from I]
201112-22:10:31,997 nipype.interface INFO:
stderr 2020-11-12T22:10:31.997551:++ last 0 z-planes are zero [from S]
201112-22:10:32,2 nipype.interface INFO:
stderr 2020-11-12T22:10:32.002501:++ Output dataset ./uni_mask.nii.gz
201112-22:10:32,2 nipype.interface INFO:
stderr 2020-11-12T22:10:32.002685:++ applying mask to original data
201112-22:10:32,3 nipype.interface INFO:
stderr 2020-11-12T22:10:32.003437:++ Writing masked data
201112-22:10:32,19 nipype.interface INFO:
stderr 2020-11-12T22:10:32.019763:++ Output dataset ./uni_masked.nii.gz
201112-22:10:32,20 nipype.interface INFO:
stderr 2020-11-12T22:10:32.020158:++ CPU time = 0.000000 sec
201112-22:10:32,192 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:10:32,194 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks".
201112-22:10:32,200 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:10:32,624 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:10:32,625 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/cal_DVARS".
201112-22:10:32,632 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-22:10:33,375 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-22:10:33,377 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain".
201112-22:10:33,385 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz
201112-22:10:33,643 nipype.interface INFO:
stderr 2020-11-12T22:10:33.643030:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:33,643 nipype.interface INFO:
stderr 2020-11-12T22:10:33.643512:++ Authored by: A cast of thousands
201112-22:10:36,562 nipype.interface INFO:
stderr 2020-11-12T22:10:36.562768:++ Output dataset ./sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz
201112-22:10:36,774 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:10:36,776 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize".
201112-22:10:36,783 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain/sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-22:10:39,104 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:10:39,106 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize".
201112-22:10:39,111 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize/sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:10:40,201 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:10:40,203 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean".
201112-22:10:40,208 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz
201112-22:10:40,475 nipype.interface INFO:
stderr 2020-11-12T22:10:40.475214:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:40,476 nipype.interface INFO:
stderr 2020-11-12T22:10:40.476065:++ Authored by: KR Hammett & RW Cox
201112-22:10:40,796 nipype.interface INFO:
stderr 2020-11-12T22:10:40.796188:++ Output dataset ./sub-181_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-22:10:41,0 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:10:41,2 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/norm_motion_params".
201112-22:10:41,8 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:10:41,245 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:10:41,247 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_motion_0/_scan_tgng_run-2/motion_plot".
201112-22:10:41,252 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-22:10:41,701 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_motion_0.motion_plot".
201112-22:10:41,702 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_qc___movement_trans_plot".
201112-22:10:41,709 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:10:41,923 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___movement_trans_plot/_scan_tgng_run-2/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/movement_trans_plot/_scan_tgng_run-2/motion_trans_plot.png
201112-22:10:41,944 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_trans_plot".
201112-22:10:41,946 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_qc___movement_rot_plot".
201112-22:10:41,953 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:10:42,164 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___movement_rot_plot/_scan_tgng_run-2/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/movement_rot_plot/_scan_tgng_run-2/motion_rot_plot.png
201112-22:10:42,185 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_rot_plot".
201112-22:10:42,187 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calc_motion_parameters".
201112-22:10:42,194 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:10:42,431 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-22:10:42,433 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_motion_params".
201112-22:10:42,440 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:10:42,672 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_params".
201112-22:10:42,674 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calculate_FD".
201112-22:10:42,678 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-22:10:42,911 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-22:10:42,913 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_frame_wise_displacement_power".
201112-22:10:42,921 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:10:43,154 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_power".
201112-22:10:43,157 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calc_power_parameters".
201112-22:10:43,163 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:10:43,398 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-22:10:43,400 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_power_params".
201112-22:10:43,407 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:10:43,649 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_power_params".
201112-22:10:43,651 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_movement_parameters".
201112-22:10:43,658 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:10:43,897 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_movement_parameters".
201112-22:10:43,899 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/func_despiked_0".
201112-22:10:43,905 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-181_ses-1_task-tgng_run-2_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/func_despiked_0/sub-181_ses-1_task-tgng_run-2_bold_calc.nii.gz
201112-22:10:44,175 nipype.interface INFO:
stderr 2020-11-12T22:10:44.175046:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:44,175 nipype.interface INFO:
stderr 2020-11-12T22:10:44.175659:++ Authored by: RW Cox
201112-22:10:44,179 nipype.interface INFO:
stderr 2020-11-12T22:10:44.179217:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:10:44,179 nipype.interface INFO:
stderr 2020-11-12T22:10:44.179217: such as /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/func_despiked_0/sub-181_ses-1_task-tgng_run-2_bold_calc.nii.gz,
201112-22:10:44,179 nipype.interface INFO:
stderr 2020-11-12T22:10:44.179217: or viewing/combining it with volumes of differing obliquity,
201112-22:10:44,179 nipype.interface INFO:
stderr 2020-11-12T22:10:44.179217: you should consider running:
201112-22:10:44,179 nipype.interface INFO:
stderr 2020-11-12T22:10:44.179217: 3dWarp -deoblique
201112-22:10:44,180 nipype.interface INFO:
stderr 2020-11-12T22:10:44.179217: on this and other oblique datasets in the same session.
201112-22:10:44,180 nipype.interface INFO:
stderr 2020-11-12T22:10:44.179217: See 3dWarp -help for details.
201112-22:10:44,180 nipype.interface INFO:
stderr 2020-11-12T22:10:44.180368:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/func_despiked_0/sub-181_ses-1_task-tgng_run-2_bold_calc.nii.gz is 28.005903 degrees from plumb.
201112-22:10:44,180 nipype.interface INFO:
stderr 2020-11-12T22:10:44.180615:++ Input dataset is in short format, but output will be in float format
201112-22:10:44,180 nipype.interface INFO:
stderr 2020-11-12T22:10:44.180834:++ ignoring first 0 time points, using last 130
201112-22:10:44,181 nipype.interface INFO:
stderr 2020-11-12T22:10:44.181066:++ using 130 time points => -corder 4
201112-22:10:44,181 nipype.interface INFO:
stderr 2020-11-12T22:10:44.181278:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/func_despiked_0/sub-181_ses-1_task-tgng_run-2_bold_calc.nii.gz
201112-22:10:44,738 nipype.interface INFO:
stderr 2020-11-12T22:10:44.738555:++ 39068 voxels in the automask [out of 139264 in dataset]
201112-22:10:44,744 nipype.interface INFO:
stderr 2020-11-12T22:10:44.744036:++ 64771 voxels in the dilated automask [out of 139264 in dataset]
201112-22:10:44,756 nipype.interface INFO:
stderr 2020-11-12T22:10:44.755950:++ Procesing time series with OLD model fit algorithm
201112-22:10:44,756 nipype.interface INFO:
stderr 2020-11-12T22:10:44.756323:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-22:10:44,756 nipype.interface INFO:
stderr 2020-11-12T22:10:44.756504: + [ 3.457% .. 0.072% of normal distribution]
201112-22:10:44,756 nipype.interface INFO:
stderr 2020-11-12T22:10:44.756658: + [ 8.839% .. 3.125% of Laplace distribution]
201112-22:10:44,756 nipype.interface INFO:
stderr 2020-11-12T22:10:44.756820:++ start OpenMP thread #0
201112-22:10:50,854 nipype.interface INFO:
stderr 2020-11-12T22:10:50.854254:...........................
201112-22:10:50,854 nipype.interface INFO:
stderr 2020-11-12T22:10:50.854813:++ Elapsed despike time = 6s 98ms
201112-22:10:50,855 nipype.interface INFO:
stderr 2020-11-12T22:10:50.854990:
201112-22:10:50,855 nipype.interface INFO:
stderr 2020-11-12T22:10:50.855876:++ FINAL: 8420230 data points, 526011 edits [6.247%], 47717 big edits [0.567%]
201112-22:10:55,471 nipype.interface INFO:
stderr 2020-11-12T22:10:55.471625:++ Output dataset ./sub-181_ses-1_task-tgng_run-2_bold_calc_despike.nii.gz
201112-22:10:55,697 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_despiked_0".
201112-22:10:55,699 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing".
201112-22:10:55,708 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:10:55,709 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing/sub-181_ses-1_task-tgng_run-2_bold_calc_despike.nii.gz
201112-22:10:55,921 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:10:55,971 nipype.interface INFO:
stderr 2020-11-12T22:10:55.971354:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:55,975 nipype.interface INFO:
stderr 2020-11-12T22:10:55.975380:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:10:55,975 nipype.interface INFO:
stderr 2020-11-12T22:10:55.975380: such as /outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing/sub-181_ses-1_task-tgng_run-2_bold_calc_despike.nii.gz,
201112-22:10:55,975 nipype.interface INFO:
stderr 2020-11-12T22:10:55.975380: or viewing/combining it with volumes of differing obliquity,
201112-22:10:55,975 nipype.interface INFO:
stderr 2020-11-12T22:10:55.975380: you should consider running:
201112-22:10:55,976 nipype.interface INFO:
stderr 2020-11-12T22:10:55.975380: 3dWarp -deoblique
201112-22:10:55,976 nipype.interface INFO:
stderr 2020-11-12T22:10:55.975380: on this and other oblique datasets in the same session.
201112-22:10:55,976 nipype.interface INFO:
stderr 2020-11-12T22:10:55.975380: See 3dWarp -help for details.
201112-22:10:55,976 nipype.interface INFO:
stderr 2020-11-12T22:10:55.976529:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing/sub-181_ses-1_task-tgng_run-2_bold_calc_despike.nii.gz is 28.005903 degrees from plumb.
201112-22:11:00,486 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_slice_timing_correction_0.slice_timing".
201112-22:11:00,488 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique".
201112-22:11:00,552 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift.nii.gz
201112-22:11:00,805 nipype.interface INFO:
stderr 2020-11-12T22:11:00.805157:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:11:00,805 nipype.interface INFO:
stderr 2020-11-12T22:11:00.805632:++ Authored by: RW Cox
201112-22:11:00,816 nipype.interface INFO:
stderr 2020-11-12T22:11:00.816656:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift.nii.gz
201112-22:11:00,817 nipype.interface INFO:
stderr 2020-11-12T22:11:00.817852: + deoblique
201112-22:11:00,818 nipype.interface INFO:
stderr 2020-11-12T22:11:00.818043: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-22:11:03,165 nipype.interface INFO:
stderr 2020-11-12T22:11:03.165540:++ 3drefit processed 1 datasets
201112-22:11:03,370 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:11:03,372 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient".
201112-22:11:03,379 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift.nii.gz
201112-22:11:06,378 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:11:06,380 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI".
201112-22:11:06,387 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz
201112-22:11:06,642 nipype.interface INFO:
stderr 2020-11-12T22:11:06.642822:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:11:06,643 nipype.interface INFO:
stderr 2020-11-12T22:11:06.643317:++ Authored by: KR Hammett & RW Cox
201112-22:11:07,266 nipype.interface INFO:
stderr 2020-11-12T22:11:07.265990:++ Output dataset ./sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-22:11:07,443 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:11:07,444 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref".
201112-22:11:07,451 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz
201112-22:11:07,707 nipype.interface INFO:
stderr 2020-11-12T22:11:07.707219:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:11:07,707 nipype.interface INFO:
stderr 2020-11-12T22:11:07.707825:++ Authored by: RW Cox
201112-22:11:07,715 nipype.interface INFO:
stderr 2020-11-12T22:11:07.715490:++ Coarse del was 10, replaced with 3
201112-22:12:58,98 nipype.interface INFO:
stderr 2020-11-12T22:12:58.098332:++ Max displacement in automask = 0.31 (mm) at sub-brick 122
201112-22:12:58,99 nipype.interface INFO:
stderr 2020-11-12T22:12:58.099369:++ Max delta displ in automask = 0.15 (mm) at sub-brick 72
201112-22:13:02,798 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:13:02,801 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion".
201112-22:13:02,810 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-22:13:03,96 nipype.interface INFO:
stderr 2020-11-12T22:13:03.096603:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:13:03,97 nipype.interface INFO:
stderr 2020-11-12T22:13:03.097468:++ Authored by: KR Hammett & RW Cox
201112-22:13:03,915 nipype.interface INFO:
stderr 2020-11-12T22:13:03.915522:++ Output dataset ./sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-22:13:04,133 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:13:04,134 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt".
201112-22:13:04,143 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:13:27,119 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:13:27,130 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_motion_correct".
201112-22:13:27,139 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:13:27,371 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_correct".
201112-22:13:27,372 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull".
201112-22:13:27,380 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-22:13:27,639 nipype.interface INFO:
stderr 2020-11-12T22:13:27.639394:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:13:27,639 nipype.interface INFO:
stderr 2020-11-12T22:13:27.639875:++ Authored by: KR Hammett & RW Cox
201112-22:13:28,303 nipype.interface INFO:
stderr 2020-11-12T22:13:28.303770:++ Output dataset ./sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-22:13:28,485 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:13:28,486 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass".
201112-22:13:28,492 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:13:30,393 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:13:30,394 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate".
201112-22:13:30,400 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:13:31,60 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:13:31,62 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask".
201112-22:13:31,66 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:13:31,497 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:13:31,499 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize".
201112-22:13:31,504 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:13:31,760 nipype.interface INFO:
stderr 2020-11-12T22:13:31.760316:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:14:52,45 nipype.interface INFO:
stderr 2020-11-12T22:14:52.045706: + Pre-processing: IAV..UW[s4942]Im
201112-22:14:52,61 nipype.interface INFO:
stderr 2020-11-12T22:14:52.061429:++ Output dataset ./uni.nii.gz
201112-22:14:52,61 nipype.interface INFO:
stderr 2020-11-12T22:14:52.061723:++ ===== Elapsed = 80.3 sec
201112-22:14:52,252 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:14:52,253 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass".
201112-22:14:52,261 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:14:52,516 nipype.interface INFO:
stderr 2020-11-12T22:14:52.516445:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:14:52,516 nipype.interface INFO:
stderr 2020-11-12T22:14:52.516899:++ Authored by: Emperor Zhark
201112-22:14:52,520 nipype.interface INFO:
stderr 2020-11-12T22:14:52.520454:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:14:52,526 nipype.interface INFO:
stderr 2020-11-12T22:14:52.526712:++ Forming automask
201112-22:14:52,528 nipype.interface INFO:
stderr 2020-11-12T22:14:52.528492: + Fixed clip level = 419.689148
201112-22:14:52,531 nipype.interface INFO:
stderr 2020-11-12T22:14:52.531833: + Used gradual clip level = 344.518433 .. 467.432587
201112-22:14:52,532 nipype.interface INFO:
stderr 2020-11-12T22:14:52.532048: + Number voxels above clip level = 34041
201112-22:14:52,532 nipype.interface INFO:
stderr 2020-11-12T22:14:52.532203: + Clustering voxels ...
201112-22:14:52,533 nipype.interface INFO:
stderr 2020-11-12T22:14:52.533393: + Largest cluster has 34038 voxels
201112-22:14:52,534 nipype.interface INFO:
stderr 2020-11-12T22:14:52.534829: + Clustering voxels ...
201112-22:14:52,536 nipype.interface INFO:
stderr 2020-11-12T22:14:52.536015: + Largest cluster has 33339 voxels
201112-22:14:52,539 nipype.interface INFO:
stderr 2020-11-12T22:14:52.539405: + Filled 1027 voxels in small holes; now have 34366 voxels
201112-22:14:52,541 nipype.interface INFO:
stderr 2020-11-12T22:14:52.541858: + Filled 7 voxels in large holes; now have 34373 voxels
201112-22:14:52,543 nipype.interface INFO:
stderr 2020-11-12T22:14:52.543239: + Clustering voxels ...
201112-22:14:52,544 nipype.interface INFO:
stderr 2020-11-12T22:14:52.544398: + Largest cluster has 34369 voxels
201112-22:14:52,544 nipype.interface INFO:
stderr 2020-11-12T22:14:52.544627: + Clustering non-brain voxels ...
201112-22:14:52,544 nipype.interface INFO:
stderr 2020-11-12T22:14:52.544774: + Clustering voxels ...
201112-22:14:52,547 nipype.interface INFO:
stderr 2020-11-12T22:14:52.547609: + Largest cluster has 104732 voxels
201112-22:14:52,547 nipype.interface INFO:
stderr 2020-11-12T22:14:52.547937: + Mask now has 34532 voxels
201112-22:14:52,548 nipype.interface INFO:
stderr 2020-11-12T22:14:52.548121:++ Dilating automask
201112-22:14:52,555 nipype.interface INFO:
stderr 2020-11-12T22:14:52.555868: + Clustering voxels ...
201112-22:14:52,558 nipype.interface INFO:
stderr 2020-11-12T22:14:52.558283: + Largest cluster has 98078 voxels
201112-22:14:52,558 nipype.interface INFO:
stderr 2020-11-12T22:14:52.558618:++ 41186 voxels in the mask [out of 139264: 29.57%]
201112-22:14:52,558 nipype.interface INFO:
stderr 2020-11-12T22:14:52.558784:++ first 9 x-planes are zero [from R]
201112-22:14:52,558 nipype.interface INFO:
stderr 2020-11-12T22:14:52.558946:++ last 8 x-planes are zero [from L]
201112-22:14:52,559 nipype.interface INFO:
stderr 2020-11-12T22:14:52.559083:++ first 0 y-planes are zero [from P]
201112-22:14:52,559 nipype.interface INFO:
stderr 2020-11-12T22:14:52.559230:++ last 8 y-planes are zero [from A]
201112-22:14:52,559 nipype.interface INFO:
stderr 2020-11-12T22:14:52.559364:++ first 1 z-planes are zero [from I]
201112-22:14:52,559 nipype.interface INFO:
stderr 2020-11-12T22:14:52.559495:++ last 0 z-planes are zero [from S]
201112-22:14:52,564 nipype.interface INFO:
stderr 2020-11-12T22:14:52.563982:++ Output dataset ./uni_mask.nii.gz
201112-22:14:52,564 nipype.interface INFO:
stderr 2020-11-12T22:14:52.564168:++ applying mask to original data
201112-22:14:52,564 nipype.interface INFO:
stderr 2020-11-12T22:14:52.564919:++ Writing masked data
201112-22:14:52,581 nipype.interface INFO:
stderr 2020-11-12T22:14:52.581875:++ Output dataset ./uni_masked.nii.gz
201112-22:14:52,582 nipype.interface INFO:
stderr 2020-11-12T22:14:52.582348:++ CPU time = 0.000000 sec
201112-22:14:52,754 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:14:52,756 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks".
201112-22:14:52,763 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:14:53,203 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:14:53,205 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-22:14:53,210 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-22:14:53,444 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-22:14:53,446 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-22:14:53,452 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:14:53,719 nipype.interface INFO:
stderr 2020-11-12T22:14:53.718910:++ no -frac option: defaulting to -union
201112-22:14:53,719 nipype.interface INFO:
stderr 2020-11-12T22:14:53.719822:++ processing 1 input dataset(s), NN=2...
201112-22:14:53,720 nipype.interface INFO:
stderr 2020-11-12T22:14:53.720093:++ padding all datasets by 0 (for dilations)
201112-22:14:53,728 nipype.interface INFO:
stderr 2020-11-12T22:14:53.727996:++ frac 0 over 1 volumes gives min count 0
201112-22:14:53,728 nipype.interface INFO:
stderr 2020-11-12T22:14:53.728572:++ voxel limits: 0 clipped, 41090 survived, 98174 were zero
201112-22:14:53,728 nipype.interface INFO:
stderr 2020-11-12T22:14:53.728742:++ writing result sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-22:14:53,733 nipype.interface INFO:
stderr 2020-11-12T22:14:53.733500:++ Output dataset ./sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-22:14:53,913 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-22:14:53,914 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_functional_brain_mask".
201112-22:14:53,923 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:54,157 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask".
201112-22:14:54,159 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/functional_brain_mask_derivative_0".
201112-22:14:54,164 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-22:14:54,375 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-22:14:54,381 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:14:54,913 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201112-22:14:54,934 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.functional_brain_mask_derivative_0".
201112-22:14:54,935 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain".
201112-22:14:54,944 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:14:55,197 nipype.interface INFO:
stderr 2020-11-12T22:14:55.197394:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:14:55,197 nipype.interface INFO:
stderr 2020-11-12T22:14:55.197893:++ Authored by: A cast of thousands
201112-22:14:58,444 nipype.interface INFO:
stderr 2020-11-12T22:14:58.444393:++ Output dataset ./sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:14:58,652 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:14:58,654 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize".
201112-22:14:58,660 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-22:15:01,124 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:15:01,125 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-22:15:01,132 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:15:02,54 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_mean".
201112-22:15:02,55 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-22:15:02,61 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:15:02,313 nipype.interface INFO:
stderr 2020-11-12T22:15:02.313373:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:15:02,313 nipype.interface INFO:
stderr 2020-11-12T22:15:02.313861:++ Authored by: KR Hammett & RW Cox
201112-22:15:02,906 nipype.interface INFO:
stderr 2020-11-12T22:15:02.906230:++ Output dataset ./sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:15:03,83 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.functional_mean".
201112-22:15:03,84 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-2/std_dev".
201112-22:15:03,92 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-2/std_dev/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:15:03,351 nipype.interface INFO:
stderr 2020-11-12T22:15:03.351767:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:15:03,352 nipype.interface INFO:
stderr 2020-11-12T22:15:03.352579:++ Authored by: KR Hammett & RW Cox
201112-22:15:03,910 nipype.interface INFO:
stderr 2020-11-12T22:15:03.910626:++ Output dataset ./sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:15:04,113 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev".
201112-22:15:04,114 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_functional_preprocessed".
201112-22:15:04,120 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:15:04,355 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed".
201112-22:15:04,357 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize".
201112-22:15:04,363 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:15:05,503 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:15:05,504 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_functional_preprocessed_mask".
201112-22:15:05,512 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:15:05,749 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed_mask".
201112-22:15:05,751 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean".
201112-22:15:05,758 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:15:06,21 nipype.interface INFO:
stderr 2020-11-12T22:15:06.021530:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:15:06,22 nipype.interface INFO:
stderr 2020-11-12T22:15:06.022244:++ Authored by: KR Hammett & RW Cox
201112-22:15:06,593 nipype.interface INFO:
stderr 2020-11-12T22:15:06.593300:++ Output dataset ./sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-22:15:06,801 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:15:06,803 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_mean_functional".
201112-22:15:06,811 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:15:07,51 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional".
201112-22:15:07,53 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/norm_motion_params".
201112-22:15:07,60 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:15:07,298 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:15:07,300 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_slice_time_corrected".
201112-22:15:07,307 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:15:07,541 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_slice_time_corrected".
201112-22:15:07,543 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_raw_functional".
201112-22:15:07,571 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:15:07,952 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_raw_functional".
201112-22:15:07,954 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_tgng_run-2/check_func_scan".
201112-22:15:07,989 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:15:08,227 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.check_func_scan".
201112-22:15:08,238 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_tgng_run-1/select_scan_params".
201112-22:15:08,269 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:15:08,508 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.select_scan_params".
201112-22:15:08,520 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_tgng_run-1/s3_scan_params".
201112-22:15:08,529 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:15:08,766 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.s3_scan_params".
201112-22:15:08,770 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.scan_params_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/scan_params_0".
201112-22:15:08,780 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:15:09,15 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.scan_params_0".
201112-22:15:09,17 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_tgng_run-1/selectrest".
201112-22:15:09,50 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:15:09,287 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.selectrest".
201112-22:15:09,298 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_tgng_run-1/check_for_s3".
201112-22:15:09,302 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:15:09,594 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.check_for_s3".
201112-22:15:09,595 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-181_ses-1/edit_func_0/_scan_tgng_run-1/func_get_idx".
201112-22:15:09,601 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:15:09,836 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.edit_func_0.func_get_idx".
201112-22:15:09,838 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-181_ses-1/edit_func_0/_scan_tgng_run-1/func_drop_trs".
201112-22:15:09,845 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-181/ses-1/func/sub-181_ses-1_task-tgng_run-1_bold.nii.gz[0..129] -expr "a" -prefix sub-181_ses-1_task-tgng_run-1_bold_calc.nii.gz
201112-22:15:10,101 nipype.interface INFO:
stderr 2020-11-12T22:15:10.101711:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:15:10,102 nipype.interface INFO:
stderr 2020-11-12T22:15:10.102233:++ Authored by: A cast of thousands
201112-22:15:15,763 nipype.interface INFO:
stderr 2020-11-12T22:15:15.763359:++ Output dataset ./sub-181_ses-1_task-tgng_run-1_bold_calc.nii.gz
201112-22:15:15,972 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.edit_func_0.func_drop_trs".
201112-22:15:15,973 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique".
201112-22:15:16,23 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-181_ses-1_task-tgng_run-1_bold_calc.nii.gz
201112-22:15:16,276 nipype.interface INFO:
stderr 2020-11-12T22:15:16.276707:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:15:16,277 nipype.interface INFO:
stderr 2020-11-12T22:15:16.277455:++ Authored by: RW Cox
201112-22:15:16,291 nipype.interface INFO:
stderr 2020-11-12T22:15:16.291332:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-181_ses-1_task-tgng_run-1_bold_calc.nii.gz
201112-22:15:16,292 nipype.interface INFO:
stderr 2020-11-12T22:15:16.292666: + deoblique
201112-22:15:16,293 nipype.interface INFO:
stderr 2020-11-12T22:15:16.293039: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-181_ses-1_task-tgng_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-181_ses-1_task-tgng_run-1_bold_calc.nii.gz in NIFTI storage)
201112-22:15:20,100 nipype.interface INFO:
stderr 2020-11-12T22:15:20.100203:++ 3drefit processed 1 datasets
201112-22:15:20,313 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:15:20,314 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient".
201112-22:15:20,321 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-1_task-tgng_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-181_ses-1_task-tgng_run-1_bold_calc.nii.gz
201112-22:15:24,798 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:15:24,800 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI".
201112-22:15:24,806 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-181_ses-1_task-tgng_run-1_bold_calc_resample.nii.gz
201112-22:15:25,58 nipype.interface INFO:
stderr 2020-11-12T22:15:25.058527:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:15:25,58 nipype.interface INFO:
stderr 2020-11-12T22:15:25.058894:++ Authored by: KR Hammett & RW Cox
201112-22:15:25,538 nipype.interface INFO:
stderr 2020-11-12T22:15:25.538516:++ Output dataset ./sub-181_ses-1_task-tgng_run-1_bold_calc_resample_tstat.nii.gz
201112-22:15:25,708 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:15:25,710 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref".
201112-22:15:25,716 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-1_task-tgng_run-1_bold_calc_resample.1D -1Dmatrix_save sub-181_ses-1_task-tgng_run-1_bold_calc_resample.aff12.1D -prefix sub-181_ses-1_task-tgng_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-181_ses-1_task-tgng_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-1_task-tgng_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref/sub-181_ses-1_task-tgng_run-1_bold_calc_resample.nii.gz
201112-22:15:25,966 nipype.interface INFO:
stderr 2020-11-12T22:15:25.966783:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:15:25,967 nipype.interface INFO:
stderr 2020-11-12T22:15:25.967246:++ Authored by: RW Cox
201112-22:15:25,977 nipype.interface INFO:
stderr 2020-11-12T22:15:25.977309:++ Coarse del was 10, replaced with 3
201112-22:17:15,296 nipype.interface INFO:
stderr 2020-11-12T22:17:15.296406:++ Max displacement in automask = 0.28 (mm) at sub-brick 42
201112-22:17:15,297 nipype.interface INFO:
stderr 2020-11-12T22:17:15.297629:++ Max delta displ in automask = 0.32 (mm) at sub-brick 42
201112-22:17:19,22 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:17:19,24 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion".
201112-22:17:19,30 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-181_ses-1_task-tgng_run-1_bold_calc_resample_volreg.nii.gz
201112-22:17:19,285 nipype.interface INFO:
stderr 2020-11-12T22:17:19.285289:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:17:19,285 nipype.interface INFO:
stderr 2020-11-12T22:17:19.285743:++ Authored by: KR Hammett & RW Cox
201112-22:17:19,772 nipype.interface INFO:
stderr 2020-11-12T22:17:19.772613:++ Output dataset ./sub-181_ses-1_task-tgng_run-1_bold_calc_resample_volreg_tstat.nii.gz
201112-22:17:19,943 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:17:19,944 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt".
201112-22:17:19,951 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-181_ses-1_task-tgng_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-181_ses-1_task-tgng_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:17:44,519 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:17:44,528 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calculate_FDJ".
201112-22:17:44,534 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:17:44,762 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:17:44,763 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_frame_wise_displacement_jenkinson".
201112-22:17:44,771 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:17:45,1 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_jenkinson".
201112-22:17:45,3 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_max_displacement".
201112-22:17:45,10 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:17:45,242 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_max_displacement".
201112-22:17:45,243 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_coordinate_transformation".
201112-22:17:45,262 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:17:45,531 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_coordinate_transformation".
201112-22:17:45,542 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull".
201112-22:17:45,550 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf.nii.gz
201112-22:17:45,807 nipype.interface INFO:
stderr 2020-11-12T22:17:45.807836:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:17:45,808 nipype.interface INFO:
stderr 2020-11-12T22:17:45.808645:++ Authored by: KR Hammett & RW Cox
201112-22:17:46,336 nipype.interface INFO:
stderr 2020-11-12T22:17:46.336505:++ Output dataset ./sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat.nii.gz
201112-22:17:46,520 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:17:46,522 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass".
201112-22:17:46,529 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:17:48,421 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:17:48,423 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate".
201112-22:17:48,429 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:17:49,153 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:17:49,154 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask".
201112-22:17:49,160 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask/sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:17:49,614 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:17:49,616 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize".
201112-22:17:49,622 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize/sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:17:49,900 nipype.interface INFO:
stderr 2020-11-12T22:17:49.900542:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:19:09,990 nipype.interface INFO:
stderr 2020-11-12T22:19:09.990639: + Pre-processing: IAV..UW[s4900]Im
201112-22:19:10,8 nipype.interface INFO:
stderr 2020-11-12T22:19:10.008924:++ Output dataset ./uni.nii.gz
201112-22:19:10,9 nipype.interface INFO:
stderr 2020-11-12T22:19:10.009354:++ ===== Elapsed = 80.1 sec
201112-22:19:10,209 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:19:10,211 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass".
201112-22:19:10,219 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:19:10,479 nipype.interface INFO:
stderr 2020-11-12T22:19:10.479135:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:19:10,479 nipype.interface INFO:
stderr 2020-11-12T22:19:10.479628:++ Authored by: Emperor Zhark
201112-22:19:10,482 nipype.interface INFO:
stderr 2020-11-12T22:19:10.482537:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:19:10,488 nipype.interface INFO:
stderr 2020-11-12T22:19:10.488771:++ Forming automask
201112-22:19:10,490 nipype.interface INFO:
stderr 2020-11-12T22:19:10.490612: + Fixed clip level = 418.784515
201112-22:19:10,494 nipype.interface INFO:
stderr 2020-11-12T22:19:10.494932: + Used gradual clip level = 345.364899 .. 469.032684
201112-22:19:10,495 nipype.interface INFO:
stderr 2020-11-12T22:19:10.495208: + Number voxels above clip level = 33924
201112-22:19:10,495 nipype.interface INFO:
stderr 2020-11-12T22:19:10.495404: + Clustering voxels ...
201112-22:19:10,497 nipype.interface INFO:
stderr 2020-11-12T22:19:10.497158: + Largest cluster has 33920 voxels
201112-22:19:10,498 nipype.interface INFO:
stderr 2020-11-12T22:19:10.498651: + Clustering voxels ...
201112-22:19:10,499 nipype.interface INFO:
stderr 2020-11-12T22:19:10.499839: + Largest cluster has 33281 voxels
201112-22:19:10,503 nipype.interface INFO:
stderr 2020-11-12T22:19:10.503483: + Filled 1071 voxels in small holes; now have 34352 voxels
201112-22:19:10,506 nipype.interface INFO:
stderr 2020-11-12T22:19:10.506747: + Filled 10 voxels in large holes; now have 34362 voxels
201112-22:19:10,508 nipype.interface INFO:
stderr 2020-11-12T22:19:10.508090: + Clustering voxels ...
201112-22:19:10,509 nipype.interface INFO:
stderr 2020-11-12T22:19:10.509293: + Largest cluster has 34354 voxels
201112-22:19:10,509 nipype.interface INFO:
stderr 2020-11-12T22:19:10.509537: + Clustering non-brain voxels ...
201112-22:19:10,509 nipype.interface INFO:
stderr 2020-11-12T22:19:10.509679: + Clustering voxels ...
201112-22:19:10,512 nipype.interface INFO:
stderr 2020-11-12T22:19:10.512782: + Largest cluster has 104720 voxels
201112-22:19:10,513 nipype.interface INFO:
stderr 2020-11-12T22:19:10.513122: + Mask now has 34544 voxels
201112-22:19:10,513 nipype.interface INFO:
stderr 2020-11-12T22:19:10.513280:++ Dilating automask
201112-22:19:10,521 nipype.interface INFO:
stderr 2020-11-12T22:19:10.521189: + Clustering voxels ...
201112-22:19:10,523 nipype.interface INFO:
stderr 2020-11-12T22:19:10.523588: + Largest cluster has 98105 voxels
201112-22:19:10,523 nipype.interface INFO:
stderr 2020-11-12T22:19:10.523929:++ 41159 voxels in the mask [out of 139264: 29.55%]
201112-22:19:10,524 nipype.interface INFO:
stderr 2020-11-12T22:19:10.524131:++ first 9 x-planes are zero [from R]
201112-22:19:10,524 nipype.interface INFO:
stderr 2020-11-12T22:19:10.524315:++ last 8 x-planes are zero [from L]
201112-22:19:10,524 nipype.interface INFO:
stderr 2020-11-12T22:19:10.524451:++ first 0 y-planes are zero [from P]
201112-22:19:10,524 nipype.interface INFO:
stderr 2020-11-12T22:19:10.524599:++ last 8 y-planes are zero [from A]
201112-22:19:10,524 nipype.interface INFO:
stderr 2020-11-12T22:19:10.524736:++ first 1 z-planes are zero [from I]
201112-22:19:10,524 nipype.interface INFO:
stderr 2020-11-12T22:19:10.524868:++ last 0 z-planes are zero [from S]
201112-22:19:10,530 nipype.interface INFO:
stderr 2020-11-12T22:19:10.530341:++ Output dataset ./uni_mask.nii.gz
201112-22:19:10,530 nipype.interface INFO:
stderr 2020-11-12T22:19:10.530586:++ applying mask to original data
201112-22:19:10,531 nipype.interface INFO:
stderr 2020-11-12T22:19:10.531542:++ Writing masked data
201112-22:19:10,548 nipype.interface INFO:
stderr 2020-11-12T22:19:10.548712:++ Output dataset ./uni_masked.nii.gz
201112-22:19:10,549 nipype.interface INFO:
stderr 2020-11-12T22:19:10.549243:++ CPU time = 0.000000 sec
201112-22:19:10,721 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:19:10,723 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks".
201112-22:19:10,729 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:19:11,154 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:19:11,155 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/cal_DVARS".
201112-22:19:11,162 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-22:19:11,881 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-22:19:11,882 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain".
201112-22:19:11,891 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:19:12,139 nipype.interface INFO:
stderr 2020-11-12T22:19:12.139721:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:19:12,140 nipype.interface INFO:
stderr 2020-11-12T22:19:12.140386:++ Authored by: A cast of thousands
201112-22:19:15,43 nipype.interface INFO:
stderr 2020-11-12T22:19:15.043185:++ Output dataset ./sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:19:15,241 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:19:15,243 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize".
201112-22:19:15,249 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain/sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-22:19:17,569 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:19:17,571 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize".
201112-22:19:17,578 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize/sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:19:18,680 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:19:18,682 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean".
201112-22:19:18,688 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:19:18,946 nipype.interface INFO:
stderr 2020-11-12T22:19:18.946070:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:19:18,946 nipype.interface INFO:
stderr 2020-11-12T22:19:18.946650:++ Authored by: KR Hammett & RW Cox
201112-22:19:19,262 nipype.interface INFO:
stderr 2020-11-12T22:19:19.262546:++ Output dataset ./sub-181_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-22:19:19,470 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:19:19,472 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/norm_motion_params".
201112-22:19:19,478 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:19:19,716 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:19:19,717 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_motion_0/_scan_tgng_run-1/motion_plot".
201112-22:19:19,722 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-22:19:20,192 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_motion_0.motion_plot".
201112-22:19:20,193 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_qc___movement_trans_plot".
201112-22:19:20,202 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:19:20,413 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___movement_trans_plot/_scan_tgng_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/movement_trans_plot/_scan_tgng_run-1/motion_trans_plot.png
201112-22:19:20,435 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_trans_plot".
201112-22:19:20,437 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_qc___movement_rot_plot".
201112-22:19:20,445 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:19:20,660 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___movement_rot_plot/_scan_tgng_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/movement_rot_plot/_scan_tgng_run-1/motion_rot_plot.png
201112-22:19:20,682 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_rot_plot".
201112-22:19:20,684 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calc_motion_parameters".
201112-22:19:20,691 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:19:20,929 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-22:19:20,931 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_motion_params".
201112-22:19:20,938 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:19:21,172 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_params".
201112-22:19:21,174 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calculate_FD".
201112-22:19:21,178 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-22:19:21,415 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-22:19:21,416 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_frame_wise_displacement_power".
201112-22:19:21,424 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:19:21,661 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_power".
201112-22:19:21,663 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calc_power_parameters".
201112-22:19:21,667 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:19:21,905 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-22:19:21,907 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_power_params".
201112-22:19:21,915 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:19:22,152 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_power_params".
201112-22:19:22,154 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_movement_parameters".
201112-22:19:22,161 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:19:22,395 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_movement_parameters".
201112-22:19:22,396 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/func_despiked_0".
201112-22:19:22,402 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-181_ses-1_task-tgng_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/func_despiked_0/sub-181_ses-1_task-tgng_run-1_bold_calc.nii.gz
201112-22:19:22,656 nipype.interface INFO:
stderr 2020-11-12T22:19:22.656578:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:19:22,657 nipype.interface INFO:
stderr 2020-11-12T22:19:22.657112:++ Authored by: RW Cox
201112-22:19:22,659 nipype.interface INFO:
stderr 2020-11-12T22:19:22.659226:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:19:22,659 nipype.interface INFO:
stderr 2020-11-12T22:19:22.659226: such as /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/func_despiked_0/sub-181_ses-1_task-tgng_run-1_bold_calc.nii.gz,
201112-22:19:22,659 nipype.interface INFO:
stderr 2020-11-12T22:19:22.659226: or viewing/combining it with volumes of differing obliquity,
201112-22:19:22,659 nipype.interface INFO:
stderr 2020-11-12T22:19:22.659226: you should consider running:
201112-22:19:22,659 nipype.interface INFO:
stderr 2020-11-12T22:19:22.659226: 3dWarp -deoblique
201112-22:19:22,659 nipype.interface INFO:
stderr 2020-11-12T22:19:22.659226: on this and other oblique datasets in the same session.
201112-22:19:22,659 nipype.interface INFO:
stderr 2020-11-12T22:19:22.659226: See 3dWarp -help for details.
201112-22:19:22,659 nipype.interface INFO:
stderr 2020-11-12T22:19:22.659922:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/func_despiked_0/sub-181_ses-1_task-tgng_run-1_bold_calc.nii.gz is 28.005903 degrees from plumb.
201112-22:19:22,660 nipype.interface INFO:
stderr 2020-11-12T22:19:22.660086:++ Input dataset is in short format, but output will be in float format
201112-22:19:22,660 nipype.interface INFO:
stderr 2020-11-12T22:19:22.660229:++ ignoring first 0 time points, using last 130
201112-22:19:22,660 nipype.interface INFO:
stderr 2020-11-12T22:19:22.660368:++ using 130 time points => -corder 4
201112-22:19:22,660 nipype.interface INFO:
stderr 2020-11-12T22:19:22.660500:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/func_despiked_0/sub-181_ses-1_task-tgng_run-1_bold_calc.nii.gz
201112-22:19:23,147 nipype.interface INFO:
stderr 2020-11-12T22:19:23.147474:++ 39043 voxels in the automask [out of 139264 in dataset]
201112-22:19:23,152 nipype.interface INFO:
stderr 2020-11-12T22:19:23.152883:++ 64860 voxels in the dilated automask [out of 139264 in dataset]
201112-22:19:23,164 nipype.interface INFO:
stderr 2020-11-12T22:19:23.164302:++ Procesing time series with OLD model fit algorithm
201112-22:19:23,164 nipype.interface INFO:
stderr 2020-11-12T22:19:23.164660:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-22:19:23,164 nipype.interface INFO:
stderr 2020-11-12T22:19:23.164825: + [ 3.457% .. 0.072% of normal distribution]
201112-22:19:23,165 nipype.interface INFO:
stderr 2020-11-12T22:19:23.165003: + [ 8.839% .. 3.125% of Laplace distribution]
201112-22:19:23,165 nipype.interface INFO:
stderr 2020-11-12T22:19:23.165175:++ start OpenMP thread #0
201112-22:19:29,45 nipype.interface INFO:
stderr 2020-11-12T22:19:29.045396:...........................
201112-22:19:29,46 nipype.interface INFO:
stderr 2020-11-12T22:19:29.045984:++ Elapsed despike time = 5s 881ms
201112-22:19:29,46 nipype.interface INFO:
stderr 2020-11-12T22:19:29.046136:
201112-22:19:29,47 nipype.interface INFO:
stderr 2020-11-12T22:19:29.046998:++ FINAL: 8431800 data points, 546132 edits [6.477%], 63116 big edits [0.749%]
201112-22:19:33,702 nipype.interface INFO:
stderr 2020-11-12T22:19:33.702740:++ Output dataset ./sub-181_ses-1_task-tgng_run-1_bold_calc_despike.nii.gz
201112-22:19:33,906 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_despiked_0".
201112-22:19:33,908 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing".
201112-22:19:33,916 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:19:33,917 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing/sub-181_ses-1_task-tgng_run-1_bold_calc_despike.nii.gz
201112-22:19:34,131 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:19:34,173 nipype.interface INFO:
stderr 2020-11-12T22:19:34.173343:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:19:34,176 nipype.interface INFO:
stderr 2020-11-12T22:19:34.176685:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:19:34,176 nipype.interface INFO:
stderr 2020-11-12T22:19:34.176685: such as /outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing/sub-181_ses-1_task-tgng_run-1_bold_calc_despike.nii.gz,
201112-22:19:34,177 nipype.interface INFO:
stderr 2020-11-12T22:19:34.176685: or viewing/combining it with volumes of differing obliquity,
201112-22:19:34,177 nipype.interface INFO:
stderr 2020-11-12T22:19:34.176685: you should consider running:
201112-22:19:34,177 nipype.interface INFO:
stderr 2020-11-12T22:19:34.176685: 3dWarp -deoblique
201112-22:19:34,177 nipype.interface INFO:
stderr 2020-11-12T22:19:34.176685: on this and other oblique datasets in the same session.
201112-22:19:34,177 nipype.interface INFO:
stderr 2020-11-12T22:19:34.176685: See 3dWarp -help for details.
201112-22:19:34,177 nipype.interface INFO:
stderr 2020-11-12T22:19:34.177901:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing/sub-181_ses-1_task-tgng_run-1_bold_calc_despike.nii.gz is 28.005903 degrees from plumb.
201112-22:19:38,723 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_slice_timing_correction_0.slice_timing".
201112-22:19:38,724 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique".
201112-22:19:38,787 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift.nii.gz
201112-22:19:39,41 nipype.interface INFO:
stderr 2020-11-12T22:19:39.041227:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:19:39,41 nipype.interface INFO:
stderr 2020-11-12T22:19:39.041718:++ Authored by: RW Cox
201112-22:19:39,43 nipype.interface INFO:
stderr 2020-11-12T22:19:39.043784:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift.nii.gz
201112-22:19:39,44 nipype.interface INFO:
stderr 2020-11-12T22:19:39.044462: + deoblique
201112-22:19:39,44 nipype.interface INFO:
stderr 2020-11-12T22:19:39.044638: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-22:19:41,383 nipype.interface INFO:
stderr 2020-11-12T22:19:41.383010:++ 3drefit processed 1 datasets
201112-22:19:41,578 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:19:41,579 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient".
201112-22:19:41,586 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift.nii.gz
201112-22:19:44,624 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:19:44,625 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI".
201112-22:19:44,631 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-22:19:44,884 nipype.interface INFO:
stderr 2020-11-12T22:19:44.884247:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:19:44,884 nipype.interface INFO:
stderr 2020-11-12T22:19:44.884707:++ Authored by: KR Hammett & RW Cox
201112-22:19:45,507 nipype.interface INFO:
stderr 2020-11-12T22:19:45.507783:++ Output dataset ./sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-22:19:45,691 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:19:45,693 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref".
201112-22:19:45,700 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-22:19:45,957 nipype.interface INFO:
stderr 2020-11-12T22:19:45.956846:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:19:45,957 nipype.interface INFO:
stderr 2020-11-12T22:19:45.957721:++ Authored by: RW Cox
201112-22:19:45,965 nipype.interface INFO:
stderr 2020-11-12T22:19:45.965365:++ Coarse del was 10, replaced with 3
201112-22:21:35,979 nipype.interface INFO:
stderr 2020-11-12T22:21:35.979456:++ Max displacement in automask = 0.23 (mm) at sub-brick 43
201112-22:21:35,980 nipype.interface INFO:
stderr 2020-11-12T22:21:35.980052:++ Max delta displ in automask = 0.28 (mm) at sub-brick 42
201112-22:21:40,794 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:21:40,796 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion".
201112-22:21:40,806 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-22:21:41,70 nipype.interface INFO:
stderr 2020-11-12T22:21:41.070734:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:21:41,71 nipype.interface INFO:
stderr 2020-11-12T22:21:41.071616:++ Authored by: KR Hammett & RW Cox
201112-22:21:41,881 nipype.interface INFO:
stderr 2020-11-12T22:21:41.881574:++ Output dataset ./sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-22:21:42,90 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:21:42,92 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt".
201112-22:21:42,99 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:22:05,545 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:22:05,555 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_motion_correct".
201112-22:22:05,564 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:22:05,794 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_correct".
201112-22:22:05,796 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull".
201112-22:22:05,804 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-22:22:06,68 nipype.interface INFO:
stderr 2020-11-12T22:22:06.068706:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:22:06,69 nipype.interface INFO:
stderr 2020-11-12T22:22:06.069634:++ Authored by: KR Hammett & RW Cox
201112-22:22:06,748 nipype.interface INFO:
stderr 2020-11-12T22:22:06.748518:++ Output dataset ./sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-22:22:06,934 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:22:06,936 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass".
201112-22:22:06,942 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:22:08,842 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:22:08,844 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate".
201112-22:22:08,850 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:22:09,516 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:22:09,518 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask".
201112-22:22:09,524 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:22:09,962 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:22:09,963 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize".
201112-22:22:09,970 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:22:10,220 nipype.interface INFO:
stderr 2020-11-12T22:22:10.220530:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:23:30,459 nipype.interface INFO:
stderr 2020-11-12T22:23:30.459410: + Pre-processing: IAV..UW[s4932]Im
201112-22:23:30,476 nipype.interface INFO:
stderr 2020-11-12T22:23:30.476379:++ Output dataset ./uni.nii.gz
201112-22:23:30,476 nipype.interface INFO:
stderr 2020-11-12T22:23:30.476862:++ ===== Elapsed = 80.3 sec
201112-22:23:30,683 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:23:30,685 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass".
201112-22:23:30,693 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:23:30,954 nipype.interface INFO:
stderr 2020-11-12T22:23:30.954248:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:23:30,954 nipype.interface INFO:
stderr 2020-11-12T22:23:30.954869:++ Authored by: Emperor Zhark
201112-22:23:30,957 nipype.interface INFO:
stderr 2020-11-12T22:23:30.957866:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:23:30,962 nipype.interface INFO:
stderr 2020-11-12T22:23:30.962802:++ Forming automask
201112-22:23:30,964 nipype.interface INFO:
stderr 2020-11-12T22:23:30.964752: + Fixed clip level = 418.823975
201112-22:23:30,969 nipype.interface INFO:
stderr 2020-11-12T22:23:30.969211: + Used gradual clip level = 345.231903 .. 469.058868
201112-22:23:30,969 nipype.interface INFO:
stderr 2020-11-12T22:23:30.969466: + Number voxels above clip level = 33949
201112-22:23:30,969 nipype.interface INFO:
stderr 2020-11-12T22:23:30.969621: + Clustering voxels ...
201112-22:23:30,970 nipype.interface INFO:
stderr 2020-11-12T22:23:30.970808: + Largest cluster has 33945 voxels
201112-22:23:30,972 nipype.interface INFO:
stderr 2020-11-12T22:23:30.972307: + Clustering voxels ...
201112-22:23:30,973 nipype.interface INFO:
stderr 2020-11-12T22:23:30.973493: + Largest cluster has 33304 voxels
201112-22:23:30,977 nipype.interface INFO:
stderr 2020-11-12T22:23:30.977177: + Filled 1070 voxels in small holes; now have 34374 voxels
201112-22:23:30,980 nipype.interface INFO:
stderr 2020-11-12T22:23:30.980433: + Filled 10 voxels in large holes; now have 34384 voxels
201112-22:23:30,981 nipype.interface INFO:
stderr 2020-11-12T22:23:30.981862: + Clustering voxels ...
201112-22:23:30,983 nipype.interface INFO:
stderr 2020-11-12T22:23:30.983090: + Largest cluster has 34376 voxels
201112-22:23:30,983 nipype.interface INFO:
stderr 2020-11-12T22:23:30.983327: + Clustering non-brain voxels ...
201112-22:23:30,983 nipype.interface INFO:
stderr 2020-11-12T22:23:30.983470: + Clustering voxels ...
201112-22:23:30,986 nipype.interface INFO:
stderr 2020-11-12T22:23:30.986355: + Largest cluster has 104698 voxels
201112-22:23:30,986 nipype.interface INFO:
stderr 2020-11-12T22:23:30.986693: + Mask now has 34566 voxels
201112-22:23:30,986 nipype.interface INFO:
stderr 2020-11-12T22:23:30.986848:++ Dilating automask
201112-22:23:30,994 nipype.interface INFO:
stderr 2020-11-12T22:23:30.994653: + Clustering voxels ...
201112-22:23:30,997 nipype.interface INFO:
stderr 2020-11-12T22:23:30.997352: + Largest cluster has 98082 voxels
201112-22:23:30,997 nipype.interface INFO:
stderr 2020-11-12T22:23:30.997746:++ 41182 voxels in the mask [out of 139264: 29.57%]
201112-22:23:30,997 nipype.interface INFO:
stderr 2020-11-12T22:23:30.997919:++ first 9 x-planes are zero [from R]
201112-22:23:30,998 nipype.interface INFO:
stderr 2020-11-12T22:23:30.998084:++ last 8 x-planes are zero [from L]
201112-22:23:30,998 nipype.interface INFO:
stderr 2020-11-12T22:23:30.998223:++ first 0 y-planes are zero [from P]
201112-22:23:30,998 nipype.interface INFO:
stderr 2020-11-12T22:23:30.998376:++ last 8 y-planes are zero [from A]
201112-22:23:30,998 nipype.interface INFO:
stderr 2020-11-12T22:23:30.998511:++ first 1 z-planes are zero [from I]
201112-22:23:30,998 nipype.interface INFO:
stderr 2020-11-12T22:23:30.998642:++ last 0 z-planes are zero [from S]
201112-22:23:31,3 nipype.interface INFO:
stderr 2020-11-12T22:23:31.003392:++ Output dataset ./uni_mask.nii.gz
201112-22:23:31,3 nipype.interface INFO:
stderr 2020-11-12T22:23:31.003636:++ applying mask to original data
201112-22:23:31,4 nipype.interface INFO:
stderr 2020-11-12T22:23:31.004486:++ Writing masked data
201112-22:23:31,20 nipype.interface INFO:
stderr 2020-11-12T22:23:31.020225:++ Output dataset ./uni_masked.nii.gz
201112-22:23:31,20 nipype.interface INFO:
stderr 2020-11-12T22:23:31.020770:++ CPU time = 0.000000 sec
201112-22:23:31,200 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:23:31,202 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks".
201112-22:23:31,209 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:23:31,648 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:23:31,650 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-22:23:31,655 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-22:23:31,891 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-22:23:31,893 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-22:23:31,899 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:23:32,161 nipype.interface INFO:
stderr 2020-11-12T22:23:32.160855:++ no -frac option: defaulting to -union
201112-22:23:32,161 nipype.interface INFO:
stderr 2020-11-12T22:23:32.161812:++ processing 1 input dataset(s), NN=2...
201112-22:23:32,162 nipype.interface INFO:
stderr 2020-11-12T22:23:32.162061:++ padding all datasets by 0 (for dilations)
201112-22:23:32,169 nipype.interface INFO:
stderr 2020-11-12T22:23:32.169140:++ frac 0 over 1 volumes gives min count 0
201112-22:23:32,169 nipype.interface INFO:
stderr 2020-11-12T22:23:32.169662:++ voxel limits: 0 clipped, 41111 survived, 98153 were zero
201112-22:23:32,169 nipype.interface INFO:
stderr 2020-11-12T22:23:32.169829:++ writing result sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-22:23:32,175 nipype.interface INFO:
stderr 2020-11-12T22:23:32.174986:++ Output dataset ./sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-22:23:32,354 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-22:23:32,356 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_functional_brain_mask".
201112-22:23:32,363 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:23:32,597 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask".
201112-22:23:32,600 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/functional_brain_mask_derivative_0".
201112-22:23:32,606 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-22:23:32,819 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-22:23:32,825 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:23:33,363 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201112-22:23:33,383 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.functional_brain_mask_derivative_0".
201112-22:23:33,384 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain".
201112-22:23:33,393 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:23:33,644 nipype.interface INFO:
stderr 2020-11-12T22:23:33.644243:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:23:33,644 nipype.interface INFO:
stderr 2020-11-12T22:23:33.644750:++ Authored by: A cast of thousands
201112-22:23:36,921 nipype.interface INFO:
stderr 2020-11-12T22:23:36.921364:++ Output dataset ./sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:23:37,124 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:23:37,126 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize".
201112-22:23:37,132 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-22:23:39,577 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:23:39,579 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-22:23:39,585 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:23:40,514 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_mean".
201112-22:23:40,516 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-22:23:40,522 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:23:40,769 nipype.interface INFO:
stderr 2020-11-12T22:23:40.769773:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:23:40,770 nipype.interface INFO:
stderr 2020-11-12T22:23:40.770226:++ Authored by: KR Hammett & RW Cox
201112-22:23:41,354 nipype.interface INFO:
stderr 2020-11-12T22:23:41.354648:++ Output dataset ./sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:23:41,531 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.functional_mean".
201112-22:23:41,532 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-1/std_dev".
201112-22:23:41,539 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-1/std_dev/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:23:41,782 nipype.interface INFO:
stderr 2020-11-12T22:23:41.782596:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:23:41,783 nipype.interface INFO:
stderr 2020-11-12T22:23:41.783306:++ Authored by: KR Hammett & RW Cox
201112-22:23:42,322 nipype.interface INFO:
stderr 2020-11-12T22:23:42.322192:++ Output dataset ./sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:23:42,523 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev".
201112-22:23:42,525 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_functional_preprocessed".
201112-22:23:42,532 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:23:42,764 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed".
201112-22:23:42,766 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize".
201112-22:23:42,771 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:23:43,871 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:23:43,873 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_functional_preprocessed_mask".
201112-22:23:43,881 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:23:44,115 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed_mask".
201112-22:23:44,117 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean".
201112-22:23:44,123 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:23:44,364 nipype.interface INFO:
stderr 2020-11-12T22:23:44.364488:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:23:44,364 nipype.interface INFO:
stderr 2020-11-12T22:23:44.364856:++ Authored by: KR Hammett & RW Cox
201112-22:23:44,929 nipype.interface INFO:
stderr 2020-11-12T22:23:44.929453:++ Output dataset ./sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-22:23:45,138 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:23:45,140 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_mean_functional".
201112-22:23:45,147 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:23:45,386 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional".
201112-22:23:45,389 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/norm_motion_params".
201112-22:23:45,395 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:23:45,636 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:23:45,638 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_slice_time_corrected".
201112-22:23:45,646 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:23:45,882 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_slice_time_corrected".
201112-22:23:45,884 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_raw_functional".
201112-22:23:45,891 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:23:46,238 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_raw_functional".
201112-22:23:46,240 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_tgng_run-1/check_func_scan".
201112-22:23:46,273 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:23:46,511 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.check_func_scan".
201112-22:23:46,523 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_rest_run-1/select_scan_params".
201112-22:23:46,553 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:23:46,793 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.select_scan_params".
201112-22:23:46,805 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_rest_run-1/s3_scan_params".
201112-22:23:46,813 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:23:47,47 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.s3_scan_params".
201112-22:23:47,51 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.scan_params_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/scan_params_0".
201112-22:23:47,61 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:23:47,295 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.scan_params_0".
201112-22:23:47,298 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_rest_run-1/selectrest".
201112-22:23:47,331 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:23:47,574 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.selectrest".
201112-22:23:47,584 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_rest_run-1/check_for_s3".
201112-22:23:47,589 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:23:47,907 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.check_for_s3".
201112-22:23:47,908 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-181_ses-1/edit_func_0/_scan_rest_run-1/func_get_idx".
201112-22:23:47,914 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:23:48,148 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.edit_func_0.func_get_idx".
201112-22:23:48,150 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-181_ses-1/edit_func_0/_scan_rest_run-1/func_drop_trs".
201112-22:23:48,156 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-181/ses-1/func/sub-181_ses-1_task-rest_run-1_bold.nii.gz[0..179] -expr "a" -prefix sub-181_ses-1_task-rest_run-1_bold_calc.nii.gz
201112-22:23:48,405 nipype.interface INFO:
stderr 2020-11-12T22:23:48.405659:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:23:48,406 nipype.interface INFO:
stderr 2020-11-12T22:23:48.406145:++ Authored by: A cast of thousands
201112-22:23:56,523 nipype.interface INFO:
stderr 2020-11-12T22:23:56.523211:++ Output dataset ./sub-181_ses-1_task-rest_run-1_bold_calc.nii.gz
201112-22:23:56,724 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.edit_func_0.func_drop_trs".
201112-22:23:56,725 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique".
201112-22:23:56,780 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-181_ses-1_task-rest_run-1_bold_calc.nii.gz
201112-22:23:57,22 nipype.interface INFO:
stderr 2020-11-12T22:23:57.022130:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:23:57,22 nipype.interface INFO:
stderr 2020-11-12T22:23:57.022515:++ Authored by: RW Cox
201112-22:23:57,25 nipype.interface INFO:
stderr 2020-11-12T22:23:57.025126:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-181_ses-1_task-rest_run-1_bold_calc.nii.gz
201112-22:23:57,25 nipype.interface INFO:
stderr 2020-11-12T22:23:57.025707: + deoblique
201112-22:23:57,25 nipype.interface INFO:
stderr 2020-11-12T22:23:57.025883: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-181_ses-1_task-rest_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-181_ses-1_task-rest_run-1_bold_calc.nii.gz in NIFTI storage)
201112-22:24:02,555 nipype.interface INFO:
stderr 2020-11-12T22:24:02.555225:++ 3drefit processed 1 datasets
201112-22:24:02,760 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:24:02,762 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient".
201112-22:24:02,773 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-1_task-rest_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient/sub-181_ses-1_task-rest_run-1_bold_calc.nii.gz
201112-22:24:09,114 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:24:09,115 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI".
201112-22:24:09,123 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-rest_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI/sub-181_ses-1_task-rest_run-1_bold_calc_resample.nii.gz
201112-22:24:09,381 nipype.interface INFO:
stderr 2020-11-12T22:24:09.381766:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:24:09,382 nipype.interface INFO:
stderr 2020-11-12T22:24:09.382804:++ Authored by: KR Hammett & RW Cox
201112-22:24:09,986 nipype.interface INFO:
stderr 2020-11-12T22:24:09.986009:++ Output dataset ./sub-181_ses-1_task-rest_run-1_bold_calc_resample_tstat.nii.gz
201112-22:24:10,172 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:24:10,174 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_generate_ref".
201112-22:24:10,182 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-1_task-rest_run-1_bold_calc_resample.1D -1Dmatrix_save sub-181_ses-1_task-rest_run-1_bold_calc_resample.aff12.1D -prefix sub-181_ses-1_task-rest_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI/sub-181_ses-1_task-rest_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-1_task-rest_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_generate_ref/sub-181_ses-1_task-rest_run-1_bold_calc_resample.nii.gz
201112-22:24:10,456 nipype.interface INFO:
stderr 2020-11-12T22:24:10.456260:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:24:10,457 nipype.interface INFO:
stderr 2020-11-12T22:24:10.457431:++ Authored by: RW Cox
201112-22:24:10,467 nipype.interface INFO:
stderr 2020-11-12T22:24:10.467872:++ Coarse del was 10, replaced with 3
201112-22:26:37,304 nipype.interface INFO:
stderr 2020-11-12T22:26:37.304733:++ Max displacement in automask = 0.48 (mm) at sub-brick 3
201112-22:26:37,305 nipype.interface INFO:
stderr 2020-11-12T22:26:37.305426:++ Max delta displ in automask = 0.42 (mm) at sub-brick 92
201112-22:26:42,776 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:26:42,778 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion".
201112-22:26:42,786 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-rest_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion/sub-181_ses-1_task-rest_run-1_bold_calc_resample_volreg.nii.gz
201112-22:26:43,48 nipype.interface INFO:
stderr 2020-11-12T22:26:43.047852:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:26:43,48 nipype.interface INFO:
stderr 2020-11-12T22:26:43.048805:++ Authored by: KR Hammett & RW Cox
201112-22:26:43,662 nipype.interface INFO:
stderr 2020-11-12T22:26:43.662781:++ Output dataset ./sub-181_ses-1_task-rest_run-1_bold_calc_resample_volreg_tstat.nii.gz
201112-22:26:43,843 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:26:43,845 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt".
201112-22:26:43,852 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient/sub-181_ses-1_task-rest_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt/sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion/sub-181_ses-1_task-rest_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:27:30,829 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:27:30,839 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/calculate_FDJ".
201112-22:27:30,848 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:27:31,82 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:27:31,84 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_frame_wise_displacement_jenkinson".
201112-22:27:31,91 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:27:31,325 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_jenkinson".
201112-22:27:31,326 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_max_displacement".
201112-22:27:31,337 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:27:31,574 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_max_displacement".
201112-22:27:31,576 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_coordinate_transformation".
201112-22:27:31,601 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:27:31,885 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_coordinate_transformation".
201112-22:27:31,900 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull".
201112-22:27:31,908 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull/sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf.nii.gz
201112-22:27:32,166 nipype.interface INFO:
stderr 2020-11-12T22:27:32.166253:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:27:32,166 nipype.interface INFO:
stderr 2020-11-12T22:27:32.166726:++ Authored by: KR Hammett & RW Cox
201112-22:27:32,824 nipype.interface INFO:
stderr 2020-11-12T22:27:32.824354:++ Output dataset ./sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat.nii.gz
201112-22:27:33,1 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:27:33,2 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass".
201112-22:27:33,9 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull/sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:27:34,891 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:27:34,892 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate".
201112-22:27:34,898 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate/sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:27:35,455 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:27:35,457 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_mask".
201112-22:27:35,463 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate/sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_mask/sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:27:35,903 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:27:35,904 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/unifize".
201112-22:27:35,911 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/unifize/sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:27:36,160 nipype.interface INFO:
stderr 2020-11-12T22:27:36.160680:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:28:34,748 nipype.interface INFO:
stderr 2020-11-12T22:28:34.748688: + Pre-processing: IAV..UW[s3627]Im
201112-22:28:34,764 nipype.interface INFO:
stderr 2020-11-12T22:28:34.764711:++ Output dataset ./uni.nii.gz
201112-22:28:34,765 nipype.interface INFO:
stderr 2020-11-12T22:28:34.765150:++ ===== Elapsed = 58.6 sec
201112-22:28:34,975 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:28:34,977 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass".
201112-22:28:34,983 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:28:35,243 nipype.interface INFO:
stderr 2020-11-12T22:28:35.243367:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:28:35,243 nipype.interface INFO:
stderr 2020-11-12T22:28:35.243908:++ Authored by: Emperor Zhark
201112-22:28:35,246 nipype.interface INFO:
stderr 2020-11-12T22:28:35.246723:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:28:35,251 nipype.interface INFO:
stderr 2020-11-12T22:28:35.251800:++ Forming automask
201112-22:28:35,253 nipype.interface INFO:
stderr 2020-11-12T22:28:35.253725: + Fixed clip level = 453.726257
201112-22:28:35,258 nipype.interface INFO:
stderr 2020-11-12T22:28:35.258305: + Used gradual clip level = 387.563538 .. 496.774017
201112-22:28:35,258 nipype.interface INFO:
stderr 2020-11-12T22:28:35.258671: + Number voxels above clip level = 19396
201112-22:28:35,258 nipype.interface INFO:
stderr 2020-11-12T22:28:35.258825: + Clustering voxels ...
201112-22:28:35,259 nipype.interface INFO:
stderr 2020-11-12T22:28:35.259700: + Largest cluster has 19391 voxels
201112-22:28:35,260 nipype.interface INFO:
stderr 2020-11-12T22:28:35.260856: + Clustering voxels ...
201112-22:28:35,261 nipype.interface INFO:
stderr 2020-11-12T22:28:35.261725: + Largest cluster has 18791 voxels
201112-22:28:35,265 nipype.interface INFO:
stderr 2020-11-12T22:28:35.265013: + Filled 568 voxels in small holes; now have 19359 voxels
201112-22:28:35,268 nipype.interface INFO:
stderr 2020-11-12T22:28:35.268199: + Filled 8 voxels in large holes; now have 19367 voxels
201112-22:28:35,269 nipype.interface INFO:
stderr 2020-11-12T22:28:35.269339: + Clustering voxels ...
201112-22:28:35,270 nipype.interface INFO:
stderr 2020-11-12T22:28:35.270215: + Largest cluster has 19365 voxels
201112-22:28:35,270 nipype.interface INFO:
stderr 2020-11-12T22:28:35.270448: + Clustering non-brain voxels ...
201112-22:28:35,270 nipype.interface INFO:
stderr 2020-11-12T22:28:35.270602: + Clustering voxels ...
201112-22:28:35,273 nipype.interface INFO:
stderr 2020-11-12T22:28:35.273810: + Largest cluster has 115769 voxels
201112-22:28:35,274 nipype.interface INFO:
stderr 2020-11-12T22:28:35.274164: + Mask now has 19399 voxels
201112-22:28:35,274 nipype.interface INFO:
stderr 2020-11-12T22:28:35.274324:++ Dilating automask
201112-22:28:35,281 nipype.interface INFO:
stderr 2020-11-12T22:28:35.281497: + Clustering voxels ...
201112-22:28:35,284 nipype.interface INFO:
stderr 2020-11-12T22:28:35.284658: + Largest cluster has 111171 voxels
201112-22:28:35,285 nipype.interface INFO:
stderr 2020-11-12T22:28:35.285088:++ 23997 voxels in the mask [out of 135168: 17.75%]
201112-22:28:35,285 nipype.interface INFO:
stderr 2020-11-12T22:28:35.285272:++ first 13 x-planes are zero [from R]
201112-22:28:35,285 nipype.interface INFO:
stderr 2020-11-12T22:28:35.285437:++ last 11 x-planes are zero [from L]
201112-22:28:35,285 nipype.interface INFO:
stderr 2020-11-12T22:28:35.285578:++ first 3 y-planes are zero [from P]
201112-22:28:35,285 nipype.interface INFO:
stderr 2020-11-12T22:28:35.285729:++ last 10 y-planes are zero [from A]
201112-22:28:35,285 nipype.interface INFO:
stderr 2020-11-12T22:28:35.285889:++ first 3 z-planes are zero [from I]
201112-22:28:35,286 nipype.interface INFO:
stderr 2020-11-12T22:28:35.286042:++ last 3 z-planes are zero [from S]
201112-22:28:35,290 nipype.interface INFO:
stderr 2020-11-12T22:28:35.290398:++ Output dataset ./uni_mask.nii.gz
201112-22:28:35,290 nipype.interface INFO:
stderr 2020-11-12T22:28:35.290643:++ applying mask to original data
201112-22:28:35,291 nipype.interface INFO:
stderr 2020-11-12T22:28:35.291444:++ Writing masked data
201112-22:28:35,303 nipype.interface INFO:
stderr 2020-11-12T22:28:35.303024:++ Output dataset ./uni_masked.nii.gz
201112-22:28:35,303 nipype.interface INFO:
stderr 2020-11-12T22:28:35.303604:++ CPU time = 0.000000 sec
201112-22:28:35,487 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:28:35,489 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks".
201112-22:28:35,496 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:28:35,941 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:28:35,943 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/cal_DVARS".
201112-22:28:35,953 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-22:28:36,795 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-22:28:36,796 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_extract_brain".
201112-22:28:36,806 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt/sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:28:37,57 nipype.interface INFO:
stderr 2020-11-12T22:28:37.057407:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:28:37,57 nipype.interface INFO:
stderr 2020-11-12T22:28:37.057863:++ Authored by: A cast of thousands
201112-22:28:40,518 nipype.interface INFO:
stderr 2020-11-12T22:28:40.517817:++ Output dataset ./sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:28:40,731 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:28:40,733 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize".
201112-22:28:40,740 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_extract_brain/sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-22:28:43,96 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:28:43,98 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mask_normalize".
201112-22:28:43,105 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mask_normalize/sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:28:44,414 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:28:44,415 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean".
201112-22:28:44,421 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean/sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:28:44,679 nipype.interface INFO:
stderr 2020-11-12T22:28:44.679276:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:28:44,679 nipype.interface INFO:
stderr 2020-11-12T22:28:44.679737:++ Authored by: KR Hammett & RW Cox
201112-22:28:45,58 nipype.interface INFO:
stderr 2020-11-12T22:28:45.058849:++ Output dataset ./sub-181_ses-1_task-rest_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-22:28:45,243 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:28:45,244 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/norm_motion_params".
201112-22:28:45,252 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:28:45,487 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:28:45,488 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_motion_0/_scan_rest_run-1/motion_plot".
201112-22:28:45,494 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-22:28:45,965 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_motion_0.motion_plot".
201112-22:28:45,966 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_qc___movement_trans_plot".
201112-22:28:45,974 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:28:46,188 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___movement_trans_plot/_scan_rest_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/movement_trans_plot/_scan_rest_run-1/motion_trans_plot.png
201112-22:28:46,209 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_trans_plot".
201112-22:28:46,211 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_qc___movement_rot_plot".
201112-22:28:46,218 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:28:46,431 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___movement_rot_plot/_scan_rest_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/movement_rot_plot/_scan_rest_run-1/motion_rot_plot.png
201112-22:28:46,455 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_rot_plot".
201112-22:28:46,456 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/calc_motion_parameters".
201112-22:28:46,466 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:28:46,707 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-22:28:46,709 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_motion_params".
201112-22:28:46,716 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:28:46,951 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_params".
201112-22:28:46,953 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/calculate_FD".
201112-22:28:46,957 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-22:28:47,195 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-22:28:47,197 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_frame_wise_displacement_power".
201112-22:28:47,204 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:28:47,440 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_power".
201112-22:28:47,442 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/calc_power_parameters".
201112-22:28:47,448 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:28:47,692 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-22:28:47,693 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_power_params".
201112-22:28:47,701 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:28:47,939 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_power_params".
201112-22:28:47,941 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_movement_parameters".
201112-22:28:47,949 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:28:48,186 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_movement_parameters".
201112-22:28:48,189 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/func_despiked_0".
201112-22:28:48,195 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-181_ses-1_task-rest_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/func_despiked_0/sub-181_ses-1_task-rest_run-1_bold_calc.nii.gz
201112-22:28:48,464 nipype.interface INFO:
stderr 2020-11-12T22:28:48.464367:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:28:48,465 nipype.interface INFO:
stderr 2020-11-12T22:28:48.464940:++ Authored by: RW Cox
201112-22:28:48,469 nipype.interface INFO:
stderr 2020-11-12T22:28:48.469121:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:28:48,469 nipype.interface INFO:
stderr 2020-11-12T22:28:48.469121: such as /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/func_despiked_0/sub-181_ses-1_task-rest_run-1_bold_calc.nii.gz,
201112-22:28:48,469 nipype.interface INFO:
stderr 2020-11-12T22:28:48.469121: or viewing/combining it with volumes of differing obliquity,
201112-22:28:48,469 nipype.interface INFO:
stderr 2020-11-12T22:28:48.469121: you should consider running:
201112-22:28:48,469 nipype.interface INFO:
stderr 2020-11-12T22:28:48.469121: 3dWarp -deoblique
201112-22:28:48,469 nipype.interface INFO:
stderr 2020-11-12T22:28:48.469121: on this and other oblique datasets in the same session.
201112-22:28:48,469 nipype.interface INFO:
stderr 2020-11-12T22:28:48.469121: See 3dWarp -help for details.
201112-22:28:48,470 nipype.interface INFO:
stderr 2020-11-12T22:28:48.469996:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/func_despiked_0/sub-181_ses-1_task-rest_run-1_bold_calc.nii.gz is 28.005909 degrees from plumb.
201112-22:28:48,470 nipype.interface INFO:
stderr 2020-11-12T22:28:48.470189:++ Input dataset is in short format, but output will be in float format
201112-22:28:48,470 nipype.interface INFO:
stderr 2020-11-12T22:28:48.470361:++ ignoring first 0 time points, using last 180
201112-22:28:48,470 nipype.interface INFO:
stderr 2020-11-12T22:28:48.470530:++ using 180 time points => -corder 6
201112-22:28:48,470 nipype.interface INFO:
stderr 2020-11-12T22:28:48.470691:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/func_despiked_0/sub-181_ses-1_task-rest_run-1_bold_calc.nii.gz
201112-22:28:49,142 nipype.interface INFO:
stderr 2020-11-12T22:28:49.142526:++ 22817 voxels in the automask [out of 135168 in dataset]
201112-22:28:49,148 nipype.interface INFO:
stderr 2020-11-12T22:28:49.148387:++ 43061 voxels in the dilated automask [out of 135168 in dataset]
201112-22:28:49,164 nipype.interface INFO:
stderr 2020-11-12T22:28:49.164154:++ Procesing time series with OLD model fit algorithm
201112-22:28:49,164 nipype.interface INFO:
stderr 2020-11-12T22:28:49.164527:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-22:28:49,164 nipype.interface INFO:
stderr 2020-11-12T22:28:49.164693: + [ 3.457% .. 0.072% of normal distribution]
201112-22:28:49,164 nipype.interface INFO:
stderr 2020-11-12T22:28:49.164846: + [ 8.839% .. 3.125% of Laplace distribution]
201112-22:28:49,165 nipype.interface INFO:
stderr 2020-11-12T22:28:49.165042:++ start OpenMP thread #0
201112-22:28:57,961 nipype.interface INFO:
stderr 2020-11-12T22:28:57.961627:...................
201112-22:28:57,962 nipype.interface INFO:
stderr 2020-11-12T22:28:57.962249:++ Elapsed despike time = 8s 797ms
201112-22:28:57,962 nipype.interface INFO:
stderr 2020-11-12T22:28:57.962420:
201112-22:28:57,963 nipype.interface INFO:
stderr 2020-11-12T22:28:57.963576:++ FINAL: 7749720 data points, 480761 edits [6.204%], 46318 big edits [0.598%]
201112-22:29:02,64 nipype.interface INFO:
stderr 2020-11-12T22:29:02.064546:++ Output dataset ./sub-181_ses-1_task-rest_run-1_bold_calc_despike.nii.gz
201112-22:29:02,294 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_despiked_0".
201112-22:29:02,296 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_rest_run-1/slice_timing".
201112-22:29:02,305 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:29:02,306 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_rest_run-1/slice_timing/sub-181_ses-1_task-rest_run-1_bold_calc_despike.nii.gz
201112-22:29:02,520 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:29:02,572 nipype.interface INFO:
stderr 2020-11-12T22:29:02.572520:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:29:02,577 nipype.interface INFO:
stderr 2020-11-12T22:29:02.577446:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:29:02,577 nipype.interface INFO:
stderr 2020-11-12T22:29:02.577446: such as /outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_rest_run-1/slice_timing/sub-181_ses-1_task-rest_run-1_bold_calc_despike.nii.gz,
201112-22:29:02,577 nipype.interface INFO:
stderr 2020-11-12T22:29:02.577446: or viewing/combining it with volumes of differing obliquity,
201112-22:29:02,577 nipype.interface INFO:
stderr 2020-11-12T22:29:02.577446: you should consider running:
201112-22:29:02,578 nipype.interface INFO:
stderr 2020-11-12T22:29:02.577446: 3dWarp -deoblique
201112-22:29:02,578 nipype.interface INFO:
stderr 2020-11-12T22:29:02.577446: on this and other oblique datasets in the same session.
201112-22:29:02,578 nipype.interface INFO:
stderr 2020-11-12T22:29:02.577446: See 3dWarp -help for details.
201112-22:29:02,578 nipype.interface INFO:
stderr 2020-11-12T22:29:02.578456:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_rest_run-1/slice_timing/sub-181_ses-1_task-rest_run-1_bold_calc_despike.nii.gz is 28.005909 degrees from plumb.
201112-22:29:07,472 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_slice_timing_correction_0.slice_timing".
201112-22:29:07,474 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique".
201112-22:29:07,537 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift.nii.gz
201112-22:29:07,788 nipype.interface INFO:
stderr 2020-11-12T22:29:07.788377:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:29:07,788 nipype.interface INFO:
stderr 2020-11-12T22:29:07.788846:++ Authored by: RW Cox
201112-22:29:07,801 nipype.interface INFO:
stderr 2020-11-12T22:29:07.801170:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift.nii.gz
201112-22:29:07,802 nipype.interface INFO:
stderr 2020-11-12T22:29:07.802234: + deoblique
201112-22:29:07,802 nipype.interface INFO:
stderr 2020-11-12T22:29:07.802535: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-22:29:10,256 nipype.interface INFO:
stderr 2020-11-12T22:29:10.256005:++ 3drefit processed 1 datasets
201112-22:29:10,445 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:29:10,446 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient".
201112-22:29:10,453 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift.nii.gz
201112-22:29:13,643 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:29:13,644 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI".
201112-22:29:13,651 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-22:29:13,905 nipype.interface INFO:
stderr 2020-11-12T22:29:13.904974:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:29:13,905 nipype.interface INFO:
stderr 2020-11-12T22:29:13.905452:++ Authored by: KR Hammett & RW Cox
201112-22:29:14,672 nipype.interface INFO:
stderr 2020-11-12T22:29:14.672454:++ Output dataset ./sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-22:29:14,858 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:29:14,860 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_generate_ref".
201112-22:29:14,872 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_generate_ref/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-22:29:15,132 nipype.interface INFO:
stderr 2020-11-12T22:29:15.132291:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:29:15,133 nipype.interface INFO:
stderr 2020-11-12T22:29:15.133000:++ Authored by: RW Cox
201112-22:29:15,144 nipype.interface INFO:
stderr 2020-11-12T22:29:15.144334:++ Coarse del was 10, replaced with 3
201112-22:31:41,826 nipype.interface INFO:
stderr 2020-11-12T22:31:41.826416:++ Max displacement in automask = 0.46 (mm) at sub-brick 3
201112-22:31:41,827 nipype.interface INFO:
stderr 2020-11-12T22:31:41.827364:++ Max delta displ in automask = 0.31 (mm) at sub-brick 92
201112-22:31:48,320 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:31:48,322 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion".
201112-22:31:48,330 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-22:31:48,593 nipype.interface INFO:
stderr 2020-11-12T22:31:48.593751:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:31:48,594 nipype.interface INFO:
stderr 2020-11-12T22:31:48.594619:++ Authored by: KR Hammett & RW Cox
201112-22:31:49,666 nipype.interface INFO:
stderr 2020-11-12T22:31:49.666728:++ Output dataset ./sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-22:31:49,879 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:31:49,881 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt".
201112-22:31:49,889 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:32:33,454 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:32:33,466 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_motion_correct".
201112-22:32:33,475 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:32:33,711 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_correct".
201112-22:32:33,713 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull".
201112-22:32:33,720 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-22:32:33,980 nipype.interface INFO:
stderr 2020-11-12T22:32:33.980278:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:32:33,980 nipype.interface INFO:
stderr 2020-11-12T22:32:33.980919:++ Authored by: KR Hammett & RW Cox
201112-22:32:34,806 nipype.interface INFO:
stderr 2020-11-12T22:32:34.806045:++ Output dataset ./sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-22:32:35,25 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:32:35,27 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass".
201112-22:32:35,33 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:32:36,917 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:32:36,919 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate".
201112-22:32:36,925 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:32:37,492 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:32:37,494 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_mask".
201112-22:32:37,500 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_mask/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:32:37,942 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:32:37,943 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/unifize".
201112-22:32:37,949 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/unifize/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:32:38,199 nipype.interface INFO:
stderr 2020-11-12T22:32:38.199333:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:33:36,844 nipype.interface INFO:
stderr 2020-11-12T22:33:36.844209: + Pre-processing: IAV..UW[s3629]Im
201112-22:33:36,857 nipype.interface INFO:
stderr 2020-11-12T22:33:36.857668:++ Output dataset ./uni.nii.gz
201112-22:33:36,858 nipype.interface INFO:
stderr 2020-11-12T22:33:36.858183:++ ===== Elapsed = 58.7 sec
201112-22:33:37,54 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:33:37,56 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass".
201112-22:33:37,62 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:33:37,320 nipype.interface INFO:
stderr 2020-11-12T22:33:37.320410:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:33:37,321 nipype.interface INFO:
stderr 2020-11-12T22:33:37.321072:++ Authored by: Emperor Zhark
201112-22:33:37,323 nipype.interface INFO:
stderr 2020-11-12T22:33:37.323889:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:33:37,329 nipype.interface INFO:
stderr 2020-11-12T22:33:37.329286:++ Forming automask
201112-22:33:37,331 nipype.interface INFO:
stderr 2020-11-12T22:33:37.331278: + Fixed clip level = 453.542664
201112-22:33:37,335 nipype.interface INFO:
stderr 2020-11-12T22:33:37.335760: + Used gradual clip level = 387.637054 .. 496.506348
201112-22:33:37,336 nipype.interface INFO:
stderr 2020-11-12T22:33:37.336031: + Number voxels above clip level = 19392
201112-22:33:37,336 nipype.interface INFO:
stderr 2020-11-12T22:33:37.336236: + Clustering voxels ...
201112-22:33:37,337 nipype.interface INFO:
stderr 2020-11-12T22:33:37.337576: + Largest cluster has 19387 voxels
201112-22:33:37,338 nipype.interface INFO:
stderr 2020-11-12T22:33:37.338735: + Clustering voxels ...
201112-22:33:37,339 nipype.interface INFO:
stderr 2020-11-12T22:33:37.339602: + Largest cluster has 18795 voxels
201112-22:33:37,343 nipype.interface INFO:
stderr 2020-11-12T22:33:37.343136: + Filled 568 voxels in small holes; now have 19363 voxels
201112-22:33:37,346 nipype.interface INFO:
stderr 2020-11-12T22:33:37.346278: + Filled 8 voxels in large holes; now have 19371 voxels
201112-22:33:37,347 nipype.interface INFO:
stderr 2020-11-12T22:33:37.347362: + Clustering voxels ...
201112-22:33:37,348 nipype.interface INFO:
stderr 2020-11-12T22:33:37.348218: + Largest cluster has 19369 voxels
201112-22:33:37,348 nipype.interface INFO:
stderr 2020-11-12T22:33:37.348442: + Clustering non-brain voxels ...
201112-22:33:37,348 nipype.interface INFO:
stderr 2020-11-12T22:33:37.348587: + Clustering voxels ...
201112-22:33:37,351 nipype.interface INFO:
stderr 2020-11-12T22:33:37.351726: + Largest cluster has 115765 voxels
201112-22:33:37,352 nipype.interface INFO:
stderr 2020-11-12T22:33:37.352054: + Mask now has 19403 voxels
201112-22:33:37,352 nipype.interface INFO:
stderr 2020-11-12T22:33:37.352208:++ Dilating automask
201112-22:33:37,359 nipype.interface INFO:
stderr 2020-11-12T22:33:37.359324: + Clustering voxels ...
201112-22:33:37,361 nipype.interface INFO:
stderr 2020-11-12T22:33:37.361865: + Largest cluster has 111165 voxels
201112-22:33:37,362 nipype.interface INFO:
stderr 2020-11-12T22:33:37.362237:++ 24003 voxels in the mask [out of 135168: 17.76%]
201112-22:33:37,362 nipype.interface INFO:
stderr 2020-11-12T22:33:37.362428:++ first 13 x-planes are zero [from R]
201112-22:33:37,362 nipype.interface INFO:
stderr 2020-11-12T22:33:37.362592:++ last 11 x-planes are zero [from L]
201112-22:33:37,362 nipype.interface INFO:
stderr 2020-11-12T22:33:37.362732:++ first 3 y-planes are zero [from P]
201112-22:33:37,362 nipype.interface INFO:
stderr 2020-11-12T22:33:37.362884:++ last 10 y-planes are zero [from A]
201112-22:33:37,363 nipype.interface INFO:
stderr 2020-11-12T22:33:37.363036:++ first 4 z-planes are zero [from I]
201112-22:33:37,363 nipype.interface INFO:
stderr 2020-11-12T22:33:37.363176:++ last 3 z-planes are zero [from S]
201112-22:33:37,368 nipype.interface INFO:
stderr 2020-11-12T22:33:37.368242:++ Output dataset ./uni_mask.nii.gz
201112-22:33:37,368 nipype.interface INFO:
stderr 2020-11-12T22:33:37.368468:++ applying mask to original data
201112-22:33:37,369 nipype.interface INFO:
stderr 2020-11-12T22:33:37.369604:++ Writing masked data
201112-22:33:37,381 nipype.interface INFO:
stderr 2020-11-12T22:33:37.381574:++ Output dataset ./uni_masked.nii.gz
201112-22:33:37,382 nipype.interface INFO:
stderr 2020-11-12T22:33:37.381982:++ CPU time = 0.000000 sec
201112-22:33:37,558 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:33:37,560 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks".
201112-22:33:37,566 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:33:37,996 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:33:37,998 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-22:33:38,3 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-22:33:38,235 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-22:33:38,236 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-22:33:38,243 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:33:38,501 nipype.interface INFO:
stderr 2020-11-12T22:33:38.500872:++ no -frac option: defaulting to -union
201112-22:33:38,501 nipype.interface INFO:
stderr 2020-11-12T22:33:38.501551:++ processing 1 input dataset(s), NN=2...
201112-22:33:38,501 nipype.interface INFO:
stderr 2020-11-12T22:33:38.501788:++ padding all datasets by 0 (for dilations)
201112-22:33:38,509 nipype.interface INFO:
stderr 2020-11-12T22:33:38.509287:++ frac 0 over 1 volumes gives min count 0
201112-22:33:38,509 nipype.interface INFO:
stderr 2020-11-12T22:33:38.509790:++ voxel limits: 0 clipped, 23979 survived, 111189 were zero
201112-22:33:38,510 nipype.interface INFO:
stderr 2020-11-12T22:33:38.510032:++ writing result sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-22:33:38,515 nipype.interface INFO:
stderr 2020-11-12T22:33:38.515639:++ Output dataset ./sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-22:33:38,685 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-22:33:38,686 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_functional_brain_mask".
201112-22:33:38,695 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:33:38,925 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask".
201112-22:33:38,927 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/functional_brain_mask_derivative_0".
201112-22:33:38,931 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-22:33:39,142 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-22:33:39,147 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:33:39,692 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201112-22:33:39,712 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.functional_brain_mask_derivative_0".
201112-22:33:39,714 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_extract_brain".
201112-22:33:39,722 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:33:39,976 nipype.interface INFO:
stderr 2020-11-12T22:33:39.976606:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:33:39,977 nipype.interface INFO:
stderr 2020-11-12T22:33:39.977141:++ Authored by: A cast of thousands
201112-22:33:43,736 nipype.interface INFO:
stderr 2020-11-12T22:33:43.735861:++ Output dataset ./sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:33:43,937 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:33:43,939 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize".
201112-22:33:43,945 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_extract_brain/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-22:33:46,465 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:33:46,466 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-22:33:46,473 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:33:47,529 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_mean".
201112-22:33:47,530 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-22:33:47,536 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:33:47,792 nipype.interface INFO:
stderr 2020-11-12T22:33:47.792428:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:33:47,793 nipype.interface INFO:
stderr 2020-11-12T22:33:47.793076:++ Authored by: KR Hammett & RW Cox
201112-22:33:48,535 nipype.interface INFO:
stderr 2020-11-12T22:33:48.535878:++ Output dataset ./sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:33:48,755 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.functional_mean".
201112-22:33:48,758 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_rest_run-1/std_dev".
201112-22:33:48,765 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_rest_run-1/std_dev/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:33:49,30 nipype.interface INFO:
stderr 2020-11-12T22:33:49.030380:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:33:49,30 nipype.interface INFO:
stderr 2020-11-12T22:33:49.030914:++ Authored by: KR Hammett & RW Cox
201112-22:33:49,708 nipype.interface INFO:
stderr 2020-11-12T22:33:49.708187:++ Output dataset ./sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:33:49,924 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev".
201112-22:33:49,925 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_functional_preprocessed".
201112-22:33:49,933 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:33:50,171 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed".
201112-22:33:50,173 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mask_normalize".
201112-22:33:50,180 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mask_normalize/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:33:51,537 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:33:51,539 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_functional_preprocessed_mask".
201112-22:33:51,547 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:33:51,781 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed_mask".
201112-22:33:51,784 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean".
201112-22:33:51,789 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:33:52,53 nipype.interface INFO:
stderr 2020-11-12T22:33:52.053727:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:33:52,54 nipype.interface INFO:
stderr 2020-11-12T22:33:52.054549:++ Authored by: KR Hammett & RW Cox
201112-22:33:52,765 nipype.interface INFO:
stderr 2020-11-12T22:33:52.765403:++ Output dataset ./sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-22:33:52,958 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:33:52,960 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_mean_functional".
201112-22:33:52,968 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:33:53,206 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional".
201112-22:33:53,209 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/norm_motion_params".
201112-22:33:53,216 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:33:53,455 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:33:53,456 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_slice_time_corrected".
201112-22:33:53,464 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:33:53,703 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_slice_time_corrected".
201112-22:33:53,704 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_raw_functional".
201112-22:33:53,714 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:33:54,102 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_raw_functional".
201112-22:33:54,104 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_rest_run-1/check_func_scan".
201112-22:33:54,142 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:33:54,389 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.check_func_scan".
201112-22:33:54,400 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_ms_run-1/select_scan_params".
201112-22:33:54,429 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:33:54,671 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.select_scan_params".
201112-22:33:54,683 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_ms_run-1/s3_scan_params".
201112-22:33:54,692 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:33:54,925 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.s3_scan_params".
201112-22:33:54,928 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.scan_params_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/scan_params_0".
201112-22:33:54,938 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:33:55,168 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.scan_params_0".
201112-22:33:55,170 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_ms_run-1/selectrest".
201112-22:33:55,200 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:33:55,434 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.selectrest".
201112-22:33:55,444 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_ms_run-1/check_for_s3".
201112-22:33:55,449 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:33:55,789 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.check_for_s3".
201112-22:33:55,790 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-181_ses-1/edit_func_0/_scan_ms_run-1/func_get_idx".
201112-22:33:55,796 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:33:56,35 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.edit_func_0.func_get_idx".
201112-22:33:56,36 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-181_ses-1/edit_func_0/_scan_ms_run-1/func_drop_trs".
201112-22:33:56,43 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-181/ses-1/func/sub-181_ses-1_task-ms_run-1_bold.nii.gz[0..142] -expr "a" -prefix sub-181_ses-1_task-ms_run-1_bold_calc.nii.gz
201112-22:33:56,303 nipype.interface INFO:
stderr 2020-11-12T22:33:56.303295:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:33:56,303 nipype.interface INFO:
stderr 2020-11-12T22:33:56.303851:++ Authored by: A cast of thousands
201112-22:34:02,648 nipype.interface INFO:
stderr 2020-11-12T22:34:02.648549:++ Output dataset ./sub-181_ses-1_task-ms_run-1_bold_calc.nii.gz
201112-22:34:02,850 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.edit_func_0.func_drop_trs".
201112-22:34:02,852 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique".
201112-22:34:02,901 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-181_ses-1_task-ms_run-1_bold_calc.nii.gz
201112-22:34:03,151 nipype.interface INFO:
stderr 2020-11-12T22:34:03.151749:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:34:03,152 nipype.interface INFO:
stderr 2020-11-12T22:34:03.152215:++ Authored by: RW Cox
201112-22:34:03,164 nipype.interface INFO:
stderr 2020-11-12T22:34:03.163991:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-181_ses-1_task-ms_run-1_bold_calc.nii.gz
201112-22:34:03,164 nipype.interface INFO:
stderr 2020-11-12T22:34:03.164932: + deoblique
201112-22:34:03,165 nipype.interface INFO:
stderr 2020-11-12T22:34:03.165220: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-181_ses-1_task-ms_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-181_ses-1_task-ms_run-1_bold_calc.nii.gz in NIFTI storage)
201112-22:34:07,343 nipype.interface INFO:
stderr 2020-11-12T22:34:07.343243:++ 3drefit processed 1 datasets
201112-22:34:07,551 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:34:07,553 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_reorient".
201112-22:34:07,561 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-1_task-ms_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_reorient/sub-181_ses-1_task-ms_run-1_bold_calc.nii.gz
201112-22:34:12,520 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:34:12,521 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_RPI".
201112-22:34:12,529 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-ms_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_RPI/sub-181_ses-1_task-ms_run-1_bold_calc_resample.nii.gz
201112-22:34:12,793 nipype.interface INFO:
stderr 2020-11-12T22:34:12.792827:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:34:12,793 nipype.interface INFO:
stderr 2020-11-12T22:34:12.793532:++ Authored by: KR Hammett & RW Cox
201112-22:34:13,318 nipype.interface INFO:
stderr 2020-11-12T22:34:13.318456:++ Output dataset ./sub-181_ses-1_task-ms_run-1_bold_calc_resample_tstat.nii.gz
201112-22:34:13,502 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:34:13,503 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_generate_ref".
201112-22:34:13,511 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-1_task-ms_run-1_bold_calc_resample.1D -1Dmatrix_save sub-181_ses-1_task-ms_run-1_bold_calc_resample.aff12.1D -prefix sub-181_ses-1_task-ms_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_RPI/sub-181_ses-1_task-ms_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-1_task-ms_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_generate_ref/sub-181_ses-1_task-ms_run-1_bold_calc_resample.nii.gz
201112-22:34:13,765 nipype.interface INFO:
stderr 2020-11-12T22:34:13.765500:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:34:13,765 nipype.interface INFO:
stderr 2020-11-12T22:34:13.765964:++ Authored by: RW Cox
201112-22:34:13,776 nipype.interface INFO:
stderr 2020-11-12T22:34:13.776441:++ Coarse del was 10, replaced with 3
201112-22:36:16,610 nipype.interface INFO:
stderr 2020-11-12T22:36:16.610649:++ Max displacement in automask = 0.21 (mm) at sub-brick 56
201112-22:36:16,611 nipype.interface INFO:
stderr 2020-11-12T22:36:16.611485:++ Max delta displ in automask = 0.14 (mm) at sub-brick 64
201112-22:36:20,719 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:36:20,721 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_motion".
201112-22:36:20,728 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-ms_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_motion/sub-181_ses-1_task-ms_run-1_bold_calc_resample_volreg.nii.gz
201112-22:36:21,14 nipype.interface INFO:
stderr 2020-11-12T22:36:21.014471:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:36:21,15 nipype.interface INFO:
stderr 2020-11-12T22:36:21.015057:++ Authored by: KR Hammett & RW Cox
201112-22:36:21,542 nipype.interface INFO:
stderr 2020-11-12T22:36:21.542737:++ Output dataset ./sub-181_ses-1_task-ms_run-1_bold_calc_resample_volreg_tstat.nii.gz
201112-22:36:21,723 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:36:21,724 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_motion_correct_mcflirt".
201112-22:36:21,731 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_reorient/sub-181_ses-1_task-ms_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_motion_correct_mcflirt/sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_motion/sub-181_ses-1_task-ms_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:36:48,852 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:36:48,862 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/calculate_FDJ".
201112-22:36:48,869 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:36:49,103 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:36:49,104 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_frame_wise_displacement_jenkinson".
201112-22:36:49,112 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:36:49,345 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_jenkinson".
201112-22:36:49,347 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_max_displacement".
201112-22:36:49,357 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:36:49,594 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_max_displacement".
201112-22:36:49,596 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_coordinate_transformation".
201112-22:36:49,616 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:36:49,891 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_coordinate_transformation".
201112-22:36:49,903 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_mean_skull".
201112-22:36:49,913 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_mean_skull/sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf.nii.gz
201112-22:36:50,175 nipype.interface INFO:
stderr 2020-11-12T22:36:50.175317:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:36:50,176 nipype.interface INFO:
stderr 2020-11-12T22:36:50.175967:++ Authored by: KR Hammett & RW Cox
201112-22:36:50,748 nipype.interface INFO:
stderr 2020-11-12T22:36:50.748653:++ Output dataset ./sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat.nii.gz
201112-22:36:50,934 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:36:50,935 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass".
201112-22:36:50,941 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_mean_skull/sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:36:52,842 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:36:52,843 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_dilate".
201112-22:36:52,849 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_dilate/sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:36:53,527 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:36:53,529 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_mask".
201112-22:36:53,535 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_dilate/sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_mask/sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:36:53,980 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:36:53,981 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/unifize".
201112-22:36:53,987 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/unifize/sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:36:54,242 nipype.interface INFO:
stderr 2020-11-12T22:36:54.242178:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:38:14,379 nipype.interface INFO:
stderr 2020-11-12T22:38:14.379337: + Pre-processing: IAV..UW[s4851]Im
201112-22:38:14,396 nipype.interface INFO:
stderr 2020-11-12T22:38:14.396488:++ Output dataset ./uni.nii.gz
201112-22:38:14,397 nipype.interface INFO:
stderr 2020-11-12T22:38:14.396933:++ ===== Elapsed = 80.2 sec
201112-22:38:14,601 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:38:14,603 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass".
201112-22:38:14,611 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:38:14,860 nipype.interface INFO:
stderr 2020-11-12T22:38:14.860711:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:38:14,861 nipype.interface INFO:
stderr 2020-11-12T22:38:14.861570:++ Authored by: Emperor Zhark
201112-22:38:14,864 nipype.interface INFO:
stderr 2020-11-12T22:38:14.864089:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:38:14,869 nipype.interface INFO:
stderr 2020-11-12T22:38:14.869354:++ Forming automask
201112-22:38:14,871 nipype.interface INFO:
stderr 2020-11-12T22:38:14.871093: + Fixed clip level = 417.361755
201112-22:38:14,875 nipype.interface INFO:
stderr 2020-11-12T22:38:14.875406: + Used gradual clip level = 345.353485 .. 465.769836
201112-22:38:14,875 nipype.interface INFO:
stderr 2020-11-12T22:38:14.875656: + Number voxels above clip level = 33993
201112-22:38:14,875 nipype.interface INFO:
stderr 2020-11-12T22:38:14.875844: + Clustering voxels ...
201112-22:38:14,877 nipype.interface INFO:
stderr 2020-11-12T22:38:14.877618: + Largest cluster has 33984 voxels
201112-22:38:14,879 nipype.interface INFO:
stderr 2020-11-12T22:38:14.879293: + Clustering voxels ...
201112-22:38:14,880 nipype.interface INFO:
stderr 2020-11-12T22:38:14.880568: + Largest cluster has 33304 voxels
201112-22:38:14,883 nipype.interface INFO:
stderr 2020-11-12T22:38:14.883967: + Filled 1098 voxels in small holes; now have 34402 voxels
201112-22:38:14,886 nipype.interface INFO:
stderr 2020-11-12T22:38:14.886179: + Filled 9 voxels in large holes; now have 34411 voxels
201112-22:38:14,887 nipype.interface INFO:
stderr 2020-11-12T22:38:14.887493: + Clustering voxels ...
201112-22:38:14,888 nipype.interface INFO:
stderr 2020-11-12T22:38:14.888652: + Largest cluster has 34405 voxels
201112-22:38:14,888 nipype.interface INFO:
stderr 2020-11-12T22:38:14.888880: + Clustering non-brain voxels ...
201112-22:38:14,889 nipype.interface INFO:
stderr 2020-11-12T22:38:14.889048: + Clustering voxels ...
201112-22:38:14,891 nipype.interface INFO:
stderr 2020-11-12T22:38:14.891821: + Largest cluster has 104671 voxels
201112-22:38:14,892 nipype.interface INFO:
stderr 2020-11-12T22:38:14.892156: + Mask now has 34593 voxels
201112-22:38:14,892 nipype.interface INFO:
stderr 2020-11-12T22:38:14.892308:++ Dilating automask
201112-22:38:14,900 nipype.interface INFO:
stderr 2020-11-12T22:38:14.900662: + Clustering voxels ...
201112-22:38:14,903 nipype.interface INFO:
stderr 2020-11-12T22:38:14.902983: + Largest cluster has 98082 voxels
201112-22:38:14,903 nipype.interface INFO:
stderr 2020-11-12T22:38:14.903317:++ 41182 voxels in the mask [out of 139264: 29.57%]
201112-22:38:14,903 nipype.interface INFO:
stderr 2020-11-12T22:38:14.903487:++ first 9 x-planes are zero [from R]
201112-22:38:14,903 nipype.interface INFO:
stderr 2020-11-12T22:38:14.903646:++ last 8 x-planes are zero [from L]
201112-22:38:14,903 nipype.interface INFO:
stderr 2020-11-12T22:38:14.903779:++ first 0 y-planes are zero [from P]
201112-22:38:14,903 nipype.interface INFO:
stderr 2020-11-12T22:38:14.903924:++ last 8 y-planes are zero [from A]
201112-22:38:14,904 nipype.interface INFO:
stderr 2020-11-12T22:38:14.904087:++ first 1 z-planes are zero [from I]
201112-22:38:14,904 nipype.interface INFO:
stderr 2020-11-12T22:38:14.904230:++ last 0 z-planes are zero [from S]
201112-22:38:14,909 nipype.interface INFO:
stderr 2020-11-12T22:38:14.909609:++ Output dataset ./uni_mask.nii.gz
201112-22:38:14,909 nipype.interface INFO:
stderr 2020-11-12T22:38:14.909843:++ applying mask to original data
201112-22:38:14,911 nipype.interface INFO:
stderr 2020-11-12T22:38:14.910989:++ Writing masked data
201112-22:38:14,926 nipype.interface INFO:
stderr 2020-11-12T22:38:14.926805:++ Output dataset ./uni_masked.nii.gz
201112-22:38:14,927 nipype.interface INFO:
stderr 2020-11-12T22:38:14.927342:++ CPU time = 0.000000 sec
201112-22:38:15,92 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:38:15,94 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks".
201112-22:38:15,100 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:38:15,521 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:38:15,523 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/cal_DVARS".
201112-22:38:15,530 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-22:38:16,309 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-22:38:16,311 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_extract_brain".
201112-22:38:16,319 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_motion_correct_mcflirt/sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:38:16,568 nipype.interface INFO:
stderr 2020-11-12T22:38:16.568735:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:38:16,569 nipype.interface INFO:
stderr 2020-11-12T22:38:16.569214:++ Authored by: A cast of thousands
201112-22:38:19,792 nipype.interface INFO:
stderr 2020-11-12T22:38:19.792322:++ Output dataset ./sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:38:20,2 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:38:20,4 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize".
201112-22:38:20,11 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_extract_brain/sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize/sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-22:38:22,531 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:38:22,532 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mask_normalize".
201112-22:38:22,540 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize/sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mask_normalize/sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:38:23,699 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:38:23,701 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean".
201112-22:38:23,706 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean/sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:38:23,950 nipype.interface INFO:
stderr 2020-11-12T22:38:23.950733:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:38:23,951 nipype.interface INFO:
stderr 2020-11-12T22:38:23.951239:++ Authored by: KR Hammett & RW Cox
201112-22:38:24,291 nipype.interface INFO:
stderr 2020-11-12T22:38:24.291879:++ Output dataset ./sub-181_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-22:38:24,492 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:38:24,494 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/norm_motion_params".
201112-22:38:24,501 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:38:24,738 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:38:24,740 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_motion_0/_scan_ms_run-1/motion_plot".
201112-22:38:24,745 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-22:38:25,226 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_motion_0.motion_plot".
201112-22:38:25,228 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_qc___movement_trans_plot".
201112-22:38:25,237 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:38:25,450 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___movement_trans_plot/_scan_ms_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/movement_trans_plot/_scan_ms_run-1/motion_trans_plot.png
201112-22:38:25,473 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_trans_plot".
201112-22:38:25,474 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_qc___movement_rot_plot".
201112-22:38:25,483 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:38:25,694 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___movement_rot_plot/_scan_ms_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/movement_rot_plot/_scan_ms_run-1/motion_rot_plot.png
201112-22:38:25,718 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_rot_plot".
201112-22:38:25,720 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/calc_motion_parameters".
201112-22:38:25,728 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:38:25,967 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-22:38:25,969 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_motion_params".
201112-22:38:25,976 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:38:26,211 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_params".
201112-22:38:26,212 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/calculate_FD".
201112-22:38:26,216 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-22:38:26,453 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-22:38:26,454 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_frame_wise_displacement_power".
201112-22:38:26,462 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:38:26,696 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_power".
201112-22:38:26,698 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/calc_power_parameters".
201112-22:38:26,704 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:38:26,943 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-22:38:26,945 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_power_params".
201112-22:38:26,951 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:38:27,185 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_power_params".
201112-22:38:27,186 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_movement_parameters".
201112-22:38:27,193 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:38:27,422 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_movement_parameters".
201112-22:38:27,423 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/func_despiked_0".
201112-22:38:27,428 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-181_ses-1_task-ms_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/func_despiked_0/sub-181_ses-1_task-ms_run-1_bold_calc.nii.gz
201112-22:38:27,681 nipype.interface INFO:
stderr 2020-11-12T22:38:27.681469:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:38:27,682 nipype.interface INFO:
stderr 2020-11-12T22:38:27.682057:++ Authored by: RW Cox
201112-22:38:27,685 nipype.interface INFO:
stderr 2020-11-12T22:38:27.685518:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:38:27,685 nipype.interface INFO:
stderr 2020-11-12T22:38:27.685518: such as /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/func_despiked_0/sub-181_ses-1_task-ms_run-1_bold_calc.nii.gz,
201112-22:38:27,685 nipype.interface INFO:
stderr 2020-11-12T22:38:27.685518: or viewing/combining it with volumes of differing obliquity,
201112-22:38:27,686 nipype.interface INFO:
stderr 2020-11-12T22:38:27.685518: you should consider running:
201112-22:38:27,686 nipype.interface INFO:
stderr 2020-11-12T22:38:27.685518: 3dWarp -deoblique
201112-22:38:27,686 nipype.interface INFO:
stderr 2020-11-12T22:38:27.685518: on this and other oblique datasets in the same session.
201112-22:38:27,686 nipype.interface INFO:
stderr 2020-11-12T22:38:27.685518: See 3dWarp -help for details.
201112-22:38:27,686 nipype.interface INFO:
stderr 2020-11-12T22:38:27.686584:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/func_despiked_0/sub-181_ses-1_task-ms_run-1_bold_calc.nii.gz is 28.005903 degrees from plumb.
201112-22:38:27,686 nipype.interface INFO:
stderr 2020-11-12T22:38:27.686813:++ Input dataset is in short format, but output will be in float format
201112-22:38:27,687 nipype.interface INFO:
stderr 2020-11-12T22:38:27.687244:++ ignoring first 0 time points, using last 143
201112-22:38:27,687 nipype.interface INFO:
stderr 2020-11-12T22:38:27.687422:++ using 143 time points => -corder 5
201112-22:38:27,687 nipype.interface INFO:
stderr 2020-11-12T22:38:27.687590:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/func_despiked_0/sub-181_ses-1_task-ms_run-1_bold_calc.nii.gz
201112-22:38:28,220 nipype.interface INFO:
stderr 2020-11-12T22:38:28.220314:++ 39115 voxels in the automask [out of 139264 in dataset]
201112-22:38:28,225 nipype.interface INFO:
stderr 2020-11-12T22:38:28.225698:++ 64907 voxels in the dilated automask [out of 139264 in dataset]
201112-22:38:28,238 nipype.interface INFO:
stderr 2020-11-12T22:38:28.238860:++ Procesing time series with OLD model fit algorithm
201112-22:38:28,239 nipype.interface INFO:
stderr 2020-11-12T22:38:28.239205:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-22:38:28,239 nipype.interface INFO:
stderr 2020-11-12T22:38:28.239369: + [ 3.457% .. 0.072% of normal distribution]
201112-22:38:28,239 nipype.interface INFO:
stderr 2020-11-12T22:38:28.239520: + [ 8.839% .. 3.125% of Laplace distribution]
201112-22:38:28,239 nipype.interface INFO:
stderr 2020-11-12T22:38:28.239684:++ start OpenMP thread #0
201112-22:38:36,210 nipype.interface INFO:
stderr 2020-11-12T22:38:36.210176:...........................
201112-22:38:36,210 nipype.interface INFO:
stderr 2020-11-12T22:38:36.210748:++ Elapsed despike time = 7s 971ms
201112-22:38:36,210 nipype.interface INFO:
stderr 2020-11-12T22:38:36.210902:
201112-22:38:36,211 nipype.interface INFO:
stderr 2020-11-12T22:38:36.211877:++ FINAL: 9281701 data points, 592602 edits [6.385%], 55140 big edits [0.594%]
201112-22:38:41,383 nipype.interface INFO:
stderr 2020-11-12T22:38:41.383627:++ Output dataset ./sub-181_ses-1_task-ms_run-1_bold_calc_despike.nii.gz
201112-22:38:41,610 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_despiked_0".
201112-22:38:41,612 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_ms_run-1/slice_timing".
201112-22:38:41,622 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:38:41,622 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_ms_run-1/slice_timing/sub-181_ses-1_task-ms_run-1_bold_calc_despike.nii.gz
201112-22:38:41,834 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:38:41,885 nipype.interface INFO:
stderr 2020-11-12T22:38:41.885680:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:38:41,890 nipype.interface INFO:
stderr 2020-11-12T22:38:41.890496:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:38:41,890 nipype.interface INFO:
stderr 2020-11-12T22:38:41.890496: such as /outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_ms_run-1/slice_timing/sub-181_ses-1_task-ms_run-1_bold_calc_despike.nii.gz,
201112-22:38:41,891 nipype.interface INFO:
stderr 2020-11-12T22:38:41.890496: or viewing/combining it with volumes of differing obliquity,
201112-22:38:41,891 nipype.interface INFO:
stderr 2020-11-12T22:38:41.890496: you should consider running:
201112-22:38:41,891 nipype.interface INFO:
stderr 2020-11-12T22:38:41.890496: 3dWarp -deoblique
201112-22:38:41,891 nipype.interface INFO:
stderr 2020-11-12T22:38:41.890496: on this and other oblique datasets in the same session.
201112-22:38:41,891 nipype.interface INFO:
stderr 2020-11-12T22:38:41.890496: See 3dWarp -help for details.
201112-22:38:41,891 nipype.interface INFO:
stderr 2020-11-12T22:38:41.891840:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_ms_run-1/slice_timing/sub-181_ses-1_task-ms_run-1_bold_calc_despike.nii.gz is 28.005903 degrees from plumb.
201112-22:38:46,781 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_slice_timing_correction_0.slice_timing".
201112-22:38:46,783 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique".
201112-22:38:46,849 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift.nii.gz
201112-22:38:47,103 nipype.interface INFO:
stderr 2020-11-12T22:38:47.103821:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:38:47,104 nipype.interface INFO:
stderr 2020-11-12T22:38:47.104333:++ Authored by: RW Cox
201112-22:38:47,115 nipype.interface INFO:
stderr 2020-11-12T22:38:47.115673:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift.nii.gz
201112-22:38:47,116 nipype.interface INFO:
stderr 2020-11-12T22:38:47.116776: + deoblique
201112-22:38:47,117 nipype.interface INFO:
stderr 2020-11-12T22:38:47.117279: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-22:38:49,740 nipype.interface INFO:
stderr 2020-11-12T22:38:49.739904:++ 3drefit processed 1 datasets
201112-22:38:49,942 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:38:49,944 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_reorient".
201112-22:38:49,953 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_reorient/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift.nii.gz
201112-22:38:53,247 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:38:53,248 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_RPI".
201112-22:38:53,256 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_RPI/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-22:38:53,512 nipype.interface INFO:
stderr 2020-11-12T22:38:53.512740:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:38:53,513 nipype.interface INFO:
stderr 2020-11-12T22:38:53.513525:++ Authored by: KR Hammett & RW Cox
201112-22:38:54,192 nipype.interface INFO:
stderr 2020-11-12T22:38:54.192335:++ Output dataset ./sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-22:38:54,371 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:38:54,373 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_generate_ref".
201112-22:38:54,380 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_RPI/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_generate_ref/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-22:38:54,633 nipype.interface INFO:
stderr 2020-11-12T22:38:54.633604:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:38:54,634 nipype.interface INFO:
stderr 2020-11-12T22:38:54.634364:++ Authored by: RW Cox
201112-22:38:54,645 nipype.interface INFO:
stderr 2020-11-12T22:38:54.645019:++ Coarse del was 10, replaced with 3
201112-22:40:57,284 nipype.interface INFO:
stderr 2020-11-12T22:40:57.284299:++ Max displacement in automask = 0.22 (mm) at sub-brick 56
201112-22:40:57,284 nipype.interface INFO:
stderr 2020-11-12T22:40:57.284890:++ Max delta displ in automask = 0.12 (mm) at sub-brick 68
201112-22:41:02,627 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:41:02,629 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_motion".
201112-22:41:02,636 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_motion/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-22:41:02,901 nipype.interface INFO:
stderr 2020-11-12T22:41:02.901406:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:41:02,902 nipype.interface INFO:
stderr 2020-11-12T22:41:02.902216:++ Authored by: KR Hammett & RW Cox
201112-22:41:03,797 nipype.interface INFO:
stderr 2020-11-12T22:41:03.797779:++ Output dataset ./sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-22:41:04,26 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:41:04,28 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_motion_correct_mcflirt".
201112-22:41:04,35 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_reorient/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_motion_correct_mcflirt/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_motion/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:41:29,861 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:41:29,871 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_motion_correct".
201112-22:41:29,880 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:41:30,114 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_correct".
201112-22:41:30,115 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_mean_skull".
201112-22:41:30,124 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_mean_skull/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-22:41:30,380 nipype.interface INFO:
stderr 2020-11-12T22:41:30.380814:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:41:30,381 nipype.interface INFO:
stderr 2020-11-12T22:41:30.381673:++ Authored by: KR Hammett & RW Cox
201112-22:41:31,103 nipype.interface INFO:
stderr 2020-11-12T22:41:31.103324:++ Output dataset ./sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-22:41:31,284 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:41:31,285 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass".
201112-22:41:31,291 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_mean_skull/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:41:33,190 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:41:33,192 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_dilate".
201112-22:41:33,197 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_dilate/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:41:33,885 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:41:33,887 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_mask".
201112-22:41:33,894 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_dilate/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_mask/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:41:34,362 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:41:34,365 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/unifize".
201112-22:41:34,372 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/unifize/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:41:34,641 nipype.interface INFO:
stderr 2020-11-12T22:41:34.641505:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:42:54,962 nipype.interface INFO:
stderr 2020-11-12T22:42:54.962563: + Pre-processing: IAV..UW[s4886]Im
201112-22:42:54,982 nipype.interface INFO:
stderr 2020-11-12T22:42:54.982886:++ Output dataset ./uni.nii.gz
201112-22:42:54,983 nipype.interface INFO:
stderr 2020-11-12T22:42:54.983386:++ ===== Elapsed = 80.3 sec
201112-22:42:55,196 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:42:55,198 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass".
201112-22:42:55,206 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:42:55,466 nipype.interface INFO:
stderr 2020-11-12T22:42:55.466387:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:42:55,466 nipype.interface INFO:
stderr 2020-11-12T22:42:55.466881:++ Authored by: Emperor Zhark
201112-22:42:55,470 nipype.interface INFO:
stderr 2020-11-12T22:42:55.470267:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:42:55,477 nipype.interface INFO:
stderr 2020-11-12T22:42:55.477407:++ Forming automask
201112-22:42:55,479 nipype.interface INFO:
stderr 2020-11-12T22:42:55.479158: + Fixed clip level = 417.738953
201112-22:42:55,482 nipype.interface INFO:
stderr 2020-11-12T22:42:55.482519: + Used gradual clip level = 346.040833 .. 466.037659
201112-22:42:55,482 nipype.interface INFO:
stderr 2020-11-12T22:42:55.482727: + Number voxels above clip level = 34016
201112-22:42:55,482 nipype.interface INFO:
stderr 2020-11-12T22:42:55.482882: + Clustering voxels ...
201112-22:42:55,484 nipype.interface INFO:
stderr 2020-11-12T22:42:55.484136: + Largest cluster has 34007 voxels
201112-22:42:55,485 nipype.interface INFO:
stderr 2020-11-12T22:42:55.485581: + Clustering voxels ...
201112-22:42:55,486 nipype.interface INFO:
stderr 2020-11-12T22:42:55.486766: + Largest cluster has 33331 voxels
201112-22:42:55,490 nipype.interface INFO:
stderr 2020-11-12T22:42:55.490186: + Filled 1095 voxels in small holes; now have 34426 voxels
201112-22:42:55,493 nipype.interface INFO:
stderr 2020-11-12T22:42:55.493432: + Filled 10 voxels in large holes; now have 34436 voxels
201112-22:42:55,494 nipype.interface INFO:
stderr 2020-11-12T22:42:55.494760: + Clustering voxels ...
201112-22:42:55,495 nipype.interface INFO:
stderr 2020-11-12T22:42:55.495921: + Largest cluster has 34430 voxels
201112-22:42:55,496 nipype.interface INFO:
stderr 2020-11-12T22:42:55.496184: + Clustering non-brain voxels ...
201112-22:42:55,496 nipype.interface INFO:
stderr 2020-11-12T22:42:55.496349: + Clustering voxels ...
201112-22:42:55,499 nipype.interface INFO:
stderr 2020-11-12T22:42:55.499222: + Largest cluster has 104646 voxels
201112-22:42:55,499 nipype.interface INFO:
stderr 2020-11-12T22:42:55.499554: + Mask now has 34618 voxels
201112-22:42:55,499 nipype.interface INFO:
stderr 2020-11-12T22:42:55.499715:++ Dilating automask
201112-22:42:55,507 nipype.interface INFO:
stderr 2020-11-12T22:42:55.507531: + Clustering voxels ...
201112-22:42:55,510 nipype.interface INFO:
stderr 2020-11-12T22:42:55.509998: + Largest cluster has 98036 voxels
201112-22:42:55,510 nipype.interface INFO:
stderr 2020-11-12T22:42:55.510343:++ 41228 voxels in the mask [out of 139264: 29.60%]
201112-22:42:55,510 nipype.interface INFO:
stderr 2020-11-12T22:42:55.510514:++ first 9 x-planes are zero [from R]
201112-22:42:55,510 nipype.interface INFO:
stderr 2020-11-12T22:42:55.510674:++ last 8 x-planes are zero [from L]
201112-22:42:55,510 nipype.interface INFO:
stderr 2020-11-12T22:42:55.510814:++ first 0 y-planes are zero [from P]
201112-22:42:55,510 nipype.interface INFO:
stderr 2020-11-12T22:42:55.510974:++ last 8 y-planes are zero [from A]
201112-22:42:55,511 nipype.interface INFO:
stderr 2020-11-12T22:42:55.511112:++ first 1 z-planes are zero [from I]
201112-22:42:55,511 nipype.interface INFO:
stderr 2020-11-12T22:42:55.511244:++ last 0 z-planes are zero [from S]
201112-22:42:55,515 nipype.interface INFO:
stderr 2020-11-12T22:42:55.515805:++ Output dataset ./uni_mask.nii.gz
201112-22:42:55,516 nipype.interface INFO:
stderr 2020-11-12T22:42:55.516026:++ applying mask to original data
201112-22:42:55,516 nipype.interface INFO:
stderr 2020-11-12T22:42:55.516836:++ Writing masked data
201112-22:42:55,534 nipype.interface INFO:
stderr 2020-11-12T22:42:55.534336:++ Output dataset ./uni_masked.nii.gz
201112-22:42:55,534 nipype.interface INFO:
stderr 2020-11-12T22:42:55.534917:++ CPU time = 0.000000 sec
201112-22:42:55,712 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:42:55,714 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks".
201112-22:42:55,721 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:42:56,141 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:42:56,142 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-22:42:56,147 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-22:42:56,378 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-22:42:56,380 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-22:42:56,385 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:42:56,639 nipype.interface INFO:
stderr 2020-11-12T22:42:56.639503:++ no -frac option: defaulting to -union
201112-22:42:56,639 nipype.interface INFO:
stderr 2020-11-12T22:42:56.639881:++ processing 1 input dataset(s), NN=2...
201112-22:42:56,640 nipype.interface INFO:
stderr 2020-11-12T22:42:56.640495:++ padding all datasets by 0 (for dilations)
201112-22:42:56,648 nipype.interface INFO:
stderr 2020-11-12T22:42:56.648282:++ frac 0 over 1 volumes gives min count 0
201112-22:42:56,648 nipype.interface INFO:
stderr 2020-11-12T22:42:56.648684:++ voxel limits: 0 clipped, 41141 survived, 98123 were zero
201112-22:42:56,648 nipype.interface INFO:
stderr 2020-11-12T22:42:56.648850:++ writing result sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-22:42:56,653 nipype.interface INFO:
stderr 2020-11-12T22:42:56.653146:++ Output dataset ./sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-22:42:56,826 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-22:42:56,828 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_functional_brain_mask".
201112-22:42:56,835 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:42:57,72 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask".
201112-22:42:57,74 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/functional_brain_mask_derivative_0".
201112-22:42:57,79 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-22:42:57,291 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-22:42:57,297 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:42:57,819 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201112-22:42:57,838 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.functional_brain_mask_derivative_0".
201112-22:42:57,840 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_extract_brain".
201112-22:42:57,851 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_motion_correct_mcflirt/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:42:58,104 nipype.interface INFO:
stderr 2020-11-12T22:42:58.104143:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:42:58,104 nipype.interface INFO:
stderr 2020-11-12T22:42:58.104644:++ Authored by: A cast of thousands
201112-22:43:01,717 nipype.interface INFO:
stderr 2020-11-12T22:43:01.717437:++ Output dataset ./sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:43:01,922 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:43:01,924 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize".
201112-22:43:01,930 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_extract_brain/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-22:43:04,575 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:43:04,576 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-22:43:04,584 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:43:05,576 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_mean".
201112-22:43:05,578 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-22:43:05,585 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:43:05,839 nipype.interface INFO:
stderr 2020-11-12T22:43:05.839178:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:43:05,839 nipype.interface INFO:
stderr 2020-11-12T22:43:05.839705:++ Authored by: KR Hammett & RW Cox
201112-22:43:06,483 nipype.interface INFO:
stderr 2020-11-12T22:43:06.483327:++ Output dataset ./sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:43:06,690 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.functional_mean".
201112-22:43:06,691 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_ms_run-1/std_dev".
201112-22:43:06,698 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_ms_run-1/std_dev/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:43:06,951 nipype.interface INFO:
stderr 2020-11-12T22:43:06.951050:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:43:06,951 nipype.interface INFO:
stderr 2020-11-12T22:43:06.951566:++ Authored by: KR Hammett & RW Cox
201112-22:43:07,549 nipype.interface INFO:
stderr 2020-11-12T22:43:07.549389:++ Output dataset ./sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:43:07,755 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev".
201112-22:43:07,757 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_functional_preprocessed".
201112-22:43:07,765 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:43:08,2 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed".
201112-22:43:08,4 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mask_normalize".
201112-22:43:08,11 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mask_normalize/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:43:09,206 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:43:09,208 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_functional_preprocessed_mask".
201112-22:43:09,216 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:43:09,455 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed_mask".
201112-22:43:09,457 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean".
201112-22:43:09,464 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:43:09,738 nipype.interface INFO:
stderr 2020-11-12T22:43:09.738333:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:43:09,738 nipype.interface INFO:
stderr 2020-11-12T22:43:09.738862:++ Authored by: KR Hammett & RW Cox
201112-22:43:10,369 nipype.interface INFO:
stderr 2020-11-12T22:43:10.369365:++ Output dataset ./sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-22:43:10,583 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:43:10,585 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_mean_functional".
201112-22:43:10,593 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:43:10,832 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional".
201112-22:43:10,834 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/norm_motion_params".
201112-22:43:10,841 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:43:11,77 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:43:11,79 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_slice_time_corrected".
201112-22:43:11,87 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:43:11,321 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_slice_time_corrected".
201112-22:43:11,323 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_raw_functional".
201112-22:43:11,333 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:43:11,913 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_raw_functional".
201112-22:43:11,915 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_ms_run-1/check_func_scan".
201112-22:43:11,949 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:43:12,193 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.check_func_scan".
201112-22:43:12,204 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_matching_run-3/select_scan_params".
201112-22:43:12,239 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:43:12,485 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.select_scan_params".
201112-22:43:12,497 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_matching_run-3/s3_scan_params".
201112-22:43:12,506 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:43:12,749 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.s3_scan_params".
201112-22:43:12,753 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.scan_params_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/scan_params_0".
201112-22:43:12,762 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:43:13,1 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.scan_params_0".
201112-22:43:13,3 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_matching_run-3/selectrest".
201112-22:43:13,37 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:43:13,280 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.selectrest".
201112-22:43:13,290 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_matching_run-3/check_for_s3".
201112-22:43:13,295 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:43:13,627 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.check_for_s3".
201112-22:43:13,629 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-181_ses-1/edit_func_0/_scan_matching_run-3/func_get_idx".
201112-22:43:13,635 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:43:13,873 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.edit_func_0.func_get_idx".
201112-22:43:13,875 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-181_ses-1/edit_func_0/_scan_matching_run-3/func_drop_trs".
201112-22:43:13,882 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-181/ses-1/func/sub-181_ses-1_task-matching_run-3_bold.nii.gz[0..98] -expr "a" -prefix sub-181_ses-1_task-matching_run-3_bold_calc.nii.gz
201112-22:43:14,144 nipype.interface INFO:
stderr 2020-11-12T22:43:14.144210:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:43:14,144 nipype.interface INFO:
stderr 2020-11-12T22:43:14.144811:++ Authored by: A cast of thousands
201112-22:43:18,540 nipype.interface INFO:
stderr 2020-11-12T22:43:18.539982:++ Output dataset ./sub-181_ses-1_task-matching_run-3_bold_calc.nii.gz
201112-22:43:18,749 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.edit_func_0.func_drop_trs".
201112-22:43:18,750 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique".
201112-22:43:18,788 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-181_ses-1_task-matching_run-3_bold_calc.nii.gz
201112-22:43:19,38 nipype.interface INFO:
stderr 2020-11-12T22:43:19.038173:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:43:19,38 nipype.interface INFO:
stderr 2020-11-12T22:43:19.038622:++ Authored by: RW Cox
201112-22:43:19,49 nipype.interface INFO:
stderr 2020-11-12T22:43:19.049755:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-181_ses-1_task-matching_run-3_bold_calc.nii.gz
201112-22:43:19,51 nipype.interface INFO:
stderr 2020-11-12T22:43:19.051103: + deoblique
201112-22:43:19,51 nipype.interface INFO:
stderr 2020-11-12T22:43:19.051401: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-181_ses-1_task-matching_run-3_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-181_ses-1_task-matching_run-3_bold_calc.nii.gz in NIFTI storage)
201112-22:43:22,109 nipype.interface INFO:
stderr 2020-11-12T22:43:22.109211:++ 3drefit processed 1 datasets
201112-22:43:22,313 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:43:22,314 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_reorient".
201112-22:43:22,321 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-1_task-matching_run-3_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_reorient/sub-181_ses-1_task-matching_run-3_bold_calc.nii.gz
201112-22:43:25,819 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:43:25,821 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_RPI".
201112-22:43:25,826 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-3_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_RPI/sub-181_ses-1_task-matching_run-3_bold_calc_resample.nii.gz
201112-22:43:26,82 nipype.interface INFO:
stderr 2020-11-12T22:43:26.082649:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:43:26,83 nipype.interface INFO:
stderr 2020-11-12T22:43:26.083229:++ Authored by: KR Hammett & RW Cox
201112-22:43:26,462 nipype.interface INFO:
stderr 2020-11-12T22:43:26.462831:++ Output dataset ./sub-181_ses-1_task-matching_run-3_bold_calc_resample_tstat.nii.gz
201112-22:43:26,638 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:43:26,640 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_generate_ref".
201112-22:43:26,646 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-1_task-matching_run-3_bold_calc_resample.1D -1Dmatrix_save sub-181_ses-1_task-matching_run-3_bold_calc_resample.aff12.1D -prefix sub-181_ses-1_task-matching_run-3_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_RPI/sub-181_ses-1_task-matching_run-3_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-1_task-matching_run-3_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_generate_ref/sub-181_ses-1_task-matching_run-3_bold_calc_resample.nii.gz
201112-22:43:26,898 nipype.interface INFO:
stderr 2020-11-12T22:43:26.898609:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:43:26,899 nipype.interface INFO:
stderr 2020-11-12T22:43:26.899251:++ Authored by: RW Cox
201112-22:43:26,912 nipype.interface INFO:
stderr 2020-11-12T22:43:26.912522:++ Coarse del was 10, replaced with 3
201112-22:44:50,674 nipype.interface INFO:
stderr 2020-11-12T22:44:50.674165:++ Max displacement in automask = 0.33 (mm) at sub-brick 0
201112-22:44:50,674 nipype.interface INFO:
stderr 2020-11-12T22:44:50.674814:++ Max delta displ in automask = 0.21 (mm) at sub-brick 35
201112-22:44:53,625 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:44:53,627 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_motion".
201112-22:44:53,635 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-3_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_motion/sub-181_ses-1_task-matching_run-3_bold_calc_resample_volreg.nii.gz
201112-22:44:53,898 nipype.interface INFO:
stderr 2020-11-12T22:44:53.897902:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:44:53,898 nipype.interface INFO:
stderr 2020-11-12T22:44:53.898842:++ Authored by: KR Hammett & RW Cox
201112-22:44:54,283 nipype.interface INFO:
stderr 2020-11-12T22:44:54.283497:++ Output dataset ./sub-181_ses-1_task-matching_run-3_bold_calc_resample_volreg_tstat.nii.gz
201112-22:44:54,468 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:44:54,469 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_motion_correct_mcflirt".
201112-22:44:54,477 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_reorient/sub-181_ses-1_task-matching_run-3_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_motion_correct_mcflirt/sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_motion/sub-181_ses-1_task-matching_run-3_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:45:13,459 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:45:13,466 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/calculate_FDJ".
201112-22:45:13,473 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:45:13,707 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:45:13,709 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_frame_wise_displacement_jenkinson".
201112-22:45:13,716 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:45:13,950 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_jenkinson".
201112-22:45:13,952 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_max_displacement".
201112-22:45:13,960 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:45:14,193 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_max_displacement".
201112-22:45:14,195 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_coordinate_transformation".
201112-22:45:14,213 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:45:14,473 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_coordinate_transformation".
201112-22:45:14,482 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_mean_skull".
201112-22:45:14,490 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_mean_skull/sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf.nii.gz
201112-22:45:14,759 nipype.interface INFO:
stderr 2020-11-12T22:45:14.759492:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:45:14,760 nipype.interface INFO:
stderr 2020-11-12T22:45:14.760416:++ Authored by: KR Hammett & RW Cox
201112-22:45:15,183 nipype.interface INFO:
stderr 2020-11-12T22:45:15.183658:++ Output dataset ./sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat.nii.gz
201112-22:45:15,363 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:45:15,364 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass".
201112-22:45:15,370 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_mean_skull/sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:45:17,249 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:45:17,251 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_dilate".
201112-22:45:17,257 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_dilate/sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:45:17,971 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:45:17,973 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_mask".
201112-22:45:17,979 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_dilate/sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_mask/sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:45:18,432 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:45:18,434 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/unifize".
201112-22:45:18,440 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/unifize/sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:45:18,703 nipype.interface INFO:
stderr 2020-11-12T22:45:18.703731:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:46:39,190 nipype.interface INFO:
stderr 2020-11-12T22:46:39.190510: + Pre-processing: IAV..UW[s4933]Im
201112-22:46:39,208 nipype.interface INFO:
stderr 2020-11-12T22:46:39.208615:++ Output dataset ./uni.nii.gz
201112-22:46:39,209 nipype.interface INFO:
stderr 2020-11-12T22:46:39.209045:++ ===== Elapsed = 80.5 sec
201112-22:46:39,421 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:46:39,423 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass".
201112-22:46:39,431 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:46:39,694 nipype.interface INFO:
stderr 2020-11-12T22:46:39.694290:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:46:39,694 nipype.interface INFO:
stderr 2020-11-12T22:46:39.694811:++ Authored by: Emperor Zhark
201112-22:46:39,698 nipype.interface INFO:
stderr 2020-11-12T22:46:39.697982:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:46:39,702 nipype.interface INFO:
stderr 2020-11-12T22:46:39.702699:++ Forming automask
201112-22:46:39,704 nipype.interface INFO:
stderr 2020-11-12T22:46:39.704683: + Fixed clip level = 418.595337
201112-22:46:39,709 nipype.interface INFO:
stderr 2020-11-12T22:46:39.709017: + Used gradual clip level = 345.879852 .. 467.638947
201112-22:46:39,709 nipype.interface INFO:
stderr 2020-11-12T22:46:39.709299: + Number voxels above clip level = 34001
201112-22:46:39,709 nipype.interface INFO:
stderr 2020-11-12T22:46:39.709454: + Clustering voxels ...
201112-22:46:39,710 nipype.interface INFO:
stderr 2020-11-12T22:46:39.710654: + Largest cluster has 33995 voxels
201112-22:46:39,712 nipype.interface INFO:
stderr 2020-11-12T22:46:39.712103: + Clustering voxels ...
201112-22:46:39,713 nipype.interface INFO:
stderr 2020-11-12T22:46:39.713297: + Largest cluster has 33382 voxels
201112-22:46:39,717 nipype.interface INFO:
stderr 2020-11-12T22:46:39.716990: + Filled 1062 voxels in small holes; now have 34444 voxels
201112-22:46:39,720 nipype.interface INFO:
stderr 2020-11-12T22:46:39.720543: + Filled 13 voxels in large holes; now have 34457 voxels
201112-22:46:39,721 nipype.interface INFO:
stderr 2020-11-12T22:46:39.721921: + Clustering voxels ...
201112-22:46:39,723 nipype.interface INFO:
stderr 2020-11-12T22:46:39.723153: + Largest cluster has 34452 voxels
201112-22:46:39,723 nipype.interface INFO:
stderr 2020-11-12T22:46:39.723383: + Clustering non-brain voxels ...
201112-22:46:39,723 nipype.interface INFO:
stderr 2020-11-12T22:46:39.723533: + Clustering voxels ...
201112-22:46:39,726 nipype.interface INFO:
stderr 2020-11-12T22:46:39.726421: + Largest cluster has 104624 voxels
201112-22:46:39,726 nipype.interface INFO:
stderr 2020-11-12T22:46:39.726755: + Mask now has 34640 voxels
201112-22:46:39,726 nipype.interface INFO:
stderr 2020-11-12T22:46:39.726916:++ Dilating automask
201112-22:46:39,738 nipype.interface INFO:
stderr 2020-11-12T22:46:39.738397: + Clustering voxels ...
201112-22:46:39,741 nipype.interface INFO:
stderr 2020-11-12T22:46:39.741056: + Largest cluster has 97970 voxels
201112-22:46:39,741 nipype.interface INFO:
stderr 2020-11-12T22:46:39.741458:++ 41294 voxels in the mask [out of 139264: 29.65%]
201112-22:46:39,741 nipype.interface INFO:
stderr 2020-11-12T22:46:39.741635:++ first 9 x-planes are zero [from R]
201112-22:46:39,741 nipype.interface INFO:
stderr 2020-11-12T22:46:39.741799:++ last 8 x-planes are zero [from L]
201112-22:46:39,741 nipype.interface INFO:
stderr 2020-11-12T22:46:39.741935:++ first 0 y-planes are zero [from P]
201112-22:46:39,742 nipype.interface INFO:
stderr 2020-11-12T22:46:39.742117:++ last 8 y-planes are zero [from A]
201112-22:46:39,742 nipype.interface INFO:
stderr 2020-11-12T22:46:39.742259:++ first 1 z-planes are zero [from I]
201112-22:46:39,742 nipype.interface INFO:
stderr 2020-11-12T22:46:39.742413:++ last 0 z-planes are zero [from S]
201112-22:46:39,747 nipype.interface INFO:
stderr 2020-11-12T22:46:39.747232:++ Output dataset ./uni_mask.nii.gz
201112-22:46:39,747 nipype.interface INFO:
stderr 2020-11-12T22:46:39.747483:++ applying mask to original data
201112-22:46:39,748 nipype.interface INFO:
stderr 2020-11-12T22:46:39.748639:++ Writing masked data
201112-22:46:39,765 nipype.interface INFO:
stderr 2020-11-12T22:46:39.765678:++ Output dataset ./uni_masked.nii.gz
201112-22:46:39,766 nipype.interface INFO:
stderr 2020-11-12T22:46:39.766247:++ CPU time = 0.000000 sec
201112-22:46:39,956 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:46:39,958 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks".
201112-22:46:39,965 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:46:40,413 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:46:40,415 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/cal_DVARS".
201112-22:46:40,421 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-22:46:41,42 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-22:46:41,44 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_extract_brain".
201112-22:46:41,51 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_motion_correct_mcflirt/sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc.nii.gz
201112-22:46:41,305 nipype.interface INFO:
stderr 2020-11-12T22:46:41.304975:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:46:41,305 nipype.interface INFO:
stderr 2020-11-12T22:46:41.305474:++ Authored by: A cast of thousands
201112-22:46:43,505 nipype.interface INFO:
stderr 2020-11-12T22:46:43.505052:++ Output dataset ./sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc.nii.gz
201112-22:46:43,718 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:46:43,720 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize".
201112-22:46:43,726 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_extract_brain/sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize/sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-22:46:45,564 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:46:45,566 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mask_normalize".
201112-22:46:45,571 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize/sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mask_normalize/sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:46:46,472 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:46:46,474 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean".
201112-22:46:46,481 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean/sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc.nii.gz
201112-22:46:46,736 nipype.interface INFO:
stderr 2020-11-12T22:46:46.736820:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:46:46,737 nipype.interface INFO:
stderr 2020-11-12T22:46:46.737564:++ Authored by: KR Hammett & RW Cox
201112-22:46:46,992 nipype.interface INFO:
stderr 2020-11-12T22:46:46.992419:++ Output dataset ./sub-181_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-22:46:47,182 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:46:47,183 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/norm_motion_params".
201112-22:46:47,190 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:46:47,424 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:46:47,426 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_motion_0/_scan_matching_run-3/motion_plot".
201112-22:46:47,430 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-22:46:47,877 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_motion_0.motion_plot".
201112-22:46:47,879 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_qc___movement_trans_plot".
201112-22:46:47,886 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:46:48,99 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___movement_trans_plot/_scan_matching_run-3/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/movement_trans_plot/_scan_matching_run-3/motion_trans_plot.png
201112-22:46:48,120 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_trans_plot".
201112-22:46:48,122 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_qc___movement_rot_plot".
201112-22:46:48,129 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:46:48,341 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___movement_rot_plot/_scan_matching_run-3/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/movement_rot_plot/_scan_matching_run-3/motion_rot_plot.png
201112-22:46:48,361 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_rot_plot".
201112-22:46:48,362 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/calc_motion_parameters".
201112-22:46:48,368 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:46:48,604 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-22:46:48,606 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_motion_params".
201112-22:46:48,613 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:46:48,848 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_params".
201112-22:46:48,850 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/calculate_FD".
201112-22:46:48,854 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-22:46:49,91 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-22:46:49,93 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_frame_wise_displacement_power".
201112-22:46:49,100 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:46:49,333 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_power".
201112-22:46:49,335 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/calc_power_parameters".
201112-22:46:49,341 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:46:49,578 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-22:46:49,580 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_power_params".
201112-22:46:49,587 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:46:49,828 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_power_params".
201112-22:46:49,831 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_movement_parameters".
201112-22:46:49,838 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:46:50,73 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_movement_parameters".
201112-22:46:50,74 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/func_despiked_0".
201112-22:46:50,80 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-181_ses-1_task-matching_run-3_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/func_despiked_0/sub-181_ses-1_task-matching_run-3_bold_calc.nii.gz
201112-22:46:50,336 nipype.interface INFO:
stderr 2020-11-12T22:46:50.335949:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:46:50,336 nipype.interface INFO:
stderr 2020-11-12T22:46:50.336462:++ Authored by: RW Cox
201112-22:46:50,338 nipype.interface INFO:
stderr 2020-11-12T22:46:50.338730:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:46:50,338 nipype.interface INFO:
stderr 2020-11-12T22:46:50.338730: such as /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/func_despiked_0/sub-181_ses-1_task-matching_run-3_bold_calc.nii.gz,
201112-22:46:50,339 nipype.interface INFO:
stderr 2020-11-12T22:46:50.338730: or viewing/combining it with volumes of differing obliquity,
201112-22:46:50,339 nipype.interface INFO:
stderr 2020-11-12T22:46:50.338730: you should consider running:
201112-22:46:50,339 nipype.interface INFO:
stderr 2020-11-12T22:46:50.338730: 3dWarp -deoblique
201112-22:46:50,339 nipype.interface INFO:
stderr 2020-11-12T22:46:50.338730: on this and other oblique datasets in the same session.
201112-22:46:50,339 nipype.interface INFO:
stderr 2020-11-12T22:46:50.338730: See 3dWarp -help for details.
201112-22:46:50,339 nipype.interface INFO:
stderr 2020-11-12T22:46:50.339493:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/func_despiked_0/sub-181_ses-1_task-matching_run-3_bold_calc.nii.gz is 28.005903 degrees from plumb.
201112-22:46:50,339 nipype.interface INFO:
stderr 2020-11-12T22:46:50.339649:++ Input dataset is in short format, but output will be in float format
201112-22:46:50,339 nipype.interface INFO:
stderr 2020-11-12T22:46:50.339790:++ ignoring first 0 time points, using last 99
201112-22:46:50,339 nipype.interface INFO:
stderr 2020-11-12T22:46:50.339928:++ using 99 time points => -corder 3
201112-22:46:50,340 nipype.interface INFO:
stderr 2020-11-12T22:46:50.340070:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/func_despiked_0/sub-181_ses-1_task-matching_run-3_bold_calc.nii.gz
201112-22:46:50,715 nipype.interface INFO:
stderr 2020-11-12T22:46:50.715823:++ 39157 voxels in the automask [out of 139264 in dataset]
201112-22:46:50,721 nipype.interface INFO:
stderr 2020-11-12T22:46:50.721609:++ 64965 voxels in the dilated automask [out of 139264 in dataset]
201112-22:46:50,730 nipype.interface INFO:
stderr 2020-11-12T22:46:50.730742:++ Procesing time series with OLD model fit algorithm
201112-22:46:50,731 nipype.interface INFO:
stderr 2020-11-12T22:46:50.731153:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-22:46:50,731 nipype.interface INFO:
stderr 2020-11-12T22:46:50.731340: + [ 3.457% .. 0.072% of normal distribution]
201112-22:46:50,731 nipype.interface INFO:
stderr 2020-11-12T22:46:50.731493: + [ 8.839% .. 3.125% of Laplace distribution]
201112-22:46:50,731 nipype.interface INFO:
stderr 2020-11-12T22:46:50.731658:++ start OpenMP thread #0
201112-22:46:54,399 nipype.interface INFO:
stderr 2020-11-12T22:46:54.399272:...........................
201112-22:46:54,399 nipype.interface INFO:
stderr 2020-11-12T22:46:54.399860:++ Elapsed despike time = 3s 669ms
201112-22:46:54,400 nipype.interface INFO:
stderr 2020-11-12T22:46:54.400044:
201112-22:46:54,400 nipype.interface INFO:
stderr 2020-11-12T22:46:54.400788:++ FINAL: 6431535 data points, 420509 edits [6.538%], 42629 big edits [0.663%]
201112-22:46:57,964 nipype.interface INFO:
stderr 2020-11-12T22:46:57.964352:++ Output dataset ./sub-181_ses-1_task-matching_run-3_bold_calc_despike.nii.gz
201112-22:46:58,185 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_despiked_0".
201112-22:46:58,187 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_matching_run-3/slice_timing".
201112-22:46:58,196 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:46:58,197 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_matching_run-3/slice_timing/sub-181_ses-1_task-matching_run-3_bold_calc_despike.nii.gz
201112-22:46:58,410 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:46:58,453 nipype.interface INFO:
stderr 2020-11-12T22:46:58.452921:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:46:58,455 nipype.interface INFO:
stderr 2020-11-12T22:46:58.455831:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:46:58,456 nipype.interface INFO:
stderr 2020-11-12T22:46:58.455831: such as /outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_matching_run-3/slice_timing/sub-181_ses-1_task-matching_run-3_bold_calc_despike.nii.gz,
201112-22:46:58,456 nipype.interface INFO:
stderr 2020-11-12T22:46:58.455831: or viewing/combining it with volumes of differing obliquity,
201112-22:46:58,456 nipype.interface INFO:
stderr 2020-11-12T22:46:58.455831: you should consider running:
201112-22:46:58,456 nipype.interface INFO:
stderr 2020-11-12T22:46:58.455831: 3dWarp -deoblique
201112-22:46:58,456 nipype.interface INFO:
stderr 2020-11-12T22:46:58.455831: on this and other oblique datasets in the same session.
201112-22:46:58,456 nipype.interface INFO:
stderr 2020-11-12T22:46:58.455831: See 3dWarp -help for details.
201112-22:46:58,456 nipype.interface INFO:
stderr 2020-11-12T22:46:58.456593:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_matching_run-3/slice_timing/sub-181_ses-1_task-matching_run-3_bold_calc_despike.nii.gz is 28.005903 degrees from plumb.
201112-22:47:02,279 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_slice_timing_correction_0.slice_timing".
201112-22:47:02,281 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique".
201112-22:47:02,331 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift.nii.gz
201112-22:47:02,586 nipype.interface INFO:
stderr 2020-11-12T22:47:02.586111:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:47:02,586 nipype.interface INFO:
stderr 2020-11-12T22:47:02.586601:++ Authored by: RW Cox
201112-22:47:02,597 nipype.interface INFO:
stderr 2020-11-12T22:47:02.597897:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift.nii.gz
201112-22:47:02,598 nipype.interface INFO:
stderr 2020-11-12T22:47:02.598759: + deoblique
201112-22:47:02,598 nipype.interface INFO:
stderr 2020-11-12T22:47:02.598940: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-22:47:04,423 nipype.interface INFO:
stderr 2020-11-12T22:47:04.423472:++ 3drefit processed 1 datasets
201112-22:47:04,640 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:47:04,642 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_reorient".
201112-22:47:04,650 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_reorient/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift.nii.gz
201112-22:47:07,81 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:47:07,83 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_RPI".
201112-22:47:07,90 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_RPI/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample.nii.gz
201112-22:47:07,346 nipype.interface INFO:
stderr 2020-11-12T22:47:07.346821:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:47:07,347 nipype.interface INFO:
stderr 2020-11-12T22:47:07.347363:++ Authored by: KR Hammett & RW Cox
201112-22:47:07,835 nipype.interface INFO:
stderr 2020-11-12T22:47:07.835480:++ Output dataset ./sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-22:47:08,28 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:47:08,30 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_generate_ref".
201112-22:47:08,36 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_RPI/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_generate_ref/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample.nii.gz
201112-22:47:08,301 nipype.interface INFO:
stderr 2020-11-12T22:47:08.301738:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:47:08,302 nipype.interface INFO:
stderr 2020-11-12T22:47:08.302445:++ Authored by: RW Cox
201112-22:47:08,313 nipype.interface INFO:
stderr 2020-11-12T22:47:08.313753:++ Coarse del was 10, replaced with 3
201112-22:48:32,26 nipype.interface INFO:
stderr 2020-11-12T22:48:32.026449:++ Max displacement in automask = 0.33 (mm) at sub-brick 1
201112-22:48:32,27 nipype.interface INFO:
stderr 2020-11-12T22:48:32.027382:++ Max delta displ in automask = 0.21 (mm) at sub-brick 35
201112-22:48:35,716 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:48:35,719 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_motion".
201112-22:48:35,726 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_motion/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-22:48:35,990 nipype.interface INFO:
stderr 2020-11-12T22:48:35.990287:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:48:35,990 nipype.interface INFO:
stderr 2020-11-12T22:48:35.990787:++ Authored by: KR Hammett & RW Cox
201112-22:48:36,624 nipype.interface INFO:
stderr 2020-11-12T22:48:36.624716:++ Output dataset ./sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-22:48:36,812 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:48:36,813 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_motion_correct_mcflirt".
201112-22:48:36,820 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_reorient/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_motion_correct_mcflirt/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_motion/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:48:54,897 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:48:54,906 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_motion_correct".
201112-22:48:54,914 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:48:55,148 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_correct".
201112-22:48:55,150 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_mean_skull".
201112-22:48:55,158 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_mean_skull/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-22:48:55,422 nipype.interface INFO:
stderr 2020-11-12T22:48:55.421882:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:48:55,422 nipype.interface INFO:
stderr 2020-11-12T22:48:55.422801:++ Authored by: KR Hammett & RW Cox
201112-22:48:55,940 nipype.interface INFO:
stderr 2020-11-12T22:48:55.939994:++ Output dataset ./sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-22:48:56,128 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:48:56,130 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass".
201112-22:48:56,136 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_mean_skull/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:48:58,22 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:48:58,24 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_dilate".
201112-22:48:58,30 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_dilate/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:48:58,690 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:48:58,692 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_mask".
201112-22:48:58,699 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_dilate/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_mask/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:48:59,152 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:48:59,153 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/unifize".
201112-22:48:59,160 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/unifize/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:48:59,423 nipype.interface INFO:
stderr 2020-11-12T22:48:59.423201:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:50:19,940 nipype.interface INFO:
stderr 2020-11-12T22:50:19.939915: + Pre-processing: IAV..UW[s4935]Im
201112-22:50:19,958 nipype.interface INFO:
stderr 2020-11-12T22:50:19.958340:++ Output dataset ./uni.nii.gz
201112-22:50:19,958 nipype.interface INFO:
stderr 2020-11-12T22:50:19.958737:++ ===== Elapsed = 80.5 sec
201112-22:50:20,161 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:50:20,163 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass".
201112-22:50:20,171 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:50:20,431 nipype.interface INFO:
stderr 2020-11-12T22:50:20.430893:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:50:20,431 nipype.interface INFO:
stderr 2020-11-12T22:50:20.431690:++ Authored by: Emperor Zhark
201112-22:50:20,434 nipype.interface INFO:
stderr 2020-11-12T22:50:20.434689:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:50:20,440 nipype.interface INFO:
stderr 2020-11-12T22:50:20.440007:++ Forming automask
201112-22:50:20,441 nipype.interface INFO:
stderr 2020-11-12T22:50:20.441809: + Fixed clip level = 418.606812
201112-22:50:20,446 nipype.interface INFO:
stderr 2020-11-12T22:50:20.446171: + Used gradual clip level = 345.853027 .. 467.801727
201112-22:50:20,446 nipype.interface INFO:
stderr 2020-11-12T22:50:20.446429: + Number voxels above clip level = 34005
201112-22:50:20,446 nipype.interface INFO:
stderr 2020-11-12T22:50:20.446618: + Clustering voxels ...
201112-22:50:20,448 nipype.interface INFO:
stderr 2020-11-12T22:50:20.448436: + Largest cluster has 33999 voxels
201112-22:50:20,450 nipype.interface INFO:
stderr 2020-11-12T22:50:20.450166: + Clustering voxels ...
201112-22:50:20,451 nipype.interface INFO:
stderr 2020-11-12T22:50:20.451367: + Largest cluster has 33384 voxels
201112-22:50:20,454 nipype.interface INFO:
stderr 2020-11-12T22:50:20.454752: + Filled 1065 voxels in small holes; now have 34449 voxels
201112-22:50:20,458 nipype.interface INFO:
stderr 2020-11-12T22:50:20.457995: + Filled 13 voxels in large holes; now have 34462 voxels
201112-22:50:20,459 nipype.interface INFO:
stderr 2020-11-12T22:50:20.459315: + Clustering voxels ...
201112-22:50:20,460 nipype.interface INFO:
stderr 2020-11-12T22:50:20.460484: + Largest cluster has 34458 voxels
201112-22:50:20,460 nipype.interface INFO:
stderr 2020-11-12T22:50:20.460712: + Clustering non-brain voxels ...
201112-22:50:20,460 nipype.interface INFO:
stderr 2020-11-12T22:50:20.460855: + Clustering voxels ...
201112-22:50:20,463 nipype.interface INFO:
stderr 2020-11-12T22:50:20.463856: + Largest cluster has 104618 voxels
201112-22:50:20,464 nipype.interface INFO:
stderr 2020-11-12T22:50:20.464192: + Mask now has 34646 voxels
201112-22:50:20,464 nipype.interface INFO:
stderr 2020-11-12T22:50:20.464593:++ Dilating automask
201112-22:50:20,476 nipype.interface INFO:
stderr 2020-11-12T22:50:20.476180: + Clustering voxels ...
201112-22:50:20,478 nipype.interface INFO:
stderr 2020-11-12T22:50:20.478618: + Largest cluster has 97970 voxels
201112-22:50:20,479 nipype.interface INFO:
stderr 2020-11-12T22:50:20.478980:++ 41294 voxels in the mask [out of 139264: 29.65%]
201112-22:50:20,479 nipype.interface INFO:
stderr 2020-11-12T22:50:20.479164:++ first 9 x-planes are zero [from R]
201112-22:50:20,479 nipype.interface INFO:
stderr 2020-11-12T22:50:20.479355:++ last 8 x-planes are zero [from L]
201112-22:50:20,479 nipype.interface INFO:
stderr 2020-11-12T22:50:20.479491:++ first 0 y-planes are zero [from P]
201112-22:50:20,479 nipype.interface INFO:
stderr 2020-11-12T22:50:20.479637:++ last 8 y-planes are zero [from A]
201112-22:50:20,479 nipype.interface INFO:
stderr 2020-11-12T22:50:20.479772:++ first 1 z-planes are zero [from I]
201112-22:50:20,479 nipype.interface INFO:
stderr 2020-11-12T22:50:20.479905:++ last 0 z-planes are zero [from S]
201112-22:50:20,484 nipype.interface INFO:
stderr 2020-11-12T22:50:20.484716:++ Output dataset ./uni_mask.nii.gz
201112-22:50:20,484 nipype.interface INFO:
stderr 2020-11-12T22:50:20.484893:++ applying mask to original data
201112-22:50:20,485 nipype.interface INFO:
stderr 2020-11-12T22:50:20.485693:++ Writing masked data
201112-22:50:20,501 nipype.interface INFO:
stderr 2020-11-12T22:50:20.501046:++ Output dataset ./uni_masked.nii.gz
201112-22:50:20,501 nipype.interface INFO:
stderr 2020-11-12T22:50:20.501388:++ CPU time = 0.000000 sec
201112-22:50:20,676 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:50:20,678 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks".
201112-22:50:20,685 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:50:21,118 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:50:21,120 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-22:50:21,124 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-22:50:21,359 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-22:50:21,361 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-22:50:21,368 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:50:21,625 nipype.interface INFO:
stderr 2020-11-12T22:50:21.625209:++ no -frac option: defaulting to -union
201112-22:50:21,625 nipype.interface INFO:
stderr 2020-11-12T22:50:21.625708:++ processing 1 input dataset(s), NN=2...
201112-22:50:21,625 nipype.interface INFO:
stderr 2020-11-12T22:50:21.625884:++ padding all datasets by 0 (for dilations)
201112-22:50:21,630 nipype.interface INFO:
stderr 2020-11-12T22:50:21.630885:++ frac 0 over 1 volumes gives min count 0
201112-22:50:21,631 nipype.interface INFO:
stderr 2020-11-12T22:50:21.631447:++ voxel limits: 0 clipped, 41198 survived, 98066 were zero
201112-22:50:21,631 nipype.interface INFO:
stderr 2020-11-12T22:50:21.631618:++ writing result sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-22:50:21,636 nipype.interface INFO:
stderr 2020-11-12T22:50:21.636446:++ Output dataset ./sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-22:50:21,825 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-22:50:21,826 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_functional_brain_mask".
201112-22:50:21,834 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:50:22,70 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask".
201112-22:50:22,72 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/functional_brain_mask_derivative_0".
201112-22:50:22,77 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-22:50:22,290 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-22:50:22,296 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:50:22,822 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201112-22:50:22,841 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.functional_brain_mask_derivative_0".
201112-22:50:22,843 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_extract_brain".
201112-22:50:22,851 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_motion_correct_mcflirt/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:50:23,105 nipype.interface INFO:
stderr 2020-11-12T22:50:23.105686:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:50:23,106 nipype.interface INFO:
stderr 2020-11-12T22:50:23.106223:++ Authored by: A cast of thousands
201112-22:50:25,608 nipype.interface INFO:
stderr 2020-11-12T22:50:25.608412:++ Output dataset ./sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:50:25,821 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:50:25,822 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize".
201112-22:50:25,827 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_extract_brain/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-22:50:27,808 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:50:27,810 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-22:50:27,818 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:50:28,623 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_mean".
201112-22:50:28,624 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-22:50:28,630 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:50:28,879 nipype.interface INFO:
stderr 2020-11-12T22:50:28.879655:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:50:28,880 nipype.interface INFO:
stderr 2020-11-12T22:50:28.880078:++ Authored by: KR Hammett & RW Cox
201112-22:50:29,338 nipype.interface INFO:
stderr 2020-11-12T22:50:29.338403:++ Output dataset ./sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:50:29,529 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.functional_mean".
201112-22:50:29,531 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-3/std_dev".
201112-22:50:29,538 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-3/std_dev/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:50:29,793 nipype.interface INFO:
stderr 2020-11-12T22:50:29.793509:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:50:29,794 nipype.interface INFO:
stderr 2020-11-12T22:50:29.794007:++ Authored by: KR Hammett & RW Cox
201112-22:50:30,225 nipype.interface INFO:
stderr 2020-11-12T22:50:30.225652:++ Output dataset ./sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:50:30,414 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev".
201112-22:50:30,416 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_functional_preprocessed".
201112-22:50:30,423 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:50:30,655 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed".
201112-22:50:30,657 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mask_normalize".
201112-22:50:30,663 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mask_normalize/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:50:31,606 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:50:31,608 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_functional_preprocessed_mask".
201112-22:50:31,616 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:50:31,847 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed_mask".
201112-22:50:31,849 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean".
201112-22:50:31,856 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:50:32,99 nipype.interface INFO:
stderr 2020-11-12T22:50:32.099387:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:50:32,99 nipype.interface INFO:
stderr 2020-11-12T22:50:32.099763:++ Authored by: KR Hammett & RW Cox
201112-22:50:32,539 nipype.interface INFO:
stderr 2020-11-12T22:50:32.539297:++ Output dataset ./sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-22:50:32,720 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:50:32,722 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_mean_functional".
201112-22:50:32,729 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:50:32,964 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional".
201112-22:50:32,966 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/norm_motion_params".
201112-22:50:32,973 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:50:33,207 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:50:33,209 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_slice_time_corrected".
201112-22:50:33,216 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:50:33,452 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_slice_time_corrected".
201112-22:50:33,453 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_raw_functional".
201112-22:50:33,462 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:50:33,972 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_raw_functional".
201112-22:50:33,974 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_matching_run-3/check_func_scan".
201112-22:50:34,5 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:50:34,244 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.check_func_scan".
201112-22:50:34,255 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_matching_run-2/select_scan_params".
201112-22:50:34,285 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:50:34,524 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.select_scan_params".
201112-22:50:34,536 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_matching_run-2/s3_scan_params".
201112-22:50:34,544 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:50:34,778 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.s3_scan_params".
201112-22:50:34,781 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.scan_params_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/scan_params_0".
201112-22:50:34,791 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:50:35,31 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.scan_params_0".
201112-22:50:35,34 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_matching_run-2/selectrest".
201112-22:50:35,69 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:50:35,314 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.selectrest".
201112-22:50:35,325 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_matching_run-2/check_for_s3".
201112-22:50:35,331 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:50:35,630 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.check_for_s3".
201112-22:50:35,632 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-181_ses-1/edit_func_0/_scan_matching_run-2/func_get_idx".
201112-22:50:35,638 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:50:35,879 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.edit_func_0.func_get_idx".
201112-22:50:35,881 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-181_ses-1/edit_func_0/_scan_matching_run-2/func_drop_trs".
201112-22:50:35,889 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-181/ses-1/func/sub-181_ses-1_task-matching_run-2_bold.nii.gz[0..98] -expr "a" -prefix sub-181_ses-1_task-matching_run-2_bold_calc.nii.gz
201112-22:50:36,151 nipype.interface INFO:
stderr 2020-11-12T22:50:36.151657:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:50:36,152 nipype.interface INFO:
stderr 2020-11-12T22:50:36.152263:++ Authored by: A cast of thousands
201112-22:50:40,533 nipype.interface INFO:
stderr 2020-11-12T22:50:40.533783:++ Output dataset ./sub-181_ses-1_task-matching_run-2_bold_calc.nii.gz
201112-22:50:40,739 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.edit_func_0.func_drop_trs".
201112-22:50:40,741 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique".
201112-22:50:40,783 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-181_ses-1_task-matching_run-2_bold_calc.nii.gz
201112-22:50:41,37 nipype.interface INFO:
stderr 2020-11-12T22:50:41.037409:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:50:41,37 nipype.interface INFO:
stderr 2020-11-12T22:50:41.037912:++ Authored by: RW Cox
201112-22:50:41,48 nipype.interface INFO:
stderr 2020-11-12T22:50:41.048721:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-181_ses-1_task-matching_run-2_bold_calc.nii.gz
201112-22:50:41,50 nipype.interface INFO:
stderr 2020-11-12T22:50:41.049964: + deoblique
201112-22:50:41,50 nipype.interface INFO:
stderr 2020-11-12T22:50:41.050267: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-181_ses-1_task-matching_run-2_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-181_ses-1_task-matching_run-2_bold_calc.nii.gz in NIFTI storage)
201112-22:50:43,964 nipype.interface INFO:
stderr 2020-11-12T22:50:43.964449:++ 3drefit processed 1 datasets
201112-22:50:44,184 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:50:44,186 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_reorient".
201112-22:50:44,193 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-1_task-matching_run-2_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_reorient/sub-181_ses-1_task-matching_run-2_bold_calc.nii.gz
201112-22:50:47,701 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:50:47,703 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_RPI".
201112-22:50:47,710 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-2_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_RPI/sub-181_ses-1_task-matching_run-2_bold_calc_resample.nii.gz
201112-22:50:47,974 nipype.interface INFO:
stderr 2020-11-12T22:50:47.974725:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:50:47,975 nipype.interface INFO:
stderr 2020-11-12T22:50:47.975277:++ Authored by: KR Hammett & RW Cox
201112-22:50:48,359 nipype.interface INFO:
stderr 2020-11-12T22:50:48.359834:++ Output dataset ./sub-181_ses-1_task-matching_run-2_bold_calc_resample_tstat.nii.gz
201112-22:50:48,545 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:50:48,546 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_generate_ref".
201112-22:50:48,553 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-1_task-matching_run-2_bold_calc_resample.1D -1Dmatrix_save sub-181_ses-1_task-matching_run-2_bold_calc_resample.aff12.1D -prefix sub-181_ses-1_task-matching_run-2_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_RPI/sub-181_ses-1_task-matching_run-2_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-1_task-matching_run-2_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_generate_ref/sub-181_ses-1_task-matching_run-2_bold_calc_resample.nii.gz
201112-22:50:48,815 nipype.interface INFO:
stderr 2020-11-12T22:50:48.815218:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:50:48,815 nipype.interface INFO:
stderr 2020-11-12T22:50:48.815734:++ Authored by: RW Cox
201112-22:50:48,831 nipype.interface INFO:
stderr 2020-11-12T22:50:48.831396:++ Coarse del was 10, replaced with 3
201112-22:52:12,805 nipype.interface INFO:
stderr 2020-11-12T22:52:12.805511:++ Max displacement in automask = 0.29 (mm) at sub-brick 2
201112-22:52:12,806 nipype.interface INFO:
stderr 2020-11-12T22:52:12.806196:++ Max delta displ in automask = 0.16 (mm) at sub-brick 40
201112-22:52:15,706 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:52:15,708 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_motion".
201112-22:52:15,714 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-2_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_motion/sub-181_ses-1_task-matching_run-2_bold_calc_resample_volreg.nii.gz
201112-22:52:15,976 nipype.interface INFO:
stderr 2020-11-12T22:52:15.976791:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:52:15,977 nipype.interface INFO:
stderr 2020-11-12T22:52:15.977616:++ Authored by: KR Hammett & RW Cox
201112-22:52:16,360 nipype.interface INFO:
stderr 2020-11-12T22:52:16.360507:++ Output dataset ./sub-181_ses-1_task-matching_run-2_bold_calc_resample_volreg_tstat.nii.gz
201112-22:52:16,545 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:52:16,547 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_motion_correct_mcflirt".
201112-22:52:16,554 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_reorient/sub-181_ses-1_task-matching_run-2_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_motion_correct_mcflirt/sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_motion/sub-181_ses-1_task-matching_run-2_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:52:35,426 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:52:35,434 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/calculate_FDJ".
201112-22:52:35,441 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:52:35,674 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:52:35,675 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_frame_wise_displacement_jenkinson".
201112-22:52:35,683 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:52:35,913 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_jenkinson".
201112-22:52:35,915 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_max_displacement".
201112-22:52:35,923 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:52:36,152 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_max_displacement".
201112-22:52:36,154 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_coordinate_transformation".
201112-22:52:36,171 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:52:36,430 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_coordinate_transformation".
201112-22:52:36,440 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_mean_skull".
201112-22:52:36,447 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_mean_skull/sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf.nii.gz
201112-22:52:36,709 nipype.interface INFO:
stderr 2020-11-12T22:52:36.708883:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:52:36,709 nipype.interface INFO:
stderr 2020-11-12T22:52:36.709658:++ Authored by: KR Hammett & RW Cox
201112-22:52:37,124 nipype.interface INFO:
stderr 2020-11-12T22:52:37.124359:++ Output dataset ./sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat.nii.gz
201112-22:52:37,312 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:52:37,314 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass".
201112-22:52:37,320 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_mean_skull/sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:52:39,234 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:52:39,235 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_dilate".
201112-22:52:39,241 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_dilate/sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:52:39,956 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:52:39,958 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_mask".
201112-22:52:39,964 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_dilate/sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_mask/sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:52:40,433 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:52:40,435 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/unifize".
201112-22:52:40,441 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/unifize/sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:52:40,696 nipype.interface INFO:
stderr 2020-11-12T22:52:40.696509:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:54:00,937 nipype.interface INFO:
stderr 2020-11-12T22:54:00.937434: + Pre-processing: IAV..UW[s4945]Im
201112-22:54:00,954 nipype.interface INFO:
stderr 2020-11-12T22:54:00.954738:++ Output dataset ./uni.nii.gz
201112-22:54:00,955 nipype.interface INFO:
stderr 2020-11-12T22:54:00.955225:++ ===== Elapsed = 80.3 sec
201112-22:54:01,165 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:54:01,167 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass".
201112-22:54:01,175 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:54:01,437 nipype.interface INFO:
stderr 2020-11-12T22:54:01.437608:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:54:01,438 nipype.interface INFO:
stderr 2020-11-12T22:54:01.438348:++ Authored by: Emperor Zhark
201112-22:54:01,441 nipype.interface INFO:
stderr 2020-11-12T22:54:01.441416:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:54:01,448 nipype.interface INFO:
stderr 2020-11-12T22:54:01.448088:++ Forming automask
201112-22:54:01,449 nipype.interface INFO:
stderr 2020-11-12T22:54:01.449883: + Fixed clip level = 418.811829
201112-22:54:01,454 nipype.interface INFO:
stderr 2020-11-12T22:54:01.454501: + Used gradual clip level = 344.816467 .. 466.766632
201112-22:54:01,454 nipype.interface INFO:
stderr 2020-11-12T22:54:01.454761: + Number voxels above clip level = 33977
201112-22:54:01,454 nipype.interface INFO:
stderr 2020-11-12T22:54:01.454955: + Clustering voxels ...
201112-22:54:01,456 nipype.interface INFO:
stderr 2020-11-12T22:54:01.456511: + Largest cluster has 33972 voxels
201112-22:54:01,458 nipype.interface INFO:
stderr 2020-11-12T22:54:01.458356: + Clustering voxels ...
201112-22:54:01,460 nipype.interface INFO:
stderr 2020-11-12T22:54:01.460011: + Largest cluster has 33314 voxels
201112-22:54:01,463 nipype.interface INFO:
stderr 2020-11-12T22:54:01.463484: + Filled 1083 voxels in small holes; now have 34397 voxels
201112-22:54:01,466 nipype.interface INFO:
stderr 2020-11-12T22:54:01.466712: + Filled 9 voxels in large holes; now have 34406 voxels
201112-22:54:01,468 nipype.interface INFO:
stderr 2020-11-12T22:54:01.468041: + Clustering voxels ...
201112-22:54:01,469 nipype.interface INFO:
stderr 2020-11-12T22:54:01.469213: + Largest cluster has 34402 voxels
201112-22:54:01,469 nipype.interface INFO:
stderr 2020-11-12T22:54:01.469445: + Clustering non-brain voxels ...
201112-22:54:01,469 nipype.interface INFO:
stderr 2020-11-12T22:54:01.469588: + Clustering voxels ...
201112-22:54:01,472 nipype.interface INFO:
stderr 2020-11-12T22:54:01.472447: + Largest cluster has 104678 voxels
201112-22:54:01,472 nipype.interface INFO:
stderr 2020-11-12T22:54:01.472776: + Mask now has 34586 voxels
201112-22:54:01,472 nipype.interface INFO:
stderr 2020-11-12T22:54:01.472931:++ Dilating automask
201112-22:54:01,481 nipype.interface INFO:
stderr 2020-11-12T22:54:01.481360: + Clustering voxels ...
201112-22:54:01,483 nipype.interface INFO:
stderr 2020-11-12T22:54:01.483773: + Largest cluster has 98045 voxels
201112-22:54:01,484 nipype.interface INFO:
stderr 2020-11-12T22:54:01.484116:++ 41219 voxels in the mask [out of 139264: 29.60%]
201112-22:54:01,484 nipype.interface INFO:
stderr 2020-11-12T22:54:01.484290:++ first 9 x-planes are zero [from R]
201112-22:54:01,484 nipype.interface INFO:
stderr 2020-11-12T22:54:01.484451:++ last 8 x-planes are zero [from L]
201112-22:54:01,484 nipype.interface INFO:
stderr 2020-11-12T22:54:01.484593:++ first 0 y-planes are zero [from P]
201112-22:54:01,484 nipype.interface INFO:
stderr 2020-11-12T22:54:01.484743:++ last 8 y-planes are zero [from A]
201112-22:54:01,484 nipype.interface INFO:
stderr 2020-11-12T22:54:01.484878:++ first 1 z-planes are zero [from I]
201112-22:54:01,485 nipype.interface INFO:
stderr 2020-11-12T22:54:01.485040:++ last 0 z-planes are zero [from S]
201112-22:54:01,489 nipype.interface INFO:
stderr 2020-11-12T22:54:01.489785:++ Output dataset ./uni_mask.nii.gz
201112-22:54:01,490 nipype.interface INFO:
stderr 2020-11-12T22:54:01.489999:++ applying mask to original data
201112-22:54:01,490 nipype.interface INFO:
stderr 2020-11-12T22:54:01.490786:++ Writing masked data
201112-22:54:01,505 nipype.interface INFO:
stderr 2020-11-12T22:54:01.505539:++ Output dataset ./uni_masked.nii.gz
201112-22:54:01,506 nipype.interface INFO:
stderr 2020-11-12T22:54:01.506034:++ CPU time = 0.000000 sec
201112-22:54:01,689 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:54:01,691 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks".
201112-22:54:01,698 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:54:02,120 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:54:02,122 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/cal_DVARS".
201112-22:54:02,128 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-22:54:02,741 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-22:54:02,742 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_extract_brain".
201112-22:54:02,750 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_motion_correct_mcflirt/sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc.nii.gz
201112-22:54:03,7 nipype.interface INFO:
stderr 2020-11-12T22:54:03.007872:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:54:03,8 nipype.interface INFO:
stderr 2020-11-12T22:54:03.008416:++ Authored by: A cast of thousands
201112-22:54:05,252 nipype.interface INFO:
stderr 2020-11-12T22:54:05.252305:++ Output dataset ./sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc.nii.gz
201112-22:54:05,450 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:54:05,452 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize".
201112-22:54:05,458 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_extract_brain/sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize/sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-22:54:07,328 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:54:07,330 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mask_normalize".
201112-22:54:07,337 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize/sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mask_normalize/sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:54:08,291 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:54:08,292 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean".
201112-22:54:08,299 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean/sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc.nii.gz
201112-22:54:08,563 nipype.interface INFO:
stderr 2020-11-12T22:54:08.563619:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:54:08,564 nipype.interface INFO:
stderr 2020-11-12T22:54:08.564414:++ Authored by: KR Hammett & RW Cox
201112-22:54:08,817 nipype.interface INFO:
stderr 2020-11-12T22:54:08.817301:++ Output dataset ./sub-181_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-22:54:09,9 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:54:09,11 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/norm_motion_params".
201112-22:54:09,17 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:54:09,255 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:54:09,256 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_motion_0/_scan_matching_run-2/motion_plot".
201112-22:54:09,262 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-22:54:09,722 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_motion_0.motion_plot".
201112-22:54:09,724 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_qc___movement_trans_plot".
201112-22:54:09,732 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:54:09,943 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___movement_trans_plot/_scan_matching_run-2/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/movement_trans_plot/_scan_matching_run-2/motion_trans_plot.png
201112-22:54:09,966 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_trans_plot".
201112-22:54:09,968 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_qc___movement_rot_plot".
201112-22:54:09,976 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:54:10,188 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___movement_rot_plot/_scan_matching_run-2/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/movement_rot_plot/_scan_matching_run-2/motion_rot_plot.png
201112-22:54:10,212 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_rot_plot".
201112-22:54:10,214 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/calc_motion_parameters".
201112-22:54:10,222 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:54:10,460 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-22:54:10,462 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_motion_params".
201112-22:54:10,470 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:54:10,705 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_params".
201112-22:54:10,707 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/calculate_FD".
201112-22:54:10,712 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-22:54:10,948 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-22:54:10,950 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_frame_wise_displacement_power".
201112-22:54:10,957 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:54:11,192 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_power".
201112-22:54:11,194 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/calc_power_parameters".
201112-22:54:11,200 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:54:11,435 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-22:54:11,437 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_power_params".
201112-22:54:11,446 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:54:11,686 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_power_params".
201112-22:54:11,688 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_movement_parameters".
201112-22:54:11,696 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:54:11,935 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_movement_parameters".
201112-22:54:11,938 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/func_despiked_0".
201112-22:54:11,944 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-181_ses-1_task-matching_run-2_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/func_despiked_0/sub-181_ses-1_task-matching_run-2_bold_calc.nii.gz
201112-22:54:12,219 nipype.interface INFO:
stderr 2020-11-12T22:54:12.218890:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:54:12,219 nipype.interface INFO:
stderr 2020-11-12T22:54:12.219934:++ Authored by: RW Cox
201112-22:54:12,224 nipype.interface INFO:
stderr 2020-11-12T22:54:12.223934:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:54:12,224 nipype.interface INFO:
stderr 2020-11-12T22:54:12.223934: such as /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/func_despiked_0/sub-181_ses-1_task-matching_run-2_bold_calc.nii.gz,
201112-22:54:12,224 nipype.interface INFO:
stderr 2020-11-12T22:54:12.223934: or viewing/combining it with volumes of differing obliquity,
201112-22:54:12,224 nipype.interface INFO:
stderr 2020-11-12T22:54:12.223934: you should consider running:
201112-22:54:12,224 nipype.interface INFO:
stderr 2020-11-12T22:54:12.223934: 3dWarp -deoblique
201112-22:54:12,224 nipype.interface INFO:
stderr 2020-11-12T22:54:12.223934: on this and other oblique datasets in the same session.
201112-22:54:12,225 nipype.interface INFO:
stderr 2020-11-12T22:54:12.223934: See 3dWarp -help for details.
201112-22:54:12,225 nipype.interface INFO:
stderr 2020-11-12T22:54:12.225266:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/func_despiked_0/sub-181_ses-1_task-matching_run-2_bold_calc.nii.gz is 28.005903 degrees from plumb.
201112-22:54:12,225 nipype.interface INFO:
stderr 2020-11-12T22:54:12.225552:++ Input dataset is in short format, but output will be in float format
201112-22:54:12,225 nipype.interface INFO:
stderr 2020-11-12T22:54:12.225801:++ ignoring first 0 time points, using last 99
201112-22:54:12,226 nipype.interface INFO:
stderr 2020-11-12T22:54:12.226059:++ using 99 time points => -corder 3
201112-22:54:12,226 nipype.interface INFO:
stderr 2020-11-12T22:54:12.226294:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/func_despiked_0/sub-181_ses-1_task-matching_run-2_bold_calc.nii.gz
201112-22:54:12,659 nipype.interface INFO:
stderr 2020-11-12T22:54:12.659891:++ 39104 voxels in the automask [out of 139264 in dataset]
201112-22:54:12,665 nipype.interface INFO:
stderr 2020-11-12T22:54:12.665382:++ 64829 voxels in the dilated automask [out of 139264 in dataset]
201112-22:54:12,674 nipype.interface INFO:
stderr 2020-11-12T22:54:12.674692:++ Procesing time series with OLD model fit algorithm
201112-22:54:12,675 nipype.interface INFO:
stderr 2020-11-12T22:54:12.675130:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-22:54:12,675 nipype.interface INFO:
stderr 2020-11-12T22:54:12.675331: + [ 3.457% .. 0.072% of normal distribution]
201112-22:54:12,675 nipype.interface INFO:
stderr 2020-11-12T22:54:12.675516: + [ 8.839% .. 3.125% of Laplace distribution]
201112-22:54:12,675 nipype.interface INFO:
stderr 2020-11-12T22:54:12.675678:++ start OpenMP thread #0
201112-22:54:16,257 nipype.interface INFO:
stderr 2020-11-12T22:54:16.257117:...........................
201112-22:54:16,257 nipype.interface INFO:
stderr 2020-11-12T22:54:16.257730:++ Elapsed despike time = 3s 582ms
201112-22:54:16,257 nipype.interface INFO:
stderr 2020-11-12T22:54:16.257886:
201112-22:54:16,258 nipype.interface INFO:
stderr 2020-11-12T22:54:16.258671:++ FINAL: 6418071 data points, 415210 edits [6.469%], 39784 big edits [0.620%]
201112-22:54:19,789 nipype.interface INFO:
stderr 2020-11-12T22:54:19.789103:++ Output dataset ./sub-181_ses-1_task-matching_run-2_bold_calc_despike.nii.gz
201112-22:54:20,9 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_despiked_0".
201112-22:54:20,10 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_matching_run-2/slice_timing".
201112-22:54:20,20 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:54:20,21 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_matching_run-2/slice_timing/sub-181_ses-1_task-matching_run-2_bold_calc_despike.nii.gz
201112-22:54:20,233 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:54:20,284 nipype.interface INFO:
stderr 2020-11-12T22:54:20.284243:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:54:20,288 nipype.interface INFO:
stderr 2020-11-12T22:54:20.287965:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:54:20,288 nipype.interface INFO:
stderr 2020-11-12T22:54:20.287965: such as /outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_matching_run-2/slice_timing/sub-181_ses-1_task-matching_run-2_bold_calc_despike.nii.gz,
201112-22:54:20,288 nipype.interface INFO:
stderr 2020-11-12T22:54:20.287965: or viewing/combining it with volumes of differing obliquity,
201112-22:54:20,288 nipype.interface INFO:
stderr 2020-11-12T22:54:20.287965: you should consider running:
201112-22:54:20,288 nipype.interface INFO:
stderr 2020-11-12T22:54:20.287965: 3dWarp -deoblique
201112-22:54:20,288 nipype.interface INFO:
stderr 2020-11-12T22:54:20.287965: on this and other oblique datasets in the same session.
201112-22:54:20,288 nipype.interface INFO:
stderr 2020-11-12T22:54:20.287965: See 3dWarp -help for details.
201112-22:54:20,288 nipype.interface INFO:
stderr 2020-11-12T22:54:20.288903:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_matching_run-2/slice_timing/sub-181_ses-1_task-matching_run-2_bold_calc_despike.nii.gz is 28.005903 degrees from plumb.
201112-22:54:24,83 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_slice_timing_correction_0.slice_timing".
201112-22:54:24,84 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique".
201112-22:54:24,136 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift.nii.gz
201112-22:54:24,387 nipype.interface INFO:
stderr 2020-11-12T22:54:24.387278:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:54:24,387 nipype.interface INFO:
stderr 2020-11-12T22:54:24.387679:++ Authored by: RW Cox
201112-22:54:24,396 nipype.interface INFO:
stderr 2020-11-12T22:54:24.396758:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift.nii.gz
201112-22:54:24,397 nipype.interface INFO:
stderr 2020-11-12T22:54:24.397762: + deoblique
201112-22:54:24,398 nipype.interface INFO:
stderr 2020-11-12T22:54:24.398094: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-22:54:26,183 nipype.interface INFO:
stderr 2020-11-12T22:54:26.183224:++ 3drefit processed 1 datasets
201112-22:54:26,397 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:54:26,399 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_reorient".
201112-22:54:26,405 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_reorient/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift.nii.gz
201112-22:54:28,879 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:54:28,881 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_RPI".
201112-22:54:28,888 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_RPI/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample.nii.gz
201112-22:54:29,153 nipype.interface INFO:
stderr 2020-11-12T22:54:29.153681:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:54:29,154 nipype.interface INFO:
stderr 2020-11-12T22:54:29.154520:++ Authored by: KR Hammett & RW Cox
201112-22:54:29,645 nipype.interface INFO:
stderr 2020-11-12T22:54:29.645741:++ Output dataset ./sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-22:54:29,833 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:54:29,834 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_generate_ref".
201112-22:54:29,841 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_RPI/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_generate_ref/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample.nii.gz
201112-22:54:30,111 nipype.interface INFO:
stderr 2020-11-12T22:54:30.111452:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:54:30,112 nipype.interface INFO:
stderr 2020-11-12T22:54:30.112200:++ Authored by: RW Cox
201112-22:54:30,122 nipype.interface INFO:
stderr 2020-11-12T22:54:30.122899:++ Coarse del was 10, replaced with 3
201112-22:55:53,820 nipype.interface INFO:
stderr 2020-11-12T22:55:53.820690:++ Max displacement in automask = 0.30 (mm) at sub-brick 2
201112-22:55:53,821 nipype.interface INFO:
stderr 2020-11-12T22:55:53.821372:++ Max delta displ in automask = 0.17 (mm) at sub-brick 40
201112-22:55:57,648 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:55:57,650 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_motion".
201112-22:55:57,658 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_motion/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-22:55:57,918 nipype.interface INFO:
stderr 2020-11-12T22:55:57.918555:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:55:57,919 nipype.interface INFO:
stderr 2020-11-12T22:55:57.919535:++ Authored by: KR Hammett & RW Cox
201112-22:55:58,552 nipype.interface INFO:
stderr 2020-11-12T22:55:58.552607:++ Output dataset ./sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-22:55:58,739 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:55:58,741 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_motion_correct_mcflirt".
201112-22:55:58,748 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_reorient/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_motion_correct_mcflirt/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_motion/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:56:16,693 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:56:16,701 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_motion_correct".
201112-22:56:16,711 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:56:16,943 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_correct".
201112-22:56:16,945 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_mean_skull".
201112-22:56:16,952 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_mean_skull/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-22:56:17,211 nipype.interface INFO:
stderr 2020-11-12T22:56:17.211113:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:56:17,211 nipype.interface INFO:
stderr 2020-11-12T22:56:17.211745:++ Authored by: KR Hammett & RW Cox
201112-22:56:17,723 nipype.interface INFO:
stderr 2020-11-12T22:56:17.723438:++ Output dataset ./sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-22:56:17,892 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:56:17,893 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass".
201112-22:56:17,899 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_mean_skull/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:56:19,775 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:56:19,778 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_dilate".
201112-22:56:19,784 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_dilate/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:56:20,479 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:56:20,482 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_mask".
201112-22:56:20,489 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_dilate/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_mask/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:56:20,950 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:56:20,952 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/unifize".
201112-22:56:20,958 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/unifize/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:56:21,217 nipype.interface INFO:
stderr 2020-11-12T22:56:21.217392:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:57:41,733 nipype.interface INFO:
stderr 2020-11-12T22:57:41.733349: + Pre-processing: IAV..UW[s4961]Im
201112-22:57:41,754 nipype.interface INFO:
stderr 2020-11-12T22:57:41.754530:++ Output dataset ./uni.nii.gz
201112-22:57:41,755 nipype.interface INFO:
stderr 2020-11-12T22:57:41.755023:++ ===== Elapsed = 80.5 sec
201112-22:57:41,970 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:57:41,972 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass".
201112-22:57:41,982 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:57:42,253 nipype.interface INFO:
stderr 2020-11-12T22:57:42.253758:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:57:42,254 nipype.interface INFO:
stderr 2020-11-12T22:57:42.254610:++ Authored by: Emperor Zhark
201112-22:57:42,258 nipype.interface INFO:
stderr 2020-11-12T22:57:42.258141:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:57:42,264 nipype.interface INFO:
stderr 2020-11-12T22:57:42.264205:++ Forming automask
201112-22:57:42,266 nipype.interface INFO:
stderr 2020-11-12T22:57:42.266660: + Fixed clip level = 418.805939
201112-22:57:42,271 nipype.interface INFO:
stderr 2020-11-12T22:57:42.270940: + Used gradual clip level = 345.041321 .. 466.636597
201112-22:57:42,271 nipype.interface INFO:
stderr 2020-11-12T22:57:42.271314: + Number voxels above clip level = 33988
201112-22:57:42,271 nipype.interface INFO:
stderr 2020-11-12T22:57:42.271474: + Clustering voxels ...
201112-22:57:42,272 nipype.interface INFO:
stderr 2020-11-12T22:57:42.272758: + Largest cluster has 33983 voxels
201112-22:57:42,274 nipype.interface INFO:
stderr 2020-11-12T22:57:42.274220: + Clustering voxels ...
201112-22:57:42,275 nipype.interface INFO:
stderr 2020-11-12T22:57:42.275500: + Largest cluster has 33322 voxels
201112-22:57:42,278 nipype.interface INFO:
stderr 2020-11-12T22:57:42.278903: + Filled 1077 voxels in small holes; now have 34399 voxels
201112-22:57:42,282 nipype.interface INFO:
stderr 2020-11-12T22:57:42.282236: + Filled 10 voxels in large holes; now have 34409 voxels
201112-22:57:42,283 nipype.interface INFO:
stderr 2020-11-12T22:57:42.283637: + Clustering voxels ...
201112-22:57:42,284 nipype.interface INFO:
stderr 2020-11-12T22:57:42.284821: + Largest cluster has 34403 voxels
201112-22:57:42,285 nipype.interface INFO:
stderr 2020-11-12T22:57:42.285062: + Clustering non-brain voxels ...
201112-22:57:42,285 nipype.interface INFO:
stderr 2020-11-12T22:57:42.285208: + Clustering voxels ...
201112-22:57:42,288 nipype.interface INFO:
stderr 2020-11-12T22:57:42.288101: + Largest cluster has 104665 voxels
201112-22:57:42,288 nipype.interface INFO:
stderr 2020-11-12T22:57:42.288451: + Mask now has 34599 voxels
201112-22:57:42,288 nipype.interface INFO:
stderr 2020-11-12T22:57:42.288609:++ Dilating automask
201112-22:57:42,296 nipype.interface INFO:
stderr 2020-11-12T22:57:42.296418: + Clustering voxels ...
201112-22:57:42,299 nipype.interface INFO:
stderr 2020-11-12T22:57:42.299072: + Largest cluster has 98047 voxels
201112-22:57:42,299 nipype.interface INFO:
stderr 2020-11-12T22:57:42.299489:++ 41217 voxels in the mask [out of 139264: 29.60%]
201112-22:57:42,299 nipype.interface INFO:
stderr 2020-11-12T22:57:42.299659:++ first 9 x-planes are zero [from R]
201112-22:57:42,299 nipype.interface INFO:
stderr 2020-11-12T22:57:42.299820:++ last 8 x-planes are zero [from L]
201112-22:57:42,299 nipype.interface INFO:
stderr 2020-11-12T22:57:42.299962:++ first 0 y-planes are zero [from P]
201112-22:57:42,300 nipype.interface INFO:
stderr 2020-11-12T22:57:42.300121:++ last 8 y-planes are zero [from A]
201112-22:57:42,300 nipype.interface INFO:
stderr 2020-11-12T22:57:42.300256:++ first 1 z-planes are zero [from I]
201112-22:57:42,300 nipype.interface INFO:
stderr 2020-11-12T22:57:42.300389:++ last 0 z-planes are zero [from S]
201112-22:57:42,305 nipype.interface INFO:
stderr 2020-11-12T22:57:42.305262:++ Output dataset ./uni_mask.nii.gz
201112-22:57:42,305 nipype.interface INFO:
stderr 2020-11-12T22:57:42.305535:++ applying mask to original data
201112-22:57:42,306 nipype.interface INFO:
stderr 2020-11-12T22:57:42.306502:++ Writing masked data
201112-22:57:42,322 nipype.interface INFO:
stderr 2020-11-12T22:57:42.322861:++ Output dataset ./uni_masked.nii.gz
201112-22:57:42,323 nipype.interface INFO:
stderr 2020-11-12T22:57:42.323508:++ CPU time = 0.000000 sec
201112-22:57:42,513 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:57:42,515 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks".
201112-22:57:42,522 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:57:42,971 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:57:42,972 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-22:57:42,977 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-22:57:43,215 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-22:57:43,217 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-22:57:43,224 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:57:43,483 nipype.interface INFO:
stderr 2020-11-12T22:57:43.483437:++ no -frac option: defaulting to -union
201112-22:57:43,484 nipype.interface INFO:
stderr 2020-11-12T22:57:43.484008:++ processing 1 input dataset(s), NN=2...
201112-22:57:43,484 nipype.interface INFO:
stderr 2020-11-12T22:57:43.484195:++ padding all datasets by 0 (for dilations)
201112-22:57:43,490 nipype.interface INFO:
stderr 2020-11-12T22:57:43.490279:++ frac 0 over 1 volumes gives min count 0
201112-22:57:43,490 nipype.interface INFO:
stderr 2020-11-12T22:57:43.490971:++ voxel limits: 0 clipped, 41129 survived, 98135 were zero
201112-22:57:43,491 nipype.interface INFO:
stderr 2020-11-12T22:57:43.491180:++ writing result sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-22:57:43,497 nipype.interface INFO:
stderr 2020-11-12T22:57:43.497211:++ Output dataset ./sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-22:57:43,684 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-22:57:43,686 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_functional_brain_mask".
201112-22:57:43,693 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:57:43,928 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask".
201112-22:57:43,930 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/functional_brain_mask_derivative_0".
201112-22:57:43,935 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-22:57:44,148 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-22:57:44,155 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:57:44,672 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201112-22:57:44,690 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.functional_brain_mask_derivative_0".
201112-22:57:44,692 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_extract_brain".
201112-22:57:44,699 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_motion_correct_mcflirt/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:57:44,949 nipype.interface INFO:
stderr 2020-11-12T22:57:44.949333:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:57:44,949 nipype.interface INFO:
stderr 2020-11-12T22:57:44.949761:++ Authored by: A cast of thousands
201112-22:57:47,427 nipype.interface INFO:
stderr 2020-11-12T22:57:47.426888:++ Output dataset ./sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:57:47,632 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:57:47,634 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize".
201112-22:57:47,640 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_extract_brain/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-22:57:49,607 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:57:49,609 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-22:57:49,616 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:57:50,450 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_mean".
201112-22:57:50,452 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-22:57:50,459 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:57:50,716 nipype.interface INFO:
stderr 2020-11-12T22:57:50.716418:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:57:50,716 nipype.interface INFO:
stderr 2020-11-12T22:57:50.716872:++ Authored by: KR Hammett & RW Cox
201112-22:57:51,174 nipype.interface INFO:
stderr 2020-11-12T22:57:51.174383:++ Output dataset ./sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:57:51,357 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.functional_mean".
201112-22:57:51,359 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-2/std_dev".
201112-22:57:51,367 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-2/std_dev/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:57:51,621 nipype.interface INFO:
stderr 2020-11-12T22:57:51.621091:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:57:51,621 nipype.interface INFO:
stderr 2020-11-12T22:57:51.621605:++ Authored by: KR Hammett & RW Cox
201112-22:57:52,45 nipype.interface INFO:
stderr 2020-11-12T22:57:52.045232:++ Output dataset ./sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:57:52,217 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev".
201112-22:57:52,219 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_functional_preprocessed".
201112-22:57:52,226 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:57:52,461 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed".
201112-22:57:52,463 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mask_normalize".
201112-22:57:52,468 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mask_normalize/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:57:53,402 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:57:53,403 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_functional_preprocessed_mask".
201112-22:57:53,410 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:57:53,642 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed_mask".
201112-22:57:53,644 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean".
201112-22:57:53,649 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:57:53,912 nipype.interface INFO:
stderr 2020-11-12T22:57:53.912331:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:57:53,913 nipype.interface INFO:
stderr 2020-11-12T22:57:53.913039:++ Authored by: KR Hammett & RW Cox
201112-22:57:54,358 nipype.interface INFO:
stderr 2020-11-12T22:57:54.358307:++ Output dataset ./sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-22:57:54,547 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:57:54,549 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_mean_functional".
201112-22:57:54,557 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:57:54,792 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional".
201112-22:57:54,793 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/norm_motion_params".
201112-22:57:54,799 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:57:55,38 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:57:55,40 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_slice_time_corrected".
201112-22:57:55,48 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:57:55,285 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_slice_time_corrected".
201112-22:57:55,287 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_raw_functional".
201112-22:57:55,295 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:57:55,618 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_raw_functional".
201112-22:57:55,620 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_matching_run-2/check_func_scan".
201112-22:57:55,653 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:57:55,892 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.check_func_scan".
201112-22:57:55,903 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_matching_run-1/select_scan_params".
201112-22:57:55,934 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:57:56,178 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.select_scan_params".
201112-22:57:56,191 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_matching_run-1/s3_scan_params".
201112-22:57:56,201 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:57:56,442 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.s3_scan_params".
201112-22:57:56,445 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.scan_params_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/scan_params_0".
201112-22:57:56,455 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:57:56,697 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.scan_params_0".
201112-22:57:56,700 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_matching_run-1/selectrest".
201112-22:57:56,734 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:57:56,978 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.selectrest".
201112-22:57:56,988 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_matching_run-1/check_for_s3".
201112-22:57:56,994 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:57:57,288 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.check_for_s3".
201112-22:57:57,290 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-181_ses-1/edit_func_0/_scan_matching_run-1/func_get_idx".
201112-22:57:57,297 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:57:57,536 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.edit_func_0.func_get_idx".
201112-22:57:57,538 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-181_ses-1/edit_func_0/_scan_matching_run-1/func_drop_trs".
201112-22:57:57,545 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-181/ses-1/func/sub-181_ses-1_task-matching_run-1_bold.nii.gz[0..98] -expr "a" -prefix sub-181_ses-1_task-matching_run-1_bold_calc.nii.gz
201112-22:57:57,806 nipype.interface INFO:
stderr 2020-11-12T22:57:57.806034:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:57:57,806 nipype.interface INFO:
stderr 2020-11-12T22:57:57.806604:++ Authored by: A cast of thousands
201112-22:58:02,225 nipype.interface INFO:
stderr 2020-11-12T22:58:02.225067:++ Output dataset ./sub-181_ses-1_task-matching_run-1_bold_calc.nii.gz
201112-22:58:02,439 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.edit_func_0.func_drop_trs".
201112-22:58:02,441 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique".
201112-22:58:02,481 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-181_ses-1_task-matching_run-1_bold_calc.nii.gz
201112-22:58:02,736 nipype.interface INFO:
stderr 2020-11-12T22:58:02.736459:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:58:02,737 nipype.interface INFO:
stderr 2020-11-12T22:58:02.737001:++ Authored by: RW Cox
201112-22:58:02,748 nipype.interface INFO:
stderr 2020-11-12T22:58:02.748352:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-181_ses-1_task-matching_run-1_bold_calc.nii.gz
201112-22:58:02,749 nipype.interface INFO:
stderr 2020-11-12T22:58:02.749793: + deoblique
201112-22:58:02,750 nipype.interface INFO:
stderr 2020-11-12T22:58:02.750118: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-181_ses-1_task-matching_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-181_ses-1_task-matching_run-1_bold_calc.nii.gz in NIFTI storage)
201112-22:58:05,649 nipype.interface INFO:
stderr 2020-11-12T22:58:05.649575:++ 3drefit processed 1 datasets
201112-22:58:05,862 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:58:05,864 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_reorient".
201112-22:58:05,870 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-1_task-matching_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_reorient/sub-181_ses-1_task-matching_run-1_bold_calc.nii.gz
201112-22:58:09,425 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:58:09,426 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_RPI".
201112-22:58:09,433 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_RPI/sub-181_ses-1_task-matching_run-1_bold_calc_resample.nii.gz
201112-22:58:09,697 nipype.interface INFO:
stderr 2020-11-12T22:58:09.697525:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:58:09,698 nipype.interface INFO:
stderr 2020-11-12T22:58:09.698341:++ Authored by: KR Hammett & RW Cox
201112-22:58:10,80 nipype.interface INFO:
stderr 2020-11-12T22:58:10.080188:++ Output dataset ./sub-181_ses-1_task-matching_run-1_bold_calc_resample_tstat.nii.gz
201112-22:58:10,266 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:58:10,267 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_generate_ref".
201112-22:58:10,275 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-1_task-matching_run-1_bold_calc_resample.1D -1Dmatrix_save sub-181_ses-1_task-matching_run-1_bold_calc_resample.aff12.1D -prefix sub-181_ses-1_task-matching_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_RPI/sub-181_ses-1_task-matching_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-1_task-matching_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_generate_ref/sub-181_ses-1_task-matching_run-1_bold_calc_resample.nii.gz
201112-22:58:10,521 nipype.interface INFO:
stderr 2020-11-12T22:58:10.521292:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:58:10,521 nipype.interface INFO:
stderr 2020-11-12T22:58:10.521826:++ Authored by: RW Cox
201112-22:58:10,534 nipype.interface INFO:
stderr 2020-11-12T22:58:10.534038:++ Coarse del was 10, replaced with 3
201112-22:59:34,515 nipype.interface INFO:
stderr 2020-11-12T22:59:34.515342:++ Max displacement in automask = 0.28 (mm) at sub-brick 2
201112-22:59:34,515 nipype.interface INFO:
stderr 2020-11-12T22:59:34.515974:++ Max delta displ in automask = 0.16 (mm) at sub-brick 54
201112-22:59:37,407 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:59:37,410 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_motion".
201112-22:59:37,417 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_motion/sub-181_ses-1_task-matching_run-1_bold_calc_resample_volreg.nii.gz
201112-22:59:37,680 nipype.interface INFO:
stderr 2020-11-12T22:59:37.680803:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:59:37,681 nipype.interface INFO:
stderr 2020-11-12T22:59:37.681438:++ Authored by: KR Hammett & RW Cox
201112-22:59:38,68 nipype.interface INFO:
stderr 2020-11-12T22:59:38.068423:++ Output dataset ./sub-181_ses-1_task-matching_run-1_bold_calc_resample_volreg_tstat.nii.gz
201112-22:59:38,256 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:59:38,258 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_motion_correct_mcflirt".
201112-22:59:38,265 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_reorient/sub-181_ses-1_task-matching_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_motion_correct_mcflirt/sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_motion/sub-181_ses-1_task-matching_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:59:57,364 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:59:57,371 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/calculate_FDJ".
201112-22:59:57,380 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:59:57,616 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:59:57,617 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_frame_wise_displacement_jenkinson".
201112-22:59:57,626 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:59:57,861 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_jenkinson".
201112-22:59:57,863 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_max_displacement".
201112-22:59:57,872 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:59:58,106 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_max_displacement".
201112-22:59:58,108 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_coordinate_transformation".
201112-22:59:58,127 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:59:58,387 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_coordinate_transformation".
201112-22:59:58,397 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_mean_skull".
201112-22:59:58,403 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_mean_skull/sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf.nii.gz
201112-22:59:58,658 nipype.interface INFO:
stderr 2020-11-12T22:59:58.658183:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:59:58,658 nipype.interface INFO:
stderr 2020-11-12T22:59:58.658639:++ Authored by: KR Hammett & RW Cox
201112-22:59:59,72 nipype.interface INFO:
stderr 2020-11-12T22:59:59.072751:++ Output dataset ./sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat.nii.gz
201112-22:59:59,252 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:59:59,253 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass".
201112-22:59:59,259 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_mean_skull/sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-23:00:01,160 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-23:00:01,162 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_dilate".
201112-23:00:01,168 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_dilate/sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-23:00:01,883 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-23:00:01,884 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_mask".
201112-23:00:01,891 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_dilate/sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_mask/sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-23:00:02,324 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-23:00:02,325 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/unifize".
201112-23:00:02,331 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/unifize/sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-23:00:02,578 nipype.interface INFO:
stderr 2020-11-12T23:00:02.578304:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:01:23,133 nipype.interface INFO:
stderr 2020-11-12T23:01:23.133823: + Pre-processing: IAV..UW[s4907]Im
201112-23:01:23,152 nipype.interface INFO:
stderr 2020-11-12T23:01:23.152805:++ Output dataset ./uni.nii.gz
201112-23:01:23,153 nipype.interface INFO:
stderr 2020-11-12T23:01:23.153320:++ ===== Elapsed = 80.6 sec
201112-23:01:23,368 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-23:01:23,371 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass".
201112-23:01:23,379 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass/uni.nii.gz
201112-23:01:23,642 nipype.interface INFO:
stderr 2020-11-12T23:01:23.641898:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:01:23,643 nipype.interface INFO:
stderr 2020-11-12T23:01:23.643021:++ Authored by: Emperor Zhark
201112-23:01:23,645 nipype.interface INFO:
stderr 2020-11-12T23:01:23.645897:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass/uni.nii.gz
201112-23:01:23,651 nipype.interface INFO:
stderr 2020-11-12T23:01:23.651120:++ Forming automask
201112-23:01:23,653 nipype.interface INFO:
stderr 2020-11-12T23:01:23.653064: + Fixed clip level = 417.988861
201112-23:01:23,657 nipype.interface INFO:
stderr 2020-11-12T23:01:23.657731: + Used gradual clip level = 346.192902 .. 468.007538
201112-23:01:23,658 nipype.interface INFO:
stderr 2020-11-12T23:01:23.658114: + Number voxels above clip level = 34053
201112-23:01:23,658 nipype.interface INFO:
stderr 2020-11-12T23:01:23.658295: + Clustering voxels ...
201112-23:01:23,659 nipype.interface INFO:
stderr 2020-11-12T23:01:23.659508: + Largest cluster has 34050 voxels
201112-23:01:23,661 nipype.interface INFO:
stderr 2020-11-12T23:01:23.660982: + Clustering voxels ...
201112-23:01:23,662 nipype.interface INFO:
stderr 2020-11-12T23:01:23.662199: + Largest cluster has 33377 voxels
201112-23:01:23,665 nipype.interface INFO:
stderr 2020-11-12T23:01:23.665881: + Filled 1087 voxels in small holes; now have 34464 voxels
201112-23:01:23,668 nipype.interface INFO:
stderr 2020-11-12T23:01:23.668195: + Filled 6 voxels in large holes; now have 34470 voxels
201112-23:01:23,669 nipype.interface INFO:
stderr 2020-11-12T23:01:23.669561: + Clustering voxels ...
201112-23:01:23,670 nipype.interface INFO:
stderr 2020-11-12T23:01:23.670743: + Largest cluster has 34466 voxels
201112-23:01:23,671 nipype.interface INFO:
stderr 2020-11-12T23:01:23.670985: + Clustering non-brain voxels ...
201112-23:01:23,671 nipype.interface INFO:
stderr 2020-11-12T23:01:23.671131: + Clustering voxels ...
201112-23:01:23,674 nipype.interface INFO:
stderr 2020-11-12T23:01:23.674052: + Largest cluster has 104641 voxels
201112-23:01:23,674 nipype.interface INFO:
stderr 2020-11-12T23:01:23.674398: + Mask now has 34623 voxels
201112-23:01:23,674 nipype.interface INFO:
stderr 2020-11-12T23:01:23.674563:++ Dilating automask
201112-23:01:23,682 nipype.interface INFO:
stderr 2020-11-12T23:01:23.682843: + Clustering voxels ...
201112-23:01:23,685 nipype.interface INFO:
stderr 2020-11-12T23:01:23.685842: + Largest cluster has 98046 voxels
201112-23:01:23,686 nipype.interface INFO:
stderr 2020-11-12T23:01:23.686316:++ 41218 voxels in the mask [out of 139264: 29.60%]
201112-23:01:23,686 nipype.interface INFO:
stderr 2020-11-12T23:01:23.686496:++ first 9 x-planes are zero [from R]
201112-23:01:23,686 nipype.interface INFO:
stderr 2020-11-12T23:01:23.686659:++ last 8 x-planes are zero [from L]
201112-23:01:23,686 nipype.interface INFO:
stderr 2020-11-12T23:01:23.686799:++ first 0 y-planes are zero [from P]
201112-23:01:23,686 nipype.interface INFO:
stderr 2020-11-12T23:01:23.686965:++ last 8 y-planes are zero [from A]
201112-23:01:23,687 nipype.interface INFO:
stderr 2020-11-12T23:01:23.687108:++ first 1 z-planes are zero [from I]
201112-23:01:23,687 nipype.interface INFO:
stderr 2020-11-12T23:01:23.687241:++ last 0 z-planes are zero [from S]
201112-23:01:23,692 nipype.interface INFO:
stderr 2020-11-12T23:01:23.692037:++ Output dataset ./uni_mask.nii.gz
201112-23:01:23,692 nipype.interface INFO:
stderr 2020-11-12T23:01:23.692305:++ applying mask to original data
201112-23:01:23,693 nipype.interface INFO:
stderr 2020-11-12T23:01:23.693412:++ Writing masked data
201112-23:01:23,710 nipype.interface INFO:
stderr 2020-11-12T23:01:23.710215:++ Output dataset ./uni_masked.nii.gz
201112-23:01:23,710 nipype.interface INFO:
stderr 2020-11-12T23:01:23.710750:++ CPU time = 0.000000 sec
201112-23:01:23,899 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-23:01:23,901 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks".
201112-23:01:23,909 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-23:01:24,357 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-23:01:24,360 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/cal_DVARS".
201112-23:01:24,369 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-23:01:24,994 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-23:01:24,996 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_extract_brain".
201112-23:01:25,4 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_motion_correct_mcflirt/sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-23:01:25,260 nipype.interface INFO:
stderr 2020-11-12T23:01:25.260400:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:01:25,260 nipype.interface INFO:
stderr 2020-11-12T23:01:25.260912:++ Authored by: A cast of thousands
201112-23:01:27,486 nipype.interface INFO:
stderr 2020-11-12T23:01:27.486795:++ Output dataset ./sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-23:01:27,691 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-23:01:27,693 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize".
201112-23:01:27,699 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_extract_brain/sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize/sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-23:01:29,587 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-23:01:29,589 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mask_normalize".
201112-23:01:29,595 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize/sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mask_normalize/sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-23:01:30,521 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-23:01:30,522 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean".
201112-23:01:30,528 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean/sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-23:01:30,787 nipype.interface INFO:
stderr 2020-11-12T23:01:30.787275:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:01:30,787 nipype.interface INFO:
stderr 2020-11-12T23:01:30.787786:++ Authored by: KR Hammett & RW Cox
201112-23:01:31,41 nipype.interface INFO:
stderr 2020-11-12T23:01:31.041260:++ Output dataset ./sub-181_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-23:01:31,213 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-23:01:31,214 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/norm_motion_params".
201112-23:01:31,220 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-23:01:31,452 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-23:01:31,454 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_motion_0/_scan_matching_run-1/motion_plot".
201112-23:01:31,458 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-23:01:31,924 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_motion_0.motion_plot".
201112-23:01:31,926 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_qc___movement_trans_plot".
201112-23:01:31,933 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:01:32,144 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___movement_trans_plot/_scan_matching_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/movement_trans_plot/_scan_matching_run-1/motion_trans_plot.png
201112-23:01:32,163 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_trans_plot".
201112-23:01:32,165 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_qc___movement_rot_plot".
201112-23:01:32,171 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:01:32,382 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___movement_rot_plot/_scan_matching_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/movement_rot_plot/_scan_matching_run-1/motion_rot_plot.png
201112-23:01:32,406 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___movement_rot_plot".
201112-23:01:32,408 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/calc_motion_parameters".
201112-23:01:32,415 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-23:01:32,657 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-23:01:32,658 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_motion_params".
201112-23:01:32,665 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:01:32,902 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_params".
201112-23:01:32,904 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/calculate_FD".
201112-23:01:32,910 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-23:01:33,148 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-23:01:33,150 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_frame_wise_displacement_power".
201112-23:01:33,157 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:01:33,391 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_frame_wise_displacement_power".
201112-23:01:33,392 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/calc_power_parameters".
201112-23:01:33,399 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-23:01:33,636 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-23:01:33,638 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_power_params".
201112-23:01:33,646 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:01:33,880 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_power_params".
201112-23:01:33,883 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_movement_parameters".
201112-23:01:33,890 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:01:34,128 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_movement_parameters".
201112-23:01:34,130 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/func_despiked_0".
201112-23:01:34,136 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-181_ses-1_task-matching_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/func_despiked_0/sub-181_ses-1_task-matching_run-1_bold_calc.nii.gz
201112-23:01:34,405 nipype.interface INFO:
stderr 2020-11-12T23:01:34.405291:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:01:34,405 nipype.interface INFO:
stderr 2020-11-12T23:01:34.405900:++ Authored by: RW Cox
201112-23:01:34,409 nipype.interface INFO:
stderr 2020-11-12T23:01:34.409740:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-23:01:34,410 nipype.interface INFO:
stderr 2020-11-12T23:01:34.409740: such as /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/func_despiked_0/sub-181_ses-1_task-matching_run-1_bold_calc.nii.gz,
201112-23:01:34,410 nipype.interface INFO:
stderr 2020-11-12T23:01:34.409740: or viewing/combining it with volumes of differing obliquity,
201112-23:01:34,410 nipype.interface INFO:
stderr 2020-11-12T23:01:34.409740: you should consider running:
201112-23:01:34,410 nipype.interface INFO:
stderr 2020-11-12T23:01:34.409740: 3dWarp -deoblique
201112-23:01:34,410 nipype.interface INFO:
stderr 2020-11-12T23:01:34.409740: on this and other oblique datasets in the same session.
201112-23:01:34,410 nipype.interface INFO:
stderr 2020-11-12T23:01:34.409740: See 3dWarp -help for details.
201112-23:01:34,410 nipype.interface INFO:
stderr 2020-11-12T23:01:34.410861:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/func_despiked_0/sub-181_ses-1_task-matching_run-1_bold_calc.nii.gz is 28.005903 degrees from plumb.
201112-23:01:34,411 nipype.interface INFO:
stderr 2020-11-12T23:01:34.411115:++ Input dataset is in short format, but output will be in float format
201112-23:01:34,411 nipype.interface INFO:
stderr 2020-11-12T23:01:34.411337:++ ignoring first 0 time points, using last 99
201112-23:01:34,411 nipype.interface INFO:
stderr 2020-11-12T23:01:34.411554:++ using 99 time points => -corder 3
201112-23:01:34,411 nipype.interface INFO:
stderr 2020-11-12T23:01:34.411764:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/func_despiked_0/sub-181_ses-1_task-matching_run-1_bold_calc.nii.gz
201112-23:01:34,843 nipype.interface INFO:
stderr 2020-11-12T23:01:34.842930:++ 39081 voxels in the automask [out of 139264 in dataset]
201112-23:01:34,848 nipype.interface INFO:
stderr 2020-11-12T23:01:34.848362:++ 64831 voxels in the dilated automask [out of 139264 in dataset]
201112-23:01:34,857 nipype.interface INFO:
stderr 2020-11-12T23:01:34.857037:++ Procesing time series with OLD model fit algorithm
201112-23:01:34,857 nipype.interface INFO:
stderr 2020-11-12T23:01:34.857228:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-23:01:34,857 nipype.interface INFO:
stderr 2020-11-12T23:01:34.857391: + [ 3.457% .. 0.072% of normal distribution]
201112-23:01:34,857 nipype.interface INFO:
stderr 2020-11-12T23:01:34.857545: + [ 8.839% .. 3.125% of Laplace distribution]
201112-23:01:34,857 nipype.interface INFO:
stderr 2020-11-12T23:01:34.857704:++ start OpenMP thread #0
201112-23:01:38,514 nipype.interface INFO:
stderr 2020-11-12T23:01:38.514569:...........................
201112-23:01:38,515 nipype.interface INFO:
stderr 2020-11-12T23:01:38.515214:++ Elapsed despike time = 3s 657ms
201112-23:01:38,515 nipype.interface INFO:
stderr 2020-11-12T23:01:38.515388:
201112-23:01:38,516 nipype.interface INFO:
stderr 2020-11-12T23:01:38.516103:++ FINAL: 6418269 data points, 415985 edits [6.481%], 41111 big edits [0.641%]
201112-23:01:42,57 nipype.interface INFO:
stderr 2020-11-12T23:01:42.057169:++ Output dataset ./sub-181_ses-1_task-matching_run-1_bold_calc_despike.nii.gz
201112-23:01:42,287 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_despiked_0".
201112-23:01:42,289 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_matching_run-1/slice_timing".
201112-23:01:42,299 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-23:01:42,300 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_matching_run-1/slice_timing/sub-181_ses-1_task-matching_run-1_bold_calc_despike.nii.gz
201112-23:01:42,512 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-23:01:42,565 nipype.interface INFO:
stderr 2020-11-12T23:01:42.564872:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:01:42,569 nipype.interface INFO:
stderr 2020-11-12T23:01:42.569678:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-23:01:42,570 nipype.interface INFO:
stderr 2020-11-12T23:01:42.569678: such as /outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_matching_run-1/slice_timing/sub-181_ses-1_task-matching_run-1_bold_calc_despike.nii.gz,
201112-23:01:42,570 nipype.interface INFO:
stderr 2020-11-12T23:01:42.569678: or viewing/combining it with volumes of differing obliquity,
201112-23:01:42,570 nipype.interface INFO:
stderr 2020-11-12T23:01:42.569678: you should consider running:
201112-23:01:42,570 nipype.interface INFO:
stderr 2020-11-12T23:01:42.569678: 3dWarp -deoblique
201112-23:01:42,570 nipype.interface INFO:
stderr 2020-11-12T23:01:42.569678: on this and other oblique datasets in the same session.
201112-23:01:42,570 nipype.interface INFO:
stderr 2020-11-12T23:01:42.569678: See 3dWarp -help for details.
201112-23:01:42,571 nipype.interface INFO:
stderr 2020-11-12T23:01:42.570983:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-1/func_slice_timing_correction_0/_scan_matching_run-1/slice_timing/sub-181_ses-1_task-matching_run-1_bold_calc_despike.nii.gz is 28.005903 degrees from plumb.
201112-23:01:46,362 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_slice_timing_correction_0.slice_timing".
201112-23:01:46,364 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique".
201112-23:01:46,416 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift.nii.gz
201112-23:01:46,670 nipype.interface INFO:
stderr 2020-11-12T23:01:46.670586:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:01:46,671 nipype.interface INFO:
stderr 2020-11-12T23:01:46.671104:++ Authored by: RW Cox
201112-23:01:46,682 nipype.interface INFO:
stderr 2020-11-12T23:01:46.682485:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift.nii.gz
201112-23:01:46,683 nipype.interface INFO:
stderr 2020-11-12T23:01:46.683621: + deoblique
201112-23:01:46,683 nipype.interface INFO:
stderr 2020-11-12T23:01:46.683914: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-23:01:48,480 nipype.interface INFO:
stderr 2020-11-12T23:01:48.480585:++ 3drefit processed 1 datasets
201112-23:01:48,695 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-23:01:48,696 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_reorient".
201112-23:01:48,705 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_reorient/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift.nii.gz
201112-23:01:51,139 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-23:01:51,141 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_RPI".
201112-23:01:51,146 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_RPI/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-23:01:51,408 nipype.interface INFO:
stderr 2020-11-12T23:01:51.408725:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:01:51,409 nipype.interface INFO:
stderr 2020-11-12T23:01:51.409764:++ Authored by: KR Hammett & RW Cox
201112-23:01:51,899 nipype.interface INFO:
stderr 2020-11-12T23:01:51.899581:++ Output dataset ./sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-23:01:52,91 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-23:01:52,93 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_generate_ref".
201112-23:01:52,100 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_RPI/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_generate_ref/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-23:01:52,357 nipype.interface INFO:
stderr 2020-11-12T23:01:52.357412:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:01:52,357 nipype.interface INFO:
stderr 2020-11-12T23:01:52.357908:++ Authored by: RW Cox
201112-23:01:52,368 nipype.interface INFO:
stderr 2020-11-12T23:01:52.368176:++ Coarse del was 10, replaced with 3
201112-23:03:16,181 nipype.interface INFO:
stderr 2020-11-12T23:03:16.181568:++ Max displacement in automask = 0.28 (mm) at sub-brick 2
201112-23:03:16,182 nipype.interface INFO:
stderr 2020-11-12T23:03:16.182220:++ Max delta displ in automask = 0.16 (mm) at sub-brick 54
201112-23:03:19,942 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-23:03:19,944 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_motion".
201112-23:03:19,952 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_motion/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-23:03:20,235 nipype.interface INFO:
stderr 2020-11-12T23:03:20.235226:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:03:20,235 nipype.interface INFO:
stderr 2020-11-12T23:03:20.235783:++ Authored by: KR Hammett & RW Cox
201112-23:03:20,868 nipype.interface INFO:
stderr 2020-11-12T23:03:20.868806:++ Output dataset ./sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-23:03:21,59 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-23:03:21,61 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_motion_correct_mcflirt".
201112-23:03:21,69 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_reorient/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_motion_correct_mcflirt/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_motion/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-23:03:39,403 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-23:03:39,411 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_motion_correct".
201112-23:03:39,420 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:03:39,671 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_correct".
201112-23:03:39,673 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_mean_skull".
201112-23:03:39,680 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_mean_skull/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-23:03:39,943 nipype.interface INFO:
stderr 2020-11-12T23:03:39.943606:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:03:39,944 nipype.interface INFO:
stderr 2020-11-12T23:03:39.944435:++ Authored by: KR Hammett & RW Cox
201112-23:03:40,467 nipype.interface INFO:
stderr 2020-11-12T23:03:40.467785:++ Output dataset ./sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-23:03:40,660 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-23:03:40,662 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass".
201112-23:03:40,668 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_mean_skull/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-23:03:42,555 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-23:03:42,557 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_dilate".
201112-23:03:42,563 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_dilate/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-23:03:43,215 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-23:03:43,216 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_mask".
201112-23:03:43,223 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_dilate/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_mask/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-23:03:43,672 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-23:03:43,674 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/unifize".
201112-23:03:43,680 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/unifize/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-23:03:43,938 nipype.interface INFO:
stderr 2020-11-12T23:03:43.938442:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:05:04,403 nipype.interface INFO:
stderr 2020-11-12T23:05:04.402980: + Pre-processing: IAV..UW[s4910]Im
201112-23:05:04,421 nipype.interface INFO:
stderr 2020-11-12T23:05:04.421644:++ Output dataset ./uni.nii.gz
201112-23:05:04,422 nipype.interface INFO:
stderr 2020-11-12T23:05:04.422091:++ ===== Elapsed = 80.5 sec
201112-23:05:04,634 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-23:05:04,636 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass".
201112-23:05:04,644 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass/uni.nii.gz
201112-23:05:04,909 nipype.interface INFO:
stderr 2020-11-12T23:05:04.909636:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:05:04,910 nipype.interface INFO:
stderr 2020-11-12T23:05:04.910430:++ Authored by: Emperor Zhark
201112-23:05:04,913 nipype.interface INFO:
stderr 2020-11-12T23:05:04.913674:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass/uni.nii.gz
201112-23:05:04,919 nipype.interface INFO:
stderr 2020-11-12T23:05:04.919713:++ Forming automask
201112-23:05:04,921 nipype.interface INFO:
stderr 2020-11-12T23:05:04.921717: + Fixed clip level = 418.158722
201112-23:05:04,926 nipype.interface INFO:
stderr 2020-11-12T23:05:04.926390: + Used gradual clip level = 345.848816 .. 468.039398
201112-23:05:04,926 nipype.interface INFO:
stderr 2020-11-12T23:05:04.926787: + Number voxels above clip level = 34049
201112-23:05:04,927 nipype.interface INFO:
stderr 2020-11-12T23:05:04.927189: + Clustering voxels ...
201112-23:05:04,928 nipype.interface INFO:
stderr 2020-11-12T23:05:04.928455: + Largest cluster has 34046 voxels
201112-23:05:04,929 nipype.interface INFO:
stderr 2020-11-12T23:05:04.929910: + Clustering voxels ...
201112-23:05:04,931 nipype.interface INFO:
stderr 2020-11-12T23:05:04.931105: + Largest cluster has 33367 voxels
201112-23:05:04,934 nipype.interface INFO:
stderr 2020-11-12T23:05:04.934497: + Filled 1084 voxels in small holes; now have 34451 voxels
201112-23:05:04,936 nipype.interface INFO:
stderr 2020-11-12T23:05:04.936753: + Filled 6 voxels in large holes; now have 34457 voxels
201112-23:05:04,938 nipype.interface INFO:
stderr 2020-11-12T23:05:04.938140: + Clustering voxels ...
201112-23:05:04,939 nipype.interface INFO:
stderr 2020-11-12T23:05:04.939326: + Largest cluster has 34453 voxels
201112-23:05:04,939 nipype.interface INFO:
stderr 2020-11-12T23:05:04.939561: + Clustering non-brain voxels ...
201112-23:05:04,939 nipype.interface INFO:
stderr 2020-11-12T23:05:04.939706: + Clustering voxels ...
201112-23:05:04,942 nipype.interface INFO:
stderr 2020-11-12T23:05:04.942877: + Largest cluster has 104654 voxels
201112-23:05:04,943 nipype.interface INFO:
stderr 2020-11-12T23:05:04.943363: + Mask now has 34610 voxels
201112-23:05:04,943 nipype.interface INFO:
stderr 2020-11-12T23:05:04.943537:++ Dilating automask
201112-23:05:04,951 nipype.interface INFO:
stderr 2020-11-12T23:05:04.951344: + Clustering voxels ...
201112-23:05:04,954 nipype.interface INFO:
stderr 2020-11-12T23:05:04.953994: + Largest cluster has 98066 voxels
201112-23:05:04,954 nipype.interface INFO:
stderr 2020-11-12T23:05:04.954411:++ 41198 voxels in the mask [out of 139264: 29.58%]
201112-23:05:04,954 nipype.interface INFO:
stderr 2020-11-12T23:05:04.954581:++ first 9 x-planes are zero [from R]
201112-23:05:04,954 nipype.interface INFO:
stderr 2020-11-12T23:05:04.954749:++ last 8 x-planes are zero [from L]
201112-23:05:04,954 nipype.interface INFO:
stderr 2020-11-12T23:05:04.954886:++ first 0 y-planes are zero [from P]
201112-23:05:04,955 nipype.interface INFO:
stderr 2020-11-12T23:05:04.955071:++ last 8 y-planes are zero [from A]
201112-23:05:04,955 nipype.interface INFO:
stderr 2020-11-12T23:05:04.955214:++ first 1 z-planes are zero [from I]
201112-23:05:04,955 nipype.interface INFO:
stderr 2020-11-12T23:05:04.955364:++ last 0 z-planes are zero [from S]
201112-23:05:04,960 nipype.interface INFO:
stderr 2020-11-12T23:05:04.960721:++ Output dataset ./uni_mask.nii.gz
201112-23:05:04,961 nipype.interface INFO:
stderr 2020-11-12T23:05:04.961056:++ applying mask to original data
201112-23:05:04,962 nipype.interface INFO:
stderr 2020-11-12T23:05:04.962121:++ Writing masked data
201112-23:05:04,979 nipype.interface INFO:
stderr 2020-11-12T23:05:04.979092:++ Output dataset ./uni_masked.nii.gz
201112-23:05:04,979 nipype.interface INFO:
stderr 2020-11-12T23:05:04.979606:++ CPU time = 0.000000 sec
201112-23:05:05,168 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-23:05:05,170 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks".
201112-23:05:05,177 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-23:05:05,635 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-23:05:05,636 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-23:05:05,643 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-23:05:05,876 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-23:05:05,878 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-23:05:05,885 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-23:05:06,139 nipype.interface INFO:
stderr 2020-11-12T23:05:06.139477:++ no -frac option: defaulting to -union
201112-23:05:06,140 nipype.interface INFO:
stderr 2020-11-12T23:05:06.139975:++ processing 1 input dataset(s), NN=2...
201112-23:05:06,140 nipype.interface INFO:
stderr 2020-11-12T23:05:06.140145:++ padding all datasets by 0 (for dilations)
201112-23:05:06,145 nipype.interface INFO:
stderr 2020-11-12T23:05:06.145242:++ frac 0 over 1 volumes gives min count 0
201112-23:05:06,145 nipype.interface INFO:
stderr 2020-11-12T23:05:06.145747:++ voxel limits: 0 clipped, 41103 survived, 98161 were zero
201112-23:05:06,145 nipype.interface INFO:
stderr 2020-11-12T23:05:06.145919:++ writing result sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-23:05:06,150 nipype.interface INFO:
stderr 2020-11-12T23:05:06.150437:++ Output dataset ./sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-23:05:06,337 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-23:05:06,339 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_functional_brain_mask".
201112-23:05:06,346 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:05:06,583 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask".
201112-23:05:06,585 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/functional_brain_mask_derivative_0".
201112-23:05:06,590 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-23:05:06,802 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-23:05:06,808 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-23:05:07,349 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201112-23:05:07,369 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.functional_brain_mask_derivative_0".
201112-23:05:07,371 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_extract_brain".
201112-23:05:07,379 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_motion_correct_mcflirt/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-23:05:07,630 nipype.interface INFO:
stderr 2020-11-12T23:05:07.630062:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:05:07,630 nipype.interface INFO:
stderr 2020-11-12T23:05:07.630530:++ Authored by: A cast of thousands
201112-23:05:10,137 nipype.interface INFO:
stderr 2020-11-12T23:05:10.137564:++ Output dataset ./sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-23:05:10,351 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-23:05:10,353 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize".
201112-23:05:10,359 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_extract_brain/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-23:05:12,305 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-23:05:12,306 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-23:05:12,312 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-23:05:13,104 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.GlobalSignal_mean".
201112-23:05:13,107 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-23:05:13,113 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-23:05:13,361 nipype.interface INFO:
stderr 2020-11-12T23:05:13.361483:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:05:13,361 nipype.interface INFO:
stderr 2020-11-12T23:05:13.361919:++ Authored by: KR Hammett & RW Cox
201112-23:05:13,817 nipype.interface INFO:
stderr 2020-11-12T23:05:13.817137:++ Output dataset ./sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-23:05:13,999 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.functional_mean".
201112-23:05:14,1 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-1/std_dev".
201112-23:05:14,7 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-1/std_dev/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-23:05:14,268 nipype.interface INFO:
stderr 2020-11-12T23:05:14.267924:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:05:14,268 nipype.interface INFO:
stderr 2020-11-12T23:05:14.268650:++ Authored by: KR Hammett & RW Cox
201112-23:05:14,692 nipype.interface INFO:
stderr 2020-11-12T23:05:14.692457:++ Output dataset ./sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-23:05:14,867 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev".
201112-23:05:14,868 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_functional_preprocessed".
201112-23:05:14,876 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:05:15,105 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed".
201112-23:05:15,107 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mask_normalize".
201112-23:05:15,113 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mask_normalize/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-23:05:16,72 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-23:05:16,73 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_functional_preprocessed_mask".
201112-23:05:16,80 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:05:16,314 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_preprocessed_mask".
201112-23:05:16,315 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean".
201112-23:05:16,321 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-23:05:16,575 nipype.interface INFO:
stderr 2020-11-12T23:05:16.575709:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:05:16,576 nipype.interface INFO:
stderr 2020-11-12T23:05:16.576171:++ Authored by: KR Hammett & RW Cox
201112-23:05:17,21 nipype.interface INFO:
stderr 2020-11-12T23:05:17.021263:++ Output dataset ./sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-23:05:17,211 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-23:05:17,213 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_mean_functional".
201112-23:05:17,221 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:05:17,455 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional".
201112-23:05:17,456 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/norm_motion_params".
201112-23:05:17,463 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-23:05:17,700 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-23:05:17,702 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_slice_time_corrected".
201112-23:05:17,711 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:05:17,942 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_slice_time_corrected".
201112-23:05:17,944 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_raw_functional".
201112-23:05:17,952 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:05:18,267 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_raw_functional".
201112-23:05:18,269 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_gather_0/_scan_matching_run-1/check_func_scan".
201112-23:05:18,299 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-23:05:18,533 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_gather_0.check_func_scan".
201112-23:05:18,544 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_dataflow_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_dataflow_0/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3".
201112-23:05:18,549 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-23:05:18,796 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_dataflow_0.check_for_s3".
201112-23:05:18,797 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_dataflow_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_dataflow_0/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3".
201112-23:05:18,801 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-23:05:19,66 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_dataflow_0.check_for_s3".
201112-23:05:19,68 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_tmpl" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl".
201112-23:05:19,73 nipype.workflow INFO:
[Node] Running "lap_tmpl" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 T_template0_maths.nii.gz Laplacian /ants_template/oasis/T_template0.nii.gz 1.5 1
201112-23:05:28,999 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_tmpl".
201112-23:05:29,1 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.mrg_tmpl" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/mrg_tmpl".
201112-23:05:29,7 nipype.workflow INFO:
[Node] Running "mrg_tmpl" ("nipype.interfaces.utility.base.Merge")
201112-23:05:29,242 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.mrg_tmpl".
201112-23:05:29,244 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_tmpl" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/res_tmpl".
201112-23:05:29,249 nipype.workflow INFO:
[Node] Running "res_tmpl" ("CPAC.utils.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command:
ResampleImageBySpacing 3 /ants_template/oasis/T_template0.nii.gz T_template0_resampled.nii.gz 4 4 4 1
201112-23:05:29,902 nipype.interface INFO:
stdout 2020-11-12T23:05:29.902822: spacing [1, 1, 1] dim 3
201112-23:05:29,903 nipype.interface INFO:
stdout 2020-11-12T23:05:29.903416: spacing2 [4, 4, 4]
201112-23:05:29,903 nipype.interface INFO:
stdout 2020-11-12T23:05:29.903629: smoothing by : 3 dir 0
201112-23:05:30,253 nipype.interface INFO:
stdout 2020-11-12T23:05:30.253033: smoothing by : 3 dir 1
201112-23:05:30,676 nipype.interface INFO:
stdout 2020-11-12T23:05:30.676328: smoothing by : 3 dir 2
201112-23:05:31,497 nipype.interface INFO:
stdout 2020-11-12T23:05:31.497868: out space [4, 4, 4]
201112-23:05:31,501 nipype.interface INFO:
stdout 2020-11-12T23:05:31.501093: output size [54, 64, 72] spc [4, 4, 4]
201112-23:05:31,769 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_tmpl".
201112-23:05:31,771 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_gather_0/check_for_s3".
201112-23:05:31,779 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-23:05:32,119 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_gather_0.check_for_s3".
201112-23:05:32,120 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_deoblique".
201112-23:05:32,290 nipype.workflow INFO:
[Node] Running "anat_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-181_ses-1_T1w.nii.gz
201112-23:05:32,545 nipype.interface INFO:
stderr 2020-11-12T23:05:32.545520:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:05:32,546 nipype.interface INFO:
stderr 2020-11-12T23:05:32.546073:++ Authored by: RW Cox
201112-23:05:32,552 nipype.interface INFO:
stderr 2020-11-12T23:05:32.552233:** AFNI converts NIFTI_datatype=4 (INT16) in file /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-181_ses-1_T1w.nii.gz to FLOAT32
201112-23:05:32,552 nipype.interface INFO:
stderr 2020-11-12T23:05:32.552567: Warnings of this type will be muted for this session.
201112-23:05:32,552 nipype.interface INFO:
stderr 2020-11-12T23:05:32.552567: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201112-23:05:32,553 nipype.interface INFO:
stderr 2020-11-12T23:05:32.553726:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-181_ses-1_T1w.nii.gz
201112-23:05:32,554 nipype.interface INFO:
stderr 2020-11-12T23:05:32.554541: + deoblique
201112-23:05:32,554 nipype.interface INFO:
stderr 2020-11-12T23:05:32.554761: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-181_ses-1_T1w.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-181_ses-1_T1w.nii.gz in NIFTI storage)
201112-23:05:36,76 nipype.interface INFO:
stderr 2020-11-12T23:05:36.076740:++ 3drefit processed 1 datasets
201112-23:05:36,290 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_deoblique".
201112-23:05:36,292 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient".
201112-23:05:36,298 nipype.workflow INFO:
[Node] Running "anat_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-1_T1w_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-181_ses-1_T1w.nii.gz
201112-23:05:40,403 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_reorient".
201112-23:05:40,404 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_skullstrip_0.skull_edge" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_skullstrip_0/skull_edge".
201112-23:05:40,410 nipype.workflow INFO:
[Node] Running "skull_edge" ("CPAC.utils.interfaces.function.Function")
201112-23:05:44,768 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_skullstrip_0.skull_edge".
201112-23:05:44,770 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_skullstrip_0.montage_skull.resample_o" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_skullstrip_0/montage_skull/resample_o".
201112-23:05:44,776 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201112-23:05:46,604 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_skullstrip_0.montage_skull.resample_o".
201112-23:05:46,606 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.truncate_images" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/truncate_images".
201112-23:05:46,614 nipype.workflow INFO:
[Node] Setting-up "_truncate_images0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/truncate_images/mapflow/_truncate_images0".
201112-23:05:46,620 nipype.workflow INFO:
[Node] Running "_truncate_images0" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-181_ses-1_T1w_resample_maths.nii.gz TruncateImageIntensity /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-181_ses-1_T1w_resample.nii.gz 0.01 0.999 256
201112-23:05:51,466 nipype.workflow INFO:
[Node] Finished "_truncate_images0".
201112-23:05:51,471 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.truncate_images".
201112-23:05:51,471 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.inu_n4" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4".
201112-23:05:51,479 nipype.workflow INFO:
[Node] Setting-up "_inu_n40" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40".
201112-23:05:51,484 nipype.workflow INFO:
[Node] Running "_inu_n40" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/truncate_images/mapflow/_truncate_images0/sub-181_ses-1_T1w_resample_maths.nii.gz --convergence [ 50x50x50x50, 1e-07 ] --output sub-181_ses-1_T1w_resample_maths_corrected.nii.gz --shrink-factor 4
201112-23:09:19,453 nipype.workflow INFO:
[Node] Finished "_inu_n40".
201112-23:09:19,459 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.inu_n4".
201112-23:09:19,460 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_target" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_target".
201112-23:09:19,467 nipype.workflow INFO:
[Node] Running "lap_target" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-181_ses-1_T1w_resample_maths_corrected_maths.nii.gz Laplacian /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-181_ses-1_T1w_resample_maths_corrected.nii.gz 1.5 1
201112-23:09:28,939 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_target".
201112-23:09:28,941 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.mrg_target" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/mrg_target".
201112-23:09:28,948 nipype.workflow INFO:
[Node] Running "mrg_target" ("nipype.interfaces.utility.base.Merge")
201112-23:09:29,182 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.mrg_target".
201112-23:09:29,184 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_target" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/res_target".
201112-23:09:29,190 nipype.workflow INFO:
[Node] Running "res_target" ("CPAC.utils.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command:
ResampleImageBySpacing 3 /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-181_ses-1_T1w_resample_maths_corrected.nii.gz sub-181_ses-1_T1w_resample_maths_corrected_resampled.nii.gz 4 4 4 1
201112-23:09:29,899 nipype.interface INFO:
stdout 2020-11-12T23:09:29.899790: spacing [0.999998, 1, 1] dim 3
201112-23:09:29,900 nipype.interface INFO:
stdout 2020-11-12T23:09:29.900362: spacing2 [4, 4, 4]
201112-23:09:29,900 nipype.interface INFO:
stdout 2020-11-12T23:09:29.900573: smoothing by : 3.00001 dir 0
201112-23:09:30,173 nipype.interface INFO:
stdout 2020-11-12T23:09:30.173421: smoothing by : 3 dir 1
201112-23:09:30,534 nipype.interface INFO:
stdout 2020-11-12T23:09:30.534126: smoothing by : 3 dir 2
201112-23:09:31,177 nipype.interface INFO:
stdout 2020-11-12T23:09:31.177902: out space [4, 4, 4]
201112-23:09:31,178 nipype.interface INFO:
stdout 2020-11-12T23:09:31.178349: output size [47, 64, 64] spc [4, 4, 4]
201112-23:09:31,452 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_target".
201112-23:09:31,454 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.init_aff" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/init_aff".
201112-23:09:31,463 nipype.workflow INFO:
[Node] Running "init_aff" ("CPAC.utils.interfaces.ants.AI"), a CommandLine Interface with command:
antsAI -c [10,0.000001,10] -d 3 -x /ants_template/oasis/T_template0_BrainCerebellumRegistrationMask.nii.gz -m Mattes[/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/res_tmpl/T_template0_resampled.nii.gz,/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/res_target/sub-181_ses-1_T1w_resample_maths_corrected_resampled.nii.gz,32,Regular,0.250000] -o initialization.mat -p 0 -s [15.000000,0.100000] -t Affine[0.100000] -v 1
201112-23:09:32,1 nipype.interface INFO:
stdout 2020-11-12T23:09:32.001504:Using the Mattes MI metric (number of bins = 32)
201112-23:09:39,741 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.init_aff".
201112-23:09:39,743 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.norm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/norm".
201112-23:09:39,758 nipype.workflow INFO:
[Node] Running "norm" ("CPAC.utils.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --masks /ants_template/oasis/T_template0_BrainCerebellumRegistrationMask.nii.gz --float 1 --initial-moving-transform [ /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ anat_to_template, anat_to_template_Warped.nii.gz ] --transform Rigid[ 0.1 ] --metric MI[ /ants_template/oasis/T_template0.nii.gz, /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-181_ses-1_T1w_resample_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --transform Affine[ 0.1 ] --metric MI[ /ants_template/oasis/T_template0.nii.gz, /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-181_ses-1_T1w_resample_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /ants_template/oasis/T_template0.nii.gz, /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-181_ses-1_T1w_resample_maths_corrected.nii.gz, 0.5, 4, None, 1 ] --metric CC[ /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl/T_template0_maths.nii.gz, /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_target/sub-181_ses-1_T1w_resample_maths_corrected_maths.nii.gz, 0.5, 4, None, 1 ] --convergence [ 50x10x0, 1e-09, 15 ] --smoothing-sigmas 2.0x1.0x0.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 -v --winsorize-image-intensities [ 0.025, 0.975 ] --write-composite-transform 0
201112-23:09:40,45 nipype.interface INFO:
stdout 2020-11-12T23:09:40.045309:All_Command_lines_OK
201112-23:09:40,45 nipype.interface INFO:
stdout 2020-11-12T23:09:40.045843:Using single precision for computations.
201112-23:09:40,161 nipype.interface INFO:
stdout 2020-11-12T23:09:40.161245:=============================================================================
201112-23:09:40,161 nipype.interface INFO:
stdout 2020-11-12T23:09:40.161653:The composite transform comprises the following transforms (in order):
201112-23:09:40,161 nipype.interface INFO:
stdout 2020-11-12T23:09:40.161846: 1. /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/init_aff/initialization.mat (type = AffineTransform)
201112-23:09:40,162 nipype.interface INFO:
stdout 2020-11-12T23:09:40.162047:=============================================================================
201112-23:09:40,162 nipype.interface INFO:
stdout 2020-11-12T23:09:40.162253: Reading mask(s).
201112-23:09:40,162 nipype.interface INFO:
stdout 2020-11-12T23:09:40.162424: Registration stage 0
201112-23:09:40,312 nipype.interface INFO:
stdout 2020-11-12T23:09:40.312614: Fixed mask = /ants_template/oasis/T_template0_BrainCerebellumRegistrationMask.nii.gz
201112-23:09:40,313 nipype.interface INFO:
stdout 2020-11-12T23:09:40.313093: number of levels = 4
201112-23:09:40,313 nipype.interface INFO:
stdout 2020-11-12T23:09:40.313294: number of levels = 4
201112-23:09:40,313 nipype.interface INFO:
stdout 2020-11-12T23:09:40.313485: number of levels = 3
201112-23:09:40,313 nipype.interface INFO:
stdout 2020-11-12T23:09:40.313659: fixed image: /ants_template/oasis/T_template0.nii.gz
201112-23:09:40,313 nipype.interface INFO:
stdout 2020-11-12T23:09:40.313802: moving image: /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-181_ses-1_T1w_resample_maths_corrected.nii.gz
201112-23:09:41,91 nipype.interface INFO:
stdout 2020-11-12T23:09:41.091485: fixed image: /ants_template/oasis/T_template0.nii.gz
201112-23:09:41,91 nipype.interface INFO:
stdout 2020-11-12T23:09:41.091895: moving image: /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-181_ses-1_T1w_resample_maths_corrected.nii.gz
201112-23:09:41,855 nipype.interface INFO:
stdout 2020-11-12T23:09:41.855491: fixed image: /ants_template/oasis/T_template0.nii.gz
201112-23:09:41,855 nipype.interface INFO:
stdout 2020-11-12T23:09:41.855948: moving image: /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-181_ses-1_T1w_resample_maths_corrected.nii.gz
201112-23:09:42,626 nipype.interface INFO:
stdout 2020-11-12T23:09:42.626365: fixed image: /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl/T_template0_maths.nii.gz
201112-23:09:42,626 nipype.interface INFO:
stdout 2020-11-12T23:09:42.626724: moving image: /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_target/sub-181_ses-1_T1w_resample_maths_corrected_maths.nii.gz
201112-23:09:43,510 nipype.interface INFO:
stdout 2020-11-12T23:09:43.510269:Dimension = 3
201112-23:09:43,510 nipype.interface INFO:
stdout 2020-11-12T23:09:43.510631:Number of stages = 3
201112-23:09:43,510 nipype.interface INFO:
stdout 2020-11-12T23:09:43.510780:Use Histogram Matching true
201112-23:09:43,510 nipype.interface INFO:
stdout 2020-11-12T23:09:43.510918:Winsorize image intensities true
201112-23:09:43,511 nipype.interface INFO:
stdout 2020-11-12T23:09:43.511078:Lower quantile = 0.025
201112-23:09:43,511 nipype.interface INFO:
stdout 2020-11-12T23:09:43.511219:Upper quantile = 0.975
201112-23:09:43,511 nipype.interface INFO:
stdout 2020-11-12T23:09:43.511355:Stage 1 State
201112-23:09:43,511 nipype.interface INFO:
stdout 2020-11-12T23:09:43.511489: Image metric = Mattes
201112-23:09:43,511 nipype.interface INFO:
stdout 2020-11-12T23:09:43.511659: Fixed image = Image (0x555555c46520)
201112-23:09:43,511 nipype.interface INFO:
stdout 2020-11-12T23:09:43.511659: RTTI typeinfo: itk::Image<float, 3u>
201112-23:09:43,511 nipype.interface INFO:
stdout 2020-11-12T23:09:43.511878: Reference Count: 2
201112-23:09:43,512 nipype.interface INFO:
stdout 2020-11-12T23:09:43.512018: Modified Time: 1602
201112-23:09:43,512 nipype.interface INFO:
stdout 2020-11-12T23:09:43.512147: Debug: Off
201112-23:09:43,512 nipype.interface INFO:
stdout 2020-11-12T23:09:43.512147: Object Name:
201112-23:09:43,512 nipype.interface INFO:
stdout 2020-11-12T23:09:43.512370: Observers:
201112-23:09:43,512 nipype.interface INFO:
stdout 2020-11-12T23:09:43.512370: none
201112-23:09:43,512 nipype.interface INFO:
stdout 2020-11-12T23:09:43.512370: Source: (none)
201112-23:09:43,512 nipype.interface INFO:
stdout 2020-11-12T23:09:43.512370: Source output name: (none)
201112-23:09:43,512 nipype.interface INFO:
stdout 2020-11-12T23:09:43.512370: Release Data: Off
201112-23:09:43,512 nipype.interface INFO:
stdout 2020-11-12T23:09:43.512370: Data Released: False
201112-23:09:43,512 nipype.interface INFO:
stdout 2020-11-12T23:09:43.512370: Global Release Data: Off
201112-23:09:43,513 nipype.interface INFO:
stdout 2020-11-12T23:09:43.512370: PipelineMTime: 0
201112-23:09:43,513 nipype.interface INFO:
stdout 2020-11-12T23:09:43.513108: UpdateMTime: 1435
201112-23:09:43,513 nipype.interface INFO:
stdout 2020-11-12T23:09:43.513250: RealTimeStamp: 0 seconds
201112-23:09:43,513 nipype.interface INFO:
stdout 2020-11-12T23:09:43.513401: LargestPossibleRegion:
201112-23:09:43,513 nipype.interface INFO:
stdout 2020-11-12T23:09:43.513544: Dimension: 3
201112-23:09:43,513 nipype.interface INFO:
stdout 2020-11-12T23:09:43.513677: Index: [0, 0, 0]
201112-23:09:43,513 nipype.interface INFO:
stdout 2020-11-12T23:09:43.513815: Size: [216, 256, 291]
201112-23:09:43,513 nipype.interface INFO:
stdout 2020-11-12T23:09:43.513952: BufferedRegion:
201112-23:09:43,514 nipype.interface INFO:
stdout 2020-11-12T23:09:43.514088: Dimension: 3
201112-23:09:43,514 nipype.interface INFO:
stdout 2020-11-12T23:09:43.514218: Index: [0, 0, 0]
201112-23:09:43,514 nipype.interface INFO:
stdout 2020-11-12T23:09:43.514349: Size: [216, 256, 291]
201112-23:09:43,514 nipype.interface INFO:
stdout 2020-11-12T23:09:43.514479: RequestedRegion:
201112-23:09:43,514 nipype.interface INFO:
stdout 2020-11-12T23:09:43.514608: Dimension: 3
201112-23:09:43,514 nipype.interface INFO:
stdout 2020-11-12T23:09:43.514742: Index: [0, 0, 0]
201112-23:09:43,514 nipype.interface INFO:
stdout 2020-11-12T23:09:43.514875: Size: [216, 256, 291]
201112-23:09:43,515 nipype.interface INFO:
stdout 2020-11-12T23:09:43.515023: Spacing: [1, 1, 1]
201112-23:09:43,515 nipype.interface INFO:
stdout 2020-11-12T23:09:43.515160: Origin: [0, 293, 0]
201112-23:09:43,515 nipype.interface INFO:
stdout 2020-11-12T23:09:43.515291: Direction:
201112-23:09:43,515 nipype.interface INFO:
stdout 2020-11-12T23:09:43.515429:1 0 0
201112-23:09:43,515 nipype.interface INFO:
stdout 2020-11-12T23:09:43.515429:0 -0 -1
201112-23:09:43,515 nipype.interface INFO:
stdout 2020-11-12T23:09:43.515429:0 -1 -0
201112-23:09:43,515 nipype.interface INFO:
stdout 2020-11-12T23:09:43.515429:
201112-23:09:43,515 nipype.interface INFO:
stdout 2020-11-12T23:09:43.515807: IndexToPointMatrix:
201112-23:09:43,515 nipype.interface INFO:
stdout 2020-11-12T23:09:43.515945:1 0 0
201112-23:09:43,516 nipype.interface INFO:
stdout 2020-11-12T23:09:43.515945:0 0 -1
201112-23:09:43,516 nipype.interface INFO:
stdout 2020-11-12T23:09:43.515945:0 -1 0
201112-23:09:43,516 nipype.interface INFO:
stdout 2020-11-12T23:09:43.515945:
201112-23:09:43,516 nipype.interface INFO:
stdout 2020-11-12T23:09:43.516335: PointToIndexMatrix:
201112-23:09:43,516 nipype.interface INFO:
stdout 2020-11-12T23:09:43.516472:1 0 0
201112-23:09:43,516 nipype.interface INFO:
stdout 2020-11-12T23:09:43.516472:0 0 -1
201112-23:09:43,516 nipype.interface INFO:
stdout 2020-11-12T23:09:43.516472:0 -1 0
201112-23:09:43,516 nipype.interface INFO:
stdout 2020-11-12T23:09:43.516472:
201112-23:09:43,516 nipype.interface INFO:
stdout 2020-11-12T23:09:43.516846: Inverse Direction:
201112-23:09:43,517 nipype.interface INFO:
stdout 2020-11-12T23:09:43.517012:1 0 0
201112-23:09:43,517 nipype.interface INFO:
stdout 2020-11-12T23:09:43.517012:0 0 -1
201112-23:09:43,517 nipype.interface INFO:
stdout 2020-11-12T23:09:43.517012:0 -1 0
201112-23:09:43,517 nipype.interface INFO:
stdout 2020-11-12T23:09:43.517012:
201112-23:09:43,517 nipype.interface INFO:
stdout 2020-11-12T23:09:43.517421: PixelContainer:
201112-23:09:43,517 nipype.interface INFO:
stdout 2020-11-12T23:09:43.517564: ImportImageContainer (0x555555c355d0)
201112-23:09:43,517 nipype.interface INFO:
stdout 2020-11-12T23:09:43.517564: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201112-23:09:43,517 nipype.interface INFO:
stdout 2020-11-12T23:09:43.517779: Reference Count: 1
201112-23:09:43,517 nipype.interface INFO:
stdout 2020-11-12T23:09:43.517908: Modified Time: 1432
201112-23:09:43,518 nipype.interface INFO:
stdout 2020-11-12T23:09:43.518066: Debug: Off
201112-23:09:43,518 nipype.interface INFO:
stdout 2020-11-12T23:09:43.518066: Object Name:
201112-23:09:43,518 nipype.interface INFO:
stdout 2020-11-12T23:09:43.518313: Observers:
201112-23:09:43,518 nipype.interface INFO:
stdout 2020-11-12T23:09:43.518313: none
201112-23:09:43,518 nipype.interface INFO:
stdout 2020-11-12T23:09:43.518313: Pointer: 0x2aaab48b5010
201112-23:09:43,518 nipype.interface INFO:
stdout 2020-11-12T23:09:43.518608: Container manages memory: true
201112-23:09:43,518 nipype.interface INFO:
stdout 2020-11-12T23:09:43.518737: Size: 16091136
201112-23:09:43,518 nipype.interface INFO:
stdout 2020-11-12T23:09:43.518870: Capacity: 16091136
201112-23:09:43,521 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:
201112-23:09:43,521 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Moving image = Image (0x555555c43360)
201112-23:09:43,521 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: RTTI typeinfo: itk::Image<float, 3u>
201112-23:09:43,521 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Reference Count: 2
201112-23:09:43,521 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Modified Time: 1603
201112-23:09:43,521 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Debug: Off
201112-23:09:43,521 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Object Name:
201112-23:09:43,522 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Observers:
201112-23:09:43,522 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: none
201112-23:09:43,522 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Source: (none)
201112-23:09:43,522 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Source output name: (none)
201112-23:09:43,522 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Release Data: Off
201112-23:09:43,522 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Data Released: False
201112-23:09:43,522 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Global Release Data: Off
201112-23:09:43,522 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: PipelineMTime: 0
201112-23:09:43,522 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: UpdateMTime: 1600
201112-23:09:43,522 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: RealTimeStamp: 0 seconds
201112-23:09:43,522 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: LargestPossibleRegion:
201112-23:09:43,522 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Dimension: 3
201112-23:09:43,522 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Index: [0, 0, 0]
201112-23:09:43,523 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Size: [192, 256, 256]
201112-23:09:43,523 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: BufferedRegion:
201112-23:09:43,523 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Dimension: 3
201112-23:09:43,523 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Index: [0, 0, 0]
201112-23:09:43,523 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Size: [192, 256, 256]
201112-23:09:43,523 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: RequestedRegion:
201112-23:09:43,523 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Dimension: 3
201112-23:09:43,523 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Index: [0, 0, 0]
201112-23:09:43,523 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Size: [192, 256, 256]
201112-23:09:43,523 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Spacing: [0.999998, 1, 1]
201112-23:09:43,523 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Origin: [-90.0988, 111.591, -141.286]
201112-23:09:43,523 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Direction:
201112-23:09:43,524 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:1 0 0
201112-23:09:43,524 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:0 -1 0
201112-23:09:43,524 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:0 0 1
201112-23:09:43,524 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:
201112-23:09:43,524 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: IndexToPointMatrix:
201112-23:09:43,524 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:0.999998 0 0
201112-23:09:43,524 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:0 -1 0
201112-23:09:43,524 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:0 0 1
201112-23:09:43,524 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:
201112-23:09:43,524 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: PointToIndexMatrix:
201112-23:09:43,524 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:1 0 0
201112-23:09:43,524 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:0 -1 0
201112-23:09:43,524 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:0 0 1
201112-23:09:43,525 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:
201112-23:09:43,525 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Inverse Direction:
201112-23:09:43,525 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:1 0 0
201112-23:09:43,525 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:0 -1 0
201112-23:09:43,525 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:0 0 1
201112-23:09:43,525 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:
201112-23:09:43,525 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: PixelContainer:
201112-23:09:43,525 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: ImportImageContainer (0x555555c36680)
201112-23:09:43,525 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201112-23:09:43,525 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Reference Count: 1
201112-23:09:43,525 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Modified Time: 1597
201112-23:09:43,525 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Debug: Off
201112-23:09:43,525 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Object Name:
201112-23:09:43,526 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Observers:
201112-23:09:43,526 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: none
201112-23:09:43,526 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Pointer: 0x2aaab8618010
201112-23:09:43,526 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Container manages memory: true
201112-23:09:43,526 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Size: 12582912
201112-23:09:43,526 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Capacity: 12582912
201112-23:09:43,526 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:
201112-23:09:43,526 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Weighting = 1
201112-23:09:43,526 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Sampling strategy = regular
201112-23:09:43,526 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Number of bins = 32
201112-23:09:43,526 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Radius = 4
201112-23:09:43,526 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Sampling percentage = 0.25
201112-23:09:43,528 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Transform = Rigid
201112-23:09:43,528 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Gradient step = 0.1
201112-23:09:43,528 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Update field sigma (voxel space) = 0
201112-23:09:43,528 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Total field sigma (voxel space) = 0
201112-23:09:43,528 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Update field time sigma = 0
201112-23:09:43,528 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Total field time sigma = 0
201112-23:09:43,528 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Number of time indices = 0
201112-23:09:43,528 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Number of time point samples = 0
201112-23:09:43,528 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:Stage 2 State
201112-23:09:43,529 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Image metric = Mattes
201112-23:09:43,529 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Fixed image = Image (0x555555c45e20)
201112-23:09:43,529 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: RTTI typeinfo: itk::Image<float, 3u>
201112-23:09:43,529 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Reference Count: 2
201112-23:09:43,529 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Modified Time: 1932
201112-23:09:43,529 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Debug: Off
201112-23:09:43,529 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Object Name:
201112-23:09:43,530 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Observers:
201112-23:09:43,530 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: none
201112-23:09:43,530 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Source: (none)
201112-23:09:43,530 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Source output name: (none)
201112-23:09:43,530 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Release Data: Off
201112-23:09:43,530 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Data Released: False
201112-23:09:43,530 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Global Release Data: Off
201112-23:09:43,530 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: PipelineMTime: 0
201112-23:09:43,530 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: UpdateMTime: 1765
201112-23:09:43,530 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: RealTimeStamp: 0 seconds
201112-23:09:43,530 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: LargestPossibleRegion:
201112-23:09:43,530 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Dimension: 3
201112-23:09:43,530 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Index: [0, 0, 0]
201112-23:09:43,531 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Size: [216, 256, 291]
201112-23:09:43,531 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: BufferedRegion:
201112-23:09:43,531 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Dimension: 3
201112-23:09:43,531 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Index: [0, 0, 0]
201112-23:09:43,531 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Size: [216, 256, 291]
201112-23:09:43,531 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: RequestedRegion:
201112-23:09:43,531 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Dimension: 3
201112-23:09:43,531 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Index: [0, 0, 0]
201112-23:09:43,531 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Size: [216, 256, 291]
201112-23:09:43,531 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Spacing: [1, 1, 1]
201112-23:09:43,531 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Origin: [0, 293, 0]
201112-23:09:43,531 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Direction:
201112-23:09:43,532 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:1 0 0
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stdout 2020-11-12T23:09:43.520940:0 -0 -1
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stdout 2020-11-12T23:09:43.520940:0 -1 -0
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stdout 2020-11-12T23:09:43.520940:
201112-23:09:43,532 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: IndexToPointMatrix:
201112-23:09:43,532 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:1 0 0
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stdout 2020-11-12T23:09:43.520940:0 -1 0
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stdout 2020-11-12T23:09:43.520940:
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stdout 2020-11-12T23:09:43.520940: PointToIndexMatrix:
201112-23:09:43,532 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:1 0 0
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stdout 2020-11-12T23:09:43.520940:0 0 -1
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stdout 2020-11-12T23:09:43.520940:0 -1 0
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stdout 2020-11-12T23:09:43.520940:
201112-23:09:43,533 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Inverse Direction:
201112-23:09:43,533 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:1 0 0
201112-23:09:43,533 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:0 0 -1
201112-23:09:43,533 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:0 -1 0
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stdout 2020-11-12T23:09:43.520940:
201112-23:09:43,533 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: PixelContainer:
201112-23:09:43,533 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: ImportImageContainer (0x555555c36800)
201112-23:09:43,533 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201112-23:09:43,533 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Reference Count: 1
201112-23:09:43,533 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Modified Time: 1762
201112-23:09:43,533 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Debug: Off
201112-23:09:43,534 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Object Name:
201112-23:09:43,534 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Observers:
201112-23:09:43,534 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: none
201112-23:09:43,534 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Pointer: 0x2aaabb619010
201112-23:09:43,534 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Container manages memory: true
201112-23:09:43,534 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Size: 16091136
201112-23:09:43,534 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Capacity: 16091136
201112-23:09:43,534 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:
201112-23:09:43,534 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Moving image = Image (0x555555c44e80)
201112-23:09:43,534 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: RTTI typeinfo: itk::Image<float, 3u>
201112-23:09:43,534 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Reference Count: 2
201112-23:09:43,534 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Modified Time: 1933
201112-23:09:43,535 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Debug: Off
201112-23:09:43,535 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Object Name:
201112-23:09:43,535 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Observers:
201112-23:09:43,535 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: none
201112-23:09:43,535 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Source: (none)
201112-23:09:43,535 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Source output name: (none)
201112-23:09:43,535 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Release Data: Off
201112-23:09:43,535 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Data Released: False
201112-23:09:43,535 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Global Release Data: Off
201112-23:09:43,535 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: PipelineMTime: 0
201112-23:09:43,535 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: UpdateMTime: 1930
201112-23:09:43,535 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: RealTimeStamp: 0 seconds
201112-23:09:43,535 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: LargestPossibleRegion:
201112-23:09:43,536 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Dimension: 3
201112-23:09:43,536 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Index: [0, 0, 0]
201112-23:09:43,536 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Size: [192, 256, 256]
201112-23:09:43,536 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: BufferedRegion:
201112-23:09:43,536 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Dimension: 3
201112-23:09:43,536 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Index: [0, 0, 0]
201112-23:09:43,536 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Size: [192, 256, 256]
201112-23:09:43,536 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: RequestedRegion:
201112-23:09:43,536 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Dimension: 3
201112-23:09:43,536 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Index: [0, 0, 0]
201112-23:09:43,536 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Size: [192, 256, 256]
201112-23:09:43,536 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Spacing: [0.999998, 1, 1]
201112-23:09:43,546 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Origin: [-90.0988, 111.591, -141.286]
201112-23:09:43,547 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Direction:
201112-23:09:43,547 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:1 0 0
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stdout 2020-11-12T23:09:43.520940:0 -1 0
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stdout 2020-11-12T23:09:43.520940:
201112-23:09:43,547 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: IndexToPointMatrix:
201112-23:09:43,547 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:0.999998 0 0
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stdout 2020-11-12T23:09:43.520940:0 -1 0
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stdout 2020-11-12T23:09:43.520940:0 0 1
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stdout 2020-11-12T23:09:43.520940:
201112-23:09:43,547 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: PointToIndexMatrix:
201112-23:09:43,547 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:1 0 0
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stdout 2020-11-12T23:09:43.520940:0 -1 0
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stdout 2020-11-12T23:09:43.520940:0 0 1
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stdout 2020-11-12T23:09:43.520940:
201112-23:09:43,548 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Inverse Direction:
201112-23:09:43,548 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:1 0 0
201112-23:09:43,548 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:0 -1 0
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stdout 2020-11-12T23:09:43.520940:0 0 1
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stdout 2020-11-12T23:09:43.520940:
201112-23:09:43,548 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: PixelContainer:
201112-23:09:43,548 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: ImportImageContainer (0x555555c30560)
201112-23:09:43,548 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201112-23:09:43,548 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Reference Count: 1
201112-23:09:43,549 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Modified Time: 1927
201112-23:09:43,549 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Debug: Off
201112-23:09:43,549 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Object Name:
201112-23:09:43,549 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Observers:
201112-23:09:43,549 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: none
201112-23:09:43,549 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Pointer: 0x2aaabf37c010
201112-23:09:43,549 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Container manages memory: true
201112-23:09:43,549 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Size: 12582912
201112-23:09:43,549 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Capacity: 12582912
201112-23:09:43,549 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940:
201112-23:09:43,549 nipype.interface INFO:
stdout 2020-11-12T23:09:43.520940: Weighting = 1
201112-23:09:43,550 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Sampling strategy = regular
201112-23:09:43,550 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Number of bins = 32
201112-23:09:43,550 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Radius = 4
201112-23:09:43,550 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Sampling percentage = 0.25
201112-23:09:43,550 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Transform = Affine
201112-23:09:43,550 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Gradient step = 0.1
201112-23:09:43,550 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Update field sigma (voxel space) = 0
201112-23:09:43,550 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Total field sigma (voxel space) = 0
201112-23:09:43,550 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Update field time sigma = 0
201112-23:09:43,550 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Total field time sigma = 0
201112-23:09:43,550 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Number of time indices = 0
201112-23:09:43,550 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Number of time point samples = 0
201112-23:09:43,551 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899:Stage 3 State
201112-23:09:43,551 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Image metric = CC
201112-23:09:43,551 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Fixed image = Image (0x555555c3f520)
201112-23:09:43,551 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: RTTI typeinfo: itk::Image<float, 3u>
201112-23:09:43,551 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Reference Count: 2
201112-23:09:43,551 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Modified Time: 2262
201112-23:09:43,551 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Debug: Off
201112-23:09:43,551 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Object Name:
201112-23:09:43,551 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Observers:
201112-23:09:43,551 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: none
201112-23:09:43,551 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Source: (none)
201112-23:09:43,551 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Source output name: (none)
201112-23:09:43,551 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Release Data: Off
201112-23:09:43,552 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Data Released: False
201112-23:09:43,552 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Global Release Data: Off
201112-23:09:43,552 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: PipelineMTime: 0
201112-23:09:43,552 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: UpdateMTime: 2095
201112-23:09:43,552 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: RealTimeStamp: 0 seconds
201112-23:09:43,552 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: LargestPossibleRegion:
201112-23:09:43,552 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Dimension: 3
201112-23:09:43,552 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Index: [0, 0, 0]
201112-23:09:43,552 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Size: [216, 256, 291]
201112-23:09:43,552 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: BufferedRegion:
201112-23:09:43,552 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Dimension: 3
201112-23:09:43,552 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Index: [0, 0, 0]
201112-23:09:43,552 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Size: [216, 256, 291]
201112-23:09:43,553 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: RequestedRegion:
201112-23:09:43,553 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Dimension: 3
201112-23:09:43,553 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Index: [0, 0, 0]
201112-23:09:43,553 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Size: [216, 256, 291]
201112-23:09:43,553 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Spacing: [1, 1, 1]
201112-23:09:43,553 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Origin: [0, 293, 0]
201112-23:09:43,553 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Direction:
201112-23:09:43,553 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899:1 0 0
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stdout 2020-11-12T23:09:43.549899: IndexToPointMatrix:
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stdout 2020-11-12T23:09:43.549899:1 0 0
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stdout 2020-11-12T23:09:43.549899:
201112-23:09:43,554 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: PointToIndexMatrix:
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stdout 2020-11-12T23:09:43.549899:1 0 0
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stdout 2020-11-12T23:09:43.549899:
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stdout 2020-11-12T23:09:43.549899: Inverse Direction:
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stdout 2020-11-12T23:09:43.549899:1 0 0
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stdout 2020-11-12T23:09:43.549899:
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stdout 2020-11-12T23:09:43.549899: PixelContainer:
201112-23:09:43,555 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: ImportImageContainer (0x555555c45d80)
201112-23:09:43,555 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201112-23:09:43,555 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Reference Count: 1
201112-23:09:43,555 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Modified Time: 2092
201112-23:09:43,555 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Debug: Off
201112-23:09:43,555 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Object Name:
201112-23:09:43,555 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Observers:
201112-23:09:43,555 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: none
201112-23:09:43,555 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Pointer: 0x2aaac237d010
201112-23:09:43,555 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Container manages memory: true
201112-23:09:43,555 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Size: 16091136
201112-23:09:43,556 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Capacity: 16091136
201112-23:09:43,556 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899:
201112-23:09:43,556 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Moving image = Image (0x555555c3f8d0)
201112-23:09:43,556 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: RTTI typeinfo: itk::Image<float, 3u>
201112-23:09:43,556 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Reference Count: 2
201112-23:09:43,556 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Modified Time: 2263
201112-23:09:43,556 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Debug: Off
201112-23:09:43,556 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Object Name:
201112-23:09:43,556 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Observers:
201112-23:09:43,556 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: none
201112-23:09:43,556 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Source: (none)
201112-23:09:43,556 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Source output name: (none)
201112-23:09:43,567 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Release Data: Off
201112-23:09:43,567 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Data Released: False
201112-23:09:43,567 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Global Release Data: Off
201112-23:09:43,567 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: PipelineMTime: 0
201112-23:09:43,567 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: UpdateMTime: 2260
201112-23:09:43,567 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: RealTimeStamp: 0 seconds
201112-23:09:43,567 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: LargestPossibleRegion:
201112-23:09:43,567 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Dimension: 3
201112-23:09:43,567 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Index: [0, 0, 0]
201112-23:09:43,567 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Size: [192, 256, 256]
201112-23:09:43,567 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: BufferedRegion:
201112-23:09:43,567 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Dimension: 3
201112-23:09:43,567 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Index: [0, 0, 0]
201112-23:09:43,568 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Size: [192, 256, 256]
201112-23:09:43,568 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: RequestedRegion:
201112-23:09:43,568 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Dimension: 3
201112-23:09:43,568 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Index: [0, 0, 0]
201112-23:09:43,568 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Size: [192, 256, 256]
201112-23:09:43,568 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Spacing: [0.999998, 1, 1]
201112-23:09:43,568 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Origin: [-90.0988, 111.591, -141.286]
201112-23:09:43,568 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Direction:
201112-23:09:43,568 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899:1 0 0
201112-23:09:43,568 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899:0 -1 0
201112-23:09:43,568 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899:0 0 1
201112-23:09:43,568 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899:
201112-23:09:43,568 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: IndexToPointMatrix:
201112-23:09:43,569 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899:0.999998 0 0
201112-23:09:43,569 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899:0 -1 0
201112-23:09:43,569 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899:0 0 1
201112-23:09:43,569 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899:
201112-23:09:43,569 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: PointToIndexMatrix:
201112-23:09:43,569 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899:1 0 0
201112-23:09:43,569 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899:0 -1 0
201112-23:09:43,569 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899:0 0 1
201112-23:09:43,569 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899:
201112-23:09:43,569 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Inverse Direction:
201112-23:09:43,569 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899:1 0 0
201112-23:09:43,569 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899:0 -1 0
201112-23:09:43,570 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899:0 0 1
201112-23:09:43,570 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899:
201112-23:09:43,570 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: PixelContainer:
201112-23:09:43,570 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: ImportImageContainer (0x555555c0f6f0)
201112-23:09:43,570 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201112-23:09:43,570 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Reference Count: 1
201112-23:09:43,570 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Modified Time: 2257
201112-23:09:43,570 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Debug: Off
201112-23:09:43,570 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Object Name:
201112-23:09:43,570 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Observers:
201112-23:09:43,570 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: none
201112-23:09:43,570 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Pointer: 0x2aaac60e0010
201112-23:09:43,570 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Container manages memory: true
201112-23:09:43,571 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Size: 12582912
201112-23:09:43,571 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Capacity: 12582912
201112-23:09:43,571 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899:
201112-23:09:43,571 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Weighting = 0.5
201112-23:09:43,571 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Sampling strategy = none
201112-23:09:43,571 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Number of bins = 32
201112-23:09:43,571 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Radius = 4
201112-23:09:43,571 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Sampling percentage = 1
201112-23:09:43,571 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Transform = SyN
201112-23:09:43,571 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Gradient step = 0.1
201112-23:09:43,571 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Update field sigma (voxel space) = 3
201112-23:09:43,572 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Total field sigma (voxel space) = 0
201112-23:09:43,572 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Update field time sigma = 0
201112-23:09:43,572 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Total field time sigma = 0
201112-23:09:43,572 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Number of time indices = 0
201112-23:09:43,572 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: Number of time point samples = 0
201112-23:09:43,572 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899:Registration using 3 total stages.
201112-23:09:43,572 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899:
201112-23:09:43,572 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899:Stage 0
201112-23:09:43,572 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: iterations = 1000x500x250x100
201112-23:09:43,572 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: convergence threshold = 1e-08
201112-23:09:43,573 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: convergence window size = 10
201112-23:09:43,573 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: number of levels = 4
201112-23:09:43,573 nipype.interface INFO:
stdout 2020-11-12T23:09:43.549899: using the Mattes MI metric (number of bins = 32, weight = 1)
201112-23:09:46,371 nipype.interface INFO:
stdout 2020-11-12T23:09:46.371618: preprocessing: winsorizing the image intensities
201112-23:09:46,371 nipype.interface INFO:
stdout 2020-11-12T23:09:46.371618: preprocessing: histogram matching the images
201112-23:09:46,372 nipype.interface INFO:
stdout 2020-11-12T23:09:46.372169: Shrink factors (level 1 out of 4): [8, 8, 8]
201112-23:09:46,372 nipype.interface INFO:
stdout 2020-11-12T23:09:46.372325: Shrink factors (level 2 out of 4): [4, 4, 4]
201112-23:09:46,372 nipype.interface INFO:
stdout 2020-11-12T23:09:46.372483: Shrink factors (level 3 out of 4): [2, 2, 2]
201112-23:09:46,372 nipype.interface INFO:
stdout 2020-11-12T23:09:46.372618: Shrink factors (level 4 out of 4): [1, 1, 1]
201112-23:09:46,372 nipype.interface INFO:
stdout 2020-11-12T23:09:46.372810: smoothing sigmas per level: [4, 2, 1, 0]
201112-23:09:46,372 nipype.interface INFO:
stdout 2020-11-12T23:09:46.372961: regular sampling (percentage = 0.25)
201112-23:09:46,382 nipype.interface INFO:
stdout 2020-11-12T23:09:46.382868:
201112-23:09:46,383 nipype.interface INFO:
stdout 2020-11-12T23:09:46.383226:*** Running Euler3DTransform registration ***
201112-23:09:46,383 nipype.interface INFO:
stdout 2020-11-12T23:09:46.383373:
201112-23:09:58,673 nipype.interface INFO:
stdout 2020-11-12T23:09:58.672995:DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201112-23:09:58,673 nipype.interface INFO:
stdout 2020-11-12T23:09:58.673434: 2DIAGNOSTIC, 1, -9.488844275475e-01, inf, 1.2294e+01, 1.2294e+01,
201112-23:09:58,682 nipype.interface INFO:
stdout 2020-11-12T23:09:58.682465: 2DIAGNOSTIC, 2, -9.498419761658e-01, inf, 1.2302e+01, 8.7931e-03,
201112-23:09:58,691 nipype.interface INFO:
stdout 2020-11-12T23:09:58.691852: 2DIAGNOSTIC, 3, -9.506260156631e-01, inf, 1.2312e+01, 9.0420e-03,
201112-23:09:58,701 nipype.interface INFO:
stdout 2020-11-12T23:09:58.701038: 2DIAGNOSTIC, 4, -9.511348605156e-01, inf, 1.2320e+01, 8.7960e-03,
201112-23:09:58,710 nipype.interface INFO:
stdout 2020-11-12T23:09:58.710127: 2DIAGNOSTIC, 5, -9.520738124847e-01, inf, 1.2329e+01, 8.7290e-03,
201112-23:09:58,720 nipype.interface INFO:
stdout 2020-11-12T23:09:58.720884: 2DIAGNOSTIC, 6, -9.535148143768e-01, inf, 1.2339e+01, 1.0415e-02,
201112-23:09:58,733 nipype.interface INFO:
stdout 2020-11-12T23:09:58.733382: 2DIAGNOSTIC, 7, -9.539559483528e-01, inf, 1.2352e+01, 1.2095e-02,
201112-23:09:58,742 nipype.interface INFO:
stdout 2020-11-12T23:09:58.742533: 2DIAGNOSTIC, 8, -9.543651938438e-01, inf, 1.2360e+01, 8.7409e-03,
201112-23:09:58,751 nipype.interface INFO:
stdout 2020-11-12T23:09:58.751618: 2DIAGNOSTIC, 9, -9.548094272614e-01, inf, 1.2369e+01, 8.7481e-03,
201112-23:09:58,762 nipype.interface INFO:
stdout 2020-11-12T23:09:58.762673: 2DIAGNOSTIC, 10, -9.565138220787e-01, 4.850139375776e-04, 1.2380e+01, 1.0761e-02,
201112-23:09:58,782 nipype.interface INFO:
stdout 2020-11-12T23:09:58.782319: 2DIAGNOSTIC, 11, -9.597947597504e-01, 5.129739292897e-04, 1.2399e+01, 1.9327e-02,
201112-23:09:58,791 nipype.interface INFO:
stdout 2020-11-12T23:09:58.791391: 2DIAGNOSTIC, 12, -9.601474404335e-01, 5.210314993747e-04, 1.2408e+01, 8.7399e-03,
201112-23:09:58,800 nipype.interface INFO:
stdout 2020-11-12T23:09:58.800345: 2DIAGNOSTIC, 13, -9.617536067963e-01, 5.372887244448e-04, 1.2417e+01, 8.6870e-03,
201112-23:09:58,809 nipype.interface INFO:
stdout 2020-11-12T23:09:58.809328: 2DIAGNOSTIC, 14, -9.628985524178e-01, 5.376384360716e-04, 1.2425e+01, 8.7280e-03,
201112-23:09:58,818 nipype.interface INFO:
stdout 2020-11-12T23:09:58.818589: 2DIAGNOSTIC, 15, -9.632793664932e-01, 5.136673571542e-04, 1.2434e+01, 8.7550e-03,
201112-23:09:58,829 nipype.interface INFO:
stdout 2020-11-12T23:09:58.829091: 2DIAGNOSTIC, 16, -9.633175730705e-01, 4.726723418571e-04, 1.2444e+01, 1.0277e-02,
201112-23:09:58,839 nipype.interface INFO:
stdout 2020-11-12T23:09:58.839712: 2DIAGNOSTIC, 17, -9.633477926254e-01, 4.017977043986e-04, 1.2455e+01, 1.0389e-02,
201112-23:09:58,848 nipype.interface INFO:
stdout 2020-11-12T23:09:58.848594: 2DIAGNOSTIC, 18, -9.634014964104e-01, 3.101275651716e-04, 1.2463e+01, 8.6498e-03,
201112-23:09:58,857 nipype.interface INFO:
stdout 2020-11-12T23:09:58.857584: 2DIAGNOSTIC, 19, -9.634225368500e-01, 2.063935389742e-04, 1.2472e+01, 8.7581e-03,
201112-23:09:58,868 nipype.interface INFO:
stdout 2020-11-12T23:09:58.868062: 2DIAGNOSTIC, 20, -9.634531736374e-01, 1.187317757285e-04, 1.2482e+01, 1.0252e-02,
201112-23:09:58,880 nipype.interface INFO:
stdout 2020-11-12T23:09:58.880191: 2DIAGNOSTIC, 21, -9.634733200073e-01, 7.557094795629e-05, 1.2494e+01, 1.1899e-02,
201112-23:09:58,890 nipype.interface INFO:
stdout 2020-11-12T23:09:58.890741: 2DIAGNOSTIC, 22, -9.635014533997e-01, 3.421802466619e-05, 1.2505e+01, 1.0309e-02,
201112-23:09:58,899 nipype.interface INFO:
stdout 2020-11-12T23:09:58.899627: 2DIAGNOSTIC, 23, -9.635144472122e-01, 1.392307603965e-05, 1.2513e+01, 8.6508e-03,
201112-23:09:58,913 nipype.interface INFO:
stdout 2020-11-12T23:09:58.913422: 2DIAGNOSTIC, 24, -9.636229276657e-01, 9.511244570604e-06, 1.2527e+01, 1.3574e-02,
201112-23:09:58,922 nipype.interface INFO:
stdout 2020-11-12T23:09:58.922352: 2DIAGNOSTIC, 25, -9.637427926064e-01, 1.058739053406e-05, 1.2535e+01, 8.6820e-03,
201112-23:09:58,932 nipype.interface INFO:
stdout 2020-11-12T23:09:58.932877: 2DIAGNOSTIC, 26, -9.637497067451e-01, 1.119261833082e-05, 1.2546e+01, 1.0294e-02,
201112-23:09:58,945 nipype.interface INFO:
stdout 2020-11-12T23:09:58.945555: 2DIAGNOSTIC, 27, -9.637515544891e-01, 1.118433283409e-05, 1.2558e+01, 1.2433e-02,
201112-23:09:58,955 nipype.interface INFO:
stdout 2020-11-12T23:09:58.955843: 2DIAGNOSTIC, 28, -9.637518525124e-01, 1.081917980628e-05, 1.2568e+01, 1.0074e-02,
201112-23:09:58,964 nipype.interface INFO:
stdout 2020-11-12T23:09:58.964526: 2DIAGNOSTIC, 29, -9.637536406517e-01, 9.774347745406e-06, 1.2577e+01, 8.4620e-03,
201112-23:09:58,984 nipype.interface INFO:
stdout 2020-11-12T23:09:58.984596: 2DIAGNOSTIC, 30, -9.637537002563e-01, 8.257955414592e-06, 1.2597e+01, 1.9864e-02,
201112-23:09:58,994 nipype.interface INFO:
stdout 2020-11-12T23:09:58.994886: 2DIAGNOSTIC, 31, -9.637547135353e-01, 6.366592515406e-06, 1.2607e+01, 1.0083e-02,
201112-23:09:59,5 nipype.interface INFO:
stdout 2020-11-12T23:09:59.005358: 2DIAGNOSTIC, 32, -9.637541174889e-01, 4.369370344648e-06, 1.2617e+01, 1.0248e-02,
201112-23:09:59,15 nipype.interface INFO:
stdout 2020-11-12T23:09:59.015666: 2DIAGNOSTIC, 33, -9.637551903725e-01, 2.286315748279e-06, 1.2627e+01, 1.0108e-02,
201112-23:09:59,25 nipype.interface INFO:
stdout 2020-11-12T23:09:59.025926: 2DIAGNOSTIC, 34, -9.637550711632e-01, 1.115178406508e-06, 1.2637e+01, 1.0073e-02,
201112-23:09:59,36 nipype.interface INFO:
stdout 2020-11-12T23:09:59.036377: 2DIAGNOSTIC, 35, -9.637550115585e-01, 1.006215029520e-06, 1.2647e+01, 1.0227e-02,
201112-23:09:59,46 nipype.interface INFO:
stdout 2020-11-12T23:09:59.046644: 2DIAGNOSTIC, 36, -9.637551307678e-01, 9.520715593681e-07, 1.2657e+01, 1.0079e-02,
201112-23:09:59,56 nipype.interface INFO:
stdout 2020-11-12T23:09:59.056902: 2DIAGNOSTIC, 37, -9.637559056282e-01, 9.157125759884e-07, 1.2667e+01, 1.0070e-02,
201112-23:09:59,67 nipype.interface INFO:
stdout 2020-11-12T23:09:59.067679: 2DIAGNOSTIC, 38, -9.637555480003e-01, 8.752134590395e-07, 1.2678e+01, 1.0554e-02,
201112-23:09:59,77 nipype.interface INFO:
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201112-23:11:20,292 nipype.interface INFO:
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201112-23:14:28,855 nipype.interface INFO:
stdout 2020-11-12T23:14:28.855861:DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201112-23:14:28,856 nipype.interface INFO:
stdout 2020-11-12T23:14:28.856294: 2DIAGNOSTIC, 1, -4.878730177879e-01, inf, 2.8177e+02, 7.3297e+00,
201112-23:14:32,824 nipype.interface INFO:
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stdout 2020-11-12T23:14:42.936896: 2DIAGNOSTIC, 4, -4.884284138680e-01, inf, 2.9585e+02, 5.4547e+00,
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stdout 2020-11-12T23:14:52.416195: 2DIAGNOSTIC, 6, -4.884285628796e-01, inf, 3.0533e+02, 4.7529e+00,
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201112-23:15:03,947 nipype.interface INFO:
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stdout 2020-11-12T23:15:20.268387: 2DIAGNOSTIC, 11, -4.884287118912e-01, 1.563895784784e-05, 3.3318e+02, 6.1986e+00,
201112-23:15:24,970 nipype.interface INFO:
stdout 2020-11-12T23:15:24.970116: 2DIAGNOSTIC, 12, -4.884285032749e-01, 4.027584054711e-06, 3.3788e+02, 4.7011e+00,
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stdout 2020-11-12T23:15:29.685701: 2DIAGNOSTIC, 13, -4.884287118912e-01, 2.472680762367e-06, 3.4259e+02, 4.7072e+00,
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stdout 2020-11-12T23:15:35.951145: 2DIAGNOSTIC, 14, -4.884284138680e-01, 2.281205524923e-06, 3.4885e+02, 6.2649e+00,
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stdout 2020-11-12T23:15:40.569973: 2DIAGNOSTIC, 15, -4.884284138680e-01, 2.124681714122e-06, 3.5347e+02, 4.6184e+00,
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stdout 2020-11-12T23:15:46.681224: 2DIAGNOSTIC, 16, -4.884286522865e-01, 1.993951173063e-06, 3.5958e+02, 6.1108e+00,
201112-23:15:51,420 nipype.interface INFO:
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stdout 2020-11-12T23:15:56.099671: 2DIAGNOSTIC, 18, -4.884282350540e-01, 1.737800289447e-06, 3.6900e+02, 4.6790e+00,
201112-23:16:00,761 nipype.interface INFO:
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201112-23:16:49,180 nipype.interface INFO:
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201112-23:16:53,885 nipype.interface INFO:
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201112-23:17:03,365 nipype.interface INFO:
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201112-23:17:12,691 nipype.interface INFO:
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201112-23:17:31,465 nipype.interface INFO:
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201112-23:17:45,537 nipype.interface INFO:
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201112-23:18:04,286 nipype.interface INFO:
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201112-23:18:09,3 nipype.interface INFO:
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201112-23:18:13,669 nipype.interface INFO:
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201112-23:18:18,330 nipype.interface INFO:
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201112-23:18:27,763 nipype.interface INFO:
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201112-23:18:41,868 nipype.interface INFO:
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stdout 2020-11-12T23:19:10.007178: 2DIAGNOSTIC, 59, -4.884280264378e-01, 5.370599751586e-07, 5.6289e+02, 4.6987e+00,
201112-23:19:14,727 nipype.interface INFO:
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201112-23:19:20,205 nipype.interface INFO:
stdout 2020-11-12T23:19:20.205315: 2DIAGNOSTIC, 61, -4.884281456470e-01, 5.146030730430e-07, 5.7308e+02, 5.4777e+00,
201112-23:19:24,811 nipype.interface INFO:
stdout 2020-11-12T23:19:24.811629: 2DIAGNOSTIC, 62, -4.884281456470e-01, 5.063716912446e-07, 5.7769e+02, 4.6058e+00,
201112-23:19:29,467 nipype.interface INFO:
stdout 2020-11-12T23:19:29.467677: 2DIAGNOSTIC, 63, -4.884281456470e-01, 4.990560000806e-07, 5.8234e+02, 4.6553e+00,
201112-23:19:34,221 nipype.interface INFO:
stdout 2020-11-12T23:19:34.221109: 2DIAGNOSTIC, 64, -4.884279370308e-01, 4.917714022667e-07, 5.8710e+02, 4.7530e+00,
201112-23:19:38,889 nipype.interface INFO:
stdout 2020-11-12T23:19:38.889152: 2DIAGNOSTIC, 65, -4.884279370308e-01, 4.844231966672e-07, 5.9176e+02, 4.6676e+00,
201112-23:19:43,591 nipype.interface INFO:
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201112-23:19:48,234 nipype.interface INFO:
stdout 2020-11-12T23:19:48.234185: 2DIAGNOSTIC, 67, -4.884279370308e-01, 4.716047783404e-07, 6.0111e+02, 4.6426e+00,
201112-23:19:52,936 nipype.interface INFO:
stdout 2020-11-12T23:19:52.935907: 2DIAGNOSTIC, 68, -4.884279370308e-01, 4.642113822229e-07, 6.0581e+02, 4.7013e+00,
201112-23:19:57,647 nipype.interface INFO:
stdout 2020-11-12T23:19:57.647549: 2DIAGNOSTIC, 69, -4.884279370308e-01, 4.569279781208e-07, 6.1052e+02, 4.7109e+00,
201112-23:20:02,437 nipype.interface INFO:
stdout 2020-11-12T23:20:02.437718: 2DIAGNOSTIC, 70, -4.884279370308e-01, 4.499708552430e-07, 6.1531e+02, 4.7897e+00,
201112-23:20:07,99 nipype.interface INFO:
stdout 2020-11-12T23:20:07.099286: 2DIAGNOSTIC, 71, -4.884279370308e-01, 4.448338870588e-07, 6.1997e+02, 4.6611e+00,
201112-23:20:11,757 nipype.interface INFO:
stdout 2020-11-12T23:20:11.757528: 2DIAGNOSTIC, 72, -4.884279370308e-01, 4.401282467370e-07, 6.2463e+02, 4.6578e+00,
201112-23:20:16,476 nipype.interface INFO:
stdout 2020-11-12T23:20:16.476595: 2DIAGNOSTIC, 73, -4.884279370308e-01, 4.357619047823e-07, 6.2935e+02, 4.7186e+00,
201112-23:20:21,152 nipype.interface INFO:
stdout 2020-11-12T23:20:21.151932: 2DIAGNOSTIC, 74, -4.884279370308e-01, 4.298730971186e-07, 6.3402e+02, 4.6749e+00,
201112-23:20:25,800 nipype.interface INFO:
stdout 2020-11-12T23:20:25.800307: 2DIAGNOSTIC, 75, -4.884279370308e-01, 4.241413193995e-07, 6.3867e+02, 4.6479e+00,
201112-23:20:30,490 nipype.interface INFO:
stdout 2020-11-12T23:20:30.490399: 2DIAGNOSTIC, 76, -4.884279370308e-01, 4.185604041140e-07, 6.4336e+02, 4.6895e+00,
201112-23:20:35,209 nipype.interface INFO:
stdout 2020-11-12T23:20:35.209122: 2DIAGNOSTIC, 77, -4.884279370308e-01, 4.131244395467e-07, 6.4808e+02, 4.7183e+00,
201112-23:20:39,917 nipype.interface INFO:
stdout 2020-11-12T23:20:39.917487: 2DIAGNOSTIC, 78, -4.884279370308e-01, 4.078278834641e-07, 6.5279e+02, 4.7079e+00,
201112-23:20:44,677 nipype.interface INFO:
stdout 2020-11-12T23:20:44.677901: 2DIAGNOSTIC, 79, -4.884279370308e-01, 4.026653925848e-07, 6.5755e+02, 4.7600e+00,
201112-23:20:49,368 nipype.interface INFO:
stdout 2020-11-12T23:20:49.368405: 2DIAGNOSTIC, 80, -4.884279370308e-01, 3.976319646881e-07, 6.6224e+02, 4.6901e+00,
201112-23:20:54,0 nipype.interface INFO:
stdout 2020-11-12T23:20:54.000798: 2DIAGNOSTIC, 81, -4.884279370308e-01, 3.927228249268e-07, 6.6687e+02, 4.6319e+00,
201112-23:20:58,661 nipype.interface INFO:
stdout 2020-11-12T23:20:58.661873: 2DIAGNOSTIC, 82, -4.884279370308e-01, 3.879334542489e-07, 6.7153e+02, 4.6581e+00,
201112-23:21:03,414 nipype.interface INFO:
stdout 2020-11-12T23:21:03.414043: 2DIAGNOSTIC, 83, -4.884279370308e-01, 3.832594472897e-07, 6.7628e+02, 4.7516e+00,
201112-23:21:08,76 nipype.interface INFO:
stdout 2020-11-12T23:21:08.076024: 2DIAGNOSTIC, 84, -4.884279370308e-01, 3.786967681663e-07, 6.8094e+02, 4.6615e+00,
201112-23:21:12,794 nipype.interface INFO:
stdout 2020-11-12T23:21:12.794084: 2DIAGNOSTIC, 85, -4.884279370308e-01, 3.742414094177e-07, 6.8566e+02, 4.7176e+00,
201112-23:21:17,443 nipype.interface INFO:
stdout 2020-11-12T23:21:17.443752: 2DIAGNOSTIC, 86, -4.884279370308e-01, 3.698896762216e-07, 6.9031e+02, 4.6492e+00,
201112-23:21:22,155 nipype.interface INFO:
stdout 2020-11-12T23:21:22.155737: 2DIAGNOSTIC, 87, -4.884279370308e-01, 3.656380158645e-07, 6.9502e+02, 4.7115e+00,
201112-23:21:26,871 nipype.interface INFO:
stdout 2020-11-12T23:21:26.871734: 2DIAGNOSTIC, 88, -4.884279370308e-01, 3.614829608978e-07, 6.9973e+02, 4.7155e+00,
201112-23:21:31,627 nipype.interface INFO:
stdout 2020-11-12T23:21:31.627864: 2DIAGNOSTIC, 89, -4.884279370308e-01, 3.574212712465e-07, 7.0449e+02, 4.7554e+00,
201112-23:21:36,245 nipype.interface INFO:
stdout 2020-11-12T23:21:36.245142: 2DIAGNOSTIC, 90, -4.884279370308e-01, 3.534498489444e-07, 7.0911e+02, 4.6168e+00,
201112-23:21:40,884 nipype.interface INFO:
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201112-23:21:45,612 nipype.interface INFO:
stdout 2020-11-12T23:21:45.612077: 2DIAGNOSTIC, 92, -4.884279370308e-01, 3.457660397999e-07, 7.1847e+02, 4.7273e+00,
201112-23:21:50,287 nipype.interface INFO:
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201112-23:21:54,943 nipype.interface INFO:
stdout 2020-11-12T23:21:54.943567: 2DIAGNOSTIC, 94, -4.884279370308e-01, 3.384091940006e-07, 7.2780e+02, 4.6552e+00,
201112-23:21:59,625 nipype.interface INFO:
stdout 2020-11-12T23:21:59.625354: 2DIAGNOSTIC, 95, -4.884279370308e-01, 3.348469306275e-07, 7.3248e+02, 4.6813e+00,
201112-23:22:04,371 nipype.interface INFO:
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201112-23:22:09,131 nipype.interface INFO:
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201112-23:22:13,868 nipype.interface INFO:
stdout 2020-11-12T23:22:13.868494: 2DIAGNOSTIC, 98, -4.884279370308e-01, 3.245963284826e-07, 7.4673e+02, 4.7368e+00,
201112-23:22:18,554 nipype.interface INFO:
stdout 2020-11-12T23:22:18.553912: 2DIAGNOSTIC, 99, -4.884279370308e-01, 3.213175432393e-07, 7.5141e+02, 4.6850e+00,
201112-23:22:23,216 nipype.interface INFO:
stdout 2020-11-12T23:22:23.215992: 2DIAGNOSTIC, 100, -4.884279370308e-01, 3.181042984579e-07, 7.5607e+02, 4.6615e+00,
201112-23:22:23,216 nipype.interface INFO:
stdout 2020-11-12T23:22:23.216510: Elapsed time (stage 0): 7.5970e+02
201112-23:22:23,216 nipype.interface INFO:
stdout 2020-11-12T23:22:23.216678:
201112-23:22:23,225 nipype.interface INFO:
stdout 2020-11-12T23:22:23.225437:
201112-23:22:23,225 nipype.interface INFO:
stdout 2020-11-12T23:22:23.225816:Stage 1
201112-23:22:23,226 nipype.interface INFO:
stdout 2020-11-12T23:22:23.226008: iterations = 1000x500x250x100
201112-23:22:23,226 nipype.interface INFO:
stdout 2020-11-12T23:22:23.226168: convergence threshold = 1.0000e-08
201112-23:22:23,226 nipype.interface INFO:
stdout 2020-11-12T23:22:23.226324: convergence window size = 10
201112-23:22:23,226 nipype.interface INFO:
stdout 2020-11-12T23:22:23.226456: number of levels = 4
201112-23:22:23,226 nipype.interface INFO:
stdout 2020-11-12T23:22:23.226625: using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00)
201112-23:22:26,181 nipype.interface INFO:
stdout 2020-11-12T23:22:26.181397: preprocessing: winsorizing the image intensities
201112-23:22:26,181 nipype.interface INFO:
stdout 2020-11-12T23:22:26.181397: preprocessing: histogram matching the images
201112-23:22:26,181 nipype.interface INFO:
stdout 2020-11-12T23:22:26.181885: Shrink factors (level 1 out of 4): [8, 8, 8]
201112-23:22:26,184 nipype.interface INFO:
stdout 2020-11-12T23:22:26.184312: Shrink factors (level 2 out of 4): [4, 4, 4]
201112-23:22:26,184 nipype.interface INFO:
stdout 2020-11-12T23:22:26.184566: Shrink factors (level 3 out of 4): [2, 2, 2]
201112-23:22:26,184 nipype.interface INFO:
stdout 2020-11-12T23:22:26.184707: Shrink factors (level 4 out of 4): [1, 1, 1]
201112-23:22:26,184 nipype.interface INFO:
stdout 2020-11-12T23:22:26.184853: smoothing sigmas per level: [4, 2, 1, 0]
201112-23:22:26,185 nipype.interface INFO:
stdout 2020-11-12T23:22:26.185008: regular sampling (percentage = 2.5000e-01)
201112-23:22:26,199 nipype.interface INFO:
stdout 2020-11-12T23:22:26.199738:
201112-23:22:26,200 nipype.interface INFO:
stdout 2020-11-12T23:22:26.200130:*** Running AffineTransform registration ***
201112-23:22:26,200 nipype.interface INFO:
stdout 2020-11-12T23:22:26.200275:
201112-23:22:38,601 nipype.interface INFO:
stdout 2020-11-12T23:22:38.601809:DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201112-23:22:38,602 nipype.interface INFO:
stdout 2020-11-12T23:22:38.602223: 2DIAGNOSTIC, 1, -9.668261408806e-01, inf, 1.2412e+01, 1.2412e+01,
201112-23:22:38,613 nipype.interface INFO:
stdout 2020-11-12T23:22:38.613348: 2DIAGNOSTIC, 2, -9.682869315147e-01, inf, 1.2423e+01, 1.0899e-02,
201112-23:22:38,624 nipype.interface INFO:
stdout 2020-11-12T23:22:38.624486: 2DIAGNOSTIC, 3, -9.702013134956e-01, inf, 1.2434e+01, 1.0741e-02,
201112-23:22:38,635 nipype.interface INFO:
stdout 2020-11-12T23:22:38.635423: 2DIAGNOSTIC, 4, -9.719278812408e-01, inf, 1.2444e+01, 1.0549e-02,
201112-23:22:38,645 nipype.interface INFO:
stdout 2020-11-12T23:22:38.645884: 2DIAGNOSTIC, 5, -9.734809398651e-01, inf, 1.2454e+01, 1.0120e-02,
201112-23:22:38,656 nipype.interface INFO:
stdout 2020-11-12T23:22:38.656137: 2DIAGNOSTIC, 6, -9.754663109779e-01, inf, 1.2464e+01, 9.9740e-03,
201112-23:22:38,670 nipype.interface INFO:
stdout 2020-11-12T23:22:38.670152: 2DIAGNOSTIC, 7, -9.773159027100e-01, inf, 1.2478e+01, 1.3740e-02,
201112-23:22:38,694 nipype.interface INFO:
stdout 2020-11-12T23:22:38.694099: 2DIAGNOSTIC, 8, -9.787694811821e-01, inf, 1.2502e+01, 2.3614e-02,
201112-23:22:38,704 nipype.interface INFO:
stdout 2020-11-12T23:22:38.704626: 2DIAGNOSTIC, 9, -9.787827730179e-01, inf, 1.2512e+01, 1.0187e-02,
201112-23:22:38,715 nipype.interface INFO:
stdout 2020-11-12T23:22:38.715105: 2DIAGNOSTIC, 10, -9.788150787354e-01, 8.790957508609e-04, 1.2522e+01, 1.0217e-02,
201112-23:22:38,725 nipype.interface INFO:
stdout 2020-11-12T23:22:38.725579: 2DIAGNOSTIC, 11, -9.788643121719e-01, 6.840676069260e-04, 1.2532e+01, 1.0202e-02,
201112-23:22:38,736 nipype.interface INFO:
stdout 2020-11-12T23:22:38.736061: 2DIAGNOSTIC, 12, -9.789326786995e-01, 4.964727559127e-04, 1.2543e+01, 1.0217e-02,
201112-23:22:38,746 nipype.interface INFO:
stdout 2020-11-12T23:22:38.746525: 2DIAGNOSTIC, 13, -9.790127873421e-01, 3.373039362486e-04, 1.2553e+01, 1.0193e-02,
201112-23:22:38,757 nipype.interface INFO:
stdout 2020-11-12T23:22:38.757038: 2DIAGNOSTIC, 14, -9.790932536125e-01, 2.082246210193e-04, 1.2563e+01, 1.0248e-02,
201112-23:22:38,767 nipype.interface INFO:
stdout 2020-11-12T23:22:38.767476: 2DIAGNOSTIC, 15, -9.791629910469e-01, 1.089022771339e-04, 1.2573e+01, 1.0175e-02,
201112-23:22:38,777 nipype.interface INFO:
stdout 2020-11-12T23:22:38.777930: 2DIAGNOSTIC, 16, -9.792431592941e-01, 4.918526974507e-05, 1.2583e+01, 1.0186e-02,
201112-23:22:38,788 nipype.interface INFO:
stdout 2020-11-12T23:22:38.788517: 2DIAGNOSTIC, 17, -9.793621897697e-01, 2.515829692129e-05, 1.2594e+01, 1.0284e-02,
201112-23:22:38,799 nipype.interface INFO:
stdout 2020-11-12T23:22:38.799504: 2DIAGNOSTIC, 18, -9.795383810997e-01, 2.797849447234e-05, 1.2604e+01, 1.0660e-02,
201112-23:22:38,816 nipype.interface INFO:
stdout 2020-11-12T23:22:38.816717: 2DIAGNOSTIC, 19, -9.797230362892e-01, 3.105221185251e-05, 1.2621e+01, 1.6912e-02,
201112-23:22:38,827 nipype.interface INFO:
stdout 2020-11-12T23:22:38.827418: 2DIAGNOSTIC, 20, -9.797887206078e-01, 3.248108259868e-05, 1.2632e+01, 1.0328e-02,
201112-23:22:38,837 nipype.interface INFO:
stdout 2020-11-12T23:22:38.837855: 2DIAGNOSTIC, 21, -9.798592329025e-01, 3.257605567342e-05, 1.2642e+01, 1.0177e-02,
201112-23:22:38,850 nipype.interface INFO:
stdout 2020-11-12T23:22:38.850151: 2DIAGNOSTIC, 22, -9.800876379013e-01, 3.366879172972e-05, 1.2654e+01, 1.1989e-02,
201112-23:22:38,869 nipype.interface INFO:
stdout 2020-11-12T23:22:38.869293: 2DIAGNOSTIC, 23, -9.804314970970e-01, 3.690097219078e-05, 1.2673e+01, 1.8786e-02,
201112-23:22:38,879 nipype.interface INFO:
stdout 2020-11-12T23:22:38.879926: 2DIAGNOSTIC, 24, -9.804772138596e-01, 3.795370867010e-05, 1.2683e+01, 1.0284e-02,
201112-23:22:38,890 nipype.interface INFO:
stdout 2020-11-12T23:22:38.890399: 2DIAGNOSTIC, 25, -9.805963039398e-01, 3.775506411330e-05, 1.2693e+01, 1.0186e-02,
201112-23:22:38,900 nipype.interface INFO:
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201112-23:22:38,911 nipype.interface INFO:
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201112-23:22:38,923 nipype.interface INFO:
stdout 2020-11-12T23:22:38.923807: 2DIAGNOSTIC, 28, -9.806687831879e-01, 2.704910002649e-05, 1.2726e+01, 1.2162e-02,
201112-23:22:38,939 nipype.interface INFO:
stdout 2020-11-12T23:22:38.939484: 2DIAGNOSTIC, 29, -9.806799292564e-01, 2.228371158708e-05, 1.2741e+01, 1.5342e-02,
201112-23:22:38,950 nipype.interface INFO:
stdout 2020-11-12T23:22:38.950117: 2DIAGNOSTIC, 30, -9.806836843491e-01, 1.654588231759e-05, 1.2751e+01, 1.0314e-02,
201112-23:22:38,960 nipype.interface INFO:
stdout 2020-11-12T23:22:38.960662: 2DIAGNOSTIC, 31, -9.806882143021e-01, 1.039251128532e-05, 1.2761e+01, 1.0276e-02,
201112-23:22:38,979 nipype.interface INFO:
stdout 2020-11-12T23:22:38.979257: 2DIAGNOSTIC, 32, -9.806938171387e-01, 5.792670435767e-06, 1.2780e+01, 1.8298e-02,
201112-23:22:38,991 nipype.interface INFO:
stdout 2020-11-12T23:22:38.991617: 2DIAGNOSTIC, 33, -9.806994199753e-01, 4.098621957382e-06, 1.2792e+01, 1.2058e-02,
201112-23:22:39,7 nipype.interface INFO:
stdout 2020-11-12T23:22:39.007255: 2DIAGNOSTIC, 34, -9.807052016258e-01, 2.621865178298e-06, 1.2807e+01, 1.5334e-02,
201112-23:22:39,19 nipype.interface INFO:
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201112-23:22:39,31 nipype.interface INFO:
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201112-23:22:39,46 nipype.interface INFO:
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201112-23:22:39,59 nipype.interface INFO:
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201112-23:22:39,72 nipype.interface INFO:
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201112-23:22:39,85 nipype.interface INFO:
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201112-23:22:39,98 nipype.interface INFO:
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201112-23:22:39,111 nipype.interface INFO:
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201112-23:22:56,867 nipype.interface INFO:
stdout 2020-11-12T23:22:56.867628:DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201112-23:22:56,868 nipype.interface INFO:
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201112-23:24:08,567 nipype.interface INFO:
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stdout 2020-11-12T23:27:28.546655: 2DIAGNOSTIC, 240, -6.038942933083e-01, 1.325539926711e-07, 3.0164e+02, 8.3621e-01,
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201112-23:27:44,919 nipype.interface INFO:
stdout 2020-11-12T23:27:44.919591:DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201112-23:27:44,919 nipype.interface INFO:
stdout 2020-11-12T23:27:44.919978: 2DIAGNOSTIC, 1, -5.060082077980e-01, inf, 3.1800e+02, 8.1599e+00,
201112-23:27:49,635 nipype.interface INFO:
stdout 2020-11-12T23:27:49.635626: 2DIAGNOSTIC, 2, -5.061712861061e-01, inf, 3.2272e+02, 4.7154e+00,
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stdout 2020-11-12T23:27:54.398349: 2DIAGNOSTIC, 3, -5.062837004662e-01, inf, 3.2748e+02, 4.7623e+00,
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stdout 2020-11-12T23:27:59.142748: 2DIAGNOSTIC, 4, -5.064154267311e-01, inf, 3.3223e+02, 4.7440e+00,
201112-23:28:03,928 nipype.interface INFO:
stdout 2020-11-12T23:28:03.928293: 2DIAGNOSTIC, 5, -5.065832734108e-01, inf, 3.3701e+02, 4.7851e+00,
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stdout 2020-11-12T23:28:10.358859: 2DIAGNOSTIC, 6, -5.067857503891e-01, inf, 3.4344e+02, 6.4299e+00,
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stdout 2020-11-12T23:28:15.833778: 2DIAGNOSTIC, 7, -5.068251490593e-01, inf, 3.4892e+02, 5.4745e+00,
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stdout 2020-11-12T23:28:38.027328: 2DIAGNOSTIC, 11, -5.071030259132e-01, 1.087457058020e-04, 3.7111e+02, 4.7820e+00,
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stdout 2020-11-12T23:28:42.744792: 2DIAGNOSTIC, 12, -5.071372389793e-01, 8.841888484312e-05, 3.7582e+02, 4.7170e+00,
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stdout 2020-11-12T23:28:47.519430: 2DIAGNOSTIC, 13, -5.071839094162e-01, 7.043682853691e-05, 3.8060e+02, 4.7741e+00,
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stdout 2020-11-12T23:28:54.712479: 2DIAGNOSTIC, 14, -5.072414278984e-01, 5.632577085635e-05, 3.8779e+02, 7.1926e+00,
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stdout 2020-11-12T23:28:59.411124: 2DIAGNOSTIC, 15, -5.072602033615e-01, 4.586517025018e-05, 3.9249e+02, 4.6982e+00,
201112-23:29:04,162 nipype.interface INFO:
stdout 2020-11-12T23:29:04.162323: 2DIAGNOSTIC, 16, -5.072713494301e-01, 4.015946979052e-05, 3.9724e+02, 4.7507e+00,
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stdout 2020-11-12T23:29:10.518045: 2DIAGNOSTIC, 17, -5.072926878929e-01, 3.363466385053e-05, 4.0359e+02, 6.3550e+00,
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stdout 2020-11-12T23:29:16.839017: 2DIAGNOSTIC, 18, -5.073072910309e-01, 2.703743848542e-05, 4.0992e+02, 6.3205e+00,
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stdout 2020-11-12T23:29:22.412024: 2DIAGNOSTIC, 19, -5.073083043098e-01, 1.969533332158e-05, 4.1549e+02, 5.5725e+00,
201112-23:29:27,140 nipype.interface INFO:
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stdout 2020-11-12T23:29:37.487456: 2DIAGNOSTIC, 22, -5.073133707047e-01, 7.690117854509e-06, 4.3056e+02, 4.7916e+00,
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stdout 2020-11-12T23:29:43.030183: 2DIAGNOSTIC, 23, -5.073202848434e-01, 5.324803623807e-06, 4.3610e+02, 5.5423e+00,
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stdout 2020-11-12T23:29:47.741940: 2DIAGNOSTIC, 24, -5.073198080063e-01, 4.114043804293e-06, 4.4082e+02, 4.7113e+00,
201112-23:29:53,286 nipype.interface INFO:
stdout 2020-11-12T23:29:53.286132: 2DIAGNOSTIC, 25, -5.073282718658e-01, 3.355192575327e-06, 4.4636e+02, 5.5437e+00,
201112-23:29:58,24 nipype.interface INFO:
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201112-23:30:21,338 nipype.interface INFO:
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201112-23:30:49,881 nipype.interface INFO:
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201112-23:30:56,198 nipype.interface INFO:
stdout 2020-11-12T23:30:56.198425: 2DIAGNOSTIC, 35, -5.073410272598e-01, 1.217266685671e-06, 5.0927e+02, 6.3164e+00,
201112-23:31:01,750 nipype.interface INFO:
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201112-23:31:08,161 nipype.interface INFO:
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201112-23:31:31,4 nipype.interface INFO:
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201112-23:31:58,779 nipype.interface INFO:
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201112-23:32:04,302 nipype.interface INFO:
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201112-23:32:09,920 nipype.interface INFO:
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201112-23:32:21,11 nipype.interface INFO:
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201112-23:32:26,554 nipype.interface INFO:
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201112-23:32:32,129 nipype.interface INFO:
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201112-23:32:37,739 nipype.interface INFO:
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201112-23:32:53,500 nipype.interface INFO:
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201112-23:32:59,32 nipype.interface INFO:
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201112-23:33:04,634 nipype.interface INFO:
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201112-23:33:34,745 nipype.interface INFO:
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stdout 2020-11-12T23:33:57.661337: 2DIAGNOSTIC, 67, -5.073405504227e-01, 4.653958001199e-07, 6.9071e+02, 5.5533e+00,
201112-23:34:03,265 nipype.interface INFO:
stdout 2020-11-12T23:34:03.265686: 2DIAGNOSTIC, 68, -5.073406696320e-01, 4.612030295448e-07, 6.9632e+02, 5.6039e+00,
201112-23:34:08,869 nipype.interface INFO:
stdout 2020-11-12T23:34:08.869372: 2DIAGNOSTIC, 69, -5.073405504227e-01, 4.577166237141e-07, 7.0192e+02, 5.6032e+00,
201112-23:34:14,349 nipype.interface INFO:
stdout 2020-11-12T23:34:14.349882: 2DIAGNOSTIC, 70, -5.073406696320e-01, 4.551605172765e-07, 7.0740e+02, 5.4799e+00,
201112-23:34:20,693 nipype.interface INFO:
stdout 2020-11-12T23:34:20.693131: 2DIAGNOSTIC, 71, -5.073406696320e-01, 4.512217515185e-07, 7.1374e+02, 6.3428e+00,
201112-23:34:26,222 nipype.interface INFO:
stdout 2020-11-12T23:34:26.222542: 2DIAGNOSTIC, 72, -5.073407292366e-01, 4.457362479116e-07, 7.1927e+02, 5.5289e+00,
201112-23:34:31,744 nipype.interface INFO:
stdout 2020-11-12T23:34:31.744769: 2DIAGNOSTIC, 73, -5.073406696320e-01, 4.386432124193e-07, 7.2479e+02, 5.5218e+00,
201112-23:34:38,83 nipype.interface INFO:
stdout 2020-11-12T23:34:38.083096: 2DIAGNOSTIC, 74, -5.073408484459e-01, 4.337706513979e-07, 7.3113e+02, 6.3378e+00,
201112-23:34:43,634 nipype.interface INFO:
stdout 2020-11-12T23:34:43.634308: 2DIAGNOSTIC, 75, -5.073406696320e-01, 4.267968733984e-07, 7.3668e+02, 5.5506e+00,
201112-23:34:49,243 nipype.interface INFO:
stdout 2020-11-12T23:34:49.243485: 2DIAGNOSTIC, 76, -5.073407888412e-01, 4.220188429827e-07, 7.4229e+02, 5.6087e+00,
201112-23:34:54,753 nipype.interface INFO:
stdout 2020-11-12T23:34:54.753814: 2DIAGNOSTIC, 77, -5.073407888412e-01, 4.161256583757e-07, 7.4780e+02, 5.5099e+00,
201112-23:35:00,271 nipype.interface INFO:
stdout 2020-11-12T23:35:00.271202: 2DIAGNOSTIC, 78, -5.073407292366e-01, 4.105550317490e-07, 7.5332e+02, 5.5169e+00,
201112-23:35:05,863 nipype.interface INFO:
stdout 2020-11-12T23:35:05.863769: 2DIAGNOSTIC, 79, -5.073407292366e-01, 4.040178680498e-07, 7.5891e+02, 5.5918e+00,
201112-23:35:11,401 nipype.interface INFO:
stdout 2020-11-12T23:35:11.401166: 2DIAGNOSTIC, 80, -5.073407888412e-01, 3.987799459537e-07, 7.6445e+02, 5.5369e+00,
201112-23:35:16,940 nipype.interface INFO:
stdout 2020-11-12T23:35:16.940247: 2DIAGNOSTIC, 81, -5.073406696320e-01, 3.927189311526e-07, 7.6998e+02, 5.5384e+00,
201112-23:35:22,463 nipype.interface INFO:
stdout 2020-11-12T23:35:22.463449: 2DIAGNOSTIC, 82, -5.073407292366e-01, 3.876610605857e-07, 7.7551e+02, 5.5228e+00,
201112-23:35:28,20 nipype.interface INFO:
stdout 2020-11-12T23:35:28.020357: 2DIAGNOSTIC, 83, -5.073407292366e-01, 3.823122085578e-07, 7.8106e+02, 5.5565e+00,
201112-23:35:33,613 nipype.interface INFO:
stdout 2020-11-12T23:35:33.613765: 2DIAGNOSTIC, 84, -5.073407292366e-01, 3.784175248711e-07, 7.8666e+02, 5.5927e+00,
201112-23:35:39,134 nipype.interface INFO:
stdout 2020-11-12T23:35:39.134385: 2DIAGNOSTIC, 85, -5.073407292366e-01, 3.734432993951e-07, 7.9218e+02, 5.5201e+00,
201112-23:35:44,643 nipype.interface INFO:
stdout 2020-11-12T23:35:44.643337: 2DIAGNOSTIC, 86, -5.073407292366e-01, 3.694506460761e-07, 7.9768e+02, 5.5083e+00,
201112-23:35:50,220 nipype.interface INFO:
stdout 2020-11-12T23:35:50.220267: 2DIAGNOSTIC, 87, -5.073407292366e-01, 3.656123510609e-07, 8.0326e+02, 5.5765e+00,
201112-23:35:55,746 nipype.interface INFO:
stdout 2020-11-12T23:35:55.746637: 2DIAGNOSTIC, 88, -5.073407292366e-01, 3.614813124386e-07, 8.0879e+02, 5.5259e+00,
201112-23:36:01,318 nipype.interface INFO:
stdout 2020-11-12T23:36:01.317936: 2DIAGNOSTIC, 89, -5.073407292366e-01, 3.574357378966e-07, 8.1436e+02, 5.5708e+00,
201112-23:36:06,861 nipype.interface INFO:
stdout 2020-11-12T23:36:06.861548: 2DIAGNOSTIC, 90, -5.073407292366e-01, 3.538814894455e-07, 8.1990e+02, 5.5431e+00,
201112-23:36:12,439 nipype.interface INFO:
stdout 2020-11-12T23:36:12.439057: 2DIAGNOSTIC, 91, -5.073407292366e-01, 3.496249689761e-07, 8.2548e+02, 5.5770e+00,
201112-23:36:18,33 nipype.interface INFO:
stdout 2020-11-12T23:36:18.033422: 2DIAGNOSTIC, 92, -5.073407292366e-01, 3.458239916654e-07, 8.3107e+02, 5.5937e+00,
201112-23:36:23,545 nipype.interface INFO:
stdout 2020-11-12T23:36:23.545790: 2DIAGNOSTIC, 93, -5.073407292366e-01, 3.421047551910e-07, 8.3658e+02, 5.5119e+00,
201112-23:36:29,68 nipype.interface INFO:
stdout 2020-11-12T23:36:29.068139: 2DIAGNOSTIC, 94, -5.073407292366e-01, 3.384647015992e-07, 8.4211e+02, 5.5219e+00,
201112-23:36:34,643 nipype.interface INFO:
stdout 2020-11-12T23:36:34.643631: 2DIAGNOSTIC, 95, -5.073407292366e-01, 3.349012729359e-07, 8.4768e+02, 5.5751e+00,
201112-23:36:40,187 nipype.interface INFO:
stdout 2020-11-12T23:36:40.187726: 2DIAGNOSTIC, 96, -5.073407292366e-01, 3.314120817777e-07, 8.5322e+02, 5.5434e+00,
201112-23:36:45,727 nipype.interface INFO:
stdout 2020-11-12T23:36:45.727051: 2DIAGNOSTIC, 97, -5.073407292366e-01, 3.279948828094e-07, 8.5876e+02, 5.5386e+00,
201112-23:36:51,258 nipype.interface INFO:
stdout 2020-11-12T23:36:51.258123: 2DIAGNOSTIC, 98, -5.073407292366e-01, 3.246474022944e-07, 8.6429e+02, 5.5306e+00,
201112-23:36:56,817 nipype.interface INFO:
stdout 2020-11-12T23:36:56.817348: 2DIAGNOSTIC, 99, -5.073407292366e-01, 3.213675654479e-07, 8.6985e+02, 5.5588e+00,
201112-23:37:02,401 nipype.interface INFO:
stdout 2020-11-12T23:37:02.401530: 2DIAGNOSTIC, 100, -5.073407292366e-01, 3.181533543284e-07, 8.7544e+02, 5.5837e+00,
201112-23:37:02,402 nipype.interface INFO:
stdout 2020-11-12T23:37:02.401992: Elapsed time (stage 1): 8.7918e+02
201112-23:37:02,402 nipype.interface INFO:
stdout 2020-11-12T23:37:02.402146:
201112-23:37:02,411 nipype.interface INFO:
stdout 2020-11-12T23:37:02.411179:
201112-23:37:02,411 nipype.interface INFO:
stdout 2020-11-12T23:37:02.411639:Stage 2
201112-23:37:02,411 nipype.interface INFO:
stdout 2020-11-12T23:37:02.411811: iterations = 50x10x0
201112-23:37:02,412 nipype.interface INFO:
stdout 2020-11-12T23:37:02.412053: convergence threshold = 1.0000e-09
201112-23:37:02,412 nipype.interface INFO:
stdout 2020-11-12T23:37:02.412220: convergence window size = 15
201112-23:37:02,412 nipype.interface INFO:
stdout 2020-11-12T23:37:02.412380: number of levels = 3
201112-23:37:02,412 nipype.interface INFO:
stdout 2020-11-12T23:37:02.412602: using the CC metric (radius = 4, weight = 5.0000e-01)
201112-23:37:05,244 nipype.interface INFO:
stdout 2020-11-12T23:37:05.244047: preprocessing: winsorizing the image intensities
201112-23:37:05,244 nipype.interface INFO:
stdout 2020-11-12T23:37:05.244047: preprocessing: histogram matching the images
201112-23:37:05,244 nipype.interface INFO:
stdout 2020-11-12T23:37:05.244576: using the CC metric (radius = 4, weight = 5.0000e-01)
201112-23:37:08,108 nipype.interface INFO:
stdout 2020-11-12T23:37:08.108737: preprocessing: winsorizing the image intensities
201112-23:37:08,109 nipype.interface INFO:
stdout 2020-11-12T23:37:08.108737: preprocessing: histogram matching the images
201112-23:37:08,109 nipype.interface INFO:
stdout 2020-11-12T23:37:08.109281: Shrink factors (level 1 out of 3): [4, 4, 4]
201112-23:37:08,109 nipype.interface INFO:
stdout 2020-11-12T23:37:08.109450: Shrink factors (level 2 out of 3): [2, 2, 2]
201112-23:37:08,109 nipype.interface INFO:
stdout 2020-11-12T23:37:08.109587: Shrink factors (level 3 out of 3): [1, 1, 1]
201112-23:37:08,109 nipype.interface INFO:
stdout 2020-11-12T23:37:08.109726: smoothing sigmas per level: [2, 1, 0]
201112-23:37:08,109 nipype.interface INFO:
stdout 2020-11-12T23:37:08.109859: Using default NONE metricSamplingStrategy
201112-23:37:08,251 nipype.interface INFO:
stdout 2020-11-12T23:37:08.251774:
201112-23:37:08,252 nipype.interface INFO:
stdout 2020-11-12T23:37:08.252169:*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) ***
201112-23:37:08,252 nipype.interface INFO:
stdout 2020-11-12T23:37:08.252326:
201112-23:37:36,68 nipype.interface INFO:
stdout 2020-11-12T23:37:36.068471:XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201112-23:37:36,69 nipype.interface INFO:
stdout 2020-11-12T23:37:36.069094: 1DIAGNOSTIC, 1, -4.924313127995e-01, inf, 2.7817e+01, 2.7817e+01,
201112-23:37:54,598 nipype.interface INFO:
stdout 2020-11-12T23:37:54.598177: 1DIAGNOSTIC, 2, -5.033211708069e-01, inf, 4.6346e+01, 1.8529e+01,
201112-23:38:13,108 nipype.interface INFO:
stdout 2020-11-12T23:38:13.108637: 1DIAGNOSTIC, 3, -5.175330638885e-01, inf, 6.4856e+01, 1.8510e+01,
201112-23:38:31,638 nipype.interface INFO:
stdout 2020-11-12T23:38:31.638741: 1DIAGNOSTIC, 4, -5.294263362885e-01, inf, 8.3385e+01, 1.8529e+01,
201112-23:38:50,123 nipype.interface INFO:
stdout 2020-11-12T23:38:50.123124: 1DIAGNOSTIC, 5, -5.410189628601e-01, inf, 1.0187e+02, 1.8484e+01,
201112-23:39:08,636 nipype.interface INFO:
stdout 2020-11-12T23:39:08.636452: 1DIAGNOSTIC, 6, -5.494269728661e-01, inf, 1.2038e+02, 1.8513e+01,
201112-23:39:27,98 nipype.interface INFO:
stdout 2020-11-12T23:39:27.097872: 1DIAGNOSTIC, 7, -5.574621558189e-01, inf, 1.3884e+02, 1.8461e+01,
201112-23:39:45,708 nipype.interface INFO:
stdout 2020-11-12T23:39:45.708836: 1DIAGNOSTIC, 8, -5.637493729591e-01, inf, 1.5745e+02, 1.8610e+01,
201112-23:40:04,268 nipype.interface INFO:
stdout 2020-11-12T23:40:04.268521: 1DIAGNOSTIC, 9, -5.694109797478e-01, inf, 1.7601e+02, 1.8559e+01,
201112-23:40:22,743 nipype.interface INFO:
stdout 2020-11-12T23:40:22.743601: 1DIAGNOSTIC, 10, -5.744605064392e-01, inf, 1.9449e+02, 1.8475e+01,
201112-23:40:41,234 nipype.interface INFO:
stdout 2020-11-12T23:40:41.234669: 1DIAGNOSTIC, 11, -5.789875388145e-01, inf, 2.1298e+02, 1.8490e+01,
201112-23:40:59,805 nipype.interface INFO:
stdout 2020-11-12T23:40:59.805789: 1DIAGNOSTIC, 12, -5.831114649773e-01, inf, 2.3155e+02, 1.8570e+01,
201112-23:41:18,358 nipype.interface INFO:
stdout 2020-11-12T23:41:18.358576: 1DIAGNOSTIC, 13, -5.869470238686e-01, inf, 2.5010e+02, 1.8552e+01,
201112-23:41:36,869 nipype.interface INFO:
stdout 2020-11-12T23:41:36.869545: 1DIAGNOSTIC, 14, -5.904420614243e-01, inf, 2.6861e+02, 1.8510e+01,
201112-23:41:55,541 nipype.interface INFO:
stdout 2020-11-12T23:41:55.541066: 1DIAGNOSTIC, 15, -5.935578346252e-01, 7.237622048706e-03, 2.8728e+02, 1.8671e+01,
201112-23:42:14,305 nipype.interface INFO:
stdout 2020-11-12T23:42:14.305479: 1DIAGNOSTIC, 16, -5.964470505714e-01, 5.998644512147e-03, 3.0605e+02, 1.8764e+01,
201112-23:42:33,38 nipype.interface INFO:
stdout 2020-11-12T23:42:33.038849: 1DIAGNOSTIC, 17, -5.988332033157e-01, 4.927715286613e-03, 3.2478e+02, 1.8733e+01,
201112-23:42:51,739 nipype.interface INFO:
stdout 2020-11-12T23:42:51.739363: 1DIAGNOSTIC, 18, -6.013167500496e-01, 4.090641159564e-03, 3.4348e+02, 1.8700e+01,
201112-23:43:10,522 nipype.interface INFO:
stdout 2020-11-12T23:43:10.522359: 1DIAGNOSTIC, 19, -6.031157970428e-01, 3.417524276301e-03, 3.6226e+02, 1.8782e+01,
201112-23:43:29,52 nipype.interface INFO:
stdout 2020-11-12T23:43:29.052322: 1DIAGNOSTIC, 20, -6.049419641495e-01, 2.897994592786e-03, 3.8079e+02, 1.8529e+01,
201112-23:43:47,632 nipype.interface INFO:
stdout 2020-11-12T23:43:47.632472: 1DIAGNOSTIC, 21, -6.062918901443e-01, 2.464103046805e-03, 3.9937e+02, 1.8579e+01,
201112-23:44:06,300 nipype.interface INFO:
stdout 2020-11-12T23:44:06.300330: 1DIAGNOSTIC, 22, -6.077102422714e-01, 2.111816313118e-03, 4.1804e+02, 1.8667e+01,
201112-23:44:25,101 nipype.interface INFO:
stdout 2020-11-12T23:44:25.101602: 1DIAGNOSTIC, 23, -6.091372966766e-01, 1.814366900362e-03, 4.3684e+02, 1.8801e+01,
201112-23:44:43,664 nipype.interface INFO:
stdout 2020-11-12T23:44:43.664799: 1DIAGNOSTIC, 24, -6.104249954224e-01, 1.562387100421e-03, 4.5540e+02, 1.8563e+01,
201112-23:45:02,274 nipype.interface INFO:
stdout 2020-11-12T23:45:02.274387: 1DIAGNOSTIC, 25, -6.114671826363e-01, 1.346056931652e-03, 4.7401e+02, 1.8609e+01,
201112-23:45:20,831 nipype.interface INFO:
stdout 2020-11-12T23:45:20.831640: 1DIAGNOSTIC, 26, -6.124171614647e-01, 1.159682986327e-03, 4.9257e+02, 1.8557e+01,
201112-23:45:39,362 nipype.interface INFO:
stdout 2020-11-12T23:45:39.362496: 1DIAGNOSTIC, 27, -6.134454011917e-01, 1.001437776722e-03, 5.1110e+02, 1.8530e+01,
201112-23:45:57,952 nipype.interface INFO:
stdout 2020-11-12T23:45:57.952399: 1DIAGNOSTIC, 28, -6.143859624863e-01, 8.685103384778e-04, 5.2968e+02, 1.8589e+01,
201112-23:46:16,596 nipype.interface INFO:
stdout 2020-11-12T23:46:16.596402: 1DIAGNOSTIC, 29, -6.150904893875e-01, 7.556436466984e-04, 5.4833e+02, 1.8643e+01,
201112-23:46:35,172 nipype.interface INFO:
stdout 2020-11-12T23:46:35.172401: 1DIAGNOSTIC, 30, -6.157121658325e-01, 6.591650890186e-04, 5.6690e+02, 1.8576e+01,
201112-23:46:53,808 nipype.interface INFO:
stdout 2020-11-12T23:46:53.808456: 1DIAGNOSTIC, 31, -6.162289977074e-01, 5.769663839601e-04, 5.8554e+02, 1.8635e+01,
201112-23:47:12,515 nipype.interface INFO:
stdout 2020-11-12T23:47:12.515761: 1DIAGNOSTIC, 32, -6.165529489517e-01, 5.030093598180e-04, 6.0425e+02, 1.8707e+01,
201112-23:47:31,197 nipype.interface INFO:
stdout 2020-11-12T23:47:31.197744: 1DIAGNOSTIC, 33, -6.168988347054e-01, 4.402900813147e-04, 6.2293e+02, 1.8681e+01,
201112-23:47:49,765 nipype.interface INFO:
stdout 2020-11-12T23:47:49.765239: 1DIAGNOSTIC, 34, -6.172810792923e-01, 3.834648232441e-04, 6.4149e+02, 1.8567e+01,
201112-23:48:08,368 nipype.interface INFO:
stdout 2020-11-12T23:48:08.368199: 1DIAGNOSTIC, 35, -6.176630854607e-01, 3.341629926581e-04, 6.6010e+02, 1.8602e+01,
201112-23:48:26,957 nipype.interface INFO:
stdout 2020-11-12T23:48:26.957404: 1DIAGNOSTIC, 36, -6.180292367935e-01, 2.887705049943e-04, 6.7869e+02, 1.8589e+01,
201112-23:48:45,575 nipype.interface INFO:
stdout 2020-11-12T23:48:45.575012: 1DIAGNOSTIC, 37, -6.184098720551e-01, 2.492135972716e-04, 6.9730e+02, 1.8617e+01,
201112-23:49:04,178 nipype.interface INFO:
stdout 2020-11-12T23:49:04.178759: 1DIAGNOSTIC, 38, -6.188439130783e-01, 2.169515646528e-04, 7.1591e+02, 1.8603e+01,
201112-23:49:22,803 nipype.interface INFO:
stdout 2020-11-12T23:49:22.803268: 1DIAGNOSTIC, 39, -6.192900538445e-01, 1.914705790114e-04, 7.3453e+02, 1.8624e+01,
201112-23:49:41,476 nipype.interface INFO:
stdout 2020-11-12T23:49:41.476272: 1DIAGNOSTIC, 40, -6.197443008423e-01, 1.711261138553e-04, 7.5320e+02, 1.8672e+01,
201112-23:50:00,23 nipype.interface INFO:
stdout 2020-11-12T23:50:00.023144: 1DIAGNOSTIC, 41, -6.201896071434e-01, 1.553296169732e-04, 7.7175e+02, 1.8546e+01,
201112-23:50:18,707 nipype.interface INFO:
stdout 2020-11-12T23:50:18.707415: 1DIAGNOSTIC, 42, -6.209149360657e-01, 1.470278657507e-04, 7.9043e+02, 1.8684e+01,
201112-23:50:37,367 nipype.interface INFO:
stdout 2020-11-12T23:50:37.367564: 1DIAGNOSTIC, 43, -6.213422417641e-01, 1.429219846614e-04, 8.0909e+02, 1.8660e+01,
201112-23:50:56,142 nipype.interface INFO:
stdout 2020-11-12T23:50:56.141993: 1DIAGNOSTIC, 44, -6.218400001526e-01, 1.415885490132e-04, 8.2786e+02, 1.8774e+01,
201112-23:51:14,764 nipype.interface INFO:
stdout 2020-11-12T23:51:14.764517: 1DIAGNOSTIC, 45, -6.223507523537e-01, 1.422935165465e-04, 8.4649e+02, 1.8622e+01,
201112-23:51:33,427 nipype.interface INFO:
stdout 2020-11-12T23:51:33.427393: 1DIAGNOSTIC, 46, -6.227660775185e-01, 1.433564757463e-04, 8.6515e+02, 1.8662e+01,
201112-23:51:52,32 nipype.interface INFO:
stdout 2020-11-12T23:51:52.032630: 1DIAGNOSTIC, 47, -6.231737136841e-01, 1.431918790331e-04, 8.8375e+02, 1.8605e+01,
201112-23:52:10,641 nipype.interface INFO:
stdout 2020-11-12T23:52:10.640888: 1DIAGNOSTIC, 48, -6.236432194710e-01, 1.423071516911e-04, 9.0236e+02, 1.8608e+01,
201112-23:52:29,255 nipype.interface INFO:
stdout 2020-11-12T23:52:29.255403: 1DIAGNOSTIC, 49, -6.240656375885e-01, 1.405636430718e-04, 9.2098e+02, 1.8614e+01,
201112-23:52:47,863 nipype.interface INFO:
stdout 2020-11-12T23:52:47.863483: 1DIAGNOSTIC, 50, -6.245330572128e-01, 1.382559275953e-04, 9.3958e+02, 1.8607e+01,
201112-23:55:17,319 nipype.interface INFO:
stdout 2020-11-12T23:55:17.318858:XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201112-23:55:17,319 nipype.interface INFO:
stdout 2020-11-12T23:55:17.319501: 1DIAGNOSTIC, 1, -4.853690266609e-01, inf, 1.0890e+03, 1.4946e+02,
201112-23:57:42,280 nipype.interface INFO:
stdout 2020-11-12T23:57:42.280470: 1DIAGNOSTIC, 2, -4.902630448341e-01, inf, 1.2340e+03, 1.4496e+02,
201113-00:00:07,204 nipype.interface INFO:
stdout 2020-11-13T00:00:07.204637: 1DIAGNOSTIC, 3, -4.949514269829e-01, inf, 1.3789e+03, 1.4492e+02,
201113-00:02:33,617 nipype.interface INFO:
stdout 2020-11-13T00:02:33.617105: 1DIAGNOSTIC, 4, -4.990280270576e-01, inf, 1.5253e+03, 1.4641e+02,
201113-00:05:00,251 nipype.interface INFO:
stdout 2020-11-13T00:05:00.250908: 1DIAGNOSTIC, 5, -5.027387142181e-01, inf, 1.6720e+03, 1.4663e+02,
201113-00:07:24,918 nipype.interface INFO:
stdout 2020-11-13T00:07:24.918416: 1DIAGNOSTIC, 6, -5.061594247818e-01, inf, 1.8166e+03, 1.4467e+02,
201113-00:09:50,885 nipype.interface INFO:
stdout 2020-11-13T00:09:50.885791: 1DIAGNOSTIC, 7, -5.091838836670e-01, inf, 1.9626e+03, 1.4597e+02,
201113-00:12:17,412 nipype.interface INFO:
stdout 2020-11-13T00:12:17.412453: 1DIAGNOSTIC, 8, -5.121039748192e-01, inf, 2.1091e+03, 1.4653e+02,
201113-00:14:43,472 nipype.interface INFO:
stdout 2020-11-13T00:14:43.471874: 1DIAGNOSTIC, 9, -5.147694349289e-01, inf, 2.2552e+03, 1.4606e+02,
201113-00:17:11,78 nipype.interface INFO:
stdout 2020-11-13T00:17:11.078575: 1DIAGNOSTIC, 10, -5.170279741287e-01, inf, 2.4028e+03, 1.4761e+02,
201113-00:17:32,336 nipype.interface INFO:
stdout 2020-11-13T00:17:32.336429: Elapsed time (stage 2): 2430
201113-00:17:32,337 nipype.interface INFO:
stdout 2020-11-13T00:17:32.337036:
201113-00:17:32,343 nipype.interface INFO:
stdout 2020-11-13T00:17:32.343012:
201113-00:17:32,343 nipype.interface INFO:
stdout 2020-11-13T00:17:32.343379:Total elapsed time: 4069
201113-00:19:08,684 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.norm".
201113-00:19:08,720 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.map_brainmask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/map_brainmask".
201113-00:19:08,770 nipype.workflow INFO:
[Node] Running "map_brainmask" ("CPAC.utils.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /ants_template/oasis/T_template0_BrainCerebellumProbabilityMask.nii.gz --interpolation Gaussian --output T_template0_BrainCerebellumProbabilityMask_trans.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-181_ses-1_T1w_resample.nii.gz --transform [ /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/norm/anat_to_template0GenericAffine.mat, 1 ] --transform [ /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/norm/anat_to_template1InverseWarp.nii.gz, 0 ]
201113-00:19:44,903 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.map_brainmask".
201113-00:19:44,905 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.thr_brainmask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/thr_brainmask".
201113-00:19:44,913 nipype.workflow INFO:
[Node] Running "thr_brainmask" ("CPAC.utils.interfaces.ants.ThresholdImage"), a CommandLine Interface with command:
ThresholdImage 3 /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/map_brainmask/T_template0_BrainCerebellumProbabilityMask_trans.nii.gz T_template0_BrainCerebellumProbabilityMask_trans_resampled.nii.gz 0.500000 1.000000 1.000000 0.000000
201113-00:19:45,392 nipype.interface INFO:
stderr 2020-11-13T00:19:45.392268: file 1.000000 does not exist .
201113-00:19:45,923 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.thr_brainmask".
201113-00:19:45,924 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.03_pad_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/03_pad_mask".
201113-00:19:45,930 nipype.workflow INFO:
[Node] Running "03_pad_mask" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 T_template0_BrainCerebellumProbabilityMask_trans_resampled_maths.nii.gz PadImage /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/thr_brainmask/T_template0_BrainCerebellumProbabilityMask_trans_resampled.nii.gz 10
201113-00:19:47,320 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.03_pad_mask".
201113-00:19:47,322 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.dil_brainmask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/dil_brainmask".
201113-00:19:47,328 nipype.workflow INFO:
[Node] Running "dil_brainmask" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 T_template0_BrainCerebellumProbabilityMask_trans_resampled_maths.nii.gz MD /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/thr_brainmask/T_template0_BrainCerebellumProbabilityMask_trans_resampled.nii.gz 2
201113-00:19:49,123 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.dil_brainmask".
201113-00:19:49,124 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.get_brainmask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/get_brainmask".
201113-00:19:49,131 nipype.workflow INFO:
[Node] Running "get_brainmask" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 T_template0_BrainCerebellumProbabilityMask_trans_resampled_maths_maths.nii.gz GetLargestComponent /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/dil_brainmask/T_template0_BrainCerebellumProbabilityMask_trans_resampled_maths.nii.gz
201113-00:19:50,669 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.get_brainmask".
201113-00:19:50,671 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.01_atropos" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/01_atropos".
201113-00:19:50,704 nipype.workflow INFO:
[Node] Running "01_atropos" ("nipype.interfaces.ants.segmentation.Atropos"), a CommandLine Interface with command:
Atropos --image-dimensionality 3 --initialization KMeans[3] --intensity-image /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-181_ses-1_T1w_resample_maths_corrected.nii.gz --likelihood-model Gaussian --mask-image /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/get_brainmask/T_template0_BrainCerebellumProbabilityMask_trans_resampled_maths_maths.nii.gz --mrf [0.1,1x1x1] --convergence [3,0] --output [sub-181_ses-1_T1w_resample_maths_corrected_labeled.nii.gz] --use-random-seed 1
201113-00:20:43,177 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.01_atropos".
201113-00:20:43,179 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.02_pad_segm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/02_pad_segm".
201113-00:20:43,185 nipype.workflow INFO:
[Node] Running "02_pad_segm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-181_ses-1_T1w_resample_maths_corrected_labeled_maths.nii.gz PadImage /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/01_atropos/sub-181_ses-1_T1w_resample_maths_corrected_labeled.nii.gz 10
201113-00:20:44,671 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.02_pad_segm".
201113-00:20:44,673 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.04_sel_labels" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/04_sel_labels".
201113-00:20:44,678 nipype.workflow INFO:
[Node] Running "04_sel_labels" ("nipype.interfaces.utility.wrappers.Function")
201113-00:20:45,378 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.04_sel_labels".
201113-00:20:45,380 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.27_depad_csf" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/27_depad_csf".
201113-00:20:45,387 nipype.workflow INFO:
[Node] Running "27_depad_csf" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-181_ses-1_T1w_resample_maths_corrected_labeled_maths_class-01_maths.nii.gz PadImage /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/04_sel_labels/sub-181_ses-1_T1w_resample_maths_corrected_labeled_maths_class-01.nii.gz -10
201113-00:20:46,632 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.27_depad_csf".
201113-00:20:46,633 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.10_me_csf" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/10_me_csf".
201113-00:20:46,639 nipype.workflow INFO:
[Node] Running "10_me_csf" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-181_ses-1_T1w_resample_maths_corrected_labeled_maths_class-01_maths.nii.gz ME /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/04_sel_labels/sub-181_ses-1_T1w_resample_maths_corrected_labeled_maths_class-01.nii.gz 10
201113-00:20:52,140 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.10_me_csf".
201113-00:20:52,143 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.06_get_gm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/06_get_gm".
201113-00:20:52,149 nipype.workflow INFO:
[Node] Running "06_get_gm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-181_ses-1_T1w_resample_maths_corrected_labeled_maths_class-02_maths.nii.gz GetLargestComponent /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/04_sel_labels/sub-181_ses-1_T1w_resample_maths_corrected_labeled_maths_class-02.nii.gz
201113-00:20:53,976 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.06_get_gm".
201113-00:20:53,978 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.07_fill_gm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/07_fill_gm".
201113-00:20:53,985 nipype.workflow INFO:
[Node] Running "07_fill_gm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-181_ses-1_T1w_resample_maths_corrected_labeled_maths_class-02_maths_maths.nii.gz FillHoles /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/06_get_gm/sub-181_ses-1_T1w_resample_maths_corrected_labeled_maths_class-02_maths.nii.gz 2
201113-00:21:04,395 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.07_fill_gm".
201113-00:21:04,397 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.08_mult_gm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/08_mult_gm".
201113-00:21:04,404 nipype.workflow INFO:
[Node] Running "08_mult_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command:
MultiplyImages 3 /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/06_get_gm/sub-181_ses-1_T1w_resample_maths_corrected_labeled_maths_class-02_maths.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/07_fill_gm/sub-181_ses-1_T1w_resample_maths_corrected_labeled_maths_class-02_maths_maths.nii.gz 08_mult_gm.nii.gz
201113-00:21:05,913 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.08_mult_gm".
201113-00:21:05,915 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.11_add_gm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/11_add_gm".
201113-00:21:05,921 nipype.workflow INFO:
[Node] Running "11_add_gm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 08_mult_gm_maths.nii.gz addtozero /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/08_mult_gm/08_mult_gm.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/10_me_csf/sub-181_ses-1_T1w_resample_maths_corrected_labeled_maths_class-01_maths.nii.gz
201113-00:21:10,234 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.11_add_gm".
201113-00:21:10,236 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.12_relabel_gm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/12_relabel_gm".
201113-00:21:10,241 nipype.workflow INFO:
[Node] Running "12_relabel_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command:
MultiplyImages 3 /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/11_add_gm/08_mult_gm_maths.nii.gz 2.0 12_relabel_gm.nii.gz
201113-00:21:11,461 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.12_relabel_gm".
201113-00:21:11,464 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.25_depad_gm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/25_depad_gm".
201113-00:21:11,470 nipype.workflow INFO:
[Node] Running "25_depad_gm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 12_relabel_gm_maths.nii.gz PadImage /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz -10
201113-00:21:12,969 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.25_depad_gm".
201113-00:21:12,971 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.05_get_wm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/05_get_wm".
201113-00:21:12,977 nipype.workflow INFO:
[Node] Running "05_get_wm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-181_ses-1_T1w_resample_maths_corrected_labeled_maths_class-03_maths.nii.gz GetLargestComponent /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/04_sel_labels/sub-181_ses-1_T1w_resample_maths_corrected_labeled_maths_class-03.nii.gz
201113-00:21:14,767 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.05_get_wm".
201113-00:21:14,769 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.09_relabel_wm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/09_relabel_wm".
201113-00:21:14,775 nipype.workflow INFO:
[Node] Running "09_relabel_wm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command:
MultiplyImages 3 /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/05_get_wm/sub-181_ses-1_T1w_resample_maths_corrected_labeled_maths_class-03_maths.nii.gz 3.0 09_relabel_wm.nii.gz
201113-00:21:15,958 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.09_relabel_wm".
201113-00:21:15,960 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.26_depad_wm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/26_depad_wm".
201113-00:21:15,965 nipype.workflow INFO:
[Node] Running "26_depad_wm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths.nii.gz PadImage /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz -10
201113-00:21:17,404 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.26_depad_wm".
201113-00:21:17,406 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.merge_tpms" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/merge_tpms".
201113-00:21:17,412 nipype.workflow INFO:
[Node] Running "merge_tpms" ("nipype.interfaces.utility.base.Merge")
201113-00:21:17,641 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.merge_tpms".
201113-00:21:17,651 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.13_add_gm_wm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/13_add_gm_wm".
201113-00:21:17,658 nipype.workflow INFO:
[Node] Running "13_add_gm_wm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths.nii.gz addtozero /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz
201113-00:21:21,927 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.13_add_gm_wm".
201113-00:21:21,929 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.24_depad_segm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/24_depad_segm".
201113-00:21:21,935 nipype.workflow INFO:
[Node] Running "24_depad_segm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_maths.nii.gz PadImage /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/13_add_gm_wm/09_relabel_wm_maths.nii.gz -10
201113-00:21:23,443 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.24_depad_segm".
201113-00:21:23,444 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.14_sel_labels2" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/14_sel_labels2".
201113-00:21:23,450 nipype.workflow INFO:
[Node] Running "14_sel_labels2" ("nipype.interfaces.utility.wrappers.Function")
201113-00:21:24,89 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.14_sel_labels2".
201113-00:21:24,91 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.15_add_7" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/15_add_7".
201113-00:21:24,98 nipype.workflow INFO:
[Node] Running "15_add_7" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths.nii.gz addtozero /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-03.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-02.nii.gz
201113-00:21:28,3 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.15_add_7".
201113-00:21:28,5 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.16_me_7" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/16_me_7".
201113-00:21:28,10 nipype.workflow INFO:
[Node] Running "16_me_7" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths.nii.gz ME /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/15_add_7/09_relabel_wm_maths_class-03_maths.nii.gz 2
201113-00:21:31,683 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.16_me_7".
201113-00:21:31,684 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.17_comp_7" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/17_comp_7".
201113-00:21:31,690 nipype.workflow INFO:
[Node] Running "17_comp_7" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz GetLargestComponent /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/16_me_7/09_relabel_wm_maths_class-03_maths_maths.nii.gz
201113-00:21:33,614 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.17_comp_7".
201113-00:21:33,616 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.18_md_7" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/18_md_7".
201113-00:21:33,621 nipype.workflow INFO:
[Node] Running "18_md_7" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz MD /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/17_comp_7/09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz 4
201113-00:21:35,874 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.18_md_7".
201113-00:21:35,875 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.19_fill_7" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/19_fill_7".
201113-00:21:35,881 nipype.workflow INFO:
[Node] Running "19_fill_7" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz FillHoles /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/18_md_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz 2
201113-00:21:46,29 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.19_fill_7".
201113-00:21:46,31 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.20_add_7_2" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/20_add_7_2".
201113-00:21:46,38 nipype.workflow INFO:
[Node] Running "20_add_7_2" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz addtozero /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/19_fill_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/03_pad_mask/T_template0_BrainCerebellumProbabilityMask_trans_resampled_maths.nii.gz
201113-00:21:50,277 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.20_add_7_2".
201113-00:21:50,279 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.21_md_7_2" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/21_md_7_2".
201113-00:21:50,286 nipype.workflow INFO:
[Node] Running "21_md_7_2" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz MD /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/20_add_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz 5
201113-00:21:52,481 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.21_md_7_2".
201113-00:21:52,496 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.22_me_7_2" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/22_me_7_2".
201113-00:21:52,502 nipype.workflow INFO:
[Node] Running "22_me_7_2" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz ME /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/21_md_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz 5
201113-00:21:56,287 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.22_me_7_2".
201113-00:21:56,289 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.23_depad_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/23_depad_mask".
201113-00:21:56,295 nipype.workflow INFO:
[Node] Running "23_depad_mask" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz PadImage /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/22_me_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz -10
201113-00:21:57,718 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.23_depad_mask".
201113-00:21:57,720 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.msk_conform" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/msk_conform".
201113-00:21:57,726 nipype.workflow INFO:
[Node] Running "msk_conform" ("nipype.interfaces.utility.wrappers.Function")
201113-00:21:58,238 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.msk_conform".
201113-00:21:58,240 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.copy_xform" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/copy_xform".
201113-00:21:58,247 nipype.workflow INFO:
[Node] Running "copy_xform" ("CPAC.utils.interfaces.utils.CopyXForm")
201113-00:22:00,42 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.copy_xform".
201113-00:22:00,44 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_anatomical_brain_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/sinker_0_anatomical_brain_mask".
201113-00:22:00,52 nipype.workflow INFO:
[Node] Running "sinker_0_anatomical_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:22:00,285 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_anatomical_brain_mask".
201113-00:22:00,287 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.sel_wm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/sel_wm".
201113-00:22:00,293 nipype.workflow INFO:
[Node] Running "sel_wm" ("nipype.interfaces.utility.base.Select")
201113-00:22:00,525 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.sel_wm".
201113-00:22:00,527 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.inu_n4_final" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4_final".
201113-00:22:00,536 nipype.workflow INFO:
[Node] Setting-up "_inu_n4_final0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4_final/mapflow/_inu_n4_final0".
201113-00:22:00,542 nipype.workflow INFO:
[Node] Running "_inu_n4_final0" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-181_ses-1_T1w_resample.nii.gz --convergence [ 50x50x50x50x50, 1e-07 ] --output [ sub-181_ses-1_T1w_resample_corrected.nii.gz, sub-181_ses-1_T1w_resample_bias.nii.gz ] --shrink-factor 4 --weight-image /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/copy_xform/09_relabel_wm_maths_xform.nii.gz
201113-00:22:58,685 nipype.workflow INFO:
[Node] Finished "_inu_n4_final0".
201113-00:22:58,690 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.inu_n4_final".
201113-00:22:58,690 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.apply_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/apply_mask".
201113-00:22:58,699 nipype.workflow INFO:
[Node] Setting-up "_apply_mask0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/apply_mask/mapflow/_apply_mask0".
201113-00:22:58,705 nipype.workflow INFO:
[Node] Running "_apply_mask0" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4_final/mapflow/_inu_n4_final0/sub-181_ses-1_T1w_resample_corrected.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/copy_xform/09_relabel_wm_mask_xform.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/apply_mask/mapflow/_apply_mask0/sub-181_ses-1_T1w_resample_corrected_masked.nii.gz
201113-00:23:00,280 nipype.workflow INFO:
[Node] Finished "_apply_mask0".
201113-00:23:00,284 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.apply_mask".
201113-00:23:00,285 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.copy_xform" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform".
201113-00:23:00,293 nipype.workflow INFO:
[Node] Running "copy_xform" ("CPAC.utils.interfaces.utils.CopyXForm")
201113-00:23:06,295 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.copy_xform".
201113-00:23:06,297 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt".
201113-00:23:06,306 nipype.workflow INFO:
[Node] Running "Anatomical_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -omat sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.mat -applyisoxfm 2.000000
201113-00:23:10,99 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt".
201113-00:23:10,101 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt".
201113-00:23:10,112 nipype.workflow INFO:
[Node] Running "Anatomical_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -omat sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.mat -applyisoxfm 2.000000
201113-00:23:13,872 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt".
201113-00:23:13,874 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt".
201113-00:23:13,884 nipype.workflow INFO:
[Node] Running "Anatomical_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -omat sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.mat -applyisoxfm 2.000000
201113-00:23:17,664 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt".
201113-00:23:17,666 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt".
201113-00:23:17,675 nipype.workflow INFO:
[Node] Running "Anatomical_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -omat sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.mat -applyisoxfm 2.000000
201113-00:23:21,402 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt".
201113-00:23:21,404 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt".
201113-00:23:21,413 nipype.workflow INFO:
[Node] Running "Anatomical_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -omat sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.mat -applyisoxfm 2.000000
201113-00:23:25,182 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt".
201113-00:23:25,185 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt".
201113-00:23:25,197 nipype.workflow INFO:
[Node] Running "Anatomical_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -omat sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.mat -applyisoxfm 2.000000
201113-00:23:28,934 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt".
201113-00:23:28,935 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt".
201113-00:23:28,948 nipype.workflow INFO:
[Node] Running "Anatomical_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -omat sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.mat -applyisoxfm 2.000000
201113-00:23:32,672 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt".
201113-00:23:32,673 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt".
201113-00:23:32,684 nipype.workflow INFO:
[Node] Running "Anatomical_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -omat sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.mat -applyisoxfm 2.000000
201113-00:23:36,394 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt".
201113-00:23:36,396 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_FLIRT_0/_scan_tgng_run-3/linear_func_to_anat".
201113-00:23:36,435 nipype.workflow INFO:
[Node] Running "linear_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost corratio -dof 6 -interp trilinear
201113-00:23:45,685 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat".
201113-00:23:45,688 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_FLIRT_0/_scan_tgng_run-2/linear_func_to_anat".
201113-00:23:45,714 nipype.workflow INFO:
[Node] Running "linear_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost corratio -dof 6 -interp trilinear
201113-00:23:54,883 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat".
201113-00:23:54,884 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_FLIRT_0/_scan_tgng_run-1/linear_func_to_anat".
201113-00:23:54,911 nipype.workflow INFO:
[Node] Running "linear_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost corratio -dof 6 -interp trilinear
201113-00:24:04,197 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat".
201113-00:24:04,199 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_FLIRT_0/_scan_rest_run-1/linear_func_to_anat".
201113-00:24:04,233 nipype.workflow INFO:
[Node] Running "linear_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost corratio -dof 6 -interp trilinear
201113-00:24:15,156 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat".
201113-00:24:15,159 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_FLIRT_0/_scan_ms_run-1/linear_func_to_anat".
201113-00:24:15,191 nipype.workflow INFO:
[Node] Running "linear_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost corratio -dof 6 -interp trilinear
201113-00:24:24,292 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat".
201113-00:24:24,294 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_FLIRT_0/_scan_matching_run-3/linear_func_to_anat".
201113-00:24:24,330 nipype.workflow INFO:
[Node] Running "linear_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost corratio -dof 6 -interp trilinear
201113-00:24:33,438 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat".
201113-00:24:33,441 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_FLIRT_0/_scan_matching_run-2/linear_func_to_anat".
201113-00:24:33,473 nipype.workflow INFO:
[Node] Running "linear_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost corratio -dof 6 -interp trilinear
201113-00:24:42,567 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat".
201113-00:24:42,569 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_FLIRT_0/_scan_matching_run-1/linear_func_to_anat".
201113-00:24:42,596 nipype.workflow INFO:
[Node] Running "linear_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost corratio -dof 6 -interp trilinear
201113-00:24:51,868 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat".
201113-00:24:51,871 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_skullstrip_0.montage_skull.resample_u" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_skullstrip_0/montage_skull/resample_u".
201113-00:24:51,876 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:24:52,994 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_skullstrip_0.montage_skull.resample_u".
201113-00:24:52,996 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_skullstrip_0.montage_skull.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_skullstrip_0/montage_skull/montage_s".
201113-00:24:53,30 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_skullstrip_0/montage_skull/montage_s/mapflow/_montage_s0".
201113-00:24:53,35 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:24:56,37 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:24:56,41 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_skullstrip_0.montage_skull.montage_s".
201113-00:24:56,41 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___skullstrip_vis_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/sinker_0_qc___skullstrip_vis_s".
201113-00:24:56,50 nipype.workflow INFO:
[Node] Running "sinker_0_qc___skullstrip_vis_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:24:56,262 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___skullstrip_vis_s/_montage_s0/skull_vis_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/skullstrip_vis_s/_montage_s0/skull_vis_s.png
201113-00:24:56,280 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___skullstrip_vis_s".
201113-00:24:56,290 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_skullstrip_0.montage_skull.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_skullstrip_0/montage_skull/montage_a".
201113-00:24:56,298 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_skullstrip_0/montage_skull/montage_a/mapflow/_montage_a0".
201113-00:24:56,303 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:24:59,480 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:24:59,483 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_skullstrip_0.montage_skull.montage_a".
201113-00:24:59,484 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___skullstrip_vis_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/sinker_0_qc___skullstrip_vis_a".
201113-00:24:59,492 nipype.workflow INFO:
[Node] Running "sinker_0_qc___skullstrip_vis_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:24:59,704 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___skullstrip_vis_a/_montage_a0/skull_vis_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/skullstrip_vis_a/_montage_a0/skull_vis_a.png
201113-00:24:59,722 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___skullstrip_vis_a".
201113-00:24:59,724 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.resample_u" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/resample_u".
201113-00:24:59,730 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:25:00,831 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.resample_u".
201113-00:25:00,833 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_csf_gm_wm_0.resample_u" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_csf_gm_wm_0/resample_u".
201113-00:25:00,838 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:25:01,930 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_csf_gm_wm_0.resample_u".
201113-00:25:01,932 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.seg_preproc_0.segment" in "/outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/segment".
201113-00:25:01,939 nipype.workflow INFO:
[Node] Running "segment" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command:
fast -t 1 -o segment -p -g -S 1 /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/segment/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz
201113-00:30:07,935 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.seg_preproc_0.segment".
201113-00:30:07,938 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_to_anat_bbreg_0.wm_bb_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/wm_bb_mask".
201113-00:30:07,946 nipype.workflow INFO:
[Node] Running "wm_bb_mask" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/segment/segment_prob_2.nii.gz -thr 0.5 -bin /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz
201113-00:30:09,93 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_to_anat_bbreg_0.wm_bb_mask".
201113-00:30:09,95 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-3/bbreg_func_to_anat".
201113-00:30:09,104 nipype.workflow INFO:
[Node] Running "bbreg_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-181_ses-1_T1w_resample.nii.gz -out sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost bbr -wmseg /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz -dof 6 -init /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_FLIRT_0/_scan_tgng_run-3/linear_func_to_anat/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch
201113-00:32:10,820 nipype.interface INFO:
stdout 2020-11-13T00:32:10.820139:0.496361 0.999994 0.003360 -0.000421 0.000000 -0.003353 0.999876 0.015419 0.000000 0.000472 -0.015418 0.999881 0.000000 0.372799 1.035917 -0.398192 1.000000
201113-00:32:12,904 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat".
201113-00:32:12,906 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt".
201113-00:32:12,939 nipype.workflow INFO:
[Node] Running "Functional_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz -omat sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.mat -applyxfm -init /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-3/bbreg_func_to_anat/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:32:41,4 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt".
201113-00:32:41,6 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_tgng_run-3/resample_u".
201113-00:32:41,13 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:32:42,220 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.resample_u".
201113-00:32:42,222 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-3/std_dev_anat".
201113-00:32:42,248 nipype.workflow INFO:
[Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
applywarp --in=/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-3/std_dev/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz --ref=/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz --out=/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-3/std_dev_anat/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz --premat=/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-3/bbreg_func_to_anat/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat --interp=trilinear
201113-00:32:46,262 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev_anat".
201113-00:32:46,263 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-3/snr".
201113-00:32:46,270 nipype.workflow INFO:
[Node] Running "snr" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-3/std_dev_anat/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-3/bbreg_func_to_anat/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -expr "b/a" -prefix sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:32:46,527 nipype.interface INFO:
stderr 2020-11-13T00:32:46.527304:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:32:46,527 nipype.interface INFO:
stderr 2020-11-13T00:32:46.527799:++ Authored by: A cast of thousands
201113-00:32:48,623 nipype.interface INFO:
stderr 2020-11-13T00:32:48.623619:++ Output dataset ./sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:32:48,812 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.snr".
201113-00:32:48,813 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.dp_snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-3/dp_snr".
201113-00:32:48,819 nipype.workflow INFO:
[Node] Running "dp_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:32:49,779 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.dp_snr".
201113-00:32:49,781 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.resample_o" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-3/resample_o".
201113-00:32:49,786 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:32:50,889 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.resample_o".
201113-00:32:50,890 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-3/montage_s".
201113-00:32:50,897 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-3/montage_s/mapflow/_montage_s0".
201113-00:32:50,901 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:32:53,392 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:32:53,397 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_s".
201113-00:32:53,397 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_qc___snr_s".
201113-00:32:53,407 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:32:53,621 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_s/_scan_tgng_run-3/_montage_s0/snr_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_s/_scan_tgng_run-3/_montage_s0/snr_s.png
201113-00:32:53,643 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_s".
201113-00:32:53,669 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-3/montage_a".
201113-00:32:53,675 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-3/montage_a/mapflow/_montage_a0".
201113-00:32:53,680 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:32:56,396 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:32:56,399 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_a".
201113-00:32:56,400 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_qc___snr_a".
201113-00:32:56,407 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:32:56,621 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_a/_scan_tgng_run-3/_montage_a0/snr_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_a/_scan_tgng_run-3/_montage_a0/snr_a.png
201113-00:32:56,641 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_a".
201113-00:32:56,643 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.hist_snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-3/hist_snr".
201113-00:32:56,647 nipype.workflow INFO:
[Node] Running "hist_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:32:57,248 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.hist_snr".
201113-00:32:57,250 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_hist" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_qc___snr_hist".
201113-00:32:57,257 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_hist" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:32:57,469 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_hist/_scan_tgng_run-3/snr_hist_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_hist/_scan_tgng_run-3/snr_hist_plot.png
201113-00:32:57,491 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_hist".
201113-00:32:57,493 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.snr_val" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-3/snr_val".
201113-00:32:57,498 nipype.workflow INFO:
[Node] Running "snr_val" ("CPAC.utils.interfaces.function.Function")
201113-00:32:58,17 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.snr_val".
201113-00:32:58,18 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_val" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_qc___snr_val".
201113-00:32:58,26 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_val" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:32:58,240 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_val/_scan_tgng_run-3/average_snr_file.txt -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_val/_scan_tgng_run-3/average_snr_file.txt
201113-00:32:58,264 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_val".
201113-00:32:58,266 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_in_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_mean_functional_in_anat".
201113-00:32:58,274 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_in_anat" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:32:58,511 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_in_anat".
201113-00:32:58,513 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_anat_linear_xfm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_functional_to_anat_linear_xfm".
201113-00:32:58,521 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_anat_linear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:32:58,755 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_anat_linear_xfm".
201113-00:32:58,757 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_to_func_linear_xfm_0_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/anat_to_func_linear_xfm_0_0".
201113-00:32:58,764 nipype.workflow INFO:
[Node] Running "anat_to_func_linear_xfm_0_0" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/anat_to_func_linear_xfm_0_0/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt_inv.mat -inverse /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-3/bbreg_func_to_anat/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:32:59,272 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_to_func_linear_xfm_0_0".
201113-00:32:59,274 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.fsl_reg_2_itk_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/fsl_reg_2_itk_0".
201113-00:32:59,281 nipype.workflow INFO:
[Node] Running "fsl_reg_2_itk_0" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -src /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-3/bbreg_func_to_anat/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -fsl2ras -oitk /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/fsl_reg_2_itk_0/affine.txt
201113-00:33:00,33 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.fsl_reg_2_itk_0".
201113-00:33:00,34 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.change_transform_type_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/change_transform_type_0".
201113-00:33:00,39 nipype.workflow INFO:
[Node] Running "change_transform_type_0" ("nipype.interfaces.utility.wrappers.Function")
201113-00:33:00,275 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.change_transform_type_0".
201113-00:33:00,276 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-2/bbreg_func_to_anat".
201113-00:33:00,286 nipype.workflow INFO:
[Node] Running "bbreg_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-181_ses-1_T1w_resample.nii.gz -out sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost bbr -wmseg /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz -dof 6 -init /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_FLIRT_0/_scan_tgng_run-2/linear_func_to_anat/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch
201113-00:35:05,458 nipype.interface INFO:
stdout 2020-11-13T00:35:05.458785:0.492310 0.999986 0.005182 -0.001485 0.000000 -0.005158 0.999862 0.015772 0.000000 0.001566 -0.015764 0.999874 0.000000 0.496261 0.764707 -0.323192 1.000000
201113-00:35:07,546 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat".
201113-00:35:07,549 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt".
201113-00:35:07,579 nipype.workflow INFO:
[Node] Running "Functional_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz -omat sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.mat -applyxfm -init /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-2/bbreg_func_to_anat/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:35:35,709 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt".
201113-00:35:35,711 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_tgng_run-2/resample_u".
201113-00:35:35,717 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:35:36,919 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.resample_u".
201113-00:35:36,921 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-2/std_dev_anat".
201113-00:35:36,951 nipype.workflow INFO:
[Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
applywarp --in=/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-2/std_dev/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz --ref=/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz --out=/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-2/std_dev_anat/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz --premat=/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-2/bbreg_func_to_anat/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat --interp=trilinear
201113-00:35:40,934 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev_anat".
201113-00:35:40,936 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-2/snr".
201113-00:35:40,944 nipype.workflow INFO:
[Node] Running "snr" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-2/std_dev_anat/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-2/bbreg_func_to_anat/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -expr "b/a" -prefix sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:35:41,205 nipype.interface INFO:
stderr 2020-11-13T00:35:41.205745:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:35:41,206 nipype.interface INFO:
stderr 2020-11-13T00:35:41.206281:++ Authored by: A cast of thousands
201113-00:35:43,287 nipype.interface INFO:
stderr 2020-11-13T00:35:43.287408:++ Output dataset ./sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:35:43,496 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.snr".
201113-00:35:43,498 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.dp_snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-2/dp_snr".
201113-00:35:43,505 nipype.workflow INFO:
[Node] Running "dp_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:35:44,465 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.dp_snr".
201113-00:35:44,466 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.resample_o" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-2/resample_o".
201113-00:35:44,472 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:35:45,576 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.resample_o".
201113-00:35:45,578 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-2/montage_s".
201113-00:35:45,586 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-2/montage_s/mapflow/_montage_s0".
201113-00:35:45,591 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:35:48,42 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:35:48,46 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_s".
201113-00:35:48,46 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_qc___snr_s".
201113-00:35:48,55 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:35:48,272 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_s/_scan_tgng_run-2/_montage_s0/snr_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_s/_scan_tgng_run-2/_montage_s0/snr_s.png
201113-00:35:48,291 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_s".
201113-00:35:48,293 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-2/montage_a".
201113-00:35:48,300 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-2/montage_a/mapflow/_montage_a0".
201113-00:35:48,305 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:35:50,981 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:35:50,984 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_a".
201113-00:35:50,985 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_qc___snr_a".
201113-00:35:50,994 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:35:51,204 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_a/_scan_tgng_run-2/_montage_a0/snr_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_a/_scan_tgng_run-2/_montage_a0/snr_a.png
201113-00:35:51,226 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_a".
201113-00:35:51,228 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.hist_snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-2/hist_snr".
201113-00:35:51,233 nipype.workflow INFO:
[Node] Running "hist_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:35:51,830 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.hist_snr".
201113-00:35:51,832 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_hist" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_qc___snr_hist".
201113-00:35:51,839 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_hist" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:35:52,52 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_hist/_scan_tgng_run-2/snr_hist_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_hist/_scan_tgng_run-2/snr_hist_plot.png
201113-00:35:52,75 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_hist".
201113-00:35:52,76 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.snr_val" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-2/snr_val".
201113-00:35:52,81 nipype.workflow INFO:
[Node] Running "snr_val" ("CPAC.utils.interfaces.function.Function")
201113-00:35:52,603 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.snr_val".
201113-00:35:52,604 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_val" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_qc___snr_val".
201113-00:35:52,611 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_val" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:35:52,822 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_val/_scan_tgng_run-2/average_snr_file.txt -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_val/_scan_tgng_run-2/average_snr_file.txt
201113-00:35:52,846 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_val".
201113-00:35:52,849 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_in_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_mean_functional_in_anat".
201113-00:35:52,857 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_in_anat" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:35:53,94 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_in_anat".
201113-00:35:53,96 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_anat_linear_xfm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_functional_to_anat_linear_xfm".
201113-00:35:53,104 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_anat_linear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:35:53,338 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_anat_linear_xfm".
201113-00:35:53,341 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_to_func_linear_xfm_0_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/anat_to_func_linear_xfm_0_0".
201113-00:35:53,347 nipype.workflow INFO:
[Node] Running "anat_to_func_linear_xfm_0_0" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/anat_to_func_linear_xfm_0_0/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt_inv.mat -inverse /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-2/bbreg_func_to_anat/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:35:53,831 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_to_func_linear_xfm_0_0".
201113-00:35:53,833 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.fsl_reg_2_itk_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/fsl_reg_2_itk_0".
201113-00:35:53,840 nipype.workflow INFO:
[Node] Running "fsl_reg_2_itk_0" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -src /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-2/bbreg_func_to_anat/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -fsl2ras -oitk /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/fsl_reg_2_itk_0/affine.txt
201113-00:35:54,524 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.fsl_reg_2_itk_0".
201113-00:35:54,526 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.change_transform_type_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/change_transform_type_0".
201113-00:35:54,532 nipype.workflow INFO:
[Node] Running "change_transform_type_0" ("nipype.interfaces.utility.wrappers.Function")
201113-00:35:54,764 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.change_transform_type_0".
201113-00:35:54,766 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-1/bbreg_func_to_anat".
201113-00:35:54,776 nipype.workflow INFO:
[Node] Running "bbreg_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-181_ses-1_T1w_resample.nii.gz -out sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost bbr -wmseg /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz -dof 6 -init /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_FLIRT_0/_scan_tgng_run-1/linear_func_to_anat/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch
201113-00:37:56,674 nipype.interface INFO:
stdout 2020-11-13T00:37:56.674307:0.494324 0.999992 0.004032 0.000068 0.000000 -0.004033 0.999893 0.014031 0.000000 -0.000011 -0.014031 0.999902 0.000000 0.574612 0.745901 -0.275671 1.000000
201113-00:37:58,765 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat".
201113-00:37:58,768 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt".
201113-00:37:58,797 nipype.workflow INFO:
[Node] Running "Functional_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz -omat sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.mat -applyxfm -init /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-1/bbreg_func_to_anat/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:38:27,33 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt".
201113-00:38:27,35 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_tgng_run-1/resample_u".
201113-00:38:27,42 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:38:28,269 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.resample_u".
201113-00:38:28,271 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-1/std_dev_anat".
201113-00:38:28,308 nipype.workflow INFO:
[Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
applywarp --in=/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-1/std_dev/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz --ref=/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz --out=/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-1/std_dev_anat/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz --premat=/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-1/bbreg_func_to_anat/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat --interp=trilinear
201113-00:38:32,320 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev_anat".
201113-00:38:32,322 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-1/snr".
201113-00:38:32,329 nipype.workflow INFO:
[Node] Running "snr" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-1/std_dev_anat/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-1/bbreg_func_to_anat/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -expr "b/a" -prefix sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:38:32,589 nipype.interface INFO:
stderr 2020-11-13T00:38:32.589745:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:38:32,590 nipype.interface INFO:
stderr 2020-11-13T00:38:32.590252:++ Authored by: A cast of thousands
201113-00:38:34,684 nipype.interface INFO:
stderr 2020-11-13T00:38:34.684731:++ Output dataset ./sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:38:34,871 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.snr".
201113-00:38:34,873 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.dp_snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-1/dp_snr".
201113-00:38:34,879 nipype.workflow INFO:
[Node] Running "dp_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:38:35,832 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.dp_snr".
201113-00:38:35,833 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.resample_o" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-1/resample_o".
201113-00:38:35,839 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:38:36,936 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.resample_o".
201113-00:38:36,938 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-1/montage_s".
201113-00:38:36,945 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-1/montage_s/mapflow/_montage_s0".
201113-00:38:36,950 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:38:39,351 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:38:39,355 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_s".
201113-00:38:39,355 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_qc___snr_s".
201113-00:38:39,366 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:38:39,582 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_s/_scan_tgng_run-1/_montage_s0/snr_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_s/_scan_tgng_run-1/_montage_s0/snr_s.png
201113-00:38:39,604 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_s".
201113-00:38:39,605 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-1/montage_a".
201113-00:38:39,612 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-1/montage_a/mapflow/_montage_a0".
201113-00:38:39,617 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:38:42,273 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:38:42,276 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_a".
201113-00:38:42,276 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_qc___snr_a".
201113-00:38:42,284 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:38:42,499 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_a/_scan_tgng_run-1/_montage_a0/snr_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_a/_scan_tgng_run-1/_montage_a0/snr_a.png
201113-00:38:42,519 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_a".
201113-00:38:42,521 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.hist_snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-1/hist_snr".
201113-00:38:42,525 nipype.workflow INFO:
[Node] Running "hist_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:38:43,108 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.hist_snr".
201113-00:38:43,109 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_hist" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_qc___snr_hist".
201113-00:38:43,117 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_hist" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:38:43,329 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_hist/_scan_tgng_run-1/snr_hist_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_hist/_scan_tgng_run-1/snr_hist_plot.png
201113-00:38:43,355 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_hist".
201113-00:38:43,357 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.snr_val" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_tgng_run-1/snr_val".
201113-00:38:43,362 nipype.workflow INFO:
[Node] Running "snr_val" ("CPAC.utils.interfaces.function.Function")
201113-00:38:43,888 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.snr_val".
201113-00:38:43,890 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_val" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_qc___snr_val".
201113-00:38:43,897 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_val" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:38:44,111 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_val/_scan_tgng_run-1/average_snr_file.txt -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_val/_scan_tgng_run-1/average_snr_file.txt
201113-00:38:44,133 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_val".
201113-00:38:44,143 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_in_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_mean_functional_in_anat".
201113-00:38:44,152 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_in_anat" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:38:44,387 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_in_anat".
201113-00:38:44,389 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_anat_linear_xfm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_functional_to_anat_linear_xfm".
201113-00:38:44,397 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_anat_linear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:38:44,633 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_anat_linear_xfm".
201113-00:38:44,634 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_to_func_linear_xfm_0_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/anat_to_func_linear_xfm_0_0".
201113-00:38:44,640 nipype.workflow INFO:
[Node] Running "anat_to_func_linear_xfm_0_0" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/anat_to_func_linear_xfm_0_0/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt_inv.mat -inverse /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-1/bbreg_func_to_anat/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:38:45,123 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_to_func_linear_xfm_0_0".
201113-00:38:45,125 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.fsl_reg_2_itk_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/fsl_reg_2_itk_0".
201113-00:38:45,131 nipype.workflow INFO:
[Node] Running "fsl_reg_2_itk_0" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -src /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-1/bbreg_func_to_anat/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -fsl2ras -oitk /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/fsl_reg_2_itk_0/affine.txt
201113-00:38:45,816 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.fsl_reg_2_itk_0".
201113-00:38:45,819 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.change_transform_type_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/change_transform_type_0".
201113-00:38:45,824 nipype.workflow INFO:
[Node] Running "change_transform_type_0" ("nipype.interfaces.utility.wrappers.Function")
201113-00:38:46,54 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.change_transform_type_0".
201113-00:38:46,55 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_rest_run-1/bbreg_func_to_anat".
201113-00:38:46,81 nipype.workflow INFO:
[Node] Running "bbreg_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-181_ses-1_T1w_resample.nii.gz -out sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost bbr -wmseg /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz -dof 6 -init /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_FLIRT_0/_scan_rest_run-1/linear_func_to_anat/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch
201113-00:41:01,879 nipype.interface INFO:
stdout 2020-11-13T00:41:01.879109:0.577637 0.999922 0.010953 -0.006005 0.000000 -0.010851 0.999802 0.016672 0.000000 0.006187 -0.016605 0.999843 0.000000 0.576663 1.124165 1.142569 1.000000
201113-00:41:03,852 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat".
201113-00:41:03,855 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt".
201113-00:41:03,894 nipype.workflow INFO:
[Node] Running "Functional_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz -omat sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.mat -applyxfm -init /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_rest_run-1/bbreg_func_to_anat/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:41:39,729 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt".
201113-00:41:39,731 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_rest_run-1/resample_u".
201113-00:41:39,737 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:41:40,997 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.resample_u".
201113-00:41:40,999 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_rest_run-1/std_dev_anat".
201113-00:41:41,35 nipype.workflow INFO:
[Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
applywarp --in=/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_rest_run-1/std_dev/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz --ref=/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz --out=/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_rest_run-1/std_dev_anat/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz --premat=/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_rest_run-1/bbreg_func_to_anat/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat --interp=trilinear
201113-00:41:44,905 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev_anat".
201113-00:41:44,906 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_rest_run-1/snr".
201113-00:41:44,913 nipype.workflow INFO:
[Node] Running "snr" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_rest_run-1/std_dev_anat/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_rest_run-1/bbreg_func_to_anat/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -expr "b/a" -prefix sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:41:45,172 nipype.interface INFO:
stderr 2020-11-13T00:41:45.172539:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:41:45,173 nipype.interface INFO:
stderr 2020-11-13T00:41:45.173074:++ Authored by: A cast of thousands
201113-00:41:47,261 nipype.interface INFO:
stderr 2020-11-13T00:41:47.261392:++ Output dataset ./sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:41:47,465 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.snr".
201113-00:41:47,467 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.dp_snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_rest_run-1/dp_snr".
201113-00:41:47,472 nipype.workflow INFO:
[Node] Running "dp_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:41:48,403 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.dp_snr".
201113-00:41:48,404 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.resample_o" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_rest_run-1/resample_o".
201113-00:41:48,409 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:41:49,499 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.resample_o".
201113-00:41:49,501 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_rest_run-1/montage_s".
201113-00:41:49,509 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_rest_run-1/montage_s/mapflow/_montage_s0".
201113-00:41:49,514 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:41:51,904 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:41:51,908 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_s".
201113-00:41:51,908 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_qc___snr_s".
201113-00:41:51,918 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:41:52,130 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_s/_scan_rest_run-1/_montage_s0/snr_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_s/_scan_rest_run-1/_montage_s0/snr_s.png
201113-00:41:52,151 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_s".
201113-00:41:52,153 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_rest_run-1/montage_a".
201113-00:41:52,158 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_rest_run-1/montage_a/mapflow/_montage_a0".
201113-00:41:52,163 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:41:54,866 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:41:54,870 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_a".
201113-00:41:54,870 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_qc___snr_a".
201113-00:41:54,878 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:41:55,92 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_a/_scan_rest_run-1/_montage_a0/snr_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_a/_scan_rest_run-1/_montage_a0/snr_a.png
201113-00:41:55,114 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_a".
201113-00:41:55,116 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.hist_snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_rest_run-1/hist_snr".
201113-00:41:55,121 nipype.workflow INFO:
[Node] Running "hist_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:41:55,712 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.hist_snr".
201113-00:41:55,714 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_hist" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_qc___snr_hist".
201113-00:41:55,722 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_hist" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:41:55,933 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_hist/_scan_rest_run-1/snr_hist_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_hist/_scan_rest_run-1/snr_hist_plot.png
201113-00:41:55,955 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_hist".
201113-00:41:55,956 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.snr_val" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_rest_run-1/snr_val".
201113-00:41:55,961 nipype.workflow INFO:
[Node] Running "snr_val" ("CPAC.utils.interfaces.function.Function")
201113-00:41:56,487 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.snr_val".
201113-00:41:56,489 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_val" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_qc___snr_val".
201113-00:41:56,497 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_val" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:41:56,711 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_val/_scan_rest_run-1/average_snr_file.txt -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_val/_scan_rest_run-1/average_snr_file.txt
201113-00:41:56,735 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_val".
201113-00:41:56,737 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_in_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_mean_functional_in_anat".
201113-00:41:56,745 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_in_anat" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:41:56,982 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_in_anat".
201113-00:41:56,984 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_anat_linear_xfm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_functional_to_anat_linear_xfm".
201113-00:41:56,992 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_anat_linear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:41:57,227 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_anat_linear_xfm".
201113-00:41:57,229 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_to_func_linear_xfm_0_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/anat_to_func_linear_xfm_0_0".
201113-00:41:57,235 nipype.workflow INFO:
[Node] Running "anat_to_func_linear_xfm_0_0" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/anat_to_func_linear_xfm_0_0/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt_inv.mat -inverse /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_rest_run-1/bbreg_func_to_anat/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:41:57,717 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_to_func_linear_xfm_0_0".
201113-00:41:57,719 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.fsl_reg_2_itk_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/fsl_reg_2_itk_0".
201113-00:41:57,726 nipype.workflow INFO:
[Node] Running "fsl_reg_2_itk_0" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -src /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_rest_run-1/bbreg_func_to_anat/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -fsl2ras -oitk /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/fsl_reg_2_itk_0/affine.txt
201113-00:41:58,408 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.fsl_reg_2_itk_0".
201113-00:41:58,410 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.change_transform_type_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/change_transform_type_0".
201113-00:41:58,414 nipype.workflow INFO:
[Node] Running "change_transform_type_0" ("nipype.interfaces.utility.wrappers.Function")
201113-00:41:58,652 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.change_transform_type_0".
201113-00:41:58,654 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_ms_run-1/bbreg_func_to_anat".
201113-00:41:58,664 nipype.workflow INFO:
[Node] Running "bbreg_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-181_ses-1_T1w_resample.nii.gz -out sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost bbr -wmseg /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz -dof 6 -init /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_FLIRT_0/_scan_ms_run-1/linear_func_to_anat/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch
201113-00:44:04,847 nipype.interface INFO:
stdout 2020-11-13T00:44:04.847702:0.491708 0.999991 0.004181 -0.000307 0.000000 -0.004175 0.999840 0.017416 0.000000 0.000380 -0.017415 0.999848 0.000000 0.480687 1.241145 -0.737968 1.000000
201113-00:44:06,946 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat".
201113-00:44:06,948 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt".
201113-00:44:06,974 nipype.workflow INFO:
[Node] Running "Functional_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz -omat sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.mat -applyxfm -init /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_ms_run-1/bbreg_func_to_anat/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:44:37,712 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt".
201113-00:44:37,713 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_ms_run-1/resample_u".
201113-00:44:37,720 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:44:39,15 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.resample_u".
201113-00:44:39,17 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_ms_run-1/std_dev_anat".
201113-00:44:39,47 nipype.workflow INFO:
[Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
applywarp --in=/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_ms_run-1/std_dev/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz --ref=/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz --out=/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_ms_run-1/std_dev_anat/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz --premat=/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_ms_run-1/bbreg_func_to_anat/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat --interp=trilinear
201113-00:44:43,22 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev_anat".
201113-00:44:43,24 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_ms_run-1/snr".
201113-00:44:43,31 nipype.workflow INFO:
[Node] Running "snr" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_ms_run-1/std_dev_anat/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_ms_run-1/bbreg_func_to_anat/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -expr "b/a" -prefix sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:44:43,290 nipype.interface INFO:
stderr 2020-11-13T00:44:43.290640:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:44:43,291 nipype.interface INFO:
stderr 2020-11-13T00:44:43.291159:++ Authored by: A cast of thousands
201113-00:44:45,389 nipype.interface INFO:
stderr 2020-11-13T00:44:45.389275:++ Output dataset ./sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:44:45,578 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.snr".
201113-00:44:45,608 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.dp_snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_ms_run-1/dp_snr".
201113-00:44:45,613 nipype.workflow INFO:
[Node] Running "dp_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:44:46,561 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.dp_snr".
201113-00:44:46,563 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.resample_o" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_ms_run-1/resample_o".
201113-00:44:46,567 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:44:47,695 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.resample_o".
201113-00:44:47,696 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_ms_run-1/montage_s".
201113-00:44:47,703 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_ms_run-1/montage_s/mapflow/_montage_s0".
201113-00:44:47,707 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:44:50,34 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:44:50,38 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_s".
201113-00:44:50,39 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_qc___snr_s".
201113-00:44:50,48 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:44:50,261 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_s/_scan_ms_run-1/_montage_s0/snr_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_s/_scan_ms_run-1/_montage_s0/snr_s.png
201113-00:44:50,282 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_s".
201113-00:44:50,283 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_ms_run-1/montage_a".
201113-00:44:50,290 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_ms_run-1/montage_a/mapflow/_montage_a0".
201113-00:44:50,295 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:44:53,21 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:44:53,25 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_a".
201113-00:44:53,26 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_qc___snr_a".
201113-00:44:53,33 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:44:53,244 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_a/_scan_ms_run-1/_montage_a0/snr_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_a/_scan_ms_run-1/_montage_a0/snr_a.png
201113-00:44:53,265 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_a".
201113-00:44:53,267 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.hist_snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_ms_run-1/hist_snr".
201113-00:44:53,272 nipype.workflow INFO:
[Node] Running "hist_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:44:53,867 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.hist_snr".
201113-00:44:53,869 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_hist" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_qc___snr_hist".
201113-00:44:53,877 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_hist" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:44:54,89 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_hist/_scan_ms_run-1/snr_hist_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_hist/_scan_ms_run-1/snr_hist_plot.png
201113-00:44:54,109 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_hist".
201113-00:44:54,111 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.snr_val" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_ms_run-1/snr_val".
201113-00:44:54,115 nipype.workflow INFO:
[Node] Running "snr_val" ("CPAC.utils.interfaces.function.Function")
201113-00:44:54,636 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.snr_val".
201113-00:44:54,638 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_val" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_qc___snr_val".
201113-00:44:54,646 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_val" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:44:54,859 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_val/_scan_ms_run-1/average_snr_file.txt -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_val/_scan_ms_run-1/average_snr_file.txt
201113-00:44:54,880 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_val".
201113-00:44:54,882 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_in_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_mean_functional_in_anat".
201113-00:44:54,889 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_in_anat" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:44:55,125 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_in_anat".
201113-00:44:55,126 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_anat_linear_xfm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_functional_to_anat_linear_xfm".
201113-00:44:55,135 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_anat_linear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:44:55,373 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_anat_linear_xfm".
201113-00:44:55,375 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_to_func_linear_xfm_0_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/anat_to_func_linear_xfm_0_0".
201113-00:44:55,381 nipype.workflow INFO:
[Node] Running "anat_to_func_linear_xfm_0_0" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/anat_to_func_linear_xfm_0_0/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt_inv.mat -inverse /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_ms_run-1/bbreg_func_to_anat/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:44:55,863 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_to_func_linear_xfm_0_0".
201113-00:44:55,865 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.fsl_reg_2_itk_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/fsl_reg_2_itk_0".
201113-00:44:55,872 nipype.workflow INFO:
[Node] Running "fsl_reg_2_itk_0" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -src /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_ms_run-1/bbreg_func_to_anat/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -fsl2ras -oitk /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/fsl_reg_2_itk_0/affine.txt
201113-00:44:56,555 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.fsl_reg_2_itk_0".
201113-00:44:56,557 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.change_transform_type_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/change_transform_type_0".
201113-00:44:56,563 nipype.workflow INFO:
[Node] Running "change_transform_type_0" ("nipype.interfaces.utility.wrappers.Function")
201113-00:44:56,798 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.change_transform_type_0".
201113-00:44:56,800 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_matching_run-3/bbreg_func_to_anat".
201113-00:44:56,810 nipype.workflow INFO:
[Node] Running "bbreg_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-181_ses-1_T1w_resample.nii.gz -out sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost bbr -wmseg /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz -dof 6 -init /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_FLIRT_0/_scan_matching_run-3/linear_func_to_anat/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch
201113-00:46:58,687 nipype.interface INFO:
stdout 2020-11-13T00:46:58.687674:0.493110 0.999993 0.002668 0.002472 0.000000 -0.002708 0.999863 0.016322 0.000000 -0.002428 -0.016328 0.999864 0.000000 0.642660 1.194558 -0.888840 1.000000
201113-00:47:00,782 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat".
201113-00:47:00,784 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt".
201113-00:47:00,816 nipype.workflow INFO:
[Node] Running "Functional_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz -omat sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.mat -applyxfm -init /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_matching_run-3/bbreg_func_to_anat/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:47:22,326 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt".
201113-00:47:22,328 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_matching_run-3/resample_u".
201113-00:47:22,334 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:47:23,572 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.resample_u".
201113-00:47:23,574 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-3/std_dev_anat".
201113-00:47:23,596 nipype.workflow INFO:
[Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
applywarp --in=/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-3/std_dev/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz --ref=/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz --out=/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-3/std_dev_anat/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz --premat=/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_matching_run-3/bbreg_func_to_anat/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat --interp=trilinear
201113-00:47:27,582 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev_anat".
201113-00:47:27,584 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-3/snr".
201113-00:47:27,591 nipype.workflow INFO:
[Node] Running "snr" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-3/std_dev_anat/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_matching_run-3/bbreg_func_to_anat/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -expr "b/a" -prefix sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:47:27,852 nipype.interface INFO:
stderr 2020-11-13T00:47:27.852577:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:47:27,853 nipype.interface INFO:
stderr 2020-11-13T00:47:27.853083:++ Authored by: A cast of thousands
201113-00:47:29,952 nipype.interface INFO:
stderr 2020-11-13T00:47:29.952377:++ Output dataset ./sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:47:30,126 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.snr".
201113-00:47:30,128 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.dp_snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-3/dp_snr".
201113-00:47:30,134 nipype.workflow INFO:
[Node] Running "dp_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:47:31,69 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.dp_snr".
201113-00:47:31,71 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.resample_o" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_matching_run-3/resample_o".
201113-00:47:31,75 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:47:32,196 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.resample_o".
201113-00:47:32,198 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_matching_run-3/montage_s".
201113-00:47:32,205 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_matching_run-3/montage_s/mapflow/_montage_s0".
201113-00:47:32,210 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:47:34,633 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:47:34,636 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_s".
201113-00:47:34,637 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_qc___snr_s".
201113-00:47:34,646 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:47:34,859 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_s/_scan_matching_run-3/_montage_s0/snr_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_s/_scan_matching_run-3/_montage_s0/snr_s.png
201113-00:47:34,881 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_s".
201113-00:47:34,883 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_matching_run-3/montage_a".
201113-00:47:34,891 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_matching_run-3/montage_a/mapflow/_montage_a0".
201113-00:47:34,895 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:47:37,628 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:47:37,632 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_a".
201113-00:47:37,632 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_qc___snr_a".
201113-00:47:37,641 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:47:37,852 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_a/_scan_matching_run-3/_montage_a0/snr_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_a/_scan_matching_run-3/_montage_a0/snr_a.png
201113-00:47:37,869 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_a".
201113-00:47:37,871 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.hist_snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-3/hist_snr".
201113-00:47:37,875 nipype.workflow INFO:
[Node] Running "hist_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:47:38,436 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.hist_snr".
201113-00:47:38,438 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_hist" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_qc___snr_hist".
201113-00:47:38,445 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_hist" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:47:38,660 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_hist/_scan_matching_run-3/snr_hist_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_hist/_scan_matching_run-3/snr_hist_plot.png
201113-00:47:38,680 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_hist".
201113-00:47:38,681 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.snr_val" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-3/snr_val".
201113-00:47:38,686 nipype.workflow INFO:
[Node] Running "snr_val" ("CPAC.utils.interfaces.function.Function")
201113-00:47:39,201 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.snr_val".
201113-00:47:39,202 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_val" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_qc___snr_val".
201113-00:47:39,210 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_val" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:47:39,422 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_val/_scan_matching_run-3/average_snr_file.txt -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_val/_scan_matching_run-3/average_snr_file.txt
201113-00:47:39,444 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_val".
201113-00:47:39,446 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_in_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_mean_functional_in_anat".
201113-00:47:39,454 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_in_anat" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:47:39,692 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_in_anat".
201113-00:47:39,721 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_anat_linear_xfm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_functional_to_anat_linear_xfm".
201113-00:47:39,727 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_anat_linear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:47:39,961 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_anat_linear_xfm".
201113-00:47:39,963 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_to_func_linear_xfm_0_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/anat_to_func_linear_xfm_0_0".
201113-00:47:39,969 nipype.workflow INFO:
[Node] Running "anat_to_func_linear_xfm_0_0" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/anat_to_func_linear_xfm_0_0/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt_inv.mat -inverse /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_matching_run-3/bbreg_func_to_anat/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:47:40,445 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_to_func_linear_xfm_0_0".
201113-00:47:40,446 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.fsl_reg_2_itk_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/fsl_reg_2_itk_0".
201113-00:47:40,454 nipype.workflow INFO:
[Node] Running "fsl_reg_2_itk_0" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -src /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_matching_run-3/bbreg_func_to_anat/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -fsl2ras -oitk /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/fsl_reg_2_itk_0/affine.txt
201113-00:47:41,138 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.fsl_reg_2_itk_0".
201113-00:47:41,140 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.change_transform_type_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/change_transform_type_0".
201113-00:47:41,145 nipype.workflow INFO:
[Node] Running "change_transform_type_0" ("nipype.interfaces.utility.wrappers.Function")
201113-00:47:41,383 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.change_transform_type_0".
201113-00:47:41,384 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_matching_run-2/bbreg_func_to_anat".
201113-00:47:41,396 nipype.workflow INFO:
[Node] Running "bbreg_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-181_ses-1_T1w_resample.nii.gz -out sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost bbr -wmseg /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz -dof 6 -init /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_FLIRT_0/_scan_matching_run-2/linear_func_to_anat/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch
201113-00:49:46,936 nipype.interface INFO:
stdout 2020-11-13T00:49:46.936076:0.491887 0.999994 0.003546 0.000187 0.000000 -0.003548 0.999885 0.014747 0.000000 -0.000134 -0.014747 0.999891 0.000000 0.461599 0.890913 -0.425386 1.000000
201113-00:49:49,90 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat".
201113-00:49:49,93 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt".
201113-00:49:49,123 nipype.workflow INFO:
[Node] Running "Functional_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz -omat sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.mat -applyxfm -init /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_matching_run-2/bbreg_func_to_anat/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:50:10,665 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt".
201113-00:50:10,666 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_matching_run-2/resample_u".
201113-00:50:10,673 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:50:11,885 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.resample_u".
201113-00:50:11,886 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-2/std_dev_anat".
201113-00:50:11,909 nipype.workflow INFO:
[Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
applywarp --in=/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-2/std_dev/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz --ref=/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz --out=/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-2/std_dev_anat/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz --premat=/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_matching_run-2/bbreg_func_to_anat/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat --interp=trilinear
201113-00:50:15,922 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev_anat".
201113-00:50:15,923 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-2/snr".
201113-00:50:15,929 nipype.workflow INFO:
[Node] Running "snr" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-2/std_dev_anat/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_matching_run-2/bbreg_func_to_anat/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -expr "b/a" -prefix sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:50:16,186 nipype.interface INFO:
stderr 2020-11-13T00:50:16.186229:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:50:16,186 nipype.interface INFO:
stderr 2020-11-13T00:50:16.186686:++ Authored by: A cast of thousands
201113-00:50:18,282 nipype.interface INFO:
stderr 2020-11-13T00:50:18.282594:++ Output dataset ./sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:50:18,469 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.snr".
201113-00:50:18,471 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.dp_snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-2/dp_snr".
201113-00:50:18,475 nipype.workflow INFO:
[Node] Running "dp_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:50:19,440 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.dp_snr".
201113-00:50:19,441 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.resample_o" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_matching_run-2/resample_o".
201113-00:50:19,446 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:50:20,571 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.resample_o".
201113-00:50:20,573 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_matching_run-2/montage_s".
201113-00:50:20,580 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_matching_run-2/montage_s/mapflow/_montage_s0".
201113-00:50:20,585 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:50:22,997 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:50:23,1 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_s".
201113-00:50:23,2 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_qc___snr_s".
201113-00:50:23,10 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:50:23,221 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_s/_scan_matching_run-2/_montage_s0/snr_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_s/_scan_matching_run-2/_montage_s0/snr_s.png
201113-00:50:23,239 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_s".
201113-00:50:23,241 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_matching_run-2/montage_a".
201113-00:50:23,246 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_matching_run-2/montage_a/mapflow/_montage_a0".
201113-00:50:23,250 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:50:25,875 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:50:25,878 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_a".
201113-00:50:25,878 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_qc___snr_a".
201113-00:50:25,886 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:50:26,98 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_a/_scan_matching_run-2/_montage_a0/snr_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_a/_scan_matching_run-2/_montage_a0/snr_a.png
201113-00:50:26,118 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_a".
201113-00:50:26,120 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.hist_snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-2/hist_snr".
201113-00:50:26,125 nipype.workflow INFO:
[Node] Running "hist_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:50:26,689 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.hist_snr".
201113-00:50:26,712 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_hist" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_qc___snr_hist".
201113-00:50:26,720 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_hist" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:50:26,932 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_hist/_scan_matching_run-2/snr_hist_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_hist/_scan_matching_run-2/snr_hist_plot.png
201113-00:50:26,951 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_hist".
201113-00:50:26,952 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.snr_val" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-2/snr_val".
201113-00:50:26,956 nipype.workflow INFO:
[Node] Running "snr_val" ("CPAC.utils.interfaces.function.Function")
201113-00:50:27,472 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.snr_val".
201113-00:50:27,474 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_val" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_qc___snr_val".
201113-00:50:27,481 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_val" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:50:27,693 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_val/_scan_matching_run-2/average_snr_file.txt -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_val/_scan_matching_run-2/average_snr_file.txt
201113-00:50:27,717 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_val".
201113-00:50:27,719 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_in_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_mean_functional_in_anat".
201113-00:50:27,728 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_in_anat" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:50:27,964 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_in_anat".
201113-00:50:27,966 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_anat_linear_xfm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_functional_to_anat_linear_xfm".
201113-00:50:27,974 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_anat_linear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:50:28,212 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_anat_linear_xfm".
201113-00:50:28,214 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_to_func_linear_xfm_0_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/anat_to_func_linear_xfm_0_0".
201113-00:50:28,221 nipype.workflow INFO:
[Node] Running "anat_to_func_linear_xfm_0_0" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/anat_to_func_linear_xfm_0_0/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt_inv.mat -inverse /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_matching_run-2/bbreg_func_to_anat/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:50:28,703 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_to_func_linear_xfm_0_0".
201113-00:50:28,704 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.fsl_reg_2_itk_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/fsl_reg_2_itk_0".
201113-00:50:28,711 nipype.workflow INFO:
[Node] Running "fsl_reg_2_itk_0" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -src /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_matching_run-2/bbreg_func_to_anat/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -fsl2ras -oitk /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/fsl_reg_2_itk_0/affine.txt
201113-00:50:29,401 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.fsl_reg_2_itk_0".
201113-00:50:29,403 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.change_transform_type_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/change_transform_type_0".
201113-00:50:29,408 nipype.workflow INFO:
[Node] Running "change_transform_type_0" ("nipype.interfaces.utility.wrappers.Function")
201113-00:50:29,644 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.change_transform_type_0".
201113-00:50:29,645 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_matching_run-1/bbreg_func_to_anat".
201113-00:50:29,656 nipype.workflow INFO:
[Node] Running "bbreg_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-181_ses-1_T1w_resample.nii.gz -out sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost bbr -wmseg /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz -dof 6 -init /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_FLIRT_0/_scan_matching_run-1/linear_func_to_anat/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch
201113-00:52:33,577 nipype.interface INFO:
stdout 2020-11-13T00:52:33.577427:0.494896 0.999995 0.002643 0.001827 0.000000 -0.002669 0.999894 0.014333 0.000000 -0.001789 -0.014338 0.999896 0.000000 0.620426 0.848644 -0.451296 1.000000
201113-00:52:35,665 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat".
201113-00:52:35,667 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt".
201113-00:52:35,707 nipype.workflow INFO:
[Node] Running "Functional_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz -omat sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.mat -applyxfm -init /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_matching_run-1/bbreg_func_to_anat/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:52:57,78 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt".
201113-00:52:57,80 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_matching_run-1/resample_u".
201113-00:52:57,86 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:52:58,304 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.resample_u".
201113-00:52:58,305 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-1/std_dev_anat".
201113-00:52:58,343 nipype.workflow INFO:
[Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
applywarp --in=/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-1/std_dev/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz --ref=/outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz --out=/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-1/std_dev_anat/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz --premat=/outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_matching_run-1/bbreg_func_to_anat/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat --interp=trilinear
201113-00:53:02,326 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.std_dev_anat".
201113-00:53:02,328 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-1/snr".
201113-00:53:02,335 nipype.workflow INFO:
[Node] Running "snr" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-1/std_dev_anat/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_matching_run-1/bbreg_func_to_anat/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -expr "b/a" -prefix sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:53:02,597 nipype.interface INFO:
stderr 2020-11-13T00:53:02.597207:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:53:02,597 nipype.interface INFO:
stderr 2020-11-13T00:53:02.597699:++ Authored by: A cast of thousands
201113-00:53:04,704 nipype.interface INFO:
stderr 2020-11-13T00:53:04.704269:++ Output dataset ./sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:53:04,879 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.snr".
201113-00:53:04,881 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.dp_snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-1/dp_snr".
201113-00:53:04,886 nipype.workflow INFO:
[Node] Running "dp_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:53:05,833 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.dp_snr".
201113-00:53:05,834 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.resample_o" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_matching_run-1/resample_o".
201113-00:53:05,839 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:53:06,954 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.resample_o".
201113-00:53:06,955 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_matching_run-1/montage_s".
201113-00:53:06,962 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_matching_run-1/montage_s/mapflow/_montage_s0".
201113-00:53:06,966 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:53:09,377 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:53:09,381 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_s".
201113-00:53:09,381 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_qc___snr_s".
201113-00:53:09,389 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:53:09,603 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_s/_scan_matching_run-1/_montage_s0/snr_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_s/_scan_matching_run-1/_montage_s0/snr_s.png
201113-00:53:09,623 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_s".
201113-00:53:09,625 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_matching_run-1/montage_a".
201113-00:53:09,632 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/montage_snr/_scan_matching_run-1/montage_a/mapflow/_montage_a0".
201113-00:53:09,636 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:53:12,346 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:53:12,349 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.montage_snr.montage_a".
201113-00:53:12,350 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_qc___snr_a".
201113-00:53:12,357 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:53:12,571 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_a/_scan_matching_run-1/_montage_a0/snr_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_a/_scan_matching_run-1/_montage_a0/snr_a.png
201113-00:53:12,591 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_a".
201113-00:53:12,592 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.hist_snr" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-1/hist_snr".
201113-00:53:12,596 nipype.workflow INFO:
[Node] Running "hist_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:53:13,175 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.hist_snr".
201113-00:53:13,177 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_hist" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_qc___snr_hist".
201113-00:53:13,184 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_hist" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:53:13,397 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_hist/_scan_matching_run-1/snr_hist_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_hist/_scan_matching_run-1/snr_hist_plot.png
201113-00:53:13,420 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_hist".
201113-00:53:13,422 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.qc_snr_0.snr_val" in "/outputs/tmp/resting_preproc_sub-181_ses-1/qc_snr_0/_scan_matching_run-1/snr_val".
201113-00:53:13,427 nipype.workflow INFO:
[Node] Running "snr_val" ("CPAC.utils.interfaces.function.Function")
201113-00:53:13,957 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.qc_snr_0.snr_val".
201113-00:53:13,959 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_val" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_qc___snr_val".
201113-00:53:13,966 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_val" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:53:14,179 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___snr_val/_scan_matching_run-1/average_snr_file.txt -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/snr_val/_scan_matching_run-1/average_snr_file.txt
201113-00:53:14,201 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___snr_val".
201113-00:53:14,203 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_in_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_mean_functional_in_anat".
201113-00:53:14,210 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_in_anat" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:53:14,444 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_in_anat".
201113-00:53:14,446 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_anat_linear_xfm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_functional_to_anat_linear_xfm".
201113-00:53:14,454 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_anat_linear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:53:14,691 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_anat_linear_xfm".
201113-00:53:14,693 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_to_func_linear_xfm_0_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/anat_to_func_linear_xfm_0_0".
201113-00:53:14,699 nipype.workflow INFO:
[Node] Running "anat_to_func_linear_xfm_0_0" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/anat_to_func_linear_xfm_0_0/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt_inv.mat -inverse /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_matching_run-1/bbreg_func_to_anat/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:53:15,184 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_to_func_linear_xfm_0_0".
201113-00:53:15,186 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.fsl_reg_2_itk_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/fsl_reg_2_itk_0".
201113-00:53:15,193 nipype.workflow INFO:
[Node] Running "fsl_reg_2_itk_0" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz -src /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-1/func_to_anat_bbreg_0/_scan_matching_run-1/bbreg_func_to_anat/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -fsl2ras -oitk /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/fsl_reg_2_itk_0/affine.txt
201113-00:53:15,880 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.fsl_reg_2_itk_0".
201113-00:53:15,882 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.change_transform_type_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/change_transform_type_0".
201113-00:53:15,887 nipype.workflow INFO:
[Node] Running "change_transform_type_0" ("nipype.interfaces.utility.wrappers.Function")
201113-00:53:16,123 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.change_transform_type_0".
201113-00:53:16,124 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_seg_probability_maps" in "/outputs/tmp/resting_preproc_sub-181_ses-1/sinker_0_seg_probability_maps".
201113-00:53:16,131 nipype.workflow INFO:
[Node] Running "sinker_0_seg_probability_maps" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:53:16,367 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_seg_probability_maps".
201113-00:53:16,370 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_seg_partial_volume_map" in "/outputs/tmp/resting_preproc_sub-181_ses-1/sinker_0_seg_partial_volume_map".
201113-00:53:16,378 nipype.workflow INFO:
[Node] Running "sinker_0_seg_partial_volume_map" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:53:16,615 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_seg_partial_volume_map".
201113-00:53:16,616 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_seg_partial_volume_files" in "/outputs/tmp/resting_preproc_sub-181_ses-1/sinker_0_seg_partial_volume_files".
201113-00:53:16,624 nipype.workflow INFO:
[Node] Running "sinker_0_seg_partial_volume_files" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:53:16,862 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_seg_partial_volume_files".
201113-00:53:16,864 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_seg_mixeltype" in "/outputs/tmp/resting_preproc_sub-181_ses-1/sinker_0_seg_mixeltype".
201113-00:53:16,872 nipype.workflow INFO:
[Node] Running "sinker_0_seg_mixeltype" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:53:17,106 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_seg_mixeltype".
201113-00:53:17,108 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.seg_preproc_0.GM.threshold_segmentmap_GM" in "/outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/GM/threshold_segmentmap_GM".
201113-00:53:17,116 nipype.workflow INFO:
[Node] Running "threshold_segmentmap_GM" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/segment/segment_prob_1.nii.gz -thr 0.950000 /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/GM/threshold_segmentmap_GM/segment_prob_1_maths.nii.gz
201113-00:53:18,358 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.seg_preproc_0.GM.threshold_segmentmap_GM".
201113-00:53:18,360 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.seg_preproc_0.GM.binarize_GM" in "/outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/GM/binarize_GM".
201113-00:53:18,366 nipype.workflow INFO:
[Node] Running "binarize_GM" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/GM/threshold_segmentmap_GM/segment_prob_1_maths.nii.gz -bin /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/GM/binarize_GM/segment_prob_1_maths_maths.nii.gz
201113-00:53:19,493 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.seg_preproc_0.GM.binarize_GM".
201113-00:53:19,495 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_csf_gm_wm_0.resample_o_gm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_csf_gm_wm_0/resample_o_gm".
201113-00:53:19,499 nipype.workflow INFO:
[Node] Running "resample_o_gm" ("CPAC.utils.interfaces.function.Function")
201113-00:53:20,468 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_csf_gm_wm_0.resample_o_gm".
201113-00:53:20,470 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_anatomical_gm_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/sinker_0_anatomical_gm_mask".
201113-00:53:20,478 nipype.workflow INFO:
[Node] Running "sinker_0_anatomical_gm_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:53:20,713 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_anatomical_gm_mask".
201113-00:53:20,715 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.seg_preproc_0.WM.threshold_segmentmap_WM" in "/outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/WM/threshold_segmentmap_WM".
201113-00:53:20,721 nipype.workflow INFO:
[Node] Running "threshold_segmentmap_WM" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/segment/segment_prob_2.nii.gz -thr 0.950000 /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/WM/threshold_segmentmap_WM/segment_prob_2_maths.nii.gz
201113-00:53:21,930 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.seg_preproc_0.WM.threshold_segmentmap_WM".
201113-00:53:21,932 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.seg_preproc_0.WM.binarize_WM" in "/outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/WM/binarize_WM".
201113-00:53:21,937 nipype.workflow INFO:
[Node] Running "binarize_WM" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/WM/threshold_segmentmap_WM/segment_prob_2_maths.nii.gz -bin /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/WM/binarize_WM/segment_prob_2_maths_maths.nii.gz
201113-00:53:22,988 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.seg_preproc_0.WM.binarize_WM".
201113-00:53:22,990 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.seg_preproc_0.WM.erode_skullstrip_mask_WM" in "/outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/WM/erode_skullstrip_mask_WM".
201113-00:53:23,24 nipype.workflow INFO:
[Node] Running "erode_skullstrip_mask_WM" ("nipype.interfaces.utility.wrappers.Function")
201113-00:53:28,543 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.seg_preproc_0.WM.erode_skullstrip_mask_WM".
201113-00:53:28,545 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.seg_preproc_0.WM.erosion_segmentmap_WM" in "/outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM".
201113-00:53:28,549 nipype.workflow INFO:
[Node] Running "erosion_segmentmap_WM" ("nipype.interfaces.utility.wrappers.Function")
201113-00:53:29,935 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.seg_preproc_0.WM.erosion_segmentmap_WM".
201113-00:53:29,936 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_2mm_flirt".
201113-00:53:29,946 nipype.workflow INFO:
[Node] Running "WhiteMatter_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:53:30,791 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt".
201113-00:53:30,793 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_merge_masks".
201113-00:53:30,799 nipype.workflow INFO:
[Node] Running "WhiteMatter_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:53:31,35 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks".
201113-00:53:31,37 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks".
201113-00:53:31,45 nipype.workflow INFO:
[Node] Running "WhiteMatter_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:53:31,313 nipype.interface INFO:
stderr 2020-11-13T00:53:31.313258:++ no -frac option: defaulting to -union
201113-00:53:31,313 nipype.interface INFO:
stderr 2020-11-13T00:53:31.313893:++ processing 1 input dataset(s), NN=2...
201113-00:53:31,314 nipype.interface INFO:
stderr 2020-11-13T00:53:31.314143:++ padding all datasets by 0 (for dilations)
201113-00:53:31,353 nipype.interface INFO:
stderr 2020-11-13T00:53:31.353567:++ frac 0 over 1 volumes gives min count 0
201113-00:53:31,355 nipype.interface INFO:
stderr 2020-11-13T00:53:31.355402:++ voxel limits: 0 clipped, 8733 survived, 1547747 were zero
201113-00:53:31,355 nipype.interface INFO:
stderr 2020-11-13T00:53:31.355586:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:53:31,375 nipype.interface INFO:
stderr 2020-11-13T00:53:31.375784:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:53:31,558 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks".
201113-00:53:31,560 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_mean".
201113-00:53:31,566 nipype.workflow INFO:
[Node] Running "WhiteMatter_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:53:35,574 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_mean".
201113-00:53:35,576 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_2mm_flirt".
201113-00:53:35,584 nipype.workflow INFO:
[Node] Running "WhiteMatter_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:53:36,409 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt".
201113-00:53:36,411 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_merge_masks".
201113-00:53:36,418 nipype.workflow INFO:
[Node] Running "WhiteMatter_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:53:36,653 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks".
201113-00:53:36,654 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks".
201113-00:53:36,661 nipype.workflow INFO:
[Node] Running "WhiteMatter_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:53:36,930 nipype.interface INFO:
stderr 2020-11-13T00:53:36.929853:++ no -frac option: defaulting to -union
201113-00:53:36,930 nipype.interface INFO:
stderr 2020-11-13T00:53:36.930865:++ processing 1 input dataset(s), NN=2...
201113-00:53:36,931 nipype.interface INFO:
stderr 2020-11-13T00:53:36.931128:++ padding all datasets by 0 (for dilations)
201113-00:53:36,969 nipype.interface INFO:
stderr 2020-11-13T00:53:36.969459:++ frac 0 over 1 volumes gives min count 0
201113-00:53:36,971 nipype.interface INFO:
stderr 2020-11-13T00:53:36.971279:++ voxel limits: 0 clipped, 8733 survived, 1547747 were zero
201113-00:53:36,971 nipype.interface INFO:
stderr 2020-11-13T00:53:36.971455:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:53:36,991 nipype.interface INFO:
stderr 2020-11-13T00:53:36.991378:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:53:37,181 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks".
201113-00:53:37,183 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_mean".
201113-00:53:37,190 nipype.workflow INFO:
[Node] Running "WhiteMatter_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:53:41,318 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_mean".
201113-00:53:41,320 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_2mm_flirt".
201113-00:53:41,326 nipype.workflow INFO:
[Node] Running "WhiteMatter_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:53:42,145 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt".
201113-00:53:42,147 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_merge_masks".
201113-00:53:42,152 nipype.workflow INFO:
[Node] Running "WhiteMatter_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:53:42,385 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks".
201113-00:53:42,387 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks".
201113-00:53:42,393 nipype.workflow INFO:
[Node] Running "WhiteMatter_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:53:42,660 nipype.interface INFO:
stderr 2020-11-13T00:53:42.660761:++ no -frac option: defaulting to -union
201113-00:53:42,661 nipype.interface INFO:
stderr 2020-11-13T00:53:42.661634:++ processing 1 input dataset(s), NN=2...
201113-00:53:42,661 nipype.interface INFO:
stderr 2020-11-13T00:53:42.661881:++ padding all datasets by 0 (for dilations)
201113-00:53:42,702 nipype.interface INFO:
stderr 2020-11-13T00:53:42.702635:++ frac 0 over 1 volumes gives min count 0
201113-00:53:42,704 nipype.interface INFO:
stderr 2020-11-13T00:53:42.704557:++ voxel limits: 0 clipped, 8733 survived, 1547747 were zero
201113-00:53:42,704 nipype.interface INFO:
stderr 2020-11-13T00:53:42.704733:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:53:42,724 nipype.interface INFO:
stderr 2020-11-13T00:53:42.724455:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:53:42,914 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks".
201113-00:53:42,916 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_mean".
201113-00:53:42,923 nipype.workflow INFO:
[Node] Running "WhiteMatter_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:53:46,944 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_mean".
201113-00:53:46,946 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_2mm_flirt".
201113-00:53:46,954 nipype.workflow INFO:
[Node] Running "WhiteMatter_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:53:47,774 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt".
201113-00:53:47,775 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_merge_masks".
201113-00:53:47,780 nipype.workflow INFO:
[Node] Running "WhiteMatter_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:53:48,14 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks".
201113-00:53:48,15 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks".
201113-00:53:48,21 nipype.workflow INFO:
[Node] Running "WhiteMatter_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:53:48,290 nipype.interface INFO:
stderr 2020-11-13T00:53:48.289897:++ no -frac option: defaulting to -union
201113-00:53:48,291 nipype.interface INFO:
stderr 2020-11-13T00:53:48.291023:++ processing 1 input dataset(s), NN=2...
201113-00:53:48,291 nipype.interface INFO:
stderr 2020-11-13T00:53:48.291277:++ padding all datasets by 0 (for dilations)
201113-00:53:48,332 nipype.interface INFO:
stderr 2020-11-13T00:53:48.332453:++ frac 0 over 1 volumes gives min count 0
201113-00:53:48,334 nipype.interface INFO:
stderr 2020-11-13T00:53:48.334258:++ voxel limits: 0 clipped, 8733 survived, 1547747 were zero
201113-00:53:48,334 nipype.interface INFO:
stderr 2020-11-13T00:53:48.334465:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:53:48,354 nipype.interface INFO:
stderr 2020-11-13T00:53:48.354530:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:53:48,548 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks".
201113-00:53:48,551 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_mean".
201113-00:53:48,558 nipype.workflow INFO:
[Node] Running "WhiteMatter_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:53:54,235 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_mean".
201113-00:53:54,238 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_2mm_flirt".
201113-00:53:54,246 nipype.workflow INFO:
[Node] Running "WhiteMatter_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:53:55,72 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt".
201113-00:53:55,73 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_merge_masks".
201113-00:53:55,78 nipype.workflow INFO:
[Node] Running "WhiteMatter_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:53:55,313 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks".
201113-00:53:55,314 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks".
201113-00:53:55,321 nipype.workflow INFO:
[Node] Running "WhiteMatter_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:53:55,587 nipype.interface INFO:
stderr 2020-11-13T00:53:55.587542:++ no -frac option: defaulting to -union
201113-00:53:55,588 nipype.interface INFO:
stderr 2020-11-13T00:53:55.588322:++ processing 1 input dataset(s), NN=2...
201113-00:53:55,588 nipype.interface INFO:
stderr 2020-11-13T00:53:55.588522:++ padding all datasets by 0 (for dilations)
201113-00:53:55,627 nipype.interface INFO:
stderr 2020-11-13T00:53:55.627690:++ frac 0 over 1 volumes gives min count 0
201113-00:53:55,629 nipype.interface INFO:
stderr 2020-11-13T00:53:55.629835:++ voxel limits: 0 clipped, 8733 survived, 1547747 were zero
201113-00:53:55,630 nipype.interface INFO:
stderr 2020-11-13T00:53:55.630020:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:53:55,650 nipype.interface INFO:
stderr 2020-11-13T00:53:55.650101:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:53:55,845 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks".
201113-00:53:55,846 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_mean".
201113-00:53:55,854 nipype.workflow INFO:
[Node] Running "WhiteMatter_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:54:02,675 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_mean".
201113-00:54:02,677 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_2mm_flirt".
201113-00:54:02,685 nipype.workflow INFO:
[Node] Running "WhiteMatter_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:54:03,515 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt".
201113-00:54:03,516 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_merge_masks".
201113-00:54:03,521 nipype.workflow INFO:
[Node] Running "WhiteMatter_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:54:03,755 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks".
201113-00:54:03,756 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks".
201113-00:54:03,762 nipype.workflow INFO:
[Node] Running "WhiteMatter_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:54:04,29 nipype.interface INFO:
stderr 2020-11-13T00:54:04.029800:++ no -frac option: defaulting to -union
201113-00:54:04,30 nipype.interface INFO:
stderr 2020-11-13T00:54:04.030653:++ processing 1 input dataset(s), NN=2...
201113-00:54:04,30 nipype.interface INFO:
stderr 2020-11-13T00:54:04.030904:++ padding all datasets by 0 (for dilations)
201113-00:54:04,69 nipype.interface INFO:
stderr 2020-11-13T00:54:04.069564:++ frac 0 over 1 volumes gives min count 0
201113-00:54:04,71 nipype.interface INFO:
stderr 2020-11-13T00:54:04.071356:++ voxel limits: 0 clipped, 8733 survived, 1547747 were zero
201113-00:54:04,71 nipype.interface INFO:
stderr 2020-11-13T00:54:04.071534:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:54:04,91 nipype.interface INFO:
stderr 2020-11-13T00:54:04.091506:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:54:04,273 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks".
201113-00:54:04,275 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_mean".
201113-00:54:04,285 nipype.workflow INFO:
[Node] Running "WhiteMatter_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:54:09,420 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_mean".
201113-00:54:09,422 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_2mm_flirt".
201113-00:54:09,429 nipype.workflow INFO:
[Node] Running "WhiteMatter_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:54:10,262 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt".
201113-00:54:10,264 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_merge_masks".
201113-00:54:10,269 nipype.workflow INFO:
[Node] Running "WhiteMatter_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:54:10,502 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks".
201113-00:54:10,503 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks".
201113-00:54:10,510 nipype.workflow INFO:
[Node] Running "WhiteMatter_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:54:10,774 nipype.interface INFO:
stderr 2020-11-13T00:54:10.774040:++ no -frac option: defaulting to -union
201113-00:54:10,774 nipype.interface INFO:
stderr 2020-11-13T00:54:10.774638:++ processing 1 input dataset(s), NN=2...
201113-00:54:10,774 nipype.interface INFO:
stderr 2020-11-13T00:54:10.774853:++ padding all datasets by 0 (for dilations)
201113-00:54:10,815 nipype.interface INFO:
stderr 2020-11-13T00:54:10.815608:++ frac 0 over 1 volumes gives min count 0
201113-00:54:10,817 nipype.interface INFO:
stderr 2020-11-13T00:54:10.817413:++ voxel limits: 0 clipped, 8733 survived, 1547747 were zero
201113-00:54:10,817 nipype.interface INFO:
stderr 2020-11-13T00:54:10.817589:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:54:10,839 nipype.interface INFO:
stderr 2020-11-13T00:54:10.839448:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:54:11,24 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks".
201113-00:54:11,25 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_mean".
201113-00:54:11,33 nipype.workflow INFO:
[Node] Running "WhiteMatter_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:54:16,73 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_mean".
201113-00:54:16,105 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_2mm_flirt".
201113-00:54:16,141 nipype.workflow INFO:
[Node] Running "WhiteMatter_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:54:16,963 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt".
201113-00:54:16,964 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_merge_masks".
201113-00:54:16,969 nipype.workflow INFO:
[Node] Running "WhiteMatter_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:54:17,202 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks".
201113-00:54:17,203 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks".
201113-00:54:17,210 nipype.workflow INFO:
[Node] Running "WhiteMatter_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:54:17,478 nipype.interface INFO:
stderr 2020-11-13T00:54:17.477878:++ no -frac option: defaulting to -union
201113-00:54:17,478 nipype.interface INFO:
stderr 2020-11-13T00:54:17.478848:++ processing 1 input dataset(s), NN=2...
201113-00:54:17,479 nipype.interface INFO:
stderr 2020-11-13T00:54:17.479161:++ padding all datasets by 0 (for dilations)
201113-00:54:17,520 nipype.interface INFO:
stderr 2020-11-13T00:54:17.520616:++ frac 0 over 1 volumes gives min count 0
201113-00:54:17,522 nipype.interface INFO:
stderr 2020-11-13T00:54:17.522413:++ voxel limits: 0 clipped, 8733 survived, 1547747 were zero
201113-00:54:17,522 nipype.interface INFO:
stderr 2020-11-13T00:54:17.522617:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:54:17,541 nipype.interface INFO:
stderr 2020-11-13T00:54:17.541273:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:54:17,735 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks".
201113-00:54:17,737 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_mean".
201113-00:54:17,744 nipype.workflow INFO:
[Node] Running "WhiteMatter_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:54:22,841 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.WhiteMatter_mean".
201113-00:54:22,843 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_csf_gm_wm_0.resample_o_wm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_csf_gm_wm_0/resample_o_wm".
201113-00:54:22,848 nipype.workflow INFO:
[Node] Running "resample_o_wm" ("CPAC.utils.interfaces.function.Function")
201113-00:54:23,655 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_csf_gm_wm_0.resample_o_wm".
201113-00:54:23,657 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_anatomical_wm_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/sinker_0_anatomical_wm_mask".
201113-00:54:23,665 nipype.workflow INFO:
[Node] Running "sinker_0_anatomical_wm_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:54:23,903 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_anatomical_wm_mask".
201113-00:54:23,905 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.seg_preproc_0.CSF.threshold_segmentmap_CSF" in "/outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/CSF/threshold_segmentmap_CSF".
201113-00:54:23,912 nipype.workflow INFO:
[Node] Running "threshold_segmentmap_CSF" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/segment/segment_prob_0.nii.gz -thr 0.950000 /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/CSF/threshold_segmentmap_CSF/segment_prob_0_maths.nii.gz
201113-00:54:25,75 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.seg_preproc_0.CSF.threshold_segmentmap_CSF".
201113-00:54:25,76 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.seg_preproc_0.CSF.binarize_CSF" in "/outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/CSF/binarize_CSF".
201113-00:54:25,82 nipype.workflow INFO:
[Node] Running "binarize_CSF" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/CSF/threshold_segmentmap_CSF/segment_prob_0_maths.nii.gz -bin /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/CSF/binarize_CSF/segment_prob_0_maths_maths.nii.gz
201113-00:54:26,102 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.seg_preproc_0.CSF.binarize_CSF".
201113-00:54:26,104 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.erode_skullstrip_brain_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/erode_skullstrip_brain_mask".
201113-00:54:26,110 nipype.workflow INFO:
[Node] Running "erode_skullstrip_brain_mask" ("nipype.interfaces.utility.wrappers.Function")
201113-00:54:27,744 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.erode_skullstrip_brain_mask".
201113-00:54:27,745 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.seg_preproc_0.CSF.erode_skullstrip_mask_CSF" in "/outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/CSF/erode_skullstrip_mask_CSF".
201113-00:54:27,751 nipype.workflow INFO:
[Node] Running "erode_skullstrip_mask_CSF" ("nipype.interfaces.utility.wrappers.Function")
201113-00:54:29,444 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.seg_preproc_0.CSF.erode_skullstrip_mask_CSF".
201113-00:54:29,446 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.seg_preproc_0.CSF.erosion_segmentmap_CSF" in "/outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF".
201113-00:54:29,451 nipype.workflow INFO:
[Node] Running "erosion_segmentmap_CSF" ("nipype.interfaces.utility.wrappers.Function")
201113-00:54:30,34 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.seg_preproc_0.CSF.erosion_segmentmap_CSF".
201113-00:54:30,36 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_2mm_flirt".
201113-00:54:30,44 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:54:30,885 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt".
201113-00:54:30,887 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_merge_masks".
201113-00:54:30,892 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:54:31,121 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks".
201113-00:54:31,144 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks".
201113-00:54:31,150 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:54:31,416 nipype.interface INFO:
stderr 2020-11-13T00:54:31.416216:++ no -frac option: defaulting to -union
201113-00:54:31,416 nipype.interface INFO:
stderr 2020-11-13T00:54:31.416762:++ processing 1 input dataset(s), NN=2...
201113-00:54:31,417 nipype.interface INFO:
stderr 2020-11-13T00:54:31.417280:++ padding all datasets by 0 (for dilations)
201113-00:54:31,455 nipype.interface INFO:
stderr 2020-11-13T00:54:31.455800:++ frac 0 over 1 volumes gives min count 0
201113-00:54:31,457 nipype.interface INFO:
stderr 2020-11-13T00:54:31.457426:++ voxel limits: 0 clipped, 1789 survived, 1554691 were zero
201113-00:54:31,457 nipype.interface INFO:
stderr 2020-11-13T00:54:31.457598:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:54:31,475 nipype.interface INFO:
stderr 2020-11-13T00:54:31.475833:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:54:31,653 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks".
201113-00:54:31,655 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_mean".
201113-00:54:31,661 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:54:35,623 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean".
201113-00:54:35,625 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.build_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors".
201113-00:54:35,679 nipype.workflow INFO:
[Node] Running "build_nuisance_regressors" ("CPAC.utils.interfaces.function.Function")
201113-00:54:36,13 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.build_nuisance_regressors".
201113-00:54:36,15 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_before-filt_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:54:36,50 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_before-filt_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
201113-00:54:36,435 nipype.interface INFO:
stderr 2020-11-13T00:54:36.434868:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:54:36,435 nipype.interface INFO:
stderr 2020-11-13T00:54:36.435774:++ Authored by: Cox the Algebraic (Linear)
201113-00:54:36,803 nipype.interface INFO:
stderr 2020-11-13T00:54:36.803628:++ Setting up regressors
201113-00:54:36,804 nipype.interface INFO:
stderr 2020-11-13T00:54:36.803999:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:54:36,804 nipype.interface INFO:
stderr 2020-11-13T00:54:36.804167: + -- 36 other fixed ort regressors
201113-00:54:36,804 nipype.interface INFO:
stderr 2020-11-13T00:54:36.804334:++ 99 retained time points MINUS 39 regressors ==> 60 D.O.F. left
201113-00:54:36,804 nipype.interface INFO:
stderr 2020-11-13T00:54:36.804866:++ 41103 voxels in the spatial mask
201113-00:54:36,805 nipype.interface INFO:
stderr 2020-11-13T00:54:36.805048:++ Compute pseudo-inverse of fixed orts
201113-00:54:36,807 nipype.interface INFO:
stderr 2020-11-13T00:54:36.807449:++ Loading dataset
201113-00:54:36,856 nipype.interface INFO:
stderr 2020-11-13T00:54:36.856838:++ Starting project-orization
201113-00:54:37,120 nipype.interface INFO:
stderr 2020-11-13T00:54:37.120063:++ Convert results to output dataset
201113-00:54:38,257 nipype.interface INFO:
stderr 2020-11-13T00:54:38.257389:++ Output dataset ./residuals.nii.gz
201113-00:54:38,258 nipype.interface INFO:
stderr 2020-11-13T00:54:38.258263:++ ===== clock time = 1s 823ms
201113-00:54:38,482 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression".
201113-00:54:38,484 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.frequency_filtering_0_0.frequency_filter" in "/outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter".
201113-00:54:38,491 nipype.workflow INFO:
[Node] Running "frequency_filter" ("CPAC.utils.interfaces.function.Function")
201113-00:54:44,145 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.frequency_filtering_0_0.frequency_filter".
201113-00:54:44,147 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:54:44,156 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/bandpassed_demeaned_filtered.nii.gz -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/regressor_bandpassed_demeaned_filtered.1D -polort 2 -prefix residuals.nii.gz
201113-00:54:44,423 nipype.interface INFO:
stderr 2020-11-13T00:54:44.423229:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:54:44,423 nipype.interface INFO:
stderr 2020-11-13T00:54:44.423750:++ Authored by: Cox the Algebraic (Linear)
201113-00:54:44,739 nipype.interface INFO:
stderr 2020-11-13T00:54:44.739229:++ Setting up regressors
201113-00:54:44,739 nipype.interface INFO:
stderr 2020-11-13T00:54:44.739562:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:54:44,739 nipype.interface INFO:
stderr 2020-11-13T00:54:44.739714: + -- 36 other fixed ort regressors
201113-00:54:44,739 nipype.interface INFO:
stderr 2020-11-13T00:54:44.739858:++ 99 retained time points MINUS 39 regressors ==> 60 D.O.F. left
201113-00:54:44,740 nipype.interface INFO:
stderr 2020-11-13T00:54:44.740386:++ 41103 voxels in the spatial mask
201113-00:54:44,740 nipype.interface INFO:
stderr 2020-11-13T00:54:44.740558:++ Compute pseudo-inverse of fixed orts
201113-00:54:44,741 nipype.interface INFO:
stderr 2020-11-13T00:54:44.741775:++ Loading dataset
201113-00:54:44,786 nipype.interface INFO:
stderr 2020-11-13T00:54:44.786754:++ Starting project-orization
201113-00:54:45,52 nipype.interface INFO:
stderr 2020-11-13T00:54:45.052467:++ Convert results to output dataset
201113-00:54:46,282 nipype.interface INFO:
stderr 2020-11-13T00:54:46.282079:++ Output dataset ./residuals.nii.gz
201113-00:54:46,282 nipype.interface INFO:
stderr 2020-11-13T00:54:46.282710:++ ===== clock time = 1s 859ms
201113-00:54:46,513 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression".
201113-00:54:46,515 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_residuals" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_residuals".
201113-00:54:46,524 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_residuals" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:54:46,759 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_residuals".
201113-00:54:46,761 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_freq_filtered" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_freq_filtered".
201113-00:54:46,768 nipype.workflow INFO:
[Node] Running "sinker_0_functional_freq_filtered" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:54:47,3 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_freq_filtered".
201113-00:54:47,4 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_regressors".
201113-00:54:47,12 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_regressors" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:54:47,245 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_regressors".
201113-00:54:47,247 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_2mm_flirt".
201113-00:54:47,255 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:54:48,75 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt".
201113-00:54:48,76 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_merge_masks".
201113-00:54:48,81 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:54:48,312 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks".
201113-00:54:48,314 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks".
201113-00:54:48,320 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:54:48,587 nipype.interface INFO:
stderr 2020-11-13T00:54:48.587656:++ no -frac option: defaulting to -union
201113-00:54:48,588 nipype.interface INFO:
stderr 2020-11-13T00:54:48.588475:++ processing 1 input dataset(s), NN=2...
201113-00:54:48,588 nipype.interface INFO:
stderr 2020-11-13T00:54:48.588729:++ padding all datasets by 0 (for dilations)
201113-00:54:48,628 nipype.interface INFO:
stderr 2020-11-13T00:54:48.628691:++ frac 0 over 1 volumes gives min count 0
201113-00:54:48,630 nipype.interface INFO:
stderr 2020-11-13T00:54:48.630494:++ voxel limits: 0 clipped, 1789 survived, 1554691 were zero
201113-00:54:48,630 nipype.interface INFO:
stderr 2020-11-13T00:54:48.630664:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:54:48,649 nipype.interface INFO:
stderr 2020-11-13T00:54:48.649704:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:54:48,840 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks".
201113-00:54:48,849 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_mean".
201113-00:54:48,857 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:54:52,851 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean".
201113-00:54:52,853 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.build_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors".
201113-00:54:52,912 nipype.workflow INFO:
[Node] Running "build_nuisance_regressors" ("CPAC.utils.interfaces.function.Function")
201113-00:54:53,198 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.build_nuisance_regressors".
201113-00:54:53,200 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_before-filt_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:54:53,229 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_before-filt_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
201113-00:54:53,491 nipype.interface INFO:
stderr 2020-11-13T00:54:53.491510:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:54:53,492 nipype.interface INFO:
stderr 2020-11-13T00:54:53.492383:++ Authored by: Cox the Algebraic (Linear)
201113-00:54:53,904 nipype.interface INFO:
stderr 2020-11-13T00:54:53.904383:++ Setting up regressors
201113-00:54:53,904 nipype.interface INFO:
stderr 2020-11-13T00:54:53.904717:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:54:53,904 nipype.interface INFO:
stderr 2020-11-13T00:54:53.904872: + -- 36 other fixed ort regressors
201113-00:54:53,905 nipype.interface INFO:
stderr 2020-11-13T00:54:53.905045:++ 99 retained time points MINUS 39 regressors ==> 60 D.O.F. left
201113-00:54:53,905 nipype.interface INFO:
stderr 2020-11-13T00:54:53.905603:++ 41129 voxels in the spatial mask
201113-00:54:53,905 nipype.interface INFO:
stderr 2020-11-13T00:54:53.905775:++ Compute pseudo-inverse of fixed orts
201113-00:54:53,907 nipype.interface INFO:
stderr 2020-11-13T00:54:53.907088:++ Loading dataset
201113-00:54:53,951 nipype.interface INFO:
stderr 2020-11-13T00:54:53.951081:++ Starting project-orization
201113-00:54:54,215 nipype.interface INFO:
stderr 2020-11-13T00:54:54.215559:++ Convert results to output dataset
201113-00:54:55,342 nipype.interface INFO:
stderr 2020-11-13T00:54:55.342497:++ Output dataset ./residuals.nii.gz
201113-00:54:55,343 nipype.interface INFO:
stderr 2020-11-13T00:54:55.343146:++ ===== clock time = 1s 851ms
201113-00:54:55,576 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression".
201113-00:54:55,578 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.frequency_filtering_0_0.frequency_filter" in "/outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter".
201113-00:54:55,585 nipype.workflow INFO:
[Node] Running "frequency_filter" ("CPAC.utils.interfaces.function.Function")
201113-00:55:01,157 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.frequency_filtering_0_0.frequency_filter".
201113-00:55:01,159 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:55:01,168 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/bandpassed_demeaned_filtered.nii.gz -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/regressor_bandpassed_demeaned_filtered.1D -polort 2 -prefix residuals.nii.gz
201113-00:55:01,434 nipype.interface INFO:
stderr 2020-11-13T00:55:01.433889:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:55:01,434 nipype.interface INFO:
stderr 2020-11-13T00:55:01.434847:++ Authored by: Cox the Algebraic (Linear)
201113-00:55:01,750 nipype.interface INFO:
stderr 2020-11-13T00:55:01.750491:++ Setting up regressors
201113-00:55:01,750 nipype.interface INFO:
stderr 2020-11-13T00:55:01.750835:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:55:01,751 nipype.interface INFO:
stderr 2020-11-13T00:55:01.751014: + -- 36 other fixed ort regressors
201113-00:55:01,751 nipype.interface INFO:
stderr 2020-11-13T00:55:01.751166:++ 99 retained time points MINUS 39 regressors ==> 60 D.O.F. left
201113-00:55:01,751 nipype.interface INFO:
stderr 2020-11-13T00:55:01.751721:++ 41129 voxels in the spatial mask
201113-00:55:01,751 nipype.interface INFO:
stderr 2020-11-13T00:55:01.751896:++ Compute pseudo-inverse of fixed orts
201113-00:55:01,753 nipype.interface INFO:
stderr 2020-11-13T00:55:01.753168:++ Loading dataset
201113-00:55:01,799 nipype.interface INFO:
stderr 2020-11-13T00:55:01.799341:++ Starting project-orization
201113-00:55:02,64 nipype.interface INFO:
stderr 2020-11-13T00:55:02.064269:++ Convert results to output dataset
201113-00:55:03,296 nipype.interface INFO:
stderr 2020-11-13T00:55:03.296395:++ Output dataset ./residuals.nii.gz
201113-00:55:03,297 nipype.interface INFO:
stderr 2020-11-13T00:55:03.297331:++ ===== clock time = 1s 862ms
201113-00:55:03,535 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression".
201113-00:55:03,537 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_residuals" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_residuals".
201113-00:55:03,546 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_residuals" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:55:03,781 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_residuals".
201113-00:55:03,782 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_freq_filtered" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_freq_filtered".
201113-00:55:03,789 nipype.workflow INFO:
[Node] Running "sinker_0_functional_freq_filtered" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:55:04,24 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_freq_filtered".
201113-00:55:04,26 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_regressors".
201113-00:55:04,33 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_regressors" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:55:04,267 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_regressors".
201113-00:55:04,269 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_2mm_flirt".
201113-00:55:04,278 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:55:05,62 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt".
201113-00:55:05,64 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_merge_masks".
201113-00:55:05,68 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:55:05,301 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks".
201113-00:55:05,303 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks".
201113-00:55:05,310 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:55:05,573 nipype.interface INFO:
stderr 2020-11-13T00:55:05.572897:++ no -frac option: defaulting to -union
201113-00:55:05,573 nipype.interface INFO:
stderr 2020-11-13T00:55:05.573669:++ processing 1 input dataset(s), NN=2...
201113-00:55:05,573 nipype.interface INFO:
stderr 2020-11-13T00:55:05.573897:++ padding all datasets by 0 (for dilations)
201113-00:55:05,613 nipype.interface INFO:
stderr 2020-11-13T00:55:05.613745:++ frac 0 over 1 volumes gives min count 0
201113-00:55:05,615 nipype.interface INFO:
stderr 2020-11-13T00:55:05.615542:++ voxel limits: 0 clipped, 1789 survived, 1554691 were zero
201113-00:55:05,615 nipype.interface INFO:
stderr 2020-11-13T00:55:05.615716:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:55:05,633 nipype.interface INFO:
stderr 2020-11-13T00:55:05.633343:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:55:05,816 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks".
201113-00:55:05,817 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_mean".
201113-00:55:05,826 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:55:09,804 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean".
201113-00:55:09,805 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.build_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors".
201113-00:55:09,878 nipype.workflow INFO:
[Node] Running "build_nuisance_regressors" ("CPAC.utils.interfaces.function.Function")
201113-00:55:10,210 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.build_nuisance_regressors".
201113-00:55:10,213 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_before-filt_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:55:10,249 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_before-filt_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
201113-00:55:10,515 nipype.interface INFO:
stderr 2020-11-13T00:55:10.515724:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:55:10,516 nipype.interface INFO:
stderr 2020-11-13T00:55:10.516270:++ Authored by: Cox the Algebraic (Linear)
201113-00:55:10,924 nipype.interface INFO:
stderr 2020-11-13T00:55:10.924850:++ Setting up regressors
201113-00:55:10,925 nipype.interface INFO:
stderr 2020-11-13T00:55:10.925270:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:55:10,925 nipype.interface INFO:
stderr 2020-11-13T00:55:10.925474: + -- 36 other fixed ort regressors
201113-00:55:10,925 nipype.interface INFO:
stderr 2020-11-13T00:55:10.925617:++ 99 retained time points MINUS 39 regressors ==> 60 D.O.F. left
201113-00:55:10,926 nipype.interface INFO:
stderr 2020-11-13T00:55:10.926170:++ 41198 voxels in the spatial mask
201113-00:55:10,926 nipype.interface INFO:
stderr 2020-11-13T00:55:10.926344:++ Compute pseudo-inverse of fixed orts
201113-00:55:10,927 nipype.interface INFO:
stderr 2020-11-13T00:55:10.927632:++ Loading dataset
201113-00:55:10,976 nipype.interface INFO:
stderr 2020-11-13T00:55:10.976252:++ Starting project-orization
201113-00:55:11,241 nipype.interface INFO:
stderr 2020-11-13T00:55:11.241128:++ Convert results to output dataset
201113-00:55:12,375 nipype.interface INFO:
stderr 2020-11-13T00:55:12.375251:++ Output dataset ./residuals.nii.gz
201113-00:55:12,375 nipype.interface INFO:
stderr 2020-11-13T00:55:12.375907:++ ===== clock time = 1s 859ms
201113-00:55:12,608 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression".
201113-00:55:12,610 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.frequency_filtering_0_0.frequency_filter" in "/outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter".
201113-00:55:12,621 nipype.workflow INFO:
[Node] Running "frequency_filter" ("CPAC.utils.interfaces.function.Function")
201113-00:55:18,233 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.frequency_filtering_0_0.frequency_filter".
201113-00:55:18,234 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:55:18,243 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/bandpassed_demeaned_filtered.nii.gz -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/regressor_bandpassed_demeaned_filtered.1D -polort 2 -prefix residuals.nii.gz
201113-00:55:18,504 nipype.interface INFO:
stderr 2020-11-13T00:55:18.504230:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:55:18,504 nipype.interface INFO:
stderr 2020-11-13T00:55:18.504682:++ Authored by: Cox the Algebraic (Linear)
201113-00:55:18,821 nipype.interface INFO:
stderr 2020-11-13T00:55:18.821725:++ Setting up regressors
201113-00:55:18,822 nipype.interface INFO:
stderr 2020-11-13T00:55:18.822096:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:55:18,822 nipype.interface INFO:
stderr 2020-11-13T00:55:18.822258: + -- 36 other fixed ort regressors
201113-00:55:18,822 nipype.interface INFO:
stderr 2020-11-13T00:55:18.822419:++ 99 retained time points MINUS 39 regressors ==> 60 D.O.F. left
201113-00:55:18,822 nipype.interface INFO:
stderr 2020-11-13T00:55:18.822949:++ 41198 voxels in the spatial mask
201113-00:55:18,823 nipype.interface INFO:
stderr 2020-11-13T00:55:18.823120:++ Compute pseudo-inverse of fixed orts
201113-00:55:18,824 nipype.interface INFO:
stderr 2020-11-13T00:55:18.824338:++ Loading dataset
201113-00:55:18,875 nipype.interface INFO:
stderr 2020-11-13T00:55:18.875199:++ Starting project-orization
201113-00:55:19,138 nipype.interface INFO:
stderr 2020-11-13T00:55:19.138400:++ Convert results to output dataset
201113-00:55:20,368 nipype.interface INFO:
stderr 2020-11-13T00:55:20.367815:++ Output dataset ./residuals.nii.gz
201113-00:55:20,368 nipype.interface INFO:
stderr 2020-11-13T00:55:20.368517:++ ===== clock time = 1s 864ms
201113-00:55:20,599 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression".
201113-00:55:20,601 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_residuals" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_residuals".
201113-00:55:20,611 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_residuals" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:55:20,844 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_residuals".
201113-00:55:20,846 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_freq_filtered" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_freq_filtered".
201113-00:55:20,854 nipype.workflow INFO:
[Node] Running "sinker_0_functional_freq_filtered" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:55:21,92 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_freq_filtered".
201113-00:55:21,94 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_regressors".
201113-00:55:21,102 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_regressors" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:55:21,337 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_regressors".
201113-00:55:21,339 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_2mm_flirt".
201113-00:55:21,347 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:55:22,172 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt".
201113-00:55:22,174 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_merge_masks".
201113-00:55:22,179 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:55:22,412 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks".
201113-00:55:22,414 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks".
201113-00:55:22,419 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:55:22,687 nipype.interface INFO:
stderr 2020-11-13T00:55:22.687449:++ no -frac option: defaulting to -union
201113-00:55:22,688 nipype.interface INFO:
stderr 2020-11-13T00:55:22.688178:++ processing 1 input dataset(s), NN=2...
201113-00:55:22,688 nipype.interface INFO:
stderr 2020-11-13T00:55:22.688450:++ padding all datasets by 0 (for dilations)
201113-00:55:22,728 nipype.interface INFO:
stderr 2020-11-13T00:55:22.728485:++ frac 0 over 1 volumes gives min count 0
201113-00:55:22,730 nipype.interface INFO:
stderr 2020-11-13T00:55:22.730242:++ voxel limits: 0 clipped, 1789 survived, 1554691 were zero
201113-00:55:22,730 nipype.interface INFO:
stderr 2020-11-13T00:55:22.730416:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:55:22,749 nipype.interface INFO:
stderr 2020-11-13T00:55:22.749538:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:55:22,945 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks".
201113-00:55:22,946 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_mean".
201113-00:55:22,953 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:55:28,448 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean".
201113-00:55:28,450 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.build_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors".
201113-00:55:28,510 nipype.workflow INFO:
[Node] Running "build_nuisance_regressors" ("CPAC.utils.interfaces.function.Function")
201113-00:55:28,834 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.build_nuisance_regressors".
201113-00:55:28,836 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_before-filt_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:55:28,857 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_before-filt_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
201113-00:55:29,124 nipype.interface INFO:
stderr 2020-11-13T00:55:29.124693:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:55:29,125 nipype.interface INFO:
stderr 2020-11-13T00:55:29.125239:++ Authored by: Cox the Algebraic (Linear)
201113-00:55:29,662 nipype.interface INFO:
stderr 2020-11-13T00:55:29.662499:++ Setting up regressors
201113-00:55:29,662 nipype.interface INFO:
stderr 2020-11-13T00:55:29.662837:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:55:29,663 nipype.interface INFO:
stderr 2020-11-13T00:55:29.662999: + -- 36 other fixed ort regressors
201113-00:55:29,663 nipype.interface INFO:
stderr 2020-11-13T00:55:29.663144:++ 143 retained time points MINUS 39 regressors ==> 104 D.O.F. left
201113-00:55:29,663 nipype.interface INFO:
stderr 2020-11-13T00:55:29.663677:++ 41141 voxels in the spatial mask
201113-00:55:29,663 nipype.interface INFO:
stderr 2020-11-13T00:55:29.663853:++ Compute pseudo-inverse of fixed orts
201113-00:55:29,665 nipype.interface INFO:
stderr 2020-11-13T00:55:29.665590:++ Loading dataset
201113-00:55:29,742 nipype.interface INFO:
stderr 2020-11-13T00:55:29.742100:++ Starting project-orization
201113-00:55:30,122 nipype.interface INFO:
stderr 2020-11-13T00:55:30.122769:++ Convert results to output dataset
201113-00:55:31,741 nipype.interface INFO:
stderr 2020-11-13T00:55:31.741531:++ Output dataset ./residuals.nii.gz
201113-00:55:31,741 nipype.interface INFO:
stderr 2020-11-13T00:55:31.741902:++ ===== clock time = 2s 617ms
201113-00:55:31,968 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression".
201113-00:55:31,970 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.frequency_filtering_0_0.frequency_filter" in "/outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter".
201113-00:55:31,978 nipype.workflow INFO:
[Node] Running "frequency_filter" ("CPAC.utils.interfaces.function.Function")
201113-00:55:38,447 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.frequency_filtering_0_0.frequency_filter".
201113-00:55:38,451 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:55:38,461 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/bandpassed_demeaned_filtered.nii.gz -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/regressor_bandpassed_demeaned_filtered.1D -polort 2 -prefix residuals.nii.gz
201113-00:55:38,731 nipype.interface INFO:
stderr 2020-11-13T00:55:38.731430:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:55:38,732 nipype.interface INFO:
stderr 2020-11-13T00:55:38.732202:++ Authored by: Cox the Algebraic (Linear)
201113-00:55:39,190 nipype.interface INFO:
stderr 2020-11-13T00:55:39.190106:++ Setting up regressors
201113-00:55:39,190 nipype.interface INFO:
stderr 2020-11-13T00:55:39.190468:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:55:39,190 nipype.interface INFO:
stderr 2020-11-13T00:55:39.190621: + -- 36 other fixed ort regressors
201113-00:55:39,190 nipype.interface INFO:
stderr 2020-11-13T00:55:39.190764:++ 143 retained time points MINUS 39 regressors ==> 104 D.O.F. left
201113-00:55:39,191 nipype.interface INFO:
stderr 2020-11-13T00:55:39.191308:++ 41141 voxels in the spatial mask
201113-00:55:39,191 nipype.interface INFO:
stderr 2020-11-13T00:55:39.191489:++ Compute pseudo-inverse of fixed orts
201113-00:55:39,193 nipype.interface INFO:
stderr 2020-11-13T00:55:39.193156:++ Loading dataset
201113-00:55:39,270 nipype.interface INFO:
stderr 2020-11-13T00:55:39.270361:++ Starting project-orization
201113-00:55:39,639 nipype.interface INFO:
stderr 2020-11-13T00:55:39.639032:++ Convert results to output dataset
201113-00:55:41,314 nipype.interface INFO:
stderr 2020-11-13T00:55:41.314109:++ Output dataset ./residuals.nii.gz
201113-00:55:41,314 nipype.interface INFO:
stderr 2020-11-13T00:55:41.314714:++ ===== clock time = 2s 582ms
201113-00:55:41,543 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression".
201113-00:55:41,545 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_residuals" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_residuals".
201113-00:55:41,554 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_residuals" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:55:41,788 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_residuals".
201113-00:55:41,790 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_freq_filtered" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_freq_filtered".
201113-00:55:41,798 nipype.workflow INFO:
[Node] Running "sinker_0_functional_freq_filtered" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:55:42,34 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_freq_filtered".
201113-00:55:42,36 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_regressors".
201113-00:55:42,43 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_regressors" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:55:42,280 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_regressors".
201113-00:55:42,282 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_2mm_flirt".
201113-00:55:42,291 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:55:43,101 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt".
201113-00:55:43,103 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_merge_masks".
201113-00:55:43,108 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:55:43,339 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks".
201113-00:55:43,341 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks".
201113-00:55:43,346 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:55:43,612 nipype.interface INFO:
stderr 2020-11-13T00:55:43.612311:++ no -frac option: defaulting to -union
201113-00:55:43,612 nipype.interface INFO:
stderr 2020-11-13T00:55:43.612792:++ processing 1 input dataset(s), NN=2...
201113-00:55:43,613 nipype.interface INFO:
stderr 2020-11-13T00:55:43.613159:++ padding all datasets by 0 (for dilations)
201113-00:55:43,652 nipype.interface INFO:
stderr 2020-11-13T00:55:43.652868:++ frac 0 over 1 volumes gives min count 0
201113-00:55:43,654 nipype.interface INFO:
stderr 2020-11-13T00:55:43.654652:++ voxel limits: 0 clipped, 1789 survived, 1554691 were zero
201113-00:55:43,654 nipype.interface INFO:
stderr 2020-11-13T00:55:43.654825:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:55:43,672 nipype.interface INFO:
stderr 2020-11-13T00:55:43.672441:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:55:43,856 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks".
201113-00:55:43,857 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_mean".
201113-00:55:43,864 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:55:50,570 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean".
201113-00:55:50,572 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.build_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors".
201113-00:55:50,622 nipype.workflow INFO:
[Node] Running "build_nuisance_regressors" ("CPAC.utils.interfaces.function.Function")
201113-00:55:50,944 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.build_nuisance_regressors".
201113-00:55:50,946 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_before-filt_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:55:50,975 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_before-filt_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
201113-00:55:51,242 nipype.interface INFO:
stderr 2020-11-13T00:55:51.242443:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:55:51,243 nipype.interface INFO:
stderr 2020-11-13T00:55:51.243017:++ Authored by: Cox the Algebraic (Linear)
201113-00:55:51,820 nipype.interface INFO:
stderr 2020-11-13T00:55:51.819915:++ Setting up regressors
201113-00:55:51,820 nipype.interface INFO:
stderr 2020-11-13T00:55:51.820284:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:55:51,820 nipype.interface INFO:
stderr 2020-11-13T00:55:51.820454: + -- 36 other fixed ort regressors
201113-00:55:51,820 nipype.interface INFO:
stderr 2020-11-13T00:55:51.820598:++ 180 retained time points MINUS 39 regressors ==> 141 D.O.F. left
201113-00:55:51,821 nipype.interface INFO:
stderr 2020-11-13T00:55:51.821135:++ 23979 voxels in the spatial mask
201113-00:55:51,821 nipype.interface INFO:
stderr 2020-11-13T00:55:51.821328:++ Compute pseudo-inverse of fixed orts
201113-00:55:51,823 nipype.interface INFO:
stderr 2020-11-13T00:55:51.823397:++ Loading dataset
201113-00:55:51,870 nipype.interface INFO:
stderr 2020-11-13T00:55:51.870807:++ Starting project-orization
201113-00:55:52,136 nipype.interface INFO:
stderr 2020-11-13T00:55:52.135977:++ Convert results to output dataset
201113-00:55:53,583 nipype.interface INFO:
stderr 2020-11-13T00:55:53.583098:++ Output dataset ./residuals.nii.gz
201113-00:55:53,583 nipype.interface INFO:
stderr 2020-11-13T00:55:53.583683:++ ===== clock time = 2s 341ms
201113-00:55:53,814 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression".
201113-00:55:53,816 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.frequency_filtering_0_0.frequency_filter" in "/outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter".
201113-00:55:53,823 nipype.workflow INFO:
[Node] Running "frequency_filter" ("CPAC.utils.interfaces.function.Function")
201113-00:55:58,313 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.frequency_filtering_0_0.frequency_filter".
201113-00:55:58,314 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:55:58,324 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/bandpassed_demeaned_filtered.nii.gz -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/regressor_bandpassed_demeaned_filtered.1D -polort 2 -prefix residuals.nii.gz
201113-00:55:58,590 nipype.interface INFO:
stderr 2020-11-13T00:55:58.590817:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:55:58,591 nipype.interface INFO:
stderr 2020-11-13T00:55:58.591637:++ Authored by: Cox the Algebraic (Linear)
201113-00:55:59,76 nipype.interface INFO:
stderr 2020-11-13T00:55:59.076628:++ Setting up regressors
201113-00:55:59,76 nipype.interface INFO:
stderr 2020-11-13T00:55:59.076969:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:55:59,77 nipype.interface INFO:
stderr 2020-11-13T00:55:59.077124: + -- 36 other fixed ort regressors
201113-00:55:59,77 nipype.interface INFO:
stderr 2020-11-13T00:55:59.077268:++ 180 retained time points MINUS 39 regressors ==> 141 D.O.F. left
201113-00:55:59,77 nipype.interface INFO:
stderr 2020-11-13T00:55:59.077802:++ 23979 voxels in the spatial mask
201113-00:55:59,78 nipype.interface INFO:
stderr 2020-11-13T00:55:59.077994:++ Compute pseudo-inverse of fixed orts
201113-00:55:59,80 nipype.interface INFO:
stderr 2020-11-13T00:55:59.079997:++ Loading dataset
201113-00:55:59,126 nipype.interface INFO:
stderr 2020-11-13T00:55:59.126583:++ Starting project-orization
201113-00:55:59,391 nipype.interface INFO:
stderr 2020-11-13T00:55:59.391623:++ Convert results to output dataset
201113-00:56:00,861 nipype.interface INFO:
stderr 2020-11-13T00:56:00.861016:++ Output dataset ./residuals.nii.gz
201113-00:56:00,861 nipype.interface INFO:
stderr 2020-11-13T00:56:00.861620:++ ===== clock time = 2s 270ms
201113-00:56:01,97 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression".
201113-00:56:01,99 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_residuals" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_residuals".
201113-00:56:01,110 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_residuals" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:56:01,344 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_residuals".
201113-00:56:01,346 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_freq_filtered" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_freq_filtered".
201113-00:56:01,354 nipype.workflow INFO:
[Node] Running "sinker_0_functional_freq_filtered" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:56:01,593 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_freq_filtered".
201113-00:56:01,595 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_regressors".
201113-00:56:01,602 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_regressors" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:56:01,837 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_regressors".
201113-00:56:01,839 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_2mm_flirt".
201113-00:56:01,847 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:56:02,667 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt".
201113-00:56:02,669 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_merge_masks".
201113-00:56:02,673 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:56:02,902 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks".
201113-00:56:02,903 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks".
201113-00:56:02,908 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:56:03,171 nipype.interface INFO:
stderr 2020-11-13T00:56:03.171595:++ no -frac option: defaulting to -union
201113-00:56:03,172 nipype.interface INFO:
stderr 2020-11-13T00:56:03.172253:++ processing 1 input dataset(s), NN=2...
201113-00:56:03,172 nipype.interface INFO:
stderr 2020-11-13T00:56:03.172505:++ padding all datasets by 0 (for dilations)
201113-00:56:03,212 nipype.interface INFO:
stderr 2020-11-13T00:56:03.212271:++ frac 0 over 1 volumes gives min count 0
201113-00:56:03,213 nipype.interface INFO:
stderr 2020-11-13T00:56:03.213831:++ voxel limits: 0 clipped, 1789 survived, 1554691 were zero
201113-00:56:03,214 nipype.interface INFO:
stderr 2020-11-13T00:56:03.214025:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:56:03,230 nipype.interface INFO:
stderr 2020-11-13T00:56:03.230479:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:56:03,407 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks".
201113-00:56:03,409 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_mean".
201113-00:56:03,415 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:56:08,519 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean".
201113-00:56:08,521 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.build_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors".
201113-00:56:08,589 nipype.workflow INFO:
[Node] Running "build_nuisance_regressors" ("CPAC.utils.interfaces.function.Function")
201113-00:56:08,876 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.build_nuisance_regressors".
201113-00:56:08,880 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_before-filt_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:56:08,908 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_before-filt_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
201113-00:56:09,167 nipype.interface INFO:
stderr 2020-11-13T00:56:09.167534:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:56:09,168 nipype.interface INFO:
stderr 2020-11-13T00:56:09.168177:++ Authored by: Cox the Algebraic (Linear)
201113-00:56:09,669 nipype.interface INFO:
stderr 2020-11-13T00:56:09.669869:++ Setting up regressors
201113-00:56:09,670 nipype.interface INFO:
stderr 2020-11-13T00:56:09.670243:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:56:09,670 nipype.interface INFO:
stderr 2020-11-13T00:56:09.670452: + -- 36 other fixed ort regressors
201113-00:56:09,670 nipype.interface INFO:
stderr 2020-11-13T00:56:09.670614:++ 130 retained time points MINUS 39 regressors ==> 91 D.O.F. left
201113-00:56:09,671 nipype.interface INFO:
stderr 2020-11-13T00:56:09.671207:++ 41111 voxels in the spatial mask
201113-00:56:09,671 nipype.interface INFO:
stderr 2020-11-13T00:56:09.671388:++ Compute pseudo-inverse of fixed orts
201113-00:56:09,673 nipype.interface INFO:
stderr 2020-11-13T00:56:09.672986:++ Loading dataset
201113-00:56:09,730 nipype.interface INFO:
stderr 2020-11-13T00:56:09.730352:++ Starting project-orization
201113-00:56:10,69 nipype.interface INFO:
stderr 2020-11-13T00:56:10.069226:++ Convert results to output dataset
201113-00:56:11,556 nipype.interface INFO:
stderr 2020-11-13T00:56:11.556600:++ Output dataset ./residuals.nii.gz
201113-00:56:11,557 nipype.interface INFO:
stderr 2020-11-13T00:56:11.557420:++ ===== clock time = 2s 389ms
201113-00:56:11,771 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression".
201113-00:56:11,774 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.frequency_filtering_0_0.frequency_filter" in "/outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter".
201113-00:56:11,780 nipype.workflow INFO:
[Node] Running "frequency_filter" ("CPAC.utils.interfaces.function.Function")
201113-00:56:18,50 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.frequency_filtering_0_0.frequency_filter".
201113-00:56:18,52 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:56:18,61 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/bandpassed_demeaned_filtered.nii.gz -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/regressor_bandpassed_demeaned_filtered.1D -polort 2 -prefix residuals.nii.gz
201113-00:56:18,329 nipype.interface INFO:
stderr 2020-11-13T00:56:18.329316:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:56:18,329 nipype.interface INFO:
stderr 2020-11-13T00:56:18.329848:++ Authored by: Cox the Algebraic (Linear)
201113-00:56:18,744 nipype.interface INFO:
stderr 2020-11-13T00:56:18.744613:++ Setting up regressors
201113-00:56:18,744 nipype.interface INFO:
stderr 2020-11-13T00:56:18.744970:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:56:18,745 nipype.interface INFO:
stderr 2020-11-13T00:56:18.745127: + -- 36 other fixed ort regressors
201113-00:56:18,745 nipype.interface INFO:
stderr 2020-11-13T00:56:18.745272:++ 130 retained time points MINUS 39 regressors ==> 91 D.O.F. left
201113-00:56:18,745 nipype.interface INFO:
stderr 2020-11-13T00:56:18.745813:++ 41111 voxels in the spatial mask
201113-00:56:18,746 nipype.interface INFO:
stderr 2020-11-13T00:56:18.746016:++ Compute pseudo-inverse of fixed orts
201113-00:56:18,747 nipype.interface INFO:
stderr 2020-11-13T00:56:18.747598:++ Loading dataset
201113-00:56:18,810 nipype.interface INFO:
stderr 2020-11-13T00:56:18.810050:++ Starting project-orization
201113-00:56:19,149 nipype.interface INFO:
stderr 2020-11-13T00:56:19.148996:++ Convert results to output dataset
201113-00:56:20,700 nipype.interface INFO:
stderr 2020-11-13T00:56:20.699892:++ Output dataset ./residuals.nii.gz
201113-00:56:20,700 nipype.interface INFO:
stderr 2020-11-13T00:56:20.700520:++ ===== clock time = 2s 370ms
201113-00:56:20,924 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression".
201113-00:56:20,926 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_residuals" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_residuals".
201113-00:56:20,935 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_residuals" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:56:21,170 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_residuals".
201113-00:56:21,172 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_freq_filtered" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_freq_filtered".
201113-00:56:21,180 nipype.workflow INFO:
[Node] Running "sinker_0_functional_freq_filtered" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:56:21,414 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_freq_filtered".
201113-00:56:21,416 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_regressors".
201113-00:56:21,424 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_regressors" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:56:21,661 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_regressors".
201113-00:56:21,663 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_2mm_flirt".
201113-00:56:21,671 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:56:22,486 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt".
201113-00:56:22,488 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_merge_masks".
201113-00:56:22,493 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:56:22,728 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks".
201113-00:56:22,729 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks".
201113-00:56:22,736 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:56:23,4 nipype.interface INFO:
stderr 2020-11-13T00:56:23.003921:++ no -frac option: defaulting to -union
201113-00:56:23,4 nipype.interface INFO:
stderr 2020-11-13T00:56:23.004762:++ processing 1 input dataset(s), NN=2...
201113-00:56:23,5 nipype.interface INFO:
stderr 2020-11-13T00:56:23.005021:++ padding all datasets by 0 (for dilations)
201113-00:56:23,46 nipype.interface INFO:
stderr 2020-11-13T00:56:23.046056:++ frac 0 over 1 volumes gives min count 0
201113-00:56:23,47 nipype.interface INFO:
stderr 2020-11-13T00:56:23.047796:++ voxel limits: 0 clipped, 1789 survived, 1554691 were zero
201113-00:56:23,48 nipype.interface INFO:
stderr 2020-11-13T00:56:23.047981:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:56:23,66 nipype.interface INFO:
stderr 2020-11-13T00:56:23.066827:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:56:23,258 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks".
201113-00:56:23,260 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_mean".
201113-00:56:23,266 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:56:28,340 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean".
201113-00:56:28,342 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.build_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors".
201113-00:56:28,417 nipype.workflow INFO:
[Node] Running "build_nuisance_regressors" ("CPAC.utils.interfaces.function.Function")
201113-00:56:28,737 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.build_nuisance_regressors".
201113-00:56:28,739 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_before-filt_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:56:28,772 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_before-filt_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
201113-00:56:29,37 nipype.interface INFO:
stderr 2020-11-13T00:56:29.037267:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:56:29,37 nipype.interface INFO:
stderr 2020-11-13T00:56:29.037757:++ Authored by: Cox the Algebraic (Linear)
201113-00:56:29,581 nipype.interface INFO:
stderr 2020-11-13T00:56:29.581819:++ Setting up regressors
201113-00:56:29,582 nipype.interface INFO:
stderr 2020-11-13T00:56:29.582189:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:56:29,582 nipype.interface INFO:
stderr 2020-11-13T00:56:29.582365: + -- 36 other fixed ort regressors
201113-00:56:29,582 nipype.interface INFO:
stderr 2020-11-13T00:56:29.582515:++ 130 retained time points MINUS 39 regressors ==> 91 D.O.F. left
201113-00:56:29,583 nipype.interface INFO:
stderr 2020-11-13T00:56:29.583056:++ 41090 voxels in the spatial mask
201113-00:56:29,583 nipype.interface INFO:
stderr 2020-11-13T00:56:29.583234:++ Compute pseudo-inverse of fixed orts
201113-00:56:29,584 nipype.interface INFO:
stderr 2020-11-13T00:56:29.584817:++ Loading dataset
201113-00:56:29,644 nipype.interface INFO:
stderr 2020-11-13T00:56:29.644086:++ Starting project-orization
201113-00:56:29,979 nipype.interface INFO:
stderr 2020-11-13T00:56:29.979742:++ Convert results to output dataset
201113-00:56:31,452 nipype.interface INFO:
stderr 2020-11-13T00:56:31.452297:++ Output dataset ./residuals.nii.gz
201113-00:56:31,452 nipype.interface INFO:
stderr 2020-11-13T00:56:31.452884:++ ===== clock time = 2s 415ms
201113-00:56:31,668 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression".
201113-00:56:31,670 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.frequency_filtering_0_0.frequency_filter" in "/outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter".
201113-00:56:31,677 nipype.workflow INFO:
[Node] Running "frequency_filter" ("CPAC.utils.interfaces.function.Function")
201113-00:56:37,832 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.frequency_filtering_0_0.frequency_filter".
201113-00:56:37,834 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:56:37,842 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/bandpassed_demeaned_filtered.nii.gz -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/regressor_bandpassed_demeaned_filtered.1D -polort 2 -prefix residuals.nii.gz
201113-00:56:38,108 nipype.interface INFO:
stderr 2020-11-13T00:56:38.108183:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:56:38,108 nipype.interface INFO:
stderr 2020-11-13T00:56:38.108655:++ Authored by: Cox the Algebraic (Linear)
201113-00:56:38,523 nipype.interface INFO:
stderr 2020-11-13T00:56:38.523046:++ Setting up regressors
201113-00:56:38,523 nipype.interface INFO:
stderr 2020-11-13T00:56:38.523394:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:56:38,523 nipype.interface INFO:
stderr 2020-11-13T00:56:38.523547: + -- 36 other fixed ort regressors
201113-00:56:38,523 nipype.interface INFO:
stderr 2020-11-13T00:56:38.523690:++ 130 retained time points MINUS 39 regressors ==> 91 D.O.F. left
201113-00:56:38,524 nipype.interface INFO:
stderr 2020-11-13T00:56:38.524241:++ 41090 voxels in the spatial mask
201113-00:56:38,524 nipype.interface INFO:
stderr 2020-11-13T00:56:38.524420:++ Compute pseudo-inverse of fixed orts
201113-00:56:38,526 nipype.interface INFO:
stderr 2020-11-13T00:56:38.526244:++ Loading dataset
201113-00:56:38,589 nipype.interface INFO:
stderr 2020-11-13T00:56:38.589294:++ Starting project-orization
201113-00:56:38,927 nipype.interface INFO:
stderr 2020-11-13T00:56:38.927901:++ Convert results to output dataset
201113-00:56:40,480 nipype.interface INFO:
stderr 2020-11-13T00:56:40.480381:++ Output dataset ./residuals.nii.gz
201113-00:56:40,480 nipype.interface INFO:
stderr 2020-11-13T00:56:40.480969:++ ===== clock time = 2s 372ms
201113-00:56:40,703 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression".
201113-00:56:40,705 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_residuals" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_residuals".
201113-00:56:40,715 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_residuals" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:56:40,950 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_residuals".
201113-00:56:40,952 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_freq_filtered" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_freq_filtered".
201113-00:56:40,959 nipype.workflow INFO:
[Node] Running "sinker_0_functional_freq_filtered" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:56:41,195 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_freq_filtered".
201113-00:56:41,196 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_regressors".
201113-00:56:41,204 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_regressors" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:56:41,439 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_regressors".
201113-00:56:41,441 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_2mm_flirt".
201113-00:56:41,449 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-181_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:56:42,273 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt".
201113-00:56:42,276 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_merge_masks".
201113-00:56:42,281 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:56:42,515 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks".
201113-00:56:42,516 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks".
201113-00:56:42,523 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:56:42,791 nipype.interface INFO:
stderr 2020-11-13T00:56:42.791506:++ no -frac option: defaulting to -union
201113-00:56:42,792 nipype.interface INFO:
stderr 2020-11-13T00:56:42.792321:++ processing 1 input dataset(s), NN=2...
201113-00:56:42,792 nipype.interface INFO:
stderr 2020-11-13T00:56:42.792593:++ padding all datasets by 0 (for dilations)
201113-00:56:42,834 nipype.interface INFO:
stderr 2020-11-13T00:56:42.833975:++ frac 0 over 1 volumes gives min count 0
201113-00:56:42,835 nipype.interface INFO:
stderr 2020-11-13T00:56:42.835733:++ voxel limits: 0 clipped, 1789 survived, 1554691 were zero
201113-00:56:42,835 nipype.interface INFO:
stderr 2020-11-13T00:56:42.835929:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:56:42,854 nipype.interface INFO:
stderr 2020-11-13T00:56:42.854421:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:56:43,47 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks".
201113-00:56:43,48 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_mean".
201113-00:56:43,54 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:56:48,86 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean".
201113-00:56:48,88 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.build_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors".
201113-00:56:48,152 nipype.workflow INFO:
[Node] Running "build_nuisance_regressors" ("CPAC.utils.interfaces.function.Function")
201113-00:56:48,501 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regressor_0_0.build_nuisance_regressors".
201113-00:56:48,503 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_before-filt_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:56:48,538 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_before-filt_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
201113-00:56:48,795 nipype.interface INFO:
stderr 2020-11-13T00:56:48.795555:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:56:48,796 nipype.interface INFO:
stderr 2020-11-13T00:56:48.795993:++ Authored by: Cox the Algebraic (Linear)
201113-00:56:49,329 nipype.interface INFO:
stderr 2020-11-13T00:56:49.329701:++ Setting up regressors
201113-00:56:49,330 nipype.interface INFO:
stderr 2020-11-13T00:56:49.330067:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:56:49,330 nipype.interface INFO:
stderr 2020-11-13T00:56:49.330229: + -- 36 other fixed ort regressors
201113-00:56:49,330 nipype.interface INFO:
stderr 2020-11-13T00:56:49.330397:++ 130 retained time points MINUS 39 regressors ==> 91 D.O.F. left
201113-00:56:49,330 nipype.interface INFO:
stderr 2020-11-13T00:56:49.330924:++ 41101 voxels in the spatial mask
201113-00:56:49,331 nipype.interface INFO:
stderr 2020-11-13T00:56:49.331130:++ Compute pseudo-inverse of fixed orts
201113-00:56:49,332 nipype.interface INFO:
stderr 2020-11-13T00:56:49.332709:++ Loading dataset
201113-00:56:49,388 nipype.interface INFO:
stderr 2020-11-13T00:56:49.388407:++ Starting project-orization
201113-00:56:49,723 nipype.interface INFO:
stderr 2020-11-13T00:56:49.722992:++ Convert results to output dataset
201113-00:56:51,210 nipype.interface INFO:
stderr 2020-11-13T00:56:51.209876:++ Output dataset ./residuals.nii.gz
201113-00:56:51,210 nipype.interface INFO:
stderr 2020-11-13T00:56:51.210537:++ ===== clock time = 2s 414ms
201113-00:56:51,428 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression".
201113-00:56:51,430 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.frequency_filtering_0_0.frequency_filter" in "/outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter".
201113-00:56:51,438 nipype.workflow INFO:
[Node] Running "frequency_filter" ("CPAC.utils.interfaces.function.Function")
201113-00:56:57,754 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.frequency_filtering_0_0.frequency_filter".
201113-00:56:57,755 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:56:57,765 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/bandpassed_demeaned_filtered.nii.gz -mask /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/regressor_bandpassed_demeaned_filtered.1D -polort 2 -prefix residuals.nii.gz
201113-00:56:58,31 nipype.interface INFO:
stderr 2020-11-13T00:56:58.031556:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:56:58,32 nipype.interface INFO:
stderr 2020-11-13T00:56:58.032350:++ Authored by: Cox the Algebraic (Linear)
201113-00:56:58,445 nipype.interface INFO:
stderr 2020-11-13T00:56:58.445496:++ Setting up regressors
201113-00:56:58,445 nipype.interface INFO:
stderr 2020-11-13T00:56:58.445857:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:56:58,446 nipype.interface INFO:
stderr 2020-11-13T00:56:58.446040: + -- 36 other fixed ort regressors
201113-00:56:58,446 nipype.interface INFO:
stderr 2020-11-13T00:56:58.446196:++ 130 retained time points MINUS 39 regressors ==> 91 D.O.F. left
201113-00:56:58,446 nipype.interface INFO:
stderr 2020-11-13T00:56:58.446753:++ 41101 voxels in the spatial mask
201113-00:56:58,446 nipype.interface INFO:
stderr 2020-11-13T00:56:58.446932:++ Compute pseudo-inverse of fixed orts
201113-00:56:58,448 nipype.interface INFO:
stderr 2020-11-13T00:56:58.448448:++ Loading dataset
201113-00:56:58,510 nipype.interface INFO:
stderr 2020-11-13T00:56:58.510780:++ Starting project-orization
201113-00:56:58,846 nipype.interface INFO:
stderr 2020-11-13T00:56:58.846624:++ Convert results to output dataset
201113-00:57:00,395 nipype.interface INFO:
stderr 2020-11-13T00:57:00.395596:++ Output dataset ./residuals.nii.gz
201113-00:57:00,396 nipype.interface INFO:
stderr 2020-11-13T00:57:00.396219:++ ===== clock time = 2s 364ms
201113-00:57:00,620 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression".
201113-00:57:00,622 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_residuals" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_residuals".
201113-00:57:00,633 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_residuals" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:00,866 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_residuals".
201113-00:57:00,868 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_freq_filtered" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_freq_filtered".
201113-00:57:00,876 nipype.workflow INFO:
[Node] Running "sinker_0_functional_freq_filtered" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:01,114 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_freq_filtered".
201113-00:57:01,116 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_regressors".
201113-00:57:01,124 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_regressors" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:01,357 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_nuisance_regressors".
201113-00:57:01,359 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_csf_gm_wm_0.resample_o_csf" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_csf_gm_wm_0/resample_o_csf".
201113-00:57:01,364 nipype.workflow INFO:
[Node] Running "resample_o_csf" ("CPAC.utils.interfaces.function.Function")
201113-00:57:02,175 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_csf_gm_wm_0.resample_o_csf".
201113-00:57:02,177 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_csf_gm_wm_0.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_csf_gm_wm_0/montage_s".
201113-00:57:02,206 nipype.workflow INFO:
[Node] Running "montage_s" ("CPAC.utils.interfaces.function.Function")
201113-00:57:06,163 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_csf_gm_wm_0.montage_s".
201113-00:57:06,165 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___csf_gm_wm_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/sinker_0_qc___csf_gm_wm_s".
201113-00:57:06,173 nipype.workflow INFO:
[Node] Running "sinker_0_qc___csf_gm_wm_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:06,384 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___csf_gm_wm_s/montage_csf_gm_wm_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/csf_gm_wm_s/montage_csf_gm_wm_s.png
201113-00:57:06,408 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___csf_gm_wm_s".
201113-00:57:06,410 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_csf_gm_wm_0.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_csf_gm_wm_0/montage_a".
201113-00:57:06,418 nipype.workflow INFO:
[Node] Running "montage_a" ("CPAC.utils.interfaces.function.Function")
201113-00:57:10,645 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_csf_gm_wm_0.montage_a".
201113-00:57:10,647 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___csf_gm_wm_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/sinker_0_qc___csf_gm_wm_a".
201113-00:57:10,657 nipype.workflow INFO:
[Node] Running "sinker_0_qc___csf_gm_wm_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:10,871 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___csf_gm_wm_a/montage_csf_gm_wm_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/csf_gm_wm_a/montage_csf_gm_wm_a.png
201113-00:57:10,893 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___csf_gm_wm_a".
201113-00:57:10,894 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_anatomical_csf_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/sinker_0_anatomical_csf_mask".
201113-00:57:10,902 nipype.workflow INFO:
[Node] Running "sinker_0_anatomical_csf_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:11,132 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_anatomical_csf_mask".
201113-00:57:11,133 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_anatomical_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-1/sinker_0_anatomical_brain".
201113-00:57:11,153 nipype.workflow INFO:
[Node] Running "sinker_0_anatomical_brain" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:11,388 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_anatomical_brain".
201113-00:57:11,390 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_edge_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_edge_0".
201113-00:57:11,396 nipype.workflow INFO:
[Node] Running "anat_edge_0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:14,792 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_edge_0".
201113-00:57:14,793 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.resample_o" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/resample_o".
201113-00:57:14,798 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:57:15,735 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.resample_o".
201113-00:57:15,736 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_tgng_run-3/montage_s".
201113-00:57:15,765 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_tgng_run-3/montage_s/mapflow/_montage_s0".
201113-00:57:15,770 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:18,213 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:57:18,216 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.montage_s".
201113-00:57:18,216 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:18,224 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:18,437 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_t1_edge_s/_scan_tgng_run-3/_montage_s0/t1_edge_on_mean_func_in_t1_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_t1_edge_s/_scan_tgng_run-3/_montage_s0/t1_edge_on_mean_func_in_t1_s.png
201113-00:57:18,455 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:18,456 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_tgng_run-3/montage_a".
201113-00:57:18,463 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_tgng_run-3/montage_a/mapflow/_montage_a0".
201113-00:57:18,467 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:21,339 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:57:21,343 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.montage_a".
201113-00:57:21,343 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:21,351 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:21,563 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_t1_edge_a/_scan_tgng_run-3/_montage_a0/t1_edge_on_mean_func_in_t1_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_t1_edge_a/_scan_tgng_run-3/_montage_a0/t1_edge_on_mean_func_in_t1_a.png
201113-00:57:21,584 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:21,585 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_tgng_run-2/montage_s".
201113-00:57:21,612 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_tgng_run-2/montage_s/mapflow/_montage_s0".
201113-00:57:21,616 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:24,115 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:57:24,120 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.montage_s".
201113-00:57:24,120 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:24,129 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:24,341 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_t1_edge_s/_scan_tgng_run-2/_montage_s0/t1_edge_on_mean_func_in_t1_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_t1_edge_s/_scan_tgng_run-2/_montage_s0/t1_edge_on_mean_func_in_t1_s.png
201113-00:57:24,363 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:24,364 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_tgng_run-2/montage_a".
201113-00:57:24,371 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_tgng_run-2/montage_a/mapflow/_montage_a0".
201113-00:57:24,376 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:27,211 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:57:27,215 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.montage_a".
201113-00:57:27,215 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:27,223 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:27,434 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_t1_edge_a/_scan_tgng_run-2/_montage_a0/t1_edge_on_mean_func_in_t1_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_t1_edge_a/_scan_tgng_run-2/_montage_a0/t1_edge_on_mean_func_in_t1_a.png
201113-00:57:27,455 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:27,457 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_tgng_run-1/montage_s".
201113-00:57:27,465 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_tgng_run-1/montage_s/mapflow/_montage_s0".
201113-00:57:27,472 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:30,120 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:57:30,123 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.montage_s".
201113-00:57:30,124 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:30,132 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:30,344 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_t1_edge_s/_scan_tgng_run-1/_montage_s0/t1_edge_on_mean_func_in_t1_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_t1_edge_s/_scan_tgng_run-1/_montage_s0/t1_edge_on_mean_func_in_t1_s.png
201113-00:57:30,364 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:30,366 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_tgng_run-1/montage_a".
201113-00:57:30,372 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_tgng_run-1/montage_a/mapflow/_montage_a0".
201113-00:57:30,377 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:33,142 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:57:33,146 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.montage_a".
201113-00:57:33,147 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:33,155 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:33,368 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_t1_edge_a/_scan_tgng_run-1/_montage_a0/t1_edge_on_mean_func_in_t1_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_t1_edge_a/_scan_tgng_run-1/_montage_a0/t1_edge_on_mean_func_in_t1_a.png
201113-00:57:33,390 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:33,392 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_rest_run-1/montage_s".
201113-00:57:33,399 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_rest_run-1/montage_s/mapflow/_montage_s0".
201113-00:57:33,404 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:35,858 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:57:35,862 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.montage_s".
201113-00:57:35,862 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:35,871 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:36,83 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_t1_edge_s/_scan_rest_run-1/_montage_s0/t1_edge_on_mean_func_in_t1_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_t1_edge_s/_scan_rest_run-1/_montage_s0/t1_edge_on_mean_func_in_t1_s.png
201113-00:57:36,102 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:36,105 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_rest_run-1/montage_a".
201113-00:57:36,111 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_rest_run-1/montage_a/mapflow/_montage_a0".
201113-00:57:36,116 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:39,14 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:57:39,18 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.montage_a".
201113-00:57:39,19 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:39,29 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:39,240 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_t1_edge_a/_scan_rest_run-1/_montage_a0/t1_edge_on_mean_func_in_t1_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_t1_edge_a/_scan_rest_run-1/_montage_a0/t1_edge_on_mean_func_in_t1_a.png
201113-00:57:39,262 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:39,264 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_ms_run-1/montage_s".
201113-00:57:39,273 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_ms_run-1/montage_s/mapflow/_montage_s0".
201113-00:57:39,279 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:41,774 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:57:41,778 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.montage_s".
201113-00:57:41,778 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:41,786 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:41,998 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_t1_edge_s/_scan_ms_run-1/_montage_s0/t1_edge_on_mean_func_in_t1_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_t1_edge_s/_scan_ms_run-1/_montage_s0/t1_edge_on_mean_func_in_t1_s.png
201113-00:57:42,15 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:42,17 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_ms_run-1/montage_a".
201113-00:57:42,25 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_ms_run-1/montage_a/mapflow/_montage_a0".
201113-00:57:42,30 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:44,852 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:57:44,855 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.montage_a".
201113-00:57:44,855 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:44,863 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:45,74 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_t1_edge_a/_scan_ms_run-1/_montage_a0/t1_edge_on_mean_func_in_t1_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_t1_edge_a/_scan_ms_run-1/_montage_a0/t1_edge_on_mean_func_in_t1_a.png
201113-00:57:45,95 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:45,97 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_matching_run-3/montage_s".
201113-00:57:45,105 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_matching_run-3/montage_s/mapflow/_montage_s0".
201113-00:57:45,110 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:47,705 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:57:47,709 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.montage_s".
201113-00:57:47,709 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:47,718 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:47,931 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_t1_edge_s/_scan_matching_run-3/_montage_s0/t1_edge_on_mean_func_in_t1_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_t1_edge_s/_scan_matching_run-3/_montage_s0/t1_edge_on_mean_func_in_t1_s.png
201113-00:57:47,954 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:47,955 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_matching_run-3/montage_a".
201113-00:57:47,962 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_matching_run-3/montage_a/mapflow/_montage_a0".
201113-00:57:47,966 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:50,779 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:57:50,783 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.montage_a".
201113-00:57:50,783 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:50,791 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:51,3 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_t1_edge_a/_scan_matching_run-3/_montage_a0/t1_edge_on_mean_func_in_t1_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_t1_edge_a/_scan_matching_run-3/_montage_a0/t1_edge_on_mean_func_in_t1_a.png
201113-00:57:51,24 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:51,26 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_matching_run-2/montage_s".
201113-00:57:51,63 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_matching_run-2/montage_s/mapflow/_montage_s0".
201113-00:57:51,67 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:53,618 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:57:53,621 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.montage_s".
201113-00:57:53,621 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:53,629 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:53,841 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_t1_edge_s/_scan_matching_run-2/_montage_s0/t1_edge_on_mean_func_in_t1_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_t1_edge_s/_scan_matching_run-2/_montage_s0/t1_edge_on_mean_func_in_t1_s.png
201113-00:57:53,862 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:53,863 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_matching_run-2/montage_a".
201113-00:57:53,870 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_matching_run-2/montage_a/mapflow/_montage_a0".
201113-00:57:53,874 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:56,792 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:57:56,796 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.montage_a".
201113-00:57:56,796 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:56,804 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:57,16 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_t1_edge_a/_scan_matching_run-2/_montage_a0/t1_edge_on_mean_func_in_t1_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_t1_edge_a/_scan_matching_run-2/_montage_a0/t1_edge_on_mean_func_in_t1_a.png
201113-00:57:57,39 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:57,41 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_matching_run-1/montage_s".
201113-00:57:57,47 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_matching_run-1/montage_s/mapflow/_montage_s0".
201113-00:57:57,52 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:59,648 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:57:59,653 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.montage_s".
201113-00:57:59,654 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:59,663 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:59,874 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_t1_edge_s/_scan_matching_run-1/_montage_s0/t1_edge_on_mean_func_in_t1_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_t1_edge_s/_scan_matching_run-1/_montage_s0/t1_edge_on_mean_func_in_t1_s.png
201113-00:57:59,896 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:59,898 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_matching_run-1/montage_a".
201113-00:57:59,906 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_anat_0/_scan_matching_run-1/montage_a/mapflow/_montage_a0".
201113-00:57:59,911 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:58:02,617 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:58:02,620 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_anat_0.montage_a".
201113-00:58:02,621 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:58:02,628 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:58:02,842 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_t1_edge_a/_scan_matching_run-1/_montage_a0/t1_edge_on_mean_func_in_t1_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_t1_edge_a/_scan_matching_run-1/_montage_a0/t1_edge_on_mean_func_in_t1_a.png
201113-00:58:02,861 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:58:02,863 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_estimate_filter_info_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/sinker_0_motion_estimate_filter_info_plot".
201113-00:58:02,870 nipype.workflow INFO:
[Node] Running "sinker_0_motion_estimate_filter_info_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:58:03,107 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_estimate_filter_info_plot".
201113-00:58:03,109 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_estimate_filter_info_design" in "/outputs/tmp/resting_preproc_sub-181_ses-1/sinker_0_motion_estimate_filter_info_design".
201113-00:58:03,115 nipype.workflow INFO:
[Node] Running "sinker_0_motion_estimate_filter_info_design" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:58:03,348 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_estimate_filter_info_design".
201113-00:58:03,350 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.check_for_s3_lateral_ventricles_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/check_for_s3_lateral_ventricles_mask".
201113-00:58:03,356 nipype.workflow INFO:
[Node] Running "check_for_s3_lateral_ventricles_mask" ("CPAC.utils.interfaces.function.Function")
201113-00:58:03,590 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.check_for_s3_lateral_ventricles_mask".
201113-00:58:03,591 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.resampled_template_brain_for_func_derivative" in "/outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_brain_for_func_derivative".
201113-00:58:03,596 nipype.workflow INFO:
[Node] Running "resampled_template_brain_for_func_derivative" ("CPAC.utils.interfaces.function.Function")
201113-00:58:03,871 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.resampled_template_brain_for_func_derivative".
201113-00:58:03,873 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.resampled_template_brain_for_func_preproc" in "/outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_brain_for_func_preproc".
201113-00:58:03,877 nipype.workflow INFO:
[Node] Running "resampled_template_brain_for_func_preproc" ("CPAC.utils.interfaces.function.Function")
201113-00:58:04,116 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.resampled_template_brain_for_func_preproc".
201113-00:58:04,118 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.func_template_edge_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/func_template_edge_0".
201113-00:58:04,122 nipype.workflow INFO:
[Node] Running "func_template_edge_0" ("CPAC.utils.interfaces.function.Function")
201113-00:58:04,679 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.func_template_edge_0".
201113-00:58:04,681 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.resample_o" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/resample_o".
201113-00:58:04,686 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:58:05,145 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.resample_o".
201113-00:58:05,147 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.resampled_template_skull_for_func_derivative" in "/outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_func_derivative".
201113-00:58:05,152 nipype.workflow INFO:
[Node] Running "resampled_template_skull_for_func_derivative" ("CPAC.utils.interfaces.function.Function")
201113-00:58:05,364 nipype.workflow INFO:
[Node] Setting-up "template_skull_for_func_derivative" in "/outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative".
201113-00:58:05,371 nipype.workflow INFO:
[Node] Running "template_skull_for_func_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference.nii.gz
201113-00:58:06,168 nipype.workflow INFO:
[Node] Finished "template_skull_for_func_derivative".
201113-00:58:06,188 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.resampled_template_skull_for_func_derivative".
201113-00:58:06,190 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.resampled_template_skull_for_func_preproc" in "/outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_func_preproc".
201113-00:58:06,194 nipype.workflow INFO:
[Node] Running "resampled_template_skull_for_func_preproc" ("CPAC.utils.interfaces.function.Function")
201113-00:58:06,406 nipype.workflow INFO:
[Node] Setting-up "template_skull_for_func_preproc" in "/outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc".
201113-00:58:06,412 nipype.workflow INFO:
[Node] Running "template_skull_for_func_preproc" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference.nii.gz
201113-00:58:07,122 nipype.workflow INFO:
[Node] Finished "template_skull_for_func_preproc".
201113-00:58:07,139 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.resampled_template_skull_for_func_preproc".
201113-00:58:07,141 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.check_for_s3_PRIORS_WHITE" in "/outputs/tmp/resting_preproc_sub-181_ses-1/check_for_s3_PRIORS_WHITE".
201113-00:58:07,146 nipype.workflow INFO:
[Node] Running "check_for_s3_PRIORS_WHITE" ("CPAC.utils.interfaces.function.Function")
201113-00:58:07,383 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.check_for_s3_PRIORS_WHITE".
201113-00:58:07,384 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.check_for_s3_PRIORS_GRAY" in "/outputs/tmp/resting_preproc_sub-181_ses-1/check_for_s3_PRIORS_GRAY".
201113-00:58:07,388 nipype.workflow INFO:
[Node] Running "check_for_s3_PRIORS_GRAY" ("CPAC.utils.interfaces.function.Function")
201113-00:58:07,620 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.check_for_s3_PRIORS_GRAY".
201113-00:58:07,622 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.check_for_s3_PRIORS_CSF" in "/outputs/tmp/resting_preproc_sub-181_ses-1/check_for_s3_PRIORS_CSF".
201113-00:58:07,625 nipype.workflow INFO:
[Node] Running "check_for_s3_PRIORS_CSF" ("CPAC.utils.interfaces.function.Function")
201113-00:58:07,856 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.check_for_s3_PRIORS_CSF".
201113-00:58:07,858 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.resampled_template_skull_for_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_anat".
201113-00:58:07,863 nipype.workflow INFO:
[Node] Running "resampled_template_skull_for_anat" ("CPAC.utils.interfaces.function.Function")
201113-00:58:08,73 nipype.workflow INFO:
[Node] Setting-up "template_skull_for_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_anat/template_skull_for_anat".
201113-00:58:08,79 nipype.workflow INFO:
[Node] Running "template_skull_for_anat" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix mni_icbm152_t1_tal_nlin_asym_09c_resample.nii.gz -rmode Cu -dxyz 1.000000 1.000000 1.000000 -inset /outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_anat/template_skull_for_anat/mni_icbm152_t1_tal_nlin_asym_09c.nii
201113-00:58:08,384 nipype.interface INFO:
stderr 2020-11-13T00:58:08.384394:** AFNI converts NIFTI_datatype=4 (INT16) in file /outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_anat/template_skull_for_anat/mni_icbm152_t1_tal_nlin_asym_09c.nii to FLOAT32
201113-00:58:08,384 nipype.interface INFO:
stderr 2020-11-13T00:58:08.384831: Warnings of this type will be muted for this session.
201113-00:58:08,384 nipype.interface INFO:
stderr 2020-11-13T00:58:08.384831: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-00:58:11,69 nipype.workflow INFO:
[Node] Finished "template_skull_for_anat".
201113-00:58:11,88 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.resampled_template_skull_for_anat".
201113-00:58:11,90 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.resampled_template_brain_for_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_brain_for_anat".
201113-00:58:11,95 nipype.workflow INFO:
[Node] Running "resampled_template_brain_for_anat" ("CPAC.utils.interfaces.function.Function")
201113-00:58:11,311 nipype.workflow INFO:
[Node] Setting-up "template_brain_for_anat" in "/outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_brain_for_anat/template_brain_for_anat".
201113-00:58:11,317 nipype.workflow INFO:
[Node] Running "template_brain_for_anat" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix tpl-MNI152NLin2009cAsym_res-01_desc-brain_T1w_resample.nii.gz -rmode Cu -dxyz 1.000000 1.000000 1.000000 -inset /outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_brain_for_anat/template_brain_for_anat/tpl-MNI152NLin2009cAsym_res-01_desc-brain_T1w.nii.gz
201113-00:58:13,154 nipype.workflow INFO:
[Node] Finished "template_brain_for_anat".
201113-00:58:13,172 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.resampled_template_brain_for_anat".
201113-00:58:13,173 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_mni_ants_register_0.calc_ants_warp" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp".
201113-00:58:13,184 nipype.workflow INFO:
[Node] Running "calc_ants_warp" ("nipype.interfaces.utility.wrappers.Function")
201113-04:34:23,380 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_mni_ants_register_0.calc_ants_warp".
201113-04:34:23,464 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mni_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mni_anat_0/resample_u".
201113-04:34:23,476 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-04:34:24,779 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mni_anat_0.resample_u".
201113-04:34:24,781 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_anatomical_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/sinker_0_anatomical_to_standard".
201113-04:34:24,799 nipype.workflow INFO:
[Node] Running "sinker_0_anatomical_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:34:25,33 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_anatomical_to_standard".
201113-04:34:25,35 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_mni_ants_register_0.select_inverse_warp" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/select_inverse_warp".
201113-04:34:25,48 nipype.workflow INFO:
[Node] Running "select_inverse_warp" ("nipype.interfaces.utility.wrappers.Function")
201113-04:34:25,282 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_mni_ants_register_0.select_inverse_warp".
201113-04:34:25,288 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mni_to_anatomical_nonlinear_xfm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/sinker_0_mni_to_anatomical_nonlinear_xfm".
201113-04:34:25,296 nipype.workflow INFO:
[Node] Running "sinker_0_mni_to_anatomical_nonlinear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:34:25,531 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mni_to_anatomical_nonlinear_xfm".
201113-04:34:25,533 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_mni_ants_register_0.select_forward_warp" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/select_forward_warp".
201113-04:34:25,547 nipype.workflow INFO:
[Node] Running "select_forward_warp" ("nipype.interfaces.utility.wrappers.Function")
201113-04:34:25,802 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_mni_ants_register_0.select_forward_warp".
201113-04:34:25,804 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_anatomical_to_mni_nonlinear_xfm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/sinker_0_anatomical_to_mni_nonlinear_xfm".
201113-04:34:25,812 nipype.workflow INFO:
[Node] Running "sinker_0_anatomical_to_mni_nonlinear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:34:26,45 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_anatomical_to_mni_nonlinear_xfm".
201113-04:34:26,46 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_mni_ants_register_0.select_forward_affine" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/select_forward_affine".
201113-04:34:26,83 nipype.workflow INFO:
[Node] Running "select_forward_affine" ("nipype.interfaces.utility.wrappers.Function")
201113-04:34:26,314 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_mni_ants_register_0.select_forward_affine".
201113-04:34:26,316 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_ants_affine_xfm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/sinker_0_ants_affine_xfm".
201113-04:34:26,324 nipype.workflow INFO:
[Node] Running "sinker_0_ants_affine_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:34:26,562 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_ants_affine_xfm".
201113-04:34:26,564 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_mni_ants_register_0.select_forward_rigid" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/select_forward_rigid".
201113-04:34:26,577 nipype.workflow INFO:
[Node] Running "select_forward_rigid" ("nipype.interfaces.utility.wrappers.Function")
201113-04:34:26,810 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_mni_ants_register_0.select_forward_rigid".
201113-04:34:26,812 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_ants_rigid_xfm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/sinker_0_ants_rigid_xfm".
201113-04:34:26,820 nipype.workflow INFO:
[Node] Running "sinker_0_ants_rigid_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:34:27,56 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_ants_rigid_xfm".
201113-04:34:27,58 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_mni_ants_register_0.select_forward_initial" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/select_forward_initial".
201113-04:34:27,71 nipype.workflow INFO:
[Node] Running "select_forward_initial" ("nipype.interfaces.utility.wrappers.Function")
201113-04:34:27,308 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_mni_ants_register_0.select_forward_initial".
201113-04:34:27,310 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-04:34:27,352 nipype.workflow INFO:
[Node] Running "collect_transforms_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.base.Merge")
201113-04:34:27,590 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-04:34:27,592 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-04:34:27,596 nipype.workflow INFO:
[Node] Running "check_transformsfunctional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-04:34:27,836 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-04:34:27,838 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-04:34:27,894 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_freq_filtered_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/bandpassed_demeaned_filtered.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output bandpassed_demeaned_filtered_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-04:34:31,62 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-04:34:31,64 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0".
201113-04:34:31,90 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-04:45:17,98 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_to_standard__t1_0".
201113-04:45:17,121 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-04:45:17,151 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-04:45:17,643 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.resample_functional_roi_0".
201113-04:45:17,645 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-04:45:17,685 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-04:45:23,644 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats".
201113-04:45:23,646 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-04:45:23,652 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-04:45:23,902 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv".
201113-04:45:23,904 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-04:45:23,950 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-04:45:23,986 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-04:45:24,526 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-04:45:24,531 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.ndmg_graphs_0".
201113-04:45:24,531 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-04:45:24,539 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:45:24,774 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph".
201113-04:45:24,776 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-04:45:24,781 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-04:45:25,17 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz".
201113-04:45:25,18 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-04:45:25,52 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:45:25,286 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries".
201113-04:45:25,288 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-04:45:25,338 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-04:45:25,807 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.resample_functional_roi_0".
201113-04:45:25,809 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-04:45:25,817 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-04:45:31,727 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats".
201113-04:45:31,730 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-04:45:31,735 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-04:45:31,985 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv".
201113-04:45:31,987 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-04:45:32,32 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-04:45:32,70 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-04:45:32,598 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-04:45:32,607 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.ndmg_graphs_0".
201113-04:45:32,607 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-04:45:32,617 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:45:32,852 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph".
201113-04:45:32,872 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-04:45:32,877 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-04:45:33,111 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz".
201113-04:45:33,113 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-04:45:33,120 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:45:33,351 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries".
201113-04:45:33,353 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard".
201113-04:45:33,360 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:45:33,592 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard".
201113-04:45:33,593 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.write_composite_xfm_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/write_composite_xfm_functional_to_standard__t1_0".
201113-04:45:33,601 nipype.workflow INFO:
[Node] Running "write_composite_xfm_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output [ func_to_standard_xfm.nii.gz, 1 ] --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-04:55:59,126 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.write_composite_xfm_functional_to_standard__t1_0".
201113-04:55:59,139 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard_xfm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard_xfm".
201113-04:55:59,150 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:55:59,381 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard_xfm".
201113-04:55:59,382 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-04:55:59,416 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-04:56:02,378 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-04:56:02,380 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/apply_ants_warp_motion_correct_to_standard__t1_0".
201113-04:56:02,519 nipype.workflow INFO:
[Node] Running "apply_ants_warp_motion_correct_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-05:06:51,168 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0".
201113-05:06:51,171 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_correct_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_motion_correct_to_standard".
201113-05:06:51,181 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:06:51,414 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_correct_to_standard".
201113-05:06:51,439 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-05:06:51,449 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-05:06:58,609 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-05:06:58,612 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard__t1_0".
201113-05:06:58,621 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-05:07:05,673 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0".
201113-05:07:05,675 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.resample_u" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_tgng_run-3/resample_u".
201113-05:07:05,681 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-05:07:06,391 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.resample_u".
201113-05:07:06,393 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_tgng_run-3/montage_s".
201113-05:07:06,426 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_tgng_run-3/montage_s/mapflow/_montage_s0".
201113-05:07:06,431 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-05:07:08,269 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-05:07:08,274 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_s".
201113-05:07:08,275 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_qc___mean_func_with_mni_edge_s".
201113-05:07:08,283 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:07:08,493 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_mni_edge_s/_scan_tgng_run-3/_montage_s0/MNI_edge_on_mean_func_mni_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_mni_edge_s/_scan_tgng_run-3/_montage_s0/MNI_edge_on_mean_func_mni_s.png
201113-05:07:08,532 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_s".
201113-05:07:08,534 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_tgng_run-3/montage_a".
201113-05:07:08,542 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_tgng_run-3/montage_a/mapflow/_montage_a0".
201113-05:07:08,546 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-05:07:10,662 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-05:07:10,666 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_a".
201113-05:07:10,666 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_qc___mean_func_with_mni_edge_a".
201113-05:07:10,674 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:07:10,886 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_mni_edge_a/_scan_tgng_run-3/_montage_a0/MNI_edge_on_mean_func_mni_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_mni_edge_a/_scan_tgng_run-3/_montage_a0/MNI_edge_on_mean_func_mni_a.png
201113-05:07:10,904 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_a".
201113-05:07:10,905 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-3/csf_resample".
201113-05:07:10,930 nipype.workflow INFO:
[Node] Running "csf_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_csf_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-3/csf_resample/avg152T1_csf_bin.nii.gz
201113-05:07:11,202 nipype.interface INFO:
stderr 2020-11-13T05:07:11.202314:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-05:07:11,202 nipype.interface INFO:
stderr 2020-11-13T05:07:11.202709: Warnings of this type will be muted for this session.
201113-05:07:11,202 nipype.interface INFO:
stderr 2020-11-13T05:07:11.202709: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-05:07:11,470 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_resample".
201113-05:07:11,473 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-3/csf_mask".
201113-05:07:11,478 nipype.workflow INFO:
[Node] Running "csf_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-3/csf_resample/avg152T1_csf_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_csf_bin_resample_calc.nii
201113-05:07:11,738 nipype.interface INFO:
stderr 2020-11-13T05:07:11.738369:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-05:07:11,738 nipype.interface INFO:
stderr 2020-11-13T05:07:11.738840:++ Authored by: A cast of thousands
201113-05:07:11,860 nipype.interface INFO:
stderr 2020-11-13T05:07:11.860021:++ Output dataset ./avg152T1_csf_bin_resample_calc.nii
201113-05:07:12,40 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_mask".
201113-05:07:12,42 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-3/wm_resample".
201113-05:07:12,73 nipype.workflow INFO:
[Node] Running "wm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_white_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-3/wm_resample/avg152T1_white_bin.nii.gz
201113-05:07:12,330 nipype.interface INFO:
stderr 2020-11-13T05:07:12.330752:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-05:07:12,331 nipype.interface INFO:
stderr 2020-11-13T05:07:12.331223: Warnings of this type will be muted for this session.
201113-05:07:12,331 nipype.interface INFO:
stderr 2020-11-13T05:07:12.331223: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-05:07:12,549 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_resample".
201113-05:07:12,550 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-3/wm_mask".
201113-05:07:12,556 nipype.workflow INFO:
[Node] Running "wm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-3/wm_resample/avg152T1_white_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_white_bin_resample_calc.nii
201113-05:07:12,814 nipype.interface INFO:
stderr 2020-11-13T05:07:12.814453:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-05:07:12,814 nipype.interface INFO:
stderr 2020-11-13T05:07:12.814937:++ Authored by: A cast of thousands
201113-05:07:12,912 nipype.interface INFO:
stderr 2020-11-13T05:07:12.912343:++ Output dataset ./avg152T1_white_bin_resample_calc.nii
201113-05:07:13,96 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_mask".
201113-05:07:13,102 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-3/gm_resample".
201113-05:07:13,133 nipype.workflow INFO:
[Node] Running "gm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_gray_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-3/gm_resample/avg152T1_gray_bin.nii.gz
201113-05:07:13,399 nipype.interface INFO:
stderr 2020-11-13T05:07:13.399612:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-05:07:13,400 nipype.interface INFO:
stderr 2020-11-13T05:07:13.400150: Warnings of this type will be muted for this session.
201113-05:07:13,400 nipype.interface INFO:
stderr 2020-11-13T05:07:13.400150: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-05:07:13,662 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_resample".
201113-05:07:13,663 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-3/gm_mask".
201113-05:07:13,669 nipype.workflow INFO:
[Node] Running "gm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-3/gm_resample/avg152T1_gray_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_gray_bin_resample_calc.nii
201113-05:07:13,930 nipype.interface INFO:
stderr 2020-11-13T05:07:13.930228:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-05:07:13,930 nipype.interface INFO:
stderr 2020-11-13T05:07:13.930733:++ Authored by: A cast of thousands
201113-05:07:14,26 nipype.interface INFO:
stderr 2020-11-13T05:07:14.026428:++ Output dataset ./avg152T1_gray_bin_resample_calc.nii
201113-05:07:14,223 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_mask".
201113-05:07:14,225 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.carpet_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_plot".
201113-05:07:14,232 nipype.workflow INFO:
[Node] Running "carpet_plot" ("CPAC.utils.interfaces.function.Function")
201113-05:07:20,168 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.carpet_plot".
201113-05:07:20,171 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___carpet" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_qc___carpet".
201113-05:07:20,178 nipype.workflow INFO:
[Node] Running "sinker_0_qc___carpet" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:07:20,390 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___carpet/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/carpet/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png
201113-05:07:20,408 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___carpet".
201113-05:07:20,410 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_mean_functional_to_standard".
201113-05:07:20,417 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:07:20,648 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_to_standard".
201113-05:07:20,650 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-05:07:20,704 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-05:07:23,322 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-05:07:23,324 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-05:07:23,350 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-181_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-05:07:25,909 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-05:07:25,911 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/sinker_0_functional_brain_mask_to_standard".
201113-05:07:25,920 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:07:26,156 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask_to_standard".
201113-05:07:26,158 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-3/inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-05:07:26,188 nipype.workflow INFO:
[Node] Running "inverse_transform_flags_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-05:07:26,423 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-05:07:26,424 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-05:07:26,452 nipype.workflow INFO:
[Node] Running "collect_transforms_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.base.Merge")
201113-05:07:26,682 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-05:07:26,703 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-05:07:26,709 nipype.workflow INFO:
[Node] Running "check_transformsfunctional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-05:07:26,943 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-05:07:26,945 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-05:07:26,982 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_freq_filtered_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/bandpassed_demeaned_filtered.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output bandpassed_demeaned_filtered_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:07:29,942 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-05:07:29,944 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0".
201113-05:07:29,985 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:18:10,951 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_to_standard__t1_0".
201113-05:18:10,979 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-05:18:11,10 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-05:18:11,485 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.resample_functional_roi_0".
201113-05:18:11,488 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-05:18:11,495 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-05:18:17,498 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats".
201113-05:18:17,500 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-05:18:17,505 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-05:18:17,759 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv".
201113-05:18:17,761 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-05:18:17,805 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-05:18:17,843 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-05:18:18,386 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-05:18:18,391 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.ndmg_graphs_0".
201113-05:18:18,392 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-05:18:18,400 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:18:18,639 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph".
201113-05:18:18,641 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-05:18:18,647 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-05:18:18,883 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz".
201113-05:18:18,885 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-05:18:18,892 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:18:19,126 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries".
201113-05:18:19,128 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-05:18:19,135 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-05:18:19,599 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.resample_functional_roi_0".
201113-05:18:19,601 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-05:18:19,608 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-05:18:25,495 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats".
201113-05:18:25,498 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-05:18:25,504 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-05:18:25,758 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv".
201113-05:18:25,760 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-05:18:25,803 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-05:18:25,841 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-05:18:26,376 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-05:18:26,381 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.ndmg_graphs_0".
201113-05:18:26,382 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-05:18:26,389 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:18:26,626 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph".
201113-05:18:26,628 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-05:18:26,634 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-05:18:26,873 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz".
201113-05:18:26,875 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-05:18:26,884 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:18:27,118 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries".
201113-05:18:27,120 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard".
201113-05:18:27,129 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:18:27,360 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard".
201113-05:18:27,393 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.write_composite_xfm_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/write_composite_xfm_functional_to_standard__t1_0".
201113-05:18:27,401 nipype.workflow INFO:
[Node] Running "write_composite_xfm_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output [ func_to_standard_xfm.nii.gz, 1 ] --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:28:48,960 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.write_composite_xfm_functional_to_standard__t1_0".
201113-05:28:48,963 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard_xfm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard_xfm".
201113-05:28:48,971 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:28:49,204 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard_xfm".
201113-05:28:49,206 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-05:28:49,215 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:28:52,194 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-05:28:52,196 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/apply_ants_warp_motion_correct_to_standard__t1_0".
201113-05:28:52,316 nipype.workflow INFO:
[Node] Running "apply_ants_warp_motion_correct_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:39:41,171 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0".
201113-05:39:41,195 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_correct_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_motion_correct_to_standard".
201113-05:39:41,204 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:39:41,435 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_correct_to_standard".
201113-05:39:41,437 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-05:39:41,448 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:39:48,542 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-05:39:48,544 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard__t1_0".
201113-05:39:48,553 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:39:55,619 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0".
201113-05:39:55,621 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.resample_u" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_tgng_run-2/resample_u".
201113-05:39:55,627 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-05:39:56,340 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.resample_u".
201113-05:39:56,342 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_tgng_run-2/montage_s".
201113-05:39:56,350 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_tgng_run-2/montage_s/mapflow/_montage_s0".
201113-05:39:56,354 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-05:39:58,170 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-05:39:58,174 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_s".
201113-05:39:58,175 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_qc___mean_func_with_mni_edge_s".
201113-05:39:58,183 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:39:58,394 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_mni_edge_s/_scan_tgng_run-2/_montage_s0/MNI_edge_on_mean_func_mni_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_mni_edge_s/_scan_tgng_run-2/_montage_s0/MNI_edge_on_mean_func_mni_s.png
201113-05:39:58,415 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_s".
201113-05:39:58,417 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_tgng_run-2/montage_a".
201113-05:39:58,425 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_tgng_run-2/montage_a/mapflow/_montage_a0".
201113-05:39:58,430 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-05:40:00,534 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-05:40:00,539 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_a".
201113-05:40:00,540 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_qc___mean_func_with_mni_edge_a".
201113-05:40:00,548 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:40:00,759 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_mni_edge_a/_scan_tgng_run-2/_montage_a0/MNI_edge_on_mean_func_mni_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_mni_edge_a/_scan_tgng_run-2/_montage_a0/MNI_edge_on_mean_func_mni_a.png
201113-05:40:00,781 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_a".
201113-05:40:00,782 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-2/csf_resample".
201113-05:40:00,790 nipype.workflow INFO:
[Node] Running "csf_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_csf_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-2/csf_resample/avg152T1_csf_bin.nii.gz
201113-05:40:01,56 nipype.interface INFO:
stderr 2020-11-13T05:40:01.056296:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-05:40:01,57 nipype.interface INFO:
stderr 2020-11-13T05:40:01.057844: Warnings of this type will be muted for this session.
201113-05:40:01,58 nipype.interface INFO:
stderr 2020-11-13T05:40:01.057844: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-05:40:01,339 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_resample".
201113-05:40:01,341 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-2/csf_mask".
201113-05:40:01,346 nipype.workflow INFO:
[Node] Running "csf_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-2/csf_resample/avg152T1_csf_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_csf_bin_resample_calc.nii
201113-05:40:01,611 nipype.interface INFO:
stderr 2020-11-13T05:40:01.611718:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-05:40:01,612 nipype.interface INFO:
stderr 2020-11-13T05:40:01.612251:++ Authored by: A cast of thousands
201113-05:40:01,734 nipype.interface INFO:
stderr 2020-11-13T05:40:01.734716:++ Output dataset ./avg152T1_csf_bin_resample_calc.nii
201113-05:40:01,926 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_mask".
201113-05:40:01,928 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-2/wm_resample".
201113-05:40:01,936 nipype.workflow INFO:
[Node] Running "wm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_white_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-2/wm_resample/avg152T1_white_bin.nii.gz
201113-05:40:02,200 nipype.interface INFO:
stderr 2020-11-13T05:40:02.199886:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-05:40:02,200 nipype.interface INFO:
stderr 2020-11-13T05:40:02.200406: Warnings of this type will be muted for this session.
201113-05:40:02,200 nipype.interface INFO:
stderr 2020-11-13T05:40:02.200406: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-05:40:02,459 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_resample".
201113-05:40:02,462 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-2/wm_mask".
201113-05:40:02,469 nipype.workflow INFO:
[Node] Running "wm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-2/wm_resample/avg152T1_white_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_white_bin_resample_calc.nii
201113-05:40:02,732 nipype.interface INFO:
stderr 2020-11-13T05:40:02.732321:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-05:40:02,732 nipype.interface INFO:
stderr 2020-11-13T05:40:02.732796:++ Authored by: A cast of thousands
201113-05:40:02,864 nipype.interface INFO:
stderr 2020-11-13T05:40:02.864028:++ Output dataset ./avg152T1_white_bin_resample_calc.nii
201113-05:40:03,41 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_mask".
201113-05:40:03,43 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-2/gm_resample".
201113-05:40:03,53 nipype.workflow INFO:
[Node] Running "gm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_gray_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-2/gm_resample/avg152T1_gray_bin.nii.gz
201113-05:40:03,315 nipype.interface INFO:
stderr 2020-11-13T05:40:03.315347:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-05:40:03,315 nipype.interface INFO:
stderr 2020-11-13T05:40:03.315827: Warnings of this type will be muted for this session.
201113-05:40:03,315 nipype.interface INFO:
stderr 2020-11-13T05:40:03.315827: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-05:40:03,539 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_resample".
201113-05:40:03,541 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-2/gm_mask".
201113-05:40:03,547 nipype.workflow INFO:
[Node] Running "gm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-2/gm_resample/avg152T1_gray_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_gray_bin_resample_calc.nii
201113-05:40:03,810 nipype.interface INFO:
stderr 2020-11-13T05:40:03.810403:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-05:40:03,810 nipype.interface INFO:
stderr 2020-11-13T05:40:03.810904:++ Authored by: A cast of thousands
201113-05:40:03,907 nipype.interface INFO:
stderr 2020-11-13T05:40:03.906914:++ Output dataset ./avg152T1_gray_bin_resample_calc.nii
201113-05:40:04,94 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_mask".
201113-05:40:04,96 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.carpet_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_plot".
201113-05:40:04,103 nipype.workflow INFO:
[Node] Running "carpet_plot" ("CPAC.utils.interfaces.function.Function")
201113-05:40:10,95 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.carpet_plot".
201113-05:40:10,97 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___carpet" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_qc___carpet".
201113-05:40:10,105 nipype.workflow INFO:
[Node] Running "sinker_0_qc___carpet" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:40:10,318 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___carpet/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/carpet/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png
201113-05:40:10,341 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___carpet".
201113-05:40:10,342 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_mean_functional_to_standard".
201113-05:40:10,351 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:40:10,584 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_to_standard".
201113-05:40:10,585 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-05:40:10,621 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:40:13,206 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-05:40:13,209 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-05:40:13,219 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-181_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:40:15,774 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-05:40:15,776 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/sinker_0_functional_brain_mask_to_standard".
201113-05:40:15,785 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:40:16,16 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask_to_standard".
201113-05:40:16,17 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-2/inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-05:40:16,22 nipype.workflow INFO:
[Node] Running "inverse_transform_flags_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-05:40:16,250 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-05:40:16,252 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-05:40:16,326 nipype.workflow INFO:
[Node] Running "collect_transforms_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.base.Merge")
201113-05:40:16,560 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-05:40:16,562 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-05:40:16,566 nipype.workflow INFO:
[Node] Running "check_transformsfunctional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-05:40:16,800 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-05:40:16,802 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-05:40:16,840 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_freq_filtered_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/bandpassed_demeaned_filtered.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output bandpassed_demeaned_filtered_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-05:40:19,772 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-05:40:19,774 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0".
201113-05:40:19,806 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-05:51:01,818 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_to_standard__t1_0".
201113-05:51:01,821 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-05:51:01,832 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-05:51:02,305 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.resample_functional_roi_0".
201113-05:51:02,307 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-05:51:02,313 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-05:51:08,270 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats".
201113-05:51:08,272 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-05:51:08,279 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-05:51:08,531 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv".
201113-05:51:08,534 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-05:51:08,581 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-05:51:08,621 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-05:51:09,160 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-05:51:09,165 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.ndmg_graphs_0".
201113-05:51:09,165 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-05:51:09,173 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:51:09,403 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph".
201113-05:51:09,404 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-05:51:09,409 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-05:51:09,642 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz".
201113-05:51:09,643 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-05:51:09,651 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:51:09,884 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries".
201113-05:51:09,885 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-05:51:09,893 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-05:51:10,359 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.resample_functional_roi_0".
201113-05:51:10,361 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-05:51:10,368 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-05:51:16,253 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats".
201113-05:51:16,255 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-05:51:16,259 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-05:51:16,509 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv".
201113-05:51:16,511 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-05:51:16,556 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-05:51:16,590 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-05:51:17,115 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-05:51:17,120 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.ndmg_graphs_0".
201113-05:51:17,120 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-05:51:17,128 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:51:17,365 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph".
201113-05:51:17,367 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-05:51:17,372 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-05:51:17,618 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz".
201113-05:51:17,620 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-05:51:17,628 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:51:17,865 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries".
201113-05:51:17,868 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard".
201113-05:51:17,877 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:51:18,113 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard".
201113-05:51:18,117 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.write_composite_xfm_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/write_composite_xfm_functional_to_standard__t1_0".
201113-05:51:18,128 nipype.workflow INFO:
[Node] Running "write_composite_xfm_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output [ func_to_standard_xfm.nii.gz, 1 ] --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-06:01:39,285 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.write_composite_xfm_functional_to_standard__t1_0".
201113-06:01:39,288 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard_xfm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard_xfm".
201113-06:01:39,296 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:01:39,529 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard_xfm".
201113-06:01:39,531 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-06:01:39,539 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-06:01:42,462 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-06:01:42,464 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/apply_ants_warp_motion_correct_to_standard__t1_0".
201113-06:01:42,632 nipype.workflow INFO:
[Node] Running "apply_ants_warp_motion_correct_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-06:12:31,658 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0".
201113-06:12:31,661 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_correct_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_motion_correct_to_standard".
201113-06:12:31,670 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:12:31,901 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_correct_to_standard".
201113-06:12:31,903 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-06:12:31,942 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-06:12:39,58 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-06:12:39,61 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard__t1_0".
201113-06:12:39,69 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-06:12:46,115 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0".
201113-06:12:46,118 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.resample_u" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_tgng_run-1/resample_u".
201113-06:12:46,124 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-06:12:46,840 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.resample_u".
201113-06:12:46,842 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_tgng_run-1/montage_s".
201113-06:12:46,850 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_tgng_run-1/montage_s/mapflow/_montage_s0".
201113-06:12:46,855 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-06:12:48,738 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-06:12:48,742 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_s".
201113-06:12:48,742 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_qc___mean_func_with_mni_edge_s".
201113-06:12:48,750 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:12:48,963 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_mni_edge_s/_scan_tgng_run-1/_montage_s0/MNI_edge_on_mean_func_mni_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_mni_edge_s/_scan_tgng_run-1/_montage_s0/MNI_edge_on_mean_func_mni_s.png
201113-06:12:48,985 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_s".
201113-06:12:48,986 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_tgng_run-1/montage_a".
201113-06:12:48,993 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_tgng_run-1/montage_a/mapflow/_montage_a0".
201113-06:12:48,998 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-06:12:51,75 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-06:12:51,78 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_a".
201113-06:12:51,79 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_qc___mean_func_with_mni_edge_a".
201113-06:12:51,86 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:12:51,299 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_mni_edge_a/_scan_tgng_run-1/_montage_a0/MNI_edge_on_mean_func_mni_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_mni_edge_a/_scan_tgng_run-1/_montage_a0/MNI_edge_on_mean_func_mni_a.png
201113-06:12:51,321 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_a".
201113-06:12:51,323 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-1/csf_resample".
201113-06:12:51,330 nipype.workflow INFO:
[Node] Running "csf_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_csf_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-1/csf_resample/avg152T1_csf_bin.nii.gz
201113-06:12:51,598 nipype.interface INFO:
stderr 2020-11-13T06:12:51.598653:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-06:12:51,599 nipype.interface INFO:
stderr 2020-11-13T06:12:51.599506: Warnings of this type will be muted for this session.
201113-06:12:51,599 nipype.interface INFO:
stderr 2020-11-13T06:12:51.599506: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-06:12:51,871 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_resample".
201113-06:12:51,873 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-1/csf_mask".
201113-06:12:51,879 nipype.workflow INFO:
[Node] Running "csf_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-1/csf_resample/avg152T1_csf_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_csf_bin_resample_calc.nii
201113-06:12:52,139 nipype.interface INFO:
stderr 2020-11-13T06:12:52.139112:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-06:12:52,139 nipype.interface INFO:
stderr 2020-11-13T06:12:52.139616:++ Authored by: A cast of thousands
201113-06:12:52,265 nipype.interface INFO:
stderr 2020-11-13T06:12:52.265720:++ Output dataset ./avg152T1_csf_bin_resample_calc.nii
201113-06:12:52,459 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_mask".
201113-06:12:52,461 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-1/wm_resample".
201113-06:12:52,471 nipype.workflow INFO:
[Node] Running "wm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_white_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-1/wm_resample/avg152T1_white_bin.nii.gz
201113-06:12:52,739 nipype.interface INFO:
stderr 2020-11-13T06:12:52.739209:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-06:12:52,739 nipype.interface INFO:
stderr 2020-11-13T06:12:52.739919: Warnings of this type will be muted for this session.
201113-06:12:52,740 nipype.interface INFO:
stderr 2020-11-13T06:12:52.739919: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-06:12:52,988 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_resample".
201113-06:12:52,991 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-1/wm_mask".
201113-06:12:52,997 nipype.workflow INFO:
[Node] Running "wm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-1/wm_resample/avg152T1_white_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_white_bin_resample_calc.nii
201113-06:12:53,258 nipype.interface INFO:
stderr 2020-11-13T06:12:53.257908:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-06:12:53,258 nipype.interface INFO:
stderr 2020-11-13T06:12:53.258690:++ Authored by: A cast of thousands
201113-06:12:53,385 nipype.interface INFO:
stderr 2020-11-13T06:12:53.385821:++ Output dataset ./avg152T1_white_bin_resample_calc.nii
201113-06:12:53,579 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_mask".
201113-06:12:53,581 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-1/gm_resample".
201113-06:12:53,589 nipype.workflow INFO:
[Node] Running "gm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_gray_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-1/gm_resample/avg152T1_gray_bin.nii.gz
201113-06:12:53,847 nipype.interface INFO:
stderr 2020-11-13T06:12:53.847442:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-06:12:53,847 nipype.interface INFO:
stderr 2020-11-13T06:12:53.847937: Warnings of this type will be muted for this session.
201113-06:12:53,848 nipype.interface INFO:
stderr 2020-11-13T06:12:53.847937: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-06:12:54,105 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_resample".
201113-06:12:54,106 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-1/gm_mask".
201113-06:12:54,112 nipype.workflow INFO:
[Node] Running "gm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-1/gm_resample/avg152T1_gray_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_gray_bin_resample_calc.nii
201113-06:12:54,373 nipype.interface INFO:
stderr 2020-11-13T06:12:54.373319:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-06:12:54,373 nipype.interface INFO:
stderr 2020-11-13T06:12:54.373849:++ Authored by: A cast of thousands
201113-06:12:54,481 nipype.interface INFO:
stderr 2020-11-13T06:12:54.481743:++ Output dataset ./avg152T1_gray_bin_resample_calc.nii
201113-06:12:54,677 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_mask".
201113-06:12:54,679 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.carpet_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_plot".
201113-06:12:54,687 nipype.workflow INFO:
[Node] Running "carpet_plot" ("CPAC.utils.interfaces.function.Function")
201113-06:13:00,655 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.carpet_plot".
201113-06:13:00,657 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___carpet" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_qc___carpet".
201113-06:13:00,666 nipype.workflow INFO:
[Node] Running "sinker_0_qc___carpet" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:13:00,878 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___carpet/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/carpet/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png
201113-06:13:00,901 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___carpet".
201113-06:13:00,903 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_mean_functional_to_standard".
201113-06:13:00,911 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:13:01,144 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_to_standard".
201113-06:13:01,146 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-06:13:01,170 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-06:13:03,751 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-06:13:03,753 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-06:13:03,761 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-181_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-06:13:06,322 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-06:13:06,324 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/sinker_0_functional_brain_mask_to_standard".
201113-06:13:06,331 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:13:06,571 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask_to_standard".
201113-06:13:06,573 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_tgng_run-1/inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-06:13:06,579 nipype.workflow INFO:
[Node] Running "inverse_transform_flags_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-06:13:06,812 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-06:13:06,813 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-06:13:06,868 nipype.workflow INFO:
[Node] Running "collect_transforms_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.base.Merge")
201113-06:13:07,103 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-06:13:07,105 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-06:13:07,109 nipype.workflow INFO:
[Node] Running "check_transformsfunctional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-06:13:07,345 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-06:13:07,347 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-06:13:07,381 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_freq_filtered_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/bandpassed_demeaned_filtered.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output bandpassed_demeaned_filtered_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/change_transform_type_0/updated_affine.txt
201113-06:13:10,93 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-06:13:10,95 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0".
201113-06:13:10,128 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/change_transform_type_0/updated_affine.txt
201113-06:30:10,970 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_to_standard__t1_0".
201113-06:30:10,973 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-06:30:10,981 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-06:30:11,520 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.resample_functional_roi_0".
201113-06:30:11,522 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-06:30:11,563 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-06:30:19,761 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats".
201113-06:30:19,763 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-06:30:19,783 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-06:30:20,26 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv".
201113-06:30:20,29 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-06:30:20,41 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-06:30:20,50 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-06:30:20,582 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-06:30:20,586 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.ndmg_graphs_0".
201113-06:30:20,586 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-06:30:20,594 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:30:20,831 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph".
201113-06:30:20,833 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-06:30:20,838 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-06:30:21,75 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz".
201113-06:30:21,77 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-06:30:21,98 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:30:21,333 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries".
201113-06:30:21,335 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-06:30:21,341 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-06:30:21,814 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.resample_functional_roi_0".
201113-06:30:21,816 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-06:30:21,822 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-06:30:29,971 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats".
201113-06:30:29,973 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-06:30:29,978 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-06:30:30,215 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv".
201113-06:30:30,217 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-06:30:30,227 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-06:30:30,234 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-06:30:30,755 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-06:30:30,760 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.ndmg_graphs_0".
201113-06:30:30,760 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-06:30:30,769 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:30:31,0 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph".
201113-06:30:31,2 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-06:30:31,7 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-06:30:31,244 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz".
201113-06:30:31,246 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-06:30:31,254 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:30:31,487 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries".
201113-06:30:31,490 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard".
201113-06:30:31,498 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:30:31,732 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard".
201113-06:30:31,734 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.write_composite_xfm_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/write_composite_xfm_functional_to_standard__t1_0".
201113-06:30:31,742 nipype.workflow INFO:
[Node] Running "write_composite_xfm_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output [ func_to_standard_xfm.nii.gz, 1 ] --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/change_transform_type_0/updated_affine.txt
201113-06:47:02,534 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.write_composite_xfm_functional_to_standard__t1_0".
201113-06:47:02,537 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard_xfm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard_xfm".
201113-06:47:02,546 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:47:02,781 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard_xfm".
201113-06:47:02,783 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-06:47:02,812 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/change_transform_type_0/updated_affine.txt
201113-06:47:05,507 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-06:47:05,510 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/apply_ants_warp_motion_correct_to_standard__t1_0".
201113-06:47:05,697 nipype.workflow INFO:
[Node] Running "apply_ants_warp_motion_correct_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/change_transform_type_0/updated_affine.txt
201113-07:04:22,112 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0".
201113-07:04:22,115 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_correct_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_motion_correct_to_standard".
201113-07:04:22,124 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:04:22,359 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_correct_to_standard".
201113-07:04:22,382 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-07:04:22,420 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/change_transform_type_0/updated_affine.txt
201113-07:04:30,311 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-07:04:30,313 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/apply_ants_warp_mean_functional_to_standard__t1_0".
201113-07:04:30,322 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/change_transform_type_0/updated_affine.txt
201113-07:04:38,195 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0".
201113-07:04:38,197 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.resample_u" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_rest_run-1/resample_u".
201113-07:04:38,203 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-07:04:38,952 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.resample_u".
201113-07:04:38,953 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_rest_run-1/montage_s".
201113-07:04:38,960 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_rest_run-1/montage_s/mapflow/_montage_s0".
201113-07:04:38,965 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-07:04:40,842 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-07:04:40,846 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_s".
201113-07:04:40,847 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_qc___mean_func_with_mni_edge_s".
201113-07:04:40,855 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:04:41,69 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_mni_edge_s/_scan_rest_run-1/_montage_s0/MNI_edge_on_mean_func_mni_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_mni_edge_s/_scan_rest_run-1/_montage_s0/MNI_edge_on_mean_func_mni_s.png
201113-07:04:41,91 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_s".
201113-07:04:41,93 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_rest_run-1/montage_a".
201113-07:04:41,101 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_rest_run-1/montage_a/mapflow/_montage_a0".
201113-07:04:41,106 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-07:04:43,247 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-07:04:43,251 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_a".
201113-07:04:43,252 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_qc___mean_func_with_mni_edge_a".
201113-07:04:43,259 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:04:43,471 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_mni_edge_a/_scan_rest_run-1/_montage_a0/MNI_edge_on_mean_func_mni_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_mni_edge_a/_scan_rest_run-1/_montage_a0/MNI_edge_on_mean_func_mni_a.png
201113-07:04:43,494 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_a".
201113-07:04:43,496 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_rest_run-1/csf_resample".
201113-07:04:43,504 nipype.workflow INFO:
[Node] Running "csf_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_csf_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_rest_run-1/csf_resample/avg152T1_csf_bin.nii.gz
201113-07:04:43,770 nipype.interface INFO:
stderr 2020-11-13T07:04:43.770824:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-07:04:43,771 nipype.interface INFO:
stderr 2020-11-13T07:04:43.771414: Warnings of this type will be muted for this session.
201113-07:04:43,771 nipype.interface INFO:
stderr 2020-11-13T07:04:43.771414: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-07:04:44,89 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_resample".
201113-07:04:44,91 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_rest_run-1/csf_mask".
201113-07:04:44,97 nipype.workflow INFO:
[Node] Running "csf_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_rest_run-1/csf_resample/avg152T1_csf_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_csf_bin_resample_calc.nii
201113-07:04:44,358 nipype.interface INFO:
stderr 2020-11-13T07:04:44.358868:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-07:04:44,359 nipype.interface INFO:
stderr 2020-11-13T07:04:44.359447:++ Authored by: A cast of thousands
201113-07:04:44,497 nipype.interface INFO:
stderr 2020-11-13T07:04:44.497147:++ Output dataset ./avg152T1_csf_bin_resample_calc.nii
201113-07:04:44,681 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_mask".
201113-07:04:44,707 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_rest_run-1/wm_resample".
201113-07:04:44,716 nipype.workflow INFO:
[Node] Running "wm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_white_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_rest_run-1/wm_resample/avg152T1_white_bin.nii.gz
201113-07:04:44,982 nipype.interface INFO:
stderr 2020-11-13T07:04:44.982834:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-07:04:44,983 nipype.interface INFO:
stderr 2020-11-13T07:04:44.983464: Warnings of this type will be muted for this session.
201113-07:04:44,983 nipype.interface INFO:
stderr 2020-11-13T07:04:44.983464: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-07:04:45,219 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_resample".
201113-07:04:45,221 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_rest_run-1/wm_mask".
201113-07:04:45,227 nipype.workflow INFO:
[Node] Running "wm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_rest_run-1/wm_resample/avg152T1_white_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_white_bin_resample_calc.nii
201113-07:04:45,491 nipype.interface INFO:
stderr 2020-11-13T07:04:45.491630:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-07:04:45,492 nipype.interface INFO:
stderr 2020-11-13T07:04:45.492227:++ Authored by: A cast of thousands
201113-07:04:45,588 nipype.interface INFO:
stderr 2020-11-13T07:04:45.588625:++ Output dataset ./avg152T1_white_bin_resample_calc.nii
201113-07:04:45,790 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_mask".
201113-07:04:45,792 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_rest_run-1/gm_resample".
201113-07:04:45,800 nipype.workflow INFO:
[Node] Running "gm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_gray_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_rest_run-1/gm_resample/avg152T1_gray_bin.nii.gz
201113-07:04:46,64 nipype.interface INFO:
stderr 2020-11-13T07:04:46.064056:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-07:04:46,64 nipype.interface INFO:
stderr 2020-11-13T07:04:46.064578: Warnings of this type will be muted for this session.
201113-07:04:46,64 nipype.interface INFO:
stderr 2020-11-13T07:04:46.064578: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-07:04:46,314 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_resample".
201113-07:04:46,316 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_rest_run-1/gm_mask".
201113-07:04:46,322 nipype.workflow INFO:
[Node] Running "gm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_rest_run-1/gm_resample/avg152T1_gray_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_gray_bin_resample_calc.nii
201113-07:04:46,583 nipype.interface INFO:
stderr 2020-11-13T07:04:46.583676:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-07:04:46,584 nipype.interface INFO:
stderr 2020-11-13T07:04:46.584469:++ Authored by: A cast of thousands
201113-07:04:46,713 nipype.interface INFO:
stderr 2020-11-13T07:04:46.712956:++ Output dataset ./avg152T1_gray_bin_resample_calc.nii
201113-07:04:46,909 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_mask".
201113-07:04:46,911 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.carpet_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_plot".
201113-07:04:46,919 nipype.workflow INFO:
[Node] Running "carpet_plot" ("CPAC.utils.interfaces.function.Function")
201113-07:04:55,50 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.carpet_plot".
201113-07:04:55,52 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___carpet" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_qc___carpet".
201113-07:04:55,60 nipype.workflow INFO:
[Node] Running "sinker_0_qc___carpet" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:04:55,272 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___carpet/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/carpet/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png
201113-07:04:55,291 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___carpet".
201113-07:04:55,293 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_mean_functional_to_standard".
201113-07:04:55,300 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:04:55,530 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_to_standard".
201113-07:04:55,531 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-07:04:55,559 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/change_transform_type_0/updated_affine.txt
201113-07:04:58,133 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-07:04:58,135 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-07:04:58,145 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-181_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/change_transform_type_0/updated_affine.txt
201113-07:05:00,727 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-07:05:00,730 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/sinker_0_functional_brain_mask_to_standard".
201113-07:05:00,739 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:05:00,976 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask_to_standard".
201113-07:05:00,978 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_rest_run-1/inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-07:05:00,985 nipype.workflow INFO:
[Node] Running "inverse_transform_flags_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-07:05:01,220 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-07:05:01,221 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-07:05:01,251 nipype.workflow INFO:
[Node] Running "collect_transforms_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.base.Merge")
201113-07:05:01,483 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-07:05:01,485 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-07:05:01,491 nipype.workflow INFO:
[Node] Running "check_transformsfunctional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-07:05:01,727 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-07:05:01,729 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-07:05:01,759 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_freq_filtered_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/bandpassed_demeaned_filtered.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output bandpassed_demeaned_filtered_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-07:05:04,725 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-07:05:04,728 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0".
201113-07:05:04,750 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-07:16:48,971 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_to_standard__t1_0".
201113-07:16:48,974 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-07:16:48,984 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-07:16:49,464 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.resample_functional_roi_0".
201113-07:16:49,466 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-07:16:49,483 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-07:16:56,1 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats".
201113-07:16:56,3 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-07:16:56,9 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-07:16:56,262 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv".
201113-07:16:56,264 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-07:16:56,314 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-07:16:56,356 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-07:16:56,897 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-07:16:56,901 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.ndmg_graphs_0".
201113-07:16:56,902 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-07:16:56,910 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:16:57,146 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph".
201113-07:16:57,148 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-07:16:57,153 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-07:16:57,389 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz".
201113-07:16:57,391 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-07:16:57,399 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:16:57,635 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries".
201113-07:16:57,637 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-07:16:57,645 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-07:16:58,111 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.resample_functional_roi_0".
201113-07:16:58,113 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-07:16:58,119 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-07:17:04,626 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats".
201113-07:17:04,628 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-07:17:04,635 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-07:17:04,883 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv".
201113-07:17:04,885 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-07:17:04,935 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-07:17:04,977 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-07:17:05,510 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-07:17:05,514 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.ndmg_graphs_0".
201113-07:17:05,514 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-07:17:05,523 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:17:05,756 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph".
201113-07:17:05,758 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-07:17:05,764 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-07:17:06,1 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz".
201113-07:17:06,3 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-07:17:06,11 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:17:06,247 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries".
201113-07:17:06,250 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard".
201113-07:17:06,259 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:17:06,495 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard".
201113-07:17:06,496 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.write_composite_xfm_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/write_composite_xfm_functional_to_standard__t1_0".
201113-07:17:06,506 nipype.workflow INFO:
[Node] Running "write_composite_xfm_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output [ func_to_standard_xfm.nii.gz, 1 ] --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-07:28:27,610 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.write_composite_xfm_functional_to_standard__t1_0".
201113-07:28:27,613 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard_xfm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard_xfm".
201113-07:28:27,623 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:28:27,855 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard_xfm".
201113-07:28:27,857 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-07:28:27,865 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-07:28:30,771 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-07:28:30,773 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/apply_ants_warp_motion_correct_to_standard__t1_0".
201113-07:28:30,904 nipype.workflow INFO:
[Node] Running "apply_ants_warp_motion_correct_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_motion_correct_mcflirt/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-07:40:23,98 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0".
201113-07:40:23,102 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_correct_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_motion_correct_to_standard".
201113-07:40:23,112 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:40:23,372 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_correct_to_standard".
201113-07:40:23,374 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-07:40:23,396 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-07:40:30,545 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-07:40:30,547 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard__t1_0".
201113-07:40:30,556 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-07:40:37,631 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0".
201113-07:40:37,633 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.resample_u" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_ms_run-1/resample_u".
201113-07:40:37,638 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-07:40:38,333 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.resample_u".
201113-07:40:38,334 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_ms_run-1/montage_s".
201113-07:40:38,341 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_ms_run-1/montage_s/mapflow/_montage_s0".
201113-07:40:38,345 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-07:40:40,178 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-07:40:40,182 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_s".
201113-07:40:40,183 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_qc___mean_func_with_mni_edge_s".
201113-07:40:40,190 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:40:40,402 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_mni_edge_s/_scan_ms_run-1/_montage_s0/MNI_edge_on_mean_func_mni_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_mni_edge_s/_scan_ms_run-1/_montage_s0/MNI_edge_on_mean_func_mni_s.png
201113-07:40:40,429 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_s".
201113-07:40:40,431 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_ms_run-1/montage_a".
201113-07:40:40,438 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_ms_run-1/montage_a/mapflow/_montage_a0".
201113-07:40:40,443 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-07:40:42,591 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-07:40:42,595 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_a".
201113-07:40:42,596 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_qc___mean_func_with_mni_edge_a".
201113-07:40:42,604 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:40:42,817 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_mni_edge_a/_scan_ms_run-1/_montage_a0/MNI_edge_on_mean_func_mni_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_mni_edge_a/_scan_ms_run-1/_montage_a0/MNI_edge_on_mean_func_mni_a.png
201113-07:40:42,840 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_a".
201113-07:40:42,841 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_ms_run-1/csf_resample".
201113-07:40:42,849 nipype.workflow INFO:
[Node] Running "csf_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_csf_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_ms_run-1/csf_resample/avg152T1_csf_bin.nii.gz
201113-07:40:43,117 nipype.interface INFO:
stderr 2020-11-13T07:40:43.117213:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-07:40:43,118 nipype.interface INFO:
stderr 2020-11-13T07:40:43.117982: Warnings of this type will be muted for this session.
201113-07:40:43,118 nipype.interface INFO:
stderr 2020-11-13T07:40:43.117982: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-07:40:43,420 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_resample".
201113-07:40:43,448 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_ms_run-1/csf_mask".
201113-07:40:43,455 nipype.workflow INFO:
[Node] Running "csf_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_ms_run-1/csf_resample/avg152T1_csf_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_csf_bin_resample_calc.nii
201113-07:40:43,719 nipype.interface INFO:
stderr 2020-11-13T07:40:43.719007:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-07:40:43,719 nipype.interface INFO:
stderr 2020-11-13T07:40:43.719537:++ Authored by: A cast of thousands
201113-07:40:43,818 nipype.interface INFO:
stderr 2020-11-13T07:40:43.818366:++ Output dataset ./avg152T1_csf_bin_resample_calc.nii
201113-07:40:44,13 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_mask".
201113-07:40:44,14 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_ms_run-1/wm_resample".
201113-07:40:44,21 nipype.workflow INFO:
[Node] Running "wm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_white_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_ms_run-1/wm_resample/avg152T1_white_bin.nii.gz
201113-07:40:44,296 nipype.interface INFO:
stderr 2020-11-13T07:40:44.295998:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-07:40:44,296 nipype.interface INFO:
stderr 2020-11-13T07:40:44.296747: Warnings of this type will be muted for this session.
201113-07:40:44,297 nipype.interface INFO:
stderr 2020-11-13T07:40:44.296747: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-07:40:44,552 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_resample".
201113-07:40:44,554 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_ms_run-1/wm_mask".
201113-07:40:44,561 nipype.workflow INFO:
[Node] Running "wm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_ms_run-1/wm_resample/avg152T1_white_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_white_bin_resample_calc.nii
201113-07:40:44,823 nipype.interface INFO:
stderr 2020-11-13T07:40:44.823505:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-07:40:44,824 nipype.interface INFO:
stderr 2020-11-13T07:40:44.824047:++ Authored by: A cast of thousands
201113-07:40:44,961 nipype.interface INFO:
stderr 2020-11-13T07:40:44.961090:++ Output dataset ./avg152T1_white_bin_resample_calc.nii
201113-07:40:45,156 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_mask".
201113-07:40:45,158 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_ms_run-1/gm_resample".
201113-07:40:45,166 nipype.workflow INFO:
[Node] Running "gm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_gray_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_ms_run-1/gm_resample/avg152T1_gray_bin.nii.gz
201113-07:40:45,430 nipype.interface INFO:
stderr 2020-11-13T07:40:45.430831:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-07:40:45,431 nipype.interface INFO:
stderr 2020-11-13T07:40:45.431362: Warnings of this type will be muted for this session.
201113-07:40:45,431 nipype.interface INFO:
stderr 2020-11-13T07:40:45.431362: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-07:40:45,689 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_resample".
201113-07:40:45,691 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_ms_run-1/gm_mask".
201113-07:40:45,696 nipype.workflow INFO:
[Node] Running "gm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_ms_run-1/gm_resample/avg152T1_gray_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_gray_bin_resample_calc.nii
201113-07:40:45,957 nipype.interface INFO:
stderr 2020-11-13T07:40:45.956910:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-07:40:45,957 nipype.interface INFO:
stderr 2020-11-13T07:40:45.957473:++ Authored by: A cast of thousands
201113-07:40:46,78 nipype.interface INFO:
stderr 2020-11-13T07:40:46.078349:++ Output dataset ./avg152T1_gray_bin_resample_calc.nii
201113-07:40:46,263 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_mask".
201113-07:40:46,265 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.carpet_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_plot".
201113-07:40:46,272 nipype.workflow INFO:
[Node] Running "carpet_plot" ("CPAC.utils.interfaces.function.Function")
201113-07:40:52,647 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.carpet_plot".
201113-07:40:52,649 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___carpet" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_qc___carpet".
201113-07:40:52,657 nipype.workflow INFO:
[Node] Running "sinker_0_qc___carpet" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:40:52,871 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___carpet/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/carpet/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png
201113-07:40:52,891 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___carpet".
201113-07:40:52,893 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_mean_functional_to_standard".
201113-07:40:52,900 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:40:53,133 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_to_standard".
201113-07:40:53,135 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-07:40:53,168 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-07:40:55,736 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-07:40:55,738 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-07:40:55,747 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-181_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-07:40:58,297 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-07:40:58,299 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/sinker_0_functional_brain_mask_to_standard".
201113-07:40:58,307 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:40:58,539 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask_to_standard".
201113-07:40:58,541 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_ms_run-1/inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-07:40:58,546 nipype.workflow INFO:
[Node] Running "inverse_transform_flags_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-07:40:58,776 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-07:40:58,778 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-07:40:58,807 nipype.workflow INFO:
[Node] Running "collect_transforms_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.base.Merge")
201113-07:40:59,42 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-07:40:59,44 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-07:40:59,48 nipype.workflow INFO:
[Node] Running "check_transformsfunctional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-07:40:59,282 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-07:40:59,285 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-07:40:59,318 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_freq_filtered_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/bandpassed_demeaned_filtered.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output bandpassed_demeaned_filtered_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-07:41:02,310 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-07:41:02,313 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0".
201113-07:41:02,346 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-07:49:12,36 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_to_standard__t1_0".
201113-07:49:12,39 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-07:49:12,47 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-07:49:12,534 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.resample_functional_roi_0".
201113-07:49:12,536 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-07:49:12,544 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-07:49:17,211 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats".
201113-07:49:17,213 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-07:49:17,219 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-07:49:17,469 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv".
201113-07:49:17,475 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-07:49:17,513 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-07:49:17,545 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-07:49:18,87 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-07:49:18,91 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.ndmg_graphs_0".
201113-07:49:18,91 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-07:49:18,117 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:49:18,354 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph".
201113-07:49:18,356 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-07:49:18,361 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-07:49:18,597 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz".
201113-07:49:18,599 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-07:49:18,607 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:49:18,843 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries".
201113-07:49:18,845 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-07:49:18,851 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-07:49:19,312 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.resample_functional_roi_0".
201113-07:49:19,314 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-07:49:19,321 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-07:49:23,924 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats".
201113-07:49:23,926 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-07:49:23,932 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-07:49:24,177 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv".
201113-07:49:24,179 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-07:49:24,212 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-07:49:24,241 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-07:49:24,768 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-07:49:24,773 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.ndmg_graphs_0".
201113-07:49:24,773 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-07:49:24,781 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:49:25,16 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph".
201113-07:49:25,17 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-07:49:25,23 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-07:49:25,258 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz".
201113-07:49:25,261 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-07:49:25,270 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:49:25,503 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries".
201113-07:49:25,504 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard".
201113-07:49:25,512 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:49:25,746 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard".
201113-07:49:25,748 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.write_composite_xfm_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/write_composite_xfm_functional_to_standard__t1_0".
201113-07:49:25,757 nipype.workflow INFO:
[Node] Running "write_composite_xfm_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output [ func_to_standard_xfm.nii.gz, 1 ] --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-07:57:21,442 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.write_composite_xfm_functional_to_standard__t1_0".
201113-07:57:21,445 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard_xfm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard_xfm".
201113-07:57:21,454 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:57:21,692 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard_xfm".
201113-07:57:21,694 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-07:57:21,702 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-07:57:24,652 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-07:57:24,654 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/apply_ants_warp_motion_correct_to_standard__t1_0".
201113-07:57:24,768 nipype.workflow INFO:
[Node] Running "apply_ants_warp_motion_correct_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_motion_correct_mcflirt/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-08:05:39,949 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0".
201113-08:05:39,952 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_correct_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_motion_correct_to_standard".
201113-08:05:39,962 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:05:40,195 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_correct_to_standard".
201113-08:05:40,197 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-08:05:40,231 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-08:05:47,314 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-08:05:47,316 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard__t1_0".
201113-08:05:47,325 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-08:05:54,439 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0".
201113-08:05:54,441 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.resample_u" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_matching_run-3/resample_u".
201113-08:05:54,447 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-08:05:55,152 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.resample_u".
201113-08:05:55,154 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_matching_run-3/montage_s".
201113-08:05:55,161 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_matching_run-3/montage_s/mapflow/_montage_s0".
201113-08:05:55,166 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-08:05:57,24 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-08:05:57,27 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_s".
201113-08:05:57,28 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_qc___mean_func_with_mni_edge_s".
201113-08:05:57,36 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:05:57,251 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_mni_edge_s/_scan_matching_run-3/_montage_s0/MNI_edge_on_mean_func_mni_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_mni_edge_s/_scan_matching_run-3/_montage_s0/MNI_edge_on_mean_func_mni_s.png
201113-08:05:57,278 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_s".
201113-08:05:57,280 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_matching_run-3/montage_a".
201113-08:05:57,287 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_matching_run-3/montage_a/mapflow/_montage_a0".
201113-08:05:57,317 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-08:05:59,438 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-08:05:59,442 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_a".
201113-08:05:59,443 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_qc___mean_func_with_mni_edge_a".
201113-08:05:59,451 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:05:59,664 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_mni_edge_a/_scan_matching_run-3/_montage_a0/MNI_edge_on_mean_func_mni_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_mni_edge_a/_scan_matching_run-3/_montage_a0/MNI_edge_on_mean_func_mni_a.png
201113-08:05:59,687 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_a".
201113-08:05:59,690 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-3/csf_resample".
201113-08:05:59,698 nipype.workflow INFO:
[Node] Running "csf_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_csf_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-3/csf_resample/avg152T1_csf_bin.nii.gz
201113-08:05:59,980 nipype.interface INFO:
stderr 2020-11-13T08:05:59.980744:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-08:05:59,981 nipype.interface INFO:
stderr 2020-11-13T08:05:59.981326: Warnings of this type will be muted for this session.
201113-08:05:59,981 nipype.interface INFO:
stderr 2020-11-13T08:05:59.981326: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-08:06:00,299 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_resample".
201113-08:06:00,302 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-3/csf_mask".
201113-08:06:00,308 nipype.workflow INFO:
[Node] Running "csf_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-3/csf_resample/avg152T1_csf_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_csf_bin_resample_calc.nii
201113-08:06:00,568 nipype.interface INFO:
stderr 2020-11-13T08:06:00.568417:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:06:00,568 nipype.interface INFO:
stderr 2020-11-13T08:06:00.568919:++ Authored by: A cast of thousands
201113-08:06:00,666 nipype.interface INFO:
stderr 2020-11-13T08:06:00.666351:++ Output dataset ./avg152T1_csf_bin_resample_calc.nii
201113-08:06:00,862 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_mask".
201113-08:06:00,864 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-3/wm_resample".
201113-08:06:00,872 nipype.workflow INFO:
[Node] Running "wm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_white_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-3/wm_resample/avg152T1_white_bin.nii.gz
201113-08:06:01,147 nipype.interface INFO:
stderr 2020-11-13T08:06:01.147671:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-08:06:01,148 nipype.interface INFO:
stderr 2020-11-13T08:06:01.148210: Warnings of this type will be muted for this session.
201113-08:06:01,148 nipype.interface INFO:
stderr 2020-11-13T08:06:01.148210: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-08:06:01,393 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_resample".
201113-08:06:01,395 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-3/wm_mask".
201113-08:06:01,400 nipype.workflow INFO:
[Node] Running "wm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-3/wm_resample/avg152T1_white_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_white_bin_resample_calc.nii
201113-08:06:01,662 nipype.interface INFO:
stderr 2020-11-13T08:06:01.662795:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:06:01,663 nipype.interface INFO:
stderr 2020-11-13T08:06:01.663377:++ Authored by: A cast of thousands
201113-08:06:01,795 nipype.interface INFO:
stderr 2020-11-13T08:06:01.795441:++ Output dataset ./avg152T1_white_bin_resample_calc.nii
201113-08:06:01,993 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_mask".
201113-08:06:01,994 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-3/gm_resample".
201113-08:06:02,2 nipype.workflow INFO:
[Node] Running "gm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_gray_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-3/gm_resample/avg152T1_gray_bin.nii.gz
201113-08:06:02,263 nipype.interface INFO:
stderr 2020-11-13T08:06:02.263569:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-08:06:02,264 nipype.interface INFO:
stderr 2020-11-13T08:06:02.264085: Warnings of this type will be muted for this session.
201113-08:06:02,264 nipype.interface INFO:
stderr 2020-11-13T08:06:02.264085: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-08:06:02,496 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_resample".
201113-08:06:02,498 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-3/gm_mask".
201113-08:06:02,504 nipype.workflow INFO:
[Node] Running "gm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-3/gm_resample/avg152T1_gray_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_gray_bin_resample_calc.nii
201113-08:06:02,772 nipype.interface INFO:
stderr 2020-11-13T08:06:02.771926:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:06:02,772 nipype.interface INFO:
stderr 2020-11-13T08:06:02.772676:++ Authored by: A cast of thousands
201113-08:06:02,869 nipype.interface INFO:
stderr 2020-11-13T08:06:02.869715:++ Output dataset ./avg152T1_gray_bin_resample_calc.nii
201113-08:06:03,69 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_mask".
201113-08:06:03,71 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.carpet_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_plot".
201113-08:06:03,79 nipype.workflow INFO:
[Node] Running "carpet_plot" ("CPAC.utils.interfaces.function.Function")
201113-08:06:07,753 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.carpet_plot".
201113-08:06:07,755 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___carpet" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_qc___carpet".
201113-08:06:07,762 nipype.workflow INFO:
[Node] Running "sinker_0_qc___carpet" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:06:07,974 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___carpet/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/carpet/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png
201113-08:06:07,996 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___carpet".
201113-08:06:07,998 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_mean_functional_to_standard".
201113-08:06:08,6 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:06:08,240 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_to_standard".
201113-08:06:08,242 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-08:06:08,276 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-08:06:10,842 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-08:06:10,844 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-08:06:10,852 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-181_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-08:06:13,402 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-08:06:13,404 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/sinker_0_functional_brain_mask_to_standard".
201113-08:06:13,410 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:06:13,650 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask_to_standard".
201113-08:06:13,652 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-3/inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-08:06:13,658 nipype.workflow INFO:
[Node] Running "inverse_transform_flags_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-08:06:13,892 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-08:06:13,893 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-08:06:13,922 nipype.workflow INFO:
[Node] Running "collect_transforms_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.base.Merge")
201113-08:06:14,154 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-08:06:14,156 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-08:06:14,162 nipype.workflow INFO:
[Node] Running "check_transformsfunctional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-08:06:14,395 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-08:06:14,397 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-08:06:14,428 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_freq_filtered_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/bandpassed_demeaned_filtered.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output bandpassed_demeaned_filtered_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-08:06:17,369 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-08:06:17,371 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0".
201113-08:06:17,395 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-08:14:25,793 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_to_standard__t1_0".
201113-08:14:25,797 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-08:14:25,805 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-08:14:26,276 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.resample_functional_roi_0".
201113-08:14:26,278 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-08:14:26,306 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-08:14:30,953 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats".
201113-08:14:30,955 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-08:14:30,961 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-08:14:31,209 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv".
201113-08:14:31,211 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-08:14:31,250 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-08:14:31,281 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-08:14:31,817 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-08:14:31,822 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.ndmg_graphs_0".
201113-08:14:31,822 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-08:14:31,831 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:14:32,65 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph".
201113-08:14:32,66 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-08:14:32,71 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-08:14:32,310 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz".
201113-08:14:32,312 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-08:14:32,320 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:14:32,554 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries".
201113-08:14:32,556 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-08:14:32,563 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-08:14:33,41 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.resample_functional_roi_0".
201113-08:14:33,43 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-08:14:33,50 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-08:14:37,716 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats".
201113-08:14:37,719 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-08:14:37,725 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-08:14:37,977 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv".
201113-08:14:37,980 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-08:14:38,15 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-08:14:38,48 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-08:14:38,578 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-08:14:38,582 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.ndmg_graphs_0".
201113-08:14:38,583 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-08:14:38,590 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:14:38,824 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph".
201113-08:14:38,826 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-08:14:38,837 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-08:14:39,74 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz".
201113-08:14:39,75 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-08:14:39,83 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:14:39,314 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries".
201113-08:14:39,316 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard".
201113-08:14:39,324 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:14:39,554 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard".
201113-08:14:39,556 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.write_composite_xfm_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/write_composite_xfm_functional_to_standard__t1_0".
201113-08:14:39,565 nipype.workflow INFO:
[Node] Running "write_composite_xfm_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output [ func_to_standard_xfm.nii.gz, 1 ] --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-08:22:33,870 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.write_composite_xfm_functional_to_standard__t1_0".
201113-08:22:33,873 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard_xfm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard_xfm".
201113-08:22:33,883 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:22:34,117 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard_xfm".
201113-08:22:34,120 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-08:22:34,148 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-08:22:37,104 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-08:22:37,106 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/apply_ants_warp_motion_correct_to_standard__t1_0".
201113-08:22:37,209 nipype.workflow INFO:
[Node] Running "apply_ants_warp_motion_correct_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_motion_correct_mcflirt/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-08:30:51,504 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0".
201113-08:30:51,507 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_correct_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_motion_correct_to_standard".
201113-08:30:51,551 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:30:51,785 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_correct_to_standard".
201113-08:30:51,786 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-08:30:51,817 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-08:30:58,950 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-08:30:58,952 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard__t1_0".
201113-08:30:58,961 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-08:31:06,18 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0".
201113-08:31:06,21 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.resample_u" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_matching_run-2/resample_u".
201113-08:31:06,31 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-08:31:06,740 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.resample_u".
201113-08:31:06,741 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_matching_run-2/montage_s".
201113-08:31:06,752 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_matching_run-2/montage_s/mapflow/_montage_s0".
201113-08:31:06,757 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-08:31:08,612 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-08:31:08,616 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_s".
201113-08:31:08,616 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_qc___mean_func_with_mni_edge_s".
201113-08:31:08,625 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:31:08,840 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_mni_edge_s/_scan_matching_run-2/_montage_s0/MNI_edge_on_mean_func_mni_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_mni_edge_s/_scan_matching_run-2/_montage_s0/MNI_edge_on_mean_func_mni_s.png
201113-08:31:08,863 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_s".
201113-08:31:08,878 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_matching_run-2/montage_a".
201113-08:31:08,884 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_matching_run-2/montage_a/mapflow/_montage_a0".
201113-08:31:08,889 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-08:31:11,26 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-08:31:11,32 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_a".
201113-08:31:11,32 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_qc___mean_func_with_mni_edge_a".
201113-08:31:11,41 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:31:11,252 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_mni_edge_a/_scan_matching_run-2/_montage_a0/MNI_edge_on_mean_func_mni_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_mni_edge_a/_scan_matching_run-2/_montage_a0/MNI_edge_on_mean_func_mni_a.png
201113-08:31:11,274 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_a".
201113-08:31:11,277 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-2/csf_resample".
201113-08:31:11,285 nipype.workflow INFO:
[Node] Running "csf_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_csf_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-2/csf_resample/avg152T1_csf_bin.nii.gz
201113-08:31:11,556 nipype.interface INFO:
stderr 2020-11-13T08:31:11.556047:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-08:31:11,557 nipype.interface INFO:
stderr 2020-11-13T08:31:11.557326: Warnings of this type will be muted for this session.
201113-08:31:11,557 nipype.interface INFO:
stderr 2020-11-13T08:31:11.557326: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-08:31:11,844 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_resample".
201113-08:31:11,846 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-2/csf_mask".
201113-08:31:11,852 nipype.workflow INFO:
[Node] Running "csf_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-2/csf_resample/avg152T1_csf_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_csf_bin_resample_calc.nii
201113-08:31:12,106 nipype.interface INFO:
stderr 2020-11-13T08:31:12.106748:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:31:12,107 nipype.interface INFO:
stderr 2020-11-13T08:31:12.107191:++ Authored by: A cast of thousands
201113-08:31:12,248 nipype.interface INFO:
stderr 2020-11-13T08:31:12.248764:++ Output dataset ./avg152T1_csf_bin_resample_calc.nii
201113-08:31:12,423 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_mask".
201113-08:31:12,425 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-2/wm_resample".
201113-08:31:12,432 nipype.workflow INFO:
[Node] Running "wm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_white_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-2/wm_resample/avg152T1_white_bin.nii.gz
201113-08:31:12,683 nipype.interface INFO:
stderr 2020-11-13T08:31:12.683878:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-08:31:12,684 nipype.interface INFO:
stderr 2020-11-13T08:31:12.684334: Warnings of this type will be muted for this session.
201113-08:31:12,684 nipype.interface INFO:
stderr 2020-11-13T08:31:12.684334: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-08:31:12,933 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_resample".
201113-08:31:12,935 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-2/wm_mask".
201113-08:31:12,940 nipype.workflow INFO:
[Node] Running "wm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-2/wm_resample/avg152T1_white_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_white_bin_resample_calc.nii
201113-08:31:13,199 nipype.interface INFO:
stderr 2020-11-13T08:31:13.199576:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:31:13,200 nipype.interface INFO:
stderr 2020-11-13T08:31:13.200121:++ Authored by: A cast of thousands
201113-08:31:13,332 nipype.interface INFO:
stderr 2020-11-13T08:31:13.332692:++ Output dataset ./avg152T1_white_bin_resample_calc.nii
201113-08:31:13,539 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_mask".
201113-08:31:13,541 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-2/gm_resample".
201113-08:31:13,549 nipype.workflow INFO:
[Node] Running "gm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_gray_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-2/gm_resample/avg152T1_gray_bin.nii.gz
201113-08:31:13,813 nipype.interface INFO:
stderr 2020-11-13T08:31:13.813615:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-08:31:13,814 nipype.interface INFO:
stderr 2020-11-13T08:31:13.814160: Warnings of this type will be muted for this session.
201113-08:31:13,814 nipype.interface INFO:
stderr 2020-11-13T08:31:13.814160: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-08:31:14,84 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_resample".
201113-08:31:14,85 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-2/gm_mask".
201113-08:31:14,92 nipype.workflow INFO:
[Node] Running "gm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-2/gm_resample/avg152T1_gray_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_gray_bin_resample_calc.nii
201113-08:31:14,353 nipype.interface INFO:
stderr 2020-11-13T08:31:14.353208:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:31:14,353 nipype.interface INFO:
stderr 2020-11-13T08:31:14.353718:++ Authored by: A cast of thousands
201113-08:31:14,485 nipype.interface INFO:
stderr 2020-11-13T08:31:14.485285:++ Output dataset ./avg152T1_gray_bin_resample_calc.nii
201113-08:31:14,679 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_mask".
201113-08:31:14,681 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.carpet_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_plot".
201113-08:31:14,690 nipype.workflow INFO:
[Node] Running "carpet_plot" ("CPAC.utils.interfaces.function.Function")
201113-08:31:19,214 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.carpet_plot".
201113-08:31:19,216 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___carpet" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_qc___carpet".
201113-08:31:19,223 nipype.workflow INFO:
[Node] Running "sinker_0_qc___carpet" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:31:19,438 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___carpet/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/carpet/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png
201113-08:31:19,462 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___carpet".
201113-08:31:19,464 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_mean_functional_to_standard".
201113-08:31:19,472 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:31:19,706 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_to_standard".
201113-08:31:19,708 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-08:31:19,736 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-08:31:22,296 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-08:31:22,298 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-08:31:22,306 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-181_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-08:31:24,861 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-08:31:24,863 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/sinker_0_functional_brain_mask_to_standard".
201113-08:31:24,871 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:31:25,105 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask_to_standard".
201113-08:31:25,106 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-2/inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-08:31:25,112 nipype.workflow INFO:
[Node] Running "inverse_transform_flags_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-08:31:25,345 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-08:31:25,348 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-08:31:25,380 nipype.workflow INFO:
[Node] Running "collect_transforms_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.base.Merge")
201113-08:31:25,616 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-08:31:25,618 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-08:31:25,623 nipype.workflow INFO:
[Node] Running "check_transformsfunctional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-08:31:25,857 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-08:31:25,859 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-08:31:25,896 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_freq_filtered_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/frequency_filtering_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/bandpassed_demeaned_filtered.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output bandpassed_demeaned_filtered_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-08:31:28,872 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-08:31:28,875 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0".
201113-08:31:28,893 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-08:39:38,201 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_to_standard__t1_0".
201113-08:39:38,203 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-08:39:38,232 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-08:39:38,748 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.resample_functional_roi_0".
201113-08:39:38,751 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-08:39:38,760 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-08:39:43,403 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats".
201113-08:39:43,405 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-08:39:43,410 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-08:39:43,659 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv".
201113-08:39:43,661 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-08:39:43,705 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-08:39:43,740 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-08:39:44,281 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-08:39:44,286 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.ndmg_graphs_0".
201113-08:39:44,286 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-08:39:44,294 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:39:44,531 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph".
201113-08:39:44,532 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-08:39:44,540 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-08:39:44,773 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz".
201113-08:39:44,774 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-08:39:44,782 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:39:45,11 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries".
201113-08:39:45,13 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-08:39:45,18 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-08:39:45,467 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.resample_functional_roi_0".
201113-08:39:45,469 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-08:39:45,475 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-08:39:50,126 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.3dROIstats".
201113-08:39:50,129 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-08:39:50,134 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-08:39:50,379 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.clean_roi_csv".
201113-08:39:50,382 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-08:39:50,420 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-08:39:50,451 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-08:39:50,980 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-08:39:50,985 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.ndmg_graphs_0".
201113-08:39:50,986 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-08:39:50,993 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:39:51,224 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_ndmg_graph".
201113-08:39:51,227 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-181_ses-1/roi_timeseries_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-08:39:51,232 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-08:39:51,466 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.roi_timeseries_0.write_roi_npz".
201113-08:39:51,468 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-08:39:51,475 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:39:51,712 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_roi_timeseries".
201113-08:39:51,714 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard".
201113-08:39:51,723 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:39:51,955 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard".
201113-08:39:51,956 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.write_composite_xfm_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/write_composite_xfm_functional_to_standard__t1_0".
201113-08:39:51,965 nipype.workflow INFO:
[Node] Running "write_composite_xfm_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output [ func_to_standard_xfm.nii.gz, 1 ] --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-08:47:46,386 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.write_composite_xfm_functional_to_standard__t1_0".
201113-08:47:46,390 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard_xfm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard_xfm".
201113-08:47:46,399 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:47:46,632 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_to_standard_xfm".
201113-08:47:46,634 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-08:47:46,642 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-08:47:49,560 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-08:47:49,562 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/apply_ants_warp_motion_correct_to_standard__t1_0".
201113-08:47:49,671 nipype.workflow INFO:
[Node] Running "apply_ants_warp_motion_correct_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_motion_correct_mcflirt/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-08:56:03,812 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0".
201113-08:56:03,815 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_motion_correct_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_motion_correct_to_standard".
201113-08:56:03,825 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:56:04,58 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_motion_correct_to_standard".
201113-08:56:04,60 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-08:56:04,93 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-08:56:11,162 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-08:56:11,164 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard__t1_0".
201113-08:56:11,172 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-08:56:18,261 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0".
201113-08:56:18,263 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.resample_u" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_matching_run-1/resample_u".
201113-08:56:18,269 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-08:56:18,972 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.resample_u".
201113-08:56:18,973 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_matching_run-1/montage_s".
201113-08:56:18,980 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_matching_run-1/montage_s/mapflow/_montage_s0".
201113-08:56:18,985 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-08:56:20,813 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-08:56:20,816 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_s".
201113-08:56:20,817 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_qc___mean_func_with_mni_edge_s".
201113-08:56:20,824 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:56:21,37 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_mni_edge_s/_scan_matching_run-1/_montage_s0/MNI_edge_on_mean_func_mni_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_mni_edge_s/_scan_matching_run-1/_montage_s0/MNI_edge_on_mean_func_mni_s.png
201113-08:56:21,54 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_s".
201113-08:56:21,55 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_matching_run-1/montage_a".
201113-08:56:21,62 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mfi_0/_scan_matching_run-1/montage_a/mapflow/_montage_a0".
201113-08:56:21,67 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-08:56:23,141 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-08:56:23,145 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mfi_0.montage_a".
201113-08:56:23,146 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_qc___mean_func_with_mni_edge_a".
201113-08:56:23,154 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:56:23,364 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mean_func_with_mni_edge_a/_scan_matching_run-1/_montage_a0/MNI_edge_on_mean_func_mni_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mean_func_with_mni_edge_a/_scan_matching_run-1/_montage_a0/MNI_edge_on_mean_func_mni_a.png
201113-08:56:23,382 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mean_func_with_mni_edge_a".
201113-08:56:23,384 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-1/csf_resample".
201113-08:56:23,391 nipype.workflow INFO:
[Node] Running "csf_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_csf_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-1/csf_resample/avg152T1_csf_bin.nii.gz
201113-08:56:23,652 nipype.interface INFO:
stderr 2020-11-13T08:56:23.652030:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-08:56:23,652 nipype.interface INFO:
stderr 2020-11-13T08:56:23.652492: Warnings of this type will be muted for this session.
201113-08:56:23,652 nipype.interface INFO:
stderr 2020-11-13T08:56:23.652492: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-08:56:23,973 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_resample".
201113-08:56:23,975 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-1/csf_mask".
201113-08:56:23,981 nipype.workflow INFO:
[Node] Running "csf_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-1/csf_resample/avg152T1_csf_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_csf_bin_resample_calc.nii
201113-08:56:24,249 nipype.interface INFO:
stderr 2020-11-13T08:56:24.249438:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:56:24,249 nipype.interface INFO:
stderr 2020-11-13T08:56:24.249939:++ Authored by: A cast of thousands
201113-08:56:24,373 nipype.interface INFO:
stderr 2020-11-13T08:56:24.373782:++ Output dataset ./avg152T1_csf_bin_resample_calc.nii
201113-08:56:24,567 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.csf_mask".
201113-08:56:24,569 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-1/wm_resample".
201113-08:56:24,577 nipype.workflow INFO:
[Node] Running "wm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_white_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-1/wm_resample/avg152T1_white_bin.nii.gz
201113-08:56:24,840 nipype.interface INFO:
stderr 2020-11-13T08:56:24.840476:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-08:56:24,840 nipype.interface INFO:
stderr 2020-11-13T08:56:24.840970: Warnings of this type will be muted for this session.
201113-08:56:24,841 nipype.interface INFO:
stderr 2020-11-13T08:56:24.840970: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-08:56:25,102 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_resample".
201113-08:56:25,104 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-1/wm_mask".
201113-08:56:25,110 nipype.workflow INFO:
[Node] Running "wm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-1/wm_resample/avg152T1_white_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_white_bin_resample_calc.nii
201113-08:56:25,371 nipype.interface INFO:
stderr 2020-11-13T08:56:25.371787:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:56:25,372 nipype.interface INFO:
stderr 2020-11-13T08:56:25.372328:++ Authored by: A cast of thousands
201113-08:56:25,512 nipype.interface INFO:
stderr 2020-11-13T08:56:25.511931:++ Output dataset ./avg152T1_white_bin_resample_calc.nii
201113-08:56:25,706 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.wm_mask".
201113-08:56:25,708 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_resample" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-1/gm_resample".
201113-08:56:25,715 nipype.workflow INFO:
[Node] Running "gm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_gray_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-1/gm_resample/avg152T1_gray_bin.nii.gz
201113-08:56:25,983 nipype.interface INFO:
stderr 2020-11-13T08:56:25.983196:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-08:56:25,983 nipype.interface INFO:
stderr 2020-11-13T08:56:25.983699: Warnings of this type will be muted for this session.
201113-08:56:25,983 nipype.interface INFO:
stderr 2020-11-13T08:56:25.983699: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-08:56:26,244 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_resample".
201113-08:56:26,246 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-1/gm_mask".
201113-08:56:26,251 nipype.workflow INFO:
[Node] Running "gm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-1/gm_resample/avg152T1_gray_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_gray_bin_resample_calc.nii
201113-08:56:26,510 nipype.interface INFO:
stderr 2020-11-13T08:56:26.510373:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:56:26,510 nipype.interface INFO:
stderr 2020-11-13T08:56:26.510830:++ Authored by: A cast of thousands
201113-08:56:26,605 nipype.interface INFO:
stderr 2020-11-13T08:56:26.605676:++ Output dataset ./avg152T1_gray_bin_resample_calc.nii
201113-08:56:26,789 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.gm_mask".
201113-08:56:26,790 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.carpet_seg_0.carpet_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-1/carpet_seg_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_plot".
201113-08:56:26,798 nipype.workflow INFO:
[Node] Running "carpet_plot" ("CPAC.utils.interfaces.function.Function")
201113-08:56:31,405 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.carpet_seg_0.carpet_plot".
201113-08:56:31,407 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___carpet" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_qc___carpet".
201113-08:56:31,415 nipype.workflow INFO:
[Node] Running "sinker_0_qc___carpet" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:56:31,630 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___carpet/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/carpet/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png
201113-08:56:31,651 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___carpet".
201113-08:56:31,653 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_mean_functional_to_standard".
201113-08:56:31,660 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:56:31,894 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_mean_functional_to_standard".
201113-08:56:31,896 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-08:56:31,922 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-08:56:34,497 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-08:56:34,499 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-08:56:34,509 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-181_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-181_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-181_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-08:56:37,64 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-08:56:37,66 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask_to_standard" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/sinker_0_functional_brain_mask_to_standard".
201113-08:56:37,74 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:56:37,309 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_functional_brain_mask_to_standard".
201113-08:56:37,311 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/_scan_matching_run-1/inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-08:56:37,316 nipype.workflow INFO:
[Node] Running "inverse_transform_flags_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-08:56:37,550 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-08:56:37,552 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.seg_preproc_0.GM.GM_collect_linear_transforms" in "/outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/GM/GM_collect_linear_transforms".
201113-08:56:37,562 nipype.workflow INFO:
[Node] Running "GM_collect_linear_transforms" ("nipype.interfaces.utility.base.Merge")
201113-08:56:37,795 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.seg_preproc_0.GM.GM_collect_linear_transforms".
201113-08:56:37,796 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.seg_preproc_0.GM.GM_check_transforms" in "/outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/GM/GM_check_transforms".
201113-08:56:37,801 nipype.workflow INFO:
[Node] Running "GM_check_transforms" ("nipype.interfaces.utility.wrappers.Function")
201113-08:56:38,34 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.seg_preproc_0.GM.GM_check_transforms".
201113-08:56:38,36 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.seg_preproc_0.GM.GM_inverse_transform_flags" in "/outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/GM/GM_inverse_transform_flags".
201113-08:56:38,40 nipype.workflow INFO:
[Node] Running "GM_inverse_transform_flags" ("nipype.interfaces.utility.wrappers.Function")
201113-08:56:38,274 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.seg_preproc_0.GM.GM_inverse_transform_flags".
201113-08:56:38,275 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.seg_preproc_0.GM.GM_prior_mni_to_t1" in "/outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/GM/GM_prior_mni_to_t1".
201113-08:56:38,305 nipype.workflow INFO:
[Node] Running "GM_prior_mni_to_t1" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 0 --input /usr/share/fsl/5.0/data/standard/tissuepriors/2mm/avg152T1_gray_bin.nii.gz --interpolation NearestNeighbor --output avg152T1_gray_bin_trans.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz --transform [ /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat, 1 ]
201113-08:56:39,867 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.seg_preproc_0.GM.GM_prior_mni_to_t1".
201113-08:56:39,869 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.seg_preproc_0.WM.WM_collect_linear_transforms" in "/outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/WM/WM_collect_linear_transforms".
201113-08:56:39,876 nipype.workflow INFO:
[Node] Running "WM_collect_linear_transforms" ("nipype.interfaces.utility.base.Merge")
201113-08:56:40,110 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.seg_preproc_0.WM.WM_collect_linear_transforms".
201113-08:56:40,111 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.seg_preproc_0.WM.WM_check_transforms" in "/outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/WM/WM_check_transforms".
201113-08:56:40,116 nipype.workflow INFO:
[Node] Running "WM_check_transforms" ("nipype.interfaces.utility.wrappers.Function")
201113-08:56:40,350 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.seg_preproc_0.WM.WM_check_transforms".
201113-08:56:40,352 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.seg_preproc_0.WM.WM_inverse_transform_flags" in "/outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/WM/WM_inverse_transform_flags".
201113-08:56:40,358 nipype.workflow INFO:
[Node] Running "WM_inverse_transform_flags" ("nipype.interfaces.utility.wrappers.Function")
201113-08:56:40,593 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.seg_preproc_0.WM.WM_inverse_transform_flags".
201113-08:56:40,594 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.seg_preproc_0.WM.WM_prior_mni_to_t1" in "/outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/WM/WM_prior_mni_to_t1".
201113-08:56:40,602 nipype.workflow INFO:
[Node] Running "WM_prior_mni_to_t1" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 0 --input /usr/share/fsl/5.0/data/standard/tissuepriors/2mm/avg152T1_white_bin.nii.gz --interpolation NearestNeighbor --output avg152T1_white_bin_trans.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz --transform [ /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat, 1 ]
201113-08:56:42,109 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.seg_preproc_0.WM.WM_prior_mni_to_t1".
201113-08:56:42,111 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.seg_preproc_0.CSF.CSF_collect_linear_transforms" in "/outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/CSF/CSF_collect_linear_transforms".
201113-08:56:42,119 nipype.workflow INFO:
[Node] Running "CSF_collect_linear_transforms" ("nipype.interfaces.utility.base.Merge")
201113-08:56:42,352 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.seg_preproc_0.CSF.CSF_collect_linear_transforms".
201113-08:56:42,353 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.seg_preproc_0.CSF.CSF_check_transforms" in "/outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/CSF/CSF_check_transforms".
201113-08:56:42,358 nipype.workflow INFO:
[Node] Running "CSF_check_transforms" ("nipype.interfaces.utility.wrappers.Function")
201113-08:56:42,593 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.seg_preproc_0.CSF.CSF_check_transforms".
201113-08:56:42,595 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.seg_preproc_0.CSF.CSF_inverse_transform_flags" in "/outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/CSF/CSF_inverse_transform_flags".
201113-08:56:42,599 nipype.workflow INFO:
[Node] Running "CSF_inverse_transform_flags" ("nipype.interfaces.utility.wrappers.Function")
201113-08:56:42,832 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.seg_preproc_0.CSF.CSF_inverse_transform_flags".
201113-08:56:42,834 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.seg_preproc_0.CSF.CSF_prior_mni_to_t1" in "/outputs/tmp/resting_preproc_sub-181_ses-1/seg_preproc_0/CSF/CSF_prior_mni_to_t1".
201113-08:56:42,842 nipype.workflow INFO:
[Node] Running "CSF_prior_mni_to_t1" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 0 --input /usr/share/fsl/5.0/data/standard/tissuepriors/2mm/avg152T1_csf_bin.nii.gz --interpolation NearestNeighbor --output avg152T1_csf_bin_trans.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-181_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-181_ses-1_T1w_resample_corrected_masked_xform.nii.gz --transform [ /outputs/tmp/resting_preproc_sub-181_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat, 1 ]
201113-08:56:44,305 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.seg_preproc_0.CSF.CSF_prior_mni_to_t1".
201113-08:56:44,307 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_ants_initial_xfm" in "/outputs/tmp/resting_preproc_sub-181_ses-1/sinker_0_ants_initial_xfm".
201113-08:56:44,315 nipype.workflow INFO:
[Node] Running "sinker_0_ants_initial_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:56:44,550 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_ants_initial_xfm".
201113-08:56:44,552 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.anat_template_edge_0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/anat_template_edge_0".
201113-08:56:44,572 nipype.workflow INFO:
[Node] Running "anat_template_edge_0" ("CPAC.utils.interfaces.function.Function")
201113-08:56:46,799 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.anat_template_edge_0".
201113-08:56:46,801 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mni_anat_0.resample_o" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mni_anat_0/resample_o".
201113-08:56:46,807 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-08:56:47,366 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mni_anat_0.resample_o".
201113-08:56:47,368 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mni_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mni_anat_0/montage_s".
201113-08:56:47,402 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mni_anat_0/montage_s/mapflow/_montage_s0".
201113-08:56:47,406 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-08:56:49,446 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-08:56:49,450 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mni_anat_0.montage_s".
201113-08:56:49,450 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mni_normalized_anatomical_s" in "/outputs/tmp/resting_preproc_sub-181_ses-1/sinker_0_qc___mni_normalized_anatomical_s".
201113-08:56:49,458 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mni_normalized_anatomical_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:56:49,671 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mni_normalized_anatomical_s/_montage_s0/mni_anat_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mni_normalized_anatomical_s/_montage_s0/mni_anat_s.png
201113-08:56:49,693 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mni_normalized_anatomical_s".
201113-08:56:49,694 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.montage_mni_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mni_anat_0/montage_a".
201113-08:56:49,701 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-181_ses-1/montage_mni_anat_0/montage_a/mapflow/_montage_a0".
201113-08:56:49,705 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-08:56:51,981 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-08:56:51,986 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.montage_mni_anat_0.montage_a".
201113-08:56:51,986 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.sinker_0_qc___mni_normalized_anatomical_a" in "/outputs/tmp/resting_preproc_sub-181_ses-1/sinker_0_qc___mni_normalized_anatomical_a".
201113-08:56:51,995 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mni_normalized_anatomical_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:56:52,207 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc___mni_normalized_anatomical_a/_montage_a0/mni_anat_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-1/qc/mni_normalized_anatomical_a/_montage_a0/mni_anat_a.png
201113-08:56:52,230 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.sinker_0_qc___mni_normalized_anatomical_a".
201113-08:56:52,231 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.check_for_s3_acpc_template_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-1/check_for_s3_acpc_template_brain".
201113-08:56:52,235 nipype.workflow INFO:
[Node] Running "check_for_s3_acpc_template_brain" ("CPAC.utils.interfaces.function.Function")
201113-08:56:52,466 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.check_for_s3_acpc_template_brain".
201113-08:56:52,467 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-1.check_for_s3_acpc_template_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-1/check_for_s3_acpc_template_skull".
201113-08:56:52,471 nipype.workflow INFO:
[Node] Running "check_for_s3_acpc_template_skull" ("CPAC.utils.interfaces.function.Function")
201113-08:56:53,200 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-1.check_for_s3_acpc_template_skull".
201113-08:57:23,132 nipype.workflow INFO:
End of subject workflow resting_preproc_sub-181_ses-1
CPAC run complete:
Pipeline configuration: cpac_fmriprep-options
Subject workflow: resting_preproc_sub-181_ses-1
Elapsed run time (minutes): 659.8806654334069
Timing information saved in /outputs/log/cpac_individual_timing_cpac_fmriprep-options.csv
System time of start: 2020-11-12 21:57:36
System time of completion: 2020-11-13 08:57:23
201113-08:57:23,149 nipype.workflow INFO:
C-PAC version: 1.7.2
Setting maximum number of cores per participant to 1
Setting number of participants at once to 1
Setting OMP_NUM_THREADS to 1
Setting MKL_NUM_THREADS to 1
Setting ANTS/ITK thread usage to 1
Maximum potential number of cores that might be used during this run: 1
201113-08:57:25,632 nipype.workflow INFO:
Pipeline building completed.
201113-08:57:25,632 nipype.workflow INFO:
Strategy forks:
- cpac_fmriprep-options
201113-08:57:28,570 nipype.workflow INFO:
Workflow resting_preproc_sub-181_ses-2 settings: ['check', 'execution', 'logging', 'monitoring']
201113-08:57:29,778 nipype.workflow INFO:
Running serially.
201113-08:57:29,787 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_vigilance_run-2/select_scan_params".
201113-08:57:29,820 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-08:57:30,64 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.select_scan_params".
201113-08:57:30,75 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_vigilance_run-2/s3_scan_params".
201113-08:57:30,84 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-08:57:30,325 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.s3_scan_params".
201113-08:57:30,329 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/scan_params_0".
201113-08:57:30,339 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-08:57:30,575 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.scan_params_0".
201113-08:57:30,577 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_vigilance_run-2/selectrest".
201113-08:57:30,610 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-08:57:30,847 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.selectrest".
201113-08:57:30,858 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_vigilance_run-2/check_for_s3".
201113-08:57:30,863 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-08:57:31,140 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.check_for_s3".
201113-08:57:31,141 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-181_ses-2/edit_func_0/_scan_vigilance_run-2/func_get_idx".
201113-08:57:31,148 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-08:57:31,388 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.edit_func_0.func_get_idx".
201113-08:57:31,390 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-181_ses-2/edit_func_0/_scan_vigilance_run-2/func_drop_trs".
201113-08:57:31,396 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-181/ses-2/func/sub-181_ses-2_task-vigilance_run-2_bold.nii.gz[0..68] -expr "a" -prefix sub-181_ses-2_task-vigilance_run-2_bold_calc.nii.gz
201113-08:57:31,658 nipype.interface INFO:
stderr 2020-11-13T08:57:31.658740:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:57:31,659 nipype.interface INFO:
stderr 2020-11-13T08:57:31.659213:++ Authored by: A cast of thousands
201113-08:57:34,686 nipype.interface INFO:
stderr 2020-11-13T08:57:34.686319:++ Output dataset ./sub-181_ses-2_task-vigilance_run-2_bold_calc.nii.gz
201113-08:57:34,893 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.edit_func_0.func_drop_trs".
201113-08:57:34,895 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique".
201113-08:57:34,925 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-181_ses-2_task-vigilance_run-2_bold_calc.nii.gz
201113-08:57:35,181 nipype.interface INFO:
stderr 2020-11-13T08:57:35.181392:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:57:35,181 nipype.interface INFO:
stderr 2020-11-13T08:57:35.181838:++ Authored by: RW Cox
201113-08:57:35,192 nipype.interface INFO:
stderr 2020-11-13T08:57:35.192921:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-181_ses-2_task-vigilance_run-2_bold_calc.nii.gz
201113-08:57:35,193 nipype.interface INFO:
stderr 2020-11-13T08:57:35.193875: + deoblique
201113-08:57:35,194 nipype.interface INFO:
stderr 2020-11-13T08:57:35.194169: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-181_ses-2_task-vigilance_run-2_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-181_ses-2_task-vigilance_run-2_bold_calc.nii.gz in NIFTI storage)
201113-08:57:37,252 nipype.interface INFO:
stderr 2020-11-13T08:57:37.252641:++ 3drefit processed 1 datasets
201113-08:57:37,516 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-08:57:37,518 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_reorient".
201113-08:57:37,526 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-2_task-vigilance_run-2_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_reorient/sub-181_ses-2_task-vigilance_run-2_bold_calc.nii.gz
201113-08:57:40,113 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-08:57:40,115 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_RPI".
201113-08:57:40,121 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_RPI/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample.nii.gz
201113-08:57:40,390 nipype.interface INFO:
stderr 2020-11-13T08:57:40.390707:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:57:40,391 nipype.interface INFO:
stderr 2020-11-13T08:57:40.391526:++ Authored by: KR Hammett & RW Cox
201113-08:57:40,675 nipype.interface INFO:
stderr 2020-11-13T08:57:40.675409:++ Output dataset ./sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_tstat.nii.gz
201113-08:57:40,892 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-08:57:40,893 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_generate_ref".
201113-08:57:40,900 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-2_task-vigilance_run-2_bold_calc_resample.1D -1Dmatrix_save sub-181_ses-2_task-vigilance_run-2_bold_calc_resample.aff12.1D -prefix sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_RPI/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_generate_ref/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample.nii.gz
201113-08:57:41,160 nipype.interface INFO:
stderr 2020-11-13T08:57:41.160557:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:57:41,161 nipype.interface INFO:
stderr 2020-11-13T08:57:41.161236:++ Authored by: RW Cox
201113-08:57:41,171 nipype.interface INFO:
stderr 2020-11-13T08:57:41.171440:++ Coarse del was 10, replaced with 3
201113-08:58:40,974 nipype.interface INFO:
stderr 2020-11-13T08:58:40.974204:++ Max displacement in automask = 0.52 (mm) at sub-brick 68
201113-08:58:40,974 nipype.interface INFO:
stderr 2020-11-13T08:58:40.974829:++ Max delta displ in automask = 0.37 (mm) at sub-brick 44
201113-08:58:43,27 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-08:58:43,29 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_motion".
201113-08:58:43,37 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_motion/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_volreg.nii.gz
201113-08:58:43,322 nipype.interface INFO:
stderr 2020-11-13T08:58:43.322697:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:58:43,323 nipype.interface INFO:
stderr 2020-11-13T08:58:43.323775:++ Authored by: KR Hammett & RW Cox
201113-08:58:43,608 nipype.interface INFO:
stderr 2020-11-13T08:58:43.608189:++ Output dataset ./sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_volreg_tstat.nii.gz
201113-08:58:43,829 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-08:58:43,853 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_motion_correct_mcflirt".
201113-08:58:43,861 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_reorient/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_motion_correct_mcflirt/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_motion/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-08:58:56,852 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-08:58:56,858 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/calculate_FDJ".
201113-08:58:56,865 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201113-08:58:57,101 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201113-08:58:57,103 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/sinker_0_frame_wise_displacement_jenkinson".
201113-08:58:57,111 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:58:57,345 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201113-08:58:57,347 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/sinker_0_max_displacement".
201113-08:58:57,356 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:58:57,594 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_max_displacement".
201113-08:58:57,596 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/sinker_0_coordinate_transformation".
201113-08:58:57,611 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:58:57,865 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_coordinate_transformation".
201113-08:58:57,873 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_mean_skull".
201113-08:58:57,880 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_mean_skull/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf.nii.gz
201113-08:58:58,141 nipype.interface INFO:
stderr 2020-11-13T08:58:58.141395:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:58:58,141 nipype.interface INFO:
stderr 2020-11-13T08:58:58.141883:++ Authored by: KR Hammett & RW Cox
201113-08:58:58,446 nipype.interface INFO:
stderr 2020-11-13T08:58:58.446628:++ Output dataset ./sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat.nii.gz
201113-08:58:58,665 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-08:58:58,667 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass".
201113-08:58:58,673 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_mean_skull/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-08:59:00,608 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-08:59:00,611 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_dilate".
201113-08:59:00,617 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_dilate/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-08:59:01,381 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-08:59:01,383 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_mask".
201113-08:59:01,389 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_dilate/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_mask/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-08:59:01,899 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-08:59:01,901 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/unifize".
201113-08:59:01,909 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/unifize/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-08:59:02,172 nipype.interface INFO:
stderr 2020-11-13T08:59:02.172565:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:00:24,112 nipype.interface INFO:
stderr 2020-11-13T09:00:24.112217: + Pre-processing: IAV..UW[s4651]Im
201113-09:00:24,140 nipype.interface INFO:
stderr 2020-11-13T09:00:24.140172:++ Output dataset ./uni.nii.gz
201113-09:00:24,140 nipype.interface INFO:
stderr 2020-11-13T09:00:24.140617:++ ===== Elapsed = 82.0 sec
201113-09:00:24,386 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:00:24,388 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass".
201113-09:00:24,395 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass/uni.nii.gz
201113-09:00:24,668 nipype.interface INFO:
stderr 2020-11-13T09:00:24.668214:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:00:24,668 nipype.interface INFO:
stderr 2020-11-13T09:00:24.668931:++ Authored by: Emperor Zhark
201113-09:00:24,671 nipype.interface INFO:
stderr 2020-11-13T09:00:24.671738:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass/uni.nii.gz
201113-09:00:24,677 nipype.interface INFO:
stderr 2020-11-13T09:00:24.677717:++ Forming automask
201113-09:00:24,679 nipype.interface INFO:
stderr 2020-11-13T09:00:24.679295: + Fixed clip level = 402.724518
201113-09:00:24,682 nipype.interface INFO:
stderr 2020-11-13T09:00:24.682715: + Used gradual clip level = 366.886932 .. 486.987457
201113-09:00:24,682 nipype.interface INFO:
stderr 2020-11-13T09:00:24.682941: + Number voxels above clip level = 34308
201113-09:00:24,683 nipype.interface INFO:
stderr 2020-11-13T09:00:24.683345: + Clustering voxels ...
201113-09:00:24,684 nipype.interface INFO:
stderr 2020-11-13T09:00:24.684598: + Largest cluster has 34305 voxels
201113-09:00:24,686 nipype.interface INFO:
stderr 2020-11-13T09:00:24.686077: + Clustering voxels ...
201113-09:00:24,687 nipype.interface INFO:
stderr 2020-11-13T09:00:24.687323: + Largest cluster has 33656 voxels
201113-09:00:24,690 nipype.interface INFO:
stderr 2020-11-13T09:00:24.690703: + Filled 930 voxels in small holes; now have 34586 voxels
201113-09:00:24,693 nipype.interface INFO:
stderr 2020-11-13T09:00:24.693972: + Filled 10 voxels in large holes; now have 34596 voxels
201113-09:00:24,695 nipype.interface INFO:
stderr 2020-11-13T09:00:24.695373: + Clustering voxels ...
201113-09:00:24,696 nipype.interface INFO:
stderr 2020-11-13T09:00:24.696546: + Largest cluster has 34590 voxels
201113-09:00:24,696 nipype.interface INFO:
stderr 2020-11-13T09:00:24.696780: + Clustering non-brain voxels ...
201113-09:00:24,696 nipype.interface INFO:
stderr 2020-11-13T09:00:24.696925: + Clustering voxels ...
201113-09:00:24,699 nipype.interface INFO:
stderr 2020-11-13T09:00:24.699892: + Largest cluster has 104600 voxels
201113-09:00:24,700 nipype.interface INFO:
stderr 2020-11-13T09:00:24.700282: + Mask now has 34664 voxels
201113-09:00:24,700 nipype.interface INFO:
stderr 2020-11-13T09:00:24.700446:++ Dilating automask
201113-09:00:24,716 nipype.interface INFO:
stderr 2020-11-13T09:00:24.716901: + Clustering voxels ...
201113-09:00:24,719 nipype.interface INFO:
stderr 2020-11-13T09:00:24.719604: + Largest cluster has 97859 voxels
201113-09:00:24,719 nipype.interface INFO:
stderr 2020-11-13T09:00:24.719949:++ 41405 voxels in the mask [out of 139264: 29.73%]
201113-09:00:24,720 nipype.interface INFO:
stderr 2020-11-13T09:00:24.720150:++ first 10 x-planes are zero [from R]
201113-09:00:24,720 nipype.interface INFO:
stderr 2020-11-13T09:00:24.720332:++ last 7 x-planes are zero [from L]
201113-09:00:24,720 nipype.interface INFO:
stderr 2020-11-13T09:00:24.720474:++ first 3 y-planes are zero [from P]
201113-09:00:24,720 nipype.interface INFO:
stderr 2020-11-13T09:00:24.720618:++ last 3 y-planes are zero [from A]
201113-09:00:24,720 nipype.interface INFO:
stderr 2020-11-13T09:00:24.720756:++ first 0 z-planes are zero [from I]
201113-09:00:24,720 nipype.interface INFO:
stderr 2020-11-13T09:00:24.720895:++ last 2 z-planes are zero [from S]
201113-09:00:24,725 nipype.interface INFO:
stderr 2020-11-13T09:00:24.725501:++ Output dataset ./uni_mask.nii.gz
201113-09:00:24,725 nipype.interface INFO:
stderr 2020-11-13T09:00:24.725744:++ applying mask to original data
201113-09:00:24,726 nipype.interface INFO:
stderr 2020-11-13T09:00:24.726576:++ Writing masked data
201113-09:00:24,743 nipype.interface INFO:
stderr 2020-11-13T09:00:24.742933:++ Output dataset ./uni_masked.nii.gz
201113-09:00:24,743 nipype.interface INFO:
stderr 2020-11-13T09:00:24.743533:++ CPU time = 0.000000 sec
201113-09:00:24,962 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:00:24,970 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/combine_masks".
201113-09:00:24,979 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/combine_masks/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:00:25,465 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:00:25,467 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/cal_DVARS".
201113-09:00:25,473 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201113-09:00:25,947 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201113-09:00:25,949 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_extract_brain".
201113-09:00:25,956 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_motion_correct_mcflirt/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/combine_masks/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-09:00:26,220 nipype.interface INFO:
stderr 2020-11-13T09:00:26.220214:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:00:26,220 nipype.interface INFO:
stderr 2020-11-13T09:00:26.220682:++ Authored by: A cast of thousands
201113-09:00:27,786 nipype.interface INFO:
stderr 2020-11-13T09:00:27.786400:++ Output dataset ./sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-09:00:28,3 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:00:28,5 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_normalize".
201113-09:00:28,10 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_extract_brain/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_normalize/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201113-09:00:29,541 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:00:29,543 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mask_normalize".
201113-09:00:29,549 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_normalize/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mask_normalize/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:00:30,394 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:00:30,395 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mean".
201113-09:00:30,402 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mean/sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-09:00:30,665 nipype.interface INFO:
stderr 2020-11-13T09:00:30.664891:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:00:30,665 nipype.interface INFO:
stderr 2020-11-13T09:00:30.665443:++ Authored by: KR Hammett & RW Cox
201113-09:00:30,854 nipype.interface INFO:
stderr 2020-11-13T09:00:30.854490:++ Output dataset ./sub-181_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz
201113-09:00:31,64 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:00:31,66 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/norm_motion_params".
201113-09:00:31,72 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:00:31,307 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:00:31,309 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-2/qc_motion_0/_scan_vigilance_run-2/motion_plot".
201113-09:00:31,314 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201113-09:00:31,781 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.qc_motion_0.motion_plot".
201113-09:00:31,783 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/sinker_0_qc___movement_trans_plot".
201113-09:00:31,791 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:00:32,3 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc___movement_trans_plot/_scan_vigilance_run-2/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc/movement_trans_plot/_scan_vigilance_run-2/motion_trans_plot.png
201113-09:00:32,28 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_trans_plot".
201113-09:00:32,31 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/sinker_0_qc___movement_rot_plot".
201113-09:00:32,39 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:00:32,250 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc___movement_rot_plot/_scan_vigilance_run-2/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc/movement_rot_plot/_scan_vigilance_run-2/motion_rot_plot.png
201113-09:00:32,273 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_rot_plot".
201113-09:00:32,275 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/calc_motion_parameters".
201113-09:00:32,282 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:00:32,520 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201113-09:00:32,522 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/sinker_0_motion_params".
201113-09:00:32,529 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:00:32,765 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_motion_params".
201113-09:00:32,767 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/calculate_FD".
201113-09:00:32,772 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201113-09:00:33,8 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201113-09:00:33,9 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/sinker_0_frame_wise_displacement_power".
201113-09:00:33,17 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:00:33,256 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_power".
201113-09:00:33,259 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/calc_power_parameters".
201113-09:00:33,265 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:00:33,504 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201113-09:00:33,506 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/sinker_0_power_params".
201113-09:00:33,513 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:00:33,749 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_power_params".
201113-09:00:33,751 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/sinker_0_movement_parameters".
201113-09:00:33,759 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:00:33,994 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_movement_parameters".
201113-09:00:33,995 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/func_despiked_0".
201113-09:00:34,2 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-181_ses-2_task-vigilance_run-2_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/func_despiked_0/sub-181_ses-2_task-vigilance_run-2_bold_calc.nii.gz
201113-09:00:34,263 nipype.interface INFO:
stderr 2020-11-13T09:00:34.263550:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:00:34,264 nipype.interface INFO:
stderr 2020-11-13T09:00:34.264029:++ Authored by: RW Cox
201113-09:00:34,266 nipype.interface INFO:
stderr 2020-11-13T09:00:34.266228:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:00:34,266 nipype.interface INFO:
stderr 2020-11-13T09:00:34.266228: such as /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/func_despiked_0/sub-181_ses-2_task-vigilance_run-2_bold_calc.nii.gz,
201113-09:00:34,266 nipype.interface INFO:
stderr 2020-11-13T09:00:34.266228: or viewing/combining it with volumes of differing obliquity,
201113-09:00:34,266 nipype.interface INFO:
stderr 2020-11-13T09:00:34.266228: you should consider running:
201113-09:00:34,266 nipype.interface INFO:
stderr 2020-11-13T09:00:34.266228: 3dWarp -deoblique
201113-09:00:34,266 nipype.interface INFO:
stderr 2020-11-13T09:00:34.266228: on this and other oblique datasets in the same session.
201113-09:00:34,266 nipype.interface INFO:
stderr 2020-11-13T09:00:34.266228: See 3dWarp -help for details.
201113-09:00:34,267 nipype.interface INFO:
stderr 2020-11-13T09:00:34.266938:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/func_despiked_0/sub-181_ses-2_task-vigilance_run-2_bold_calc.nii.gz is 14.900002 degrees from plumb.
201113-09:00:34,267 nipype.interface INFO:
stderr 2020-11-13T09:00:34.267175:++ Input dataset is in short format, but output will be in float format
201113-09:00:34,267 nipype.interface INFO:
stderr 2020-11-13T09:00:34.267359:++ ignoring first 0 time points, using last 69
201113-09:00:34,267 nipype.interface INFO:
stderr 2020-11-13T09:00:34.267498:++ using 69 time points => -corder 2
201113-09:00:34,267 nipype.interface INFO:
stderr 2020-11-13T09:00:34.267633:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/func_despiked_0/sub-181_ses-2_task-vigilance_run-2_bold_calc.nii.gz
201113-09:00:34,552 nipype.interface INFO:
stderr 2020-11-13T09:00:34.551991:++ 38925 voxels in the automask [out of 139264 in dataset]
201113-09:00:34,557 nipype.interface INFO:
stderr 2020-11-13T09:00:34.557493:++ 65829 voxels in the dilated automask [out of 139264 in dataset]
201113-09:00:34,563 nipype.interface INFO:
stderr 2020-11-13T09:00:34.563902:++ Procesing time series with OLD model fit algorithm
201113-09:00:34,564 nipype.interface INFO:
stderr 2020-11-13T09:00:34.564368:++ smash edit thresholds: 3.1 .. 5.0 MADs
201113-09:00:34,564 nipype.interface INFO:
stderr 2020-11-13T09:00:34.564579: + [ 3.457% .. 0.072% of normal distribution]
201113-09:00:34,564 nipype.interface INFO:
stderr 2020-11-13T09:00:34.564741: + [ 8.839% .. 3.125% of Laplace distribution]
201113-09:00:34,564 nipype.interface INFO:
stderr 2020-11-13T09:00:34.564899:++ start OpenMP thread #0
201113-09:00:36,649 nipype.interface INFO:
stderr 2020-11-13T09:00:36.649224:.............................
201113-09:00:36,649 nipype.interface INFO:
stderr 2020-11-13T09:00:36.649611:++ Elapsed despike time = 2s 85ms
201113-09:00:36,649 nipype.interface INFO:
stderr 2020-11-13T09:00:36.649763:
201113-09:00:36,650 nipype.interface INFO:
stderr 2020-11-13T09:00:36.650366:++ FINAL: 4542201 data points, 324787 edits [7.150%], 43286 big edits [0.953%]
201113-09:00:39,176 nipype.interface INFO:
stderr 2020-11-13T09:00:39.176031:++ Output dataset ./sub-181_ses-2_task-vigilance_run-2_bold_calc_despike.nii.gz
201113-09:00:39,399 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_despiked_0".
201113-09:00:39,401 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-2/slice_timing".
201113-09:00:39,410 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:00:39,410 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-2/slice_timing/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike.nii.gz
201113-09:00:39,623 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:00:39,664 nipype.interface INFO:
stderr 2020-11-13T09:00:39.664867:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:00:39,667 nipype.interface INFO:
stderr 2020-11-13T09:00:39.667306:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:00:39,667 nipype.interface INFO:
stderr 2020-11-13T09:00:39.667306: such as /outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-2/slice_timing/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike.nii.gz,
201113-09:00:39,667 nipype.interface INFO:
stderr 2020-11-13T09:00:39.667306: or viewing/combining it with volumes of differing obliquity,
201113-09:00:39,667 nipype.interface INFO:
stderr 2020-11-13T09:00:39.667306: you should consider running:
201113-09:00:39,667 nipype.interface INFO:
stderr 2020-11-13T09:00:39.667306: 3dWarp -deoblique
201113-09:00:39,667 nipype.interface INFO:
stderr 2020-11-13T09:00:39.667306: on this and other oblique datasets in the same session.
201113-09:00:39,667 nipype.interface INFO:
stderr 2020-11-13T09:00:39.667306: See 3dWarp -help for details.
201113-09:00:39,668 nipype.interface INFO:
stderr 2020-11-13T09:00:39.668258:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-2/slice_timing/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike.nii.gz is 14.900002 degrees from plumb.
201113-09:00:42,561 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_slice_timing_correction_0.slice_timing".
201113-09:00:42,563 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique".
201113-09:00:42,603 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift.nii.gz
201113-09:00:42,863 nipype.interface INFO:
stderr 2020-11-13T09:00:42.863454:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:00:42,863 nipype.interface INFO:
stderr 2020-11-13T09:00:42.863917:++ Authored by: RW Cox
201113-09:00:42,866 nipype.interface INFO:
stderr 2020-11-13T09:00:42.866465:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift.nii.gz
201113-09:00:42,867 nipype.interface INFO:
stderr 2020-11-13T09:00:42.867088: + deoblique
201113-09:00:42,867 nipype.interface INFO:
stderr 2020-11-13T09:00:42.867273: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201113-09:00:44,140 nipype.interface INFO:
stderr 2020-11-13T09:00:44.140819:++ 3drefit processed 1 datasets
201113-09:00:44,358 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:00:44,360 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_reorient".
201113-09:00:44,367 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_reorient/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift.nii.gz
201113-09:00:46,261 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:00:46,263 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_RPI".
201113-09:00:46,270 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_RPI/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample.nii.gz
201113-09:00:46,531 nipype.interface INFO:
stderr 2020-11-13T09:00:46.531842:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:00:46,532 nipype.interface INFO:
stderr 2020-11-13T09:00:46.532305:++ Authored by: KR Hammett & RW Cox
201113-09:00:46,880 nipype.interface INFO:
stderr 2020-11-13T09:00:46.880462:++ Output dataset ./sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz
201113-09:00:47,88 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:00:47,90 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_generate_ref".
201113-09:00:47,97 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_RPI/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_generate_ref/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample.nii.gz
201113-09:00:47,359 nipype.interface INFO:
stderr 2020-11-13T09:00:47.359717:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:00:47,360 nipype.interface INFO:
stderr 2020-11-13T09:00:47.360386:++ Authored by: RW Cox
201113-09:00:47,369 nipype.interface INFO:
stderr 2020-11-13T09:00:47.369770:++ Coarse del was 10, replaced with 3
201113-09:01:47,108 nipype.interface INFO:
stderr 2020-11-13T09:01:47.107893:++ Max displacement in automask = 0.50 (mm) at sub-brick 0
201113-09:01:47,108 nipype.interface INFO:
stderr 2020-11-13T09:01:47.108816:++ Max delta displ in automask = 0.28 (mm) at sub-brick 44
201113-09:01:49,781 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:01:49,783 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_motion".
201113-09:01:49,789 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_motion/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz
201113-09:01:50,54 nipype.interface INFO:
stderr 2020-11-13T09:01:50.054870:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:01:50,55 nipype.interface INFO:
stderr 2020-11-13T09:01:50.055357:++ Authored by: KR Hammett & RW Cox
201113-09:01:50,514 nipype.interface INFO:
stderr 2020-11-13T09:01:50.514549:++ Output dataset ./sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201113-09:01:50,723 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:01:50,724 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_motion_correct_mcflirt".
201113-09:01:50,731 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_reorient/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_motion_correct_mcflirt/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_motion/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:02:02,735 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:02:02,746 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/sinker_0_motion_correct".
201113-09:02:02,755 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:02:02,991 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_motion_correct".
201113-09:02:02,993 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_mean_skull".
201113-09:02:03,0 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_mean_skull/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz
201113-09:02:03,272 nipype.interface INFO:
stderr 2020-11-13T09:02:03.272175:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:02:03,272 nipype.interface INFO:
stderr 2020-11-13T09:02:03.272818:++ Authored by: KR Hammett & RW Cox
201113-09:02:03,650 nipype.interface INFO:
stderr 2020-11-13T09:02:03.650314:++ Output dataset ./sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201113-09:02:03,876 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:02:03,877 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass".
201113-09:02:03,884 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_mean_skull/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:02:05,823 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:02:05,824 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_dilate".
201113-09:02:05,830 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_dilate/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:02:06,583 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:02:06,584 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_mask".
201113-09:02:06,591 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_dilate/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_mask/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:02:07,95 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:02:07,96 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/unifize".
201113-09:02:07,103 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/unifize/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:02:07,363 nipype.interface INFO:
stderr 2020-11-13T09:02:07.363582:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:03:28,879 nipype.interface INFO:
stderr 2020-11-13T09:03:28.878895: + Pre-processing: IAV..UW[s4644]Im
201113-09:03:28,896 nipype.interface INFO:
stderr 2020-11-13T09:03:28.896495:++ Output dataset ./uni.nii.gz
201113-09:03:28,897 nipype.interface INFO:
stderr 2020-11-13T09:03:28.897175:++ ===== Elapsed = 81.5 sec
201113-09:03:29,139 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:03:29,141 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass".
201113-09:03:29,150 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass/uni.nii.gz
201113-09:03:29,412 nipype.interface INFO:
stderr 2020-11-13T09:03:29.411981:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:03:29,412 nipype.interface INFO:
stderr 2020-11-13T09:03:29.412467:++ Authored by: Emperor Zhark
201113-09:03:29,414 nipype.interface INFO:
stderr 2020-11-13T09:03:29.414602:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass/uni.nii.gz
201113-09:03:29,418 nipype.interface INFO:
stderr 2020-11-13T09:03:29.418865:++ Forming automask
201113-09:03:29,420 nipype.interface INFO:
stderr 2020-11-13T09:03:29.420919: + Fixed clip level = 402.735291
201113-09:03:29,425 nipype.interface INFO:
stderr 2020-11-13T09:03:29.425276: + Used gradual clip level = 366.550751 .. 487.150787
201113-09:03:29,425 nipype.interface INFO:
stderr 2020-11-13T09:03:29.425608: + Number voxels above clip level = 34306
201113-09:03:29,425 nipype.interface INFO:
stderr 2020-11-13T09:03:29.425802: + Clustering voxels ...
201113-09:03:29,427 nipype.interface INFO:
stderr 2020-11-13T09:03:29.427570: + Largest cluster has 34303 voxels
201113-09:03:29,429 nipype.interface INFO:
stderr 2020-11-13T09:03:29.429052: + Clustering voxels ...
201113-09:03:29,430 nipype.interface INFO:
stderr 2020-11-13T09:03:29.430299: + Largest cluster has 33637 voxels
201113-09:03:29,433 nipype.interface INFO:
stderr 2020-11-13T09:03:29.433774: + Filled 921 voxels in small holes; now have 34558 voxels
201113-09:03:29,437 nipype.interface INFO:
stderr 2020-11-13T09:03:29.437125: + Filled 10 voxels in large holes; now have 34568 voxels
201113-09:03:29,438 nipype.interface INFO:
stderr 2020-11-13T09:03:29.438499: + Clustering voxels ...
201113-09:03:29,439 nipype.interface INFO:
stderr 2020-11-13T09:03:29.439715: + Largest cluster has 34566 voxels
201113-09:03:29,440 nipype.interface INFO:
stderr 2020-11-13T09:03:29.439982: + Clustering non-brain voxels ...
201113-09:03:29,440 nipype.interface INFO:
stderr 2020-11-13T09:03:29.440138: + Clustering voxels ...
201113-09:03:29,444 nipype.interface INFO:
stderr 2020-11-13T09:03:29.444469: + Largest cluster has 104624 voxels
201113-09:03:29,444 nipype.interface INFO:
stderr 2020-11-13T09:03:29.444881: + Mask now has 34640 voxels
201113-09:03:29,445 nipype.interface INFO:
stderr 2020-11-13T09:03:29.445265:++ Dilating automask
201113-09:03:29,462 nipype.interface INFO:
stderr 2020-11-13T09:03:29.462119: + Clustering voxels ...
201113-09:03:29,464 nipype.interface INFO:
stderr 2020-11-13T09:03:29.464785: + Largest cluster has 97862 voxels
201113-09:03:29,465 nipype.interface INFO:
stderr 2020-11-13T09:03:29.465128:++ 41402 voxels in the mask [out of 139264: 29.73%]
201113-09:03:29,465 nipype.interface INFO:
stderr 2020-11-13T09:03:29.465304:++ first 10 x-planes are zero [from R]
201113-09:03:29,465 nipype.interface INFO:
stderr 2020-11-13T09:03:29.465469:++ last 7 x-planes are zero [from L]
201113-09:03:29,465 nipype.interface INFO:
stderr 2020-11-13T09:03:29.465615:++ first 3 y-planes are zero [from P]
201113-09:03:29,465 nipype.interface INFO:
stderr 2020-11-13T09:03:29.465758:++ last 3 y-planes are zero [from A]
201113-09:03:29,465 nipype.interface INFO:
stderr 2020-11-13T09:03:29.465891:++ first 0 z-planes are zero [from I]
201113-09:03:29,466 nipype.interface INFO:
stderr 2020-11-13T09:03:29.466057:++ last 2 z-planes are zero [from S]
201113-09:03:29,470 nipype.interface INFO:
stderr 2020-11-13T09:03:29.470861:++ Output dataset ./uni_mask.nii.gz
201113-09:03:29,471 nipype.interface INFO:
stderr 2020-11-13T09:03:29.471107:++ applying mask to original data
201113-09:03:29,472 nipype.interface INFO:
stderr 2020-11-13T09:03:29.471967:++ Writing masked data
201113-09:03:29,487 nipype.interface INFO:
stderr 2020-11-13T09:03:29.487604:++ Output dataset ./uni_masked.nii.gz
201113-09:03:29,488 nipype.interface INFO:
stderr 2020-11-13T09:03:29.488389:++ CPU time = 0.000000 sec
201113-09:03:29,709 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:03:29,711 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/combine_masks".
201113-09:03:29,719 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/combine_masks/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:03:30,207 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:03:30,209 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201113-09:03:30,215 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-09:03:30,450 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201113-09:03:30,452 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201113-09:03:30,459 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:03:30,720 nipype.interface INFO:
stderr 2020-11-13T09:03:30.720202:++ no -frac option: defaulting to -union
201113-09:03:30,720 nipype.interface INFO:
stderr 2020-11-13T09:03:30.720684:++ processing 1 input dataset(s), NN=2...
201113-09:03:30,720 nipype.interface INFO:
stderr 2020-11-13T09:03:30.720843:++ padding all datasets by 0 (for dilations)
201113-09:03:30,725 nipype.interface INFO:
stderr 2020-11-13T09:03:30.725595:++ frac 0 over 1 volumes gives min count 0
201113-09:03:30,726 nipype.interface INFO:
stderr 2020-11-13T09:03:30.726059:++ voxel limits: 0 clipped, 41262 survived, 98002 were zero
201113-09:03:30,726 nipype.interface INFO:
stderr 2020-11-13T09:03:30.726231:++ writing result sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201113-09:03:30,731 nipype.interface INFO:
stderr 2020-11-13T09:03:30.731307:++ Output dataset ./sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201113-09:03:30,949 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201113-09:03:30,951 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/sinker_0_functional_brain_mask".
201113-09:03:30,959 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:03:31,196 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_functional_brain_mask".
201113-09:03:31,207 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/functional_brain_mask_derivative_0".
201113-09:03:31,213 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201113-09:03:31,429 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201113-09:03:31,435 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:03:32,26 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201113-09:03:32,46 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.functional_brain_mask_derivative_0".
201113-09:03:32,48 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_extract_brain".
201113-09:03:32,55 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_motion_correct_mcflirt/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/combine_masks/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:03:32,319 nipype.interface INFO:
stderr 2020-11-13T09:03:32.319285:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:03:32,319 nipype.interface INFO:
stderr 2020-11-13T09:03:32.319776:++ Authored by: A cast of thousands
201113-09:03:34,70 nipype.interface INFO:
stderr 2020-11-13T09:03:34.070172:++ Output dataset ./sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:03:34,296 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:03:34,299 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_normalize".
201113-09:03:34,304 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_extract_brain/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_normalize/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201113-09:03:35,884 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:03:35,886 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201113-09:03:35,892 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_normalize/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:03:36,645 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201113-09:03:36,648 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201113-09:03:36,654 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:03:36,919 nipype.interface INFO:
stderr 2020-11-13T09:03:36.919787:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:03:36,920 nipype.interface INFO:
stderr 2020-11-13T09:03:36.920307:++ Authored by: KR Hammett & RW Cox
201113-09:03:37,245 nipype.interface INFO:
stderr 2020-11-13T09:03:37.245006:++ Output dataset ./sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:03:37,474 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.functional_mean".
201113-09:03:37,475 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-181_ses-2/qc_snr_0/_scan_vigilance_run-2/std_dev".
201113-09:03:37,484 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/combine_masks/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/qc_snr_0/_scan_vigilance_run-2/std_dev/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:03:37,745 nipype.interface INFO:
stderr 2020-11-13T09:03:37.745697:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:03:37,746 nipype.interface INFO:
stderr 2020-11-13T09:03:37.746429:++ Authored by: KR Hammett & RW Cox
201113-09:03:38,51 nipype.interface INFO:
stderr 2020-11-13T09:03:38.051759:++ Output dataset ./sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:03:38,275 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.qc_snr_0.std_dev".
201113-09:03:38,277 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/sinker_0_functional_preprocessed".
201113-09:03:38,285 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:03:38,524 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed".
201113-09:03:38,526 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mask_normalize".
201113-09:03:38,532 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_normalize/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mask_normalize/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:03:39,390 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:03:39,393 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/sinker_0_functional_preprocessed_mask".
201113-09:03:39,401 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:03:39,637 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed_mask".
201113-09:03:39,639 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mean".
201113-09:03:39,646 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mean/sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:03:39,914 nipype.interface INFO:
stderr 2020-11-13T09:03:39.913885:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:03:39,914 nipype.interface INFO:
stderr 2020-11-13T09:03:39.914388:++ Authored by: KR Hammett & RW Cox
201113-09:03:40,231 nipype.interface INFO:
stderr 2020-11-13T09:03:40.231028:++ Output dataset ./sub-181_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201113-09:03:40,454 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:03:40,456 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/sinker_0_mean_functional".
201113-09:03:40,463 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:03:40,695 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_mean_functional".
201113-09:03:40,696 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/norm_motion_params".
201113-09:03:40,702 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:03:40,936 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:03:40,937 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/sinker_0_slice_time_corrected".
201113-09:03:40,944 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:03:41,176 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_slice_time_corrected".
201113-09:03:41,179 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-2/sinker_0_raw_functional".
201113-09:03:41,187 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:03:41,503 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_raw_functional".
201113-09:03:41,505 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_vigilance_run-2/check_func_scan".
201113-09:03:41,538 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201113-09:03:41,774 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.check_func_scan".
201113-09:03:41,785 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_vigilance_run-1/select_scan_params".
201113-09:03:41,815 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:03:42,55 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.select_scan_params".
201113-09:03:42,66 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_vigilance_run-1/s3_scan_params".
201113-09:03:42,74 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:03:42,304 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.s3_scan_params".
201113-09:03:42,307 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/scan_params_0".
201113-09:03:42,316 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-09:03:42,547 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.scan_params_0".
201113-09:03:42,549 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_vigilance_run-1/selectrest".
201113-09:03:42,580 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-09:03:42,814 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.selectrest".
201113-09:03:42,824 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_vigilance_run-1/check_for_s3".
201113-09:03:42,829 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-09:03:43,137 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.check_for_s3".
201113-09:03:43,139 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-181_ses-2/edit_func_0/_scan_vigilance_run-1/func_get_idx".
201113-09:03:43,145 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-09:03:43,384 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.edit_func_0.func_get_idx".
201113-09:03:43,386 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-181_ses-2/edit_func_0/_scan_vigilance_run-1/func_drop_trs".
201113-09:03:43,393 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-181/ses-2/func/sub-181_ses-2_task-vigilance_run-1_bold.nii.gz[0..68] -expr "a" -prefix sub-181_ses-2_task-vigilance_run-1_bold_calc.nii.gz
201113-09:03:43,661 nipype.interface INFO:
stderr 2020-11-13T09:03:43.660961:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:03:43,661 nipype.interface INFO:
stderr 2020-11-13T09:03:43.661489:++ Authored by: A cast of thousands
201113-09:03:46,724 nipype.interface INFO:
stderr 2020-11-13T09:03:46.724412:++ Output dataset ./sub-181_ses-2_task-vigilance_run-1_bold_calc.nii.gz
201113-09:03:46,944 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.edit_func_0.func_drop_trs".
201113-09:03:46,945 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique".
201113-09:03:46,976 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-181_ses-2_task-vigilance_run-1_bold_calc.nii.gz
201113-09:03:47,239 nipype.interface INFO:
stderr 2020-11-13T09:03:47.239289:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:03:47,239 nipype.interface INFO:
stderr 2020-11-13T09:03:47.239788:++ Authored by: RW Cox
201113-09:03:47,242 nipype.interface INFO:
stderr 2020-11-13T09:03:47.242257:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-181_ses-2_task-vigilance_run-1_bold_calc.nii.gz
201113-09:03:47,242 nipype.interface INFO:
stderr 2020-11-13T09:03:47.242905: + deoblique
201113-09:03:47,243 nipype.interface INFO:
stderr 2020-11-13T09:03:47.243355: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-181_ses-2_task-vigilance_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-181_ses-2_task-vigilance_run-1_bold_calc.nii.gz in NIFTI storage)
201113-09:03:49,243 nipype.interface INFO:
stderr 2020-11-13T09:03:49.243116:++ 3drefit processed 1 datasets
201113-09:03:49,476 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:03:49,478 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_reorient".
201113-09:03:49,484 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-2_task-vigilance_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_reorient/sub-181_ses-2_task-vigilance_run-1_bold_calc.nii.gz
201113-09:03:52,92 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:03:52,94 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_RPI".
201113-09:03:52,101 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_RPI/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample.nii.gz
201113-09:03:52,363 nipype.interface INFO:
stderr 2020-11-13T09:03:52.363000:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:03:52,363 nipype.interface INFO:
stderr 2020-11-13T09:03:52.363454:++ Authored by: KR Hammett & RW Cox
201113-09:03:52,649 nipype.interface INFO:
stderr 2020-11-13T09:03:52.649030:++ Output dataset ./sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_tstat.nii.gz
201113-09:03:52,867 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:03:52,869 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_generate_ref".
201113-09:03:52,876 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-2_task-vigilance_run-1_bold_calc_resample.1D -1Dmatrix_save sub-181_ses-2_task-vigilance_run-1_bold_calc_resample.aff12.1D -prefix sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_RPI/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_generate_ref/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample.nii.gz
201113-09:03:53,140 nipype.interface INFO:
stderr 2020-11-13T09:03:53.140223:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:03:53,140 nipype.interface INFO:
stderr 2020-11-13T09:03:53.140747:++ Authored by: RW Cox
201113-09:03:53,152 nipype.interface INFO:
stderr 2020-11-13T09:03:53.152460:++ Coarse del was 10, replaced with 3
201113-09:04:53,110 nipype.interface INFO:
stderr 2020-11-13T09:04:53.110388:++ Max displacement in automask = 0.43 (mm) at sub-brick 68
201113-09:04:53,110 nipype.interface INFO:
stderr 2020-11-13T09:04:53.110958:++ Max delta displ in automask = 0.37 (mm) at sub-brick 37
201113-09:04:55,195 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:04:55,210 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_motion".
201113-09:04:55,217 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_motion/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_volreg.nii.gz
201113-09:04:55,486 nipype.interface INFO:
stderr 2020-11-13T09:04:55.486156:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:04:55,486 nipype.interface INFO:
stderr 2020-11-13T09:04:55.486658:++ Authored by: KR Hammett & RW Cox
201113-09:04:55,772 nipype.interface INFO:
stderr 2020-11-13T09:04:55.772535:++ Output dataset ./sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_volreg_tstat.nii.gz
201113-09:04:55,992 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:04:55,994 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_motion_correct_mcflirt".
201113-09:04:56,2 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_reorient/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_motion_correct_mcflirt/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_motion/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:05:09,337 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:05:09,343 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/calculate_FDJ".
201113-09:05:09,350 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201113-09:05:09,585 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201113-09:05:09,587 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/sinker_0_frame_wise_displacement_jenkinson".
201113-09:05:09,594 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:05:09,829 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201113-09:05:09,831 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/sinker_0_max_displacement".
201113-09:05:09,839 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:05:10,73 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_max_displacement".
201113-09:05:10,75 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/sinker_0_coordinate_transformation".
201113-09:05:10,90 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:05:10,342 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_coordinate_transformation".
201113-09:05:10,349 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_mean_skull".
201113-09:05:10,356 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_mean_skull/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf.nii.gz
201113-09:05:10,621 nipype.interface INFO:
stderr 2020-11-13T09:05:10.621193:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:05:10,621 nipype.interface INFO:
stderr 2020-11-13T09:05:10.621689:++ Authored by: KR Hammett & RW Cox
201113-09:05:10,927 nipype.interface INFO:
stderr 2020-11-13T09:05:10.927432:++ Output dataset ./sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat.nii.gz
201113-09:05:11,150 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:05:11,152 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass".
201113-09:05:11,159 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_mean_skull/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:05:13,89 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:05:13,91 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_dilate".
201113-09:05:13,96 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_dilate/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:05:13,817 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:05:13,819 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_mask".
201113-09:05:13,825 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_dilate/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_mask/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:05:14,311 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:05:14,313 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/unifize".
201113-09:05:14,319 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/unifize/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:05:14,582 nipype.interface INFO:
stderr 2020-11-13T09:05:14.582676:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:06:36,198 nipype.interface INFO:
stderr 2020-11-13T09:06:36.198545: + Pre-processing: IAV..UW[s4667]Im
201113-09:06:36,215 nipype.interface INFO:
stderr 2020-11-13T09:06:36.215532:++ Output dataset ./uni.nii.gz
201113-09:06:36,216 nipype.interface INFO:
stderr 2020-11-13T09:06:36.215987:++ ===== Elapsed = 81.6 sec
201113-09:06:36,454 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:06:36,456 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass".
201113-09:06:36,465 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:06:36,736 nipype.interface INFO:
stderr 2020-11-13T09:06:36.736159:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:06:36,736 nipype.interface INFO:
stderr 2020-11-13T09:06:36.736675:++ Authored by: Emperor Zhark
201113-09:06:36,739 nipype.interface INFO:
stderr 2020-11-13T09:06:36.739583:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:06:36,746 nipype.interface INFO:
stderr 2020-11-13T09:06:36.746565:++ Forming automask
201113-09:06:36,748 nipype.interface INFO:
stderr 2020-11-13T09:06:36.748750: + Fixed clip level = 404.718445
201113-09:06:36,752 nipype.interface INFO:
stderr 2020-11-13T09:06:36.752193: + Used gradual clip level = 367.955475 .. 482.865295
201113-09:06:36,752 nipype.interface INFO:
stderr 2020-11-13T09:06:36.752479: + Number voxels above clip level = 34264
201113-09:06:36,752 nipype.interface INFO:
stderr 2020-11-13T09:06:36.752636: + Clustering voxels ...
201113-09:06:36,753 nipype.interface INFO:
stderr 2020-11-13T09:06:36.753822: + Largest cluster has 34263 voxels
201113-09:06:36,755 nipype.interface INFO:
stderr 2020-11-13T09:06:36.755352: + Clustering voxels ...
201113-09:06:36,756 nipype.interface INFO:
stderr 2020-11-13T09:06:36.756552: + Largest cluster has 33609 voxels
201113-09:06:36,759 nipype.interface INFO:
stderr 2020-11-13T09:06:36.759941: + Filled 901 voxels in small holes; now have 34510 voxels
201113-09:06:36,764 nipype.interface INFO:
stderr 2020-11-13T09:06:36.764258: + Filled 11 voxels in large holes; now have 34521 voxels
201113-09:06:36,765 nipype.interface INFO:
stderr 2020-11-13T09:06:36.765722: + Clustering voxels ...
201113-09:06:36,766 nipype.interface INFO:
stderr 2020-11-13T09:06:36.766903: + Largest cluster has 34516 voxels
201113-09:06:36,767 nipype.interface INFO:
stderr 2020-11-13T09:06:36.767179: + Clustering non-brain voxels ...
201113-09:06:36,767 nipype.interface INFO:
stderr 2020-11-13T09:06:36.767346: + Clustering voxels ...
201113-09:06:36,770 nipype.interface INFO:
stderr 2020-11-13T09:06:36.770251: + Largest cluster has 104662 voxels
201113-09:06:36,770 nipype.interface INFO:
stderr 2020-11-13T09:06:36.770601: + Mask now has 34602 voxels
201113-09:06:36,770 nipype.interface INFO:
stderr 2020-11-13T09:06:36.770759:++ Dilating automask
201113-09:06:36,784 nipype.interface INFO:
stderr 2020-11-13T09:06:36.784437: + Clustering voxels ...
201113-09:06:36,787 nipype.interface INFO:
stderr 2020-11-13T09:06:36.787075: + Largest cluster has 97880 voxels
201113-09:06:36,787 nipype.interface INFO:
stderr 2020-11-13T09:06:36.787419:++ 41384 voxels in the mask [out of 139264: 29.72%]
201113-09:06:36,787 nipype.interface INFO:
stderr 2020-11-13T09:06:36.787596:++ first 10 x-planes are zero [from R]
201113-09:06:36,787 nipype.interface INFO:
stderr 2020-11-13T09:06:36.787757:++ last 7 x-planes are zero [from L]
201113-09:06:36,787 nipype.interface INFO:
stderr 2020-11-13T09:06:36.787899:++ first 3 y-planes are zero [from P]
201113-09:06:36,788 nipype.interface INFO:
stderr 2020-11-13T09:06:36.788049:++ last 3 y-planes are zero [from A]
201113-09:06:36,788 nipype.interface INFO:
stderr 2020-11-13T09:06:36.788184:++ first 0 z-planes are zero [from I]
201113-09:06:36,788 nipype.interface INFO:
stderr 2020-11-13T09:06:36.788328:++ last 2 z-planes are zero [from S]
201113-09:06:36,793 nipype.interface INFO:
stderr 2020-11-13T09:06:36.793048:++ Output dataset ./uni_mask.nii.gz
201113-09:06:36,793 nipype.interface INFO:
stderr 2020-11-13T09:06:36.793306:++ applying mask to original data
201113-09:06:36,794 nipype.interface INFO:
stderr 2020-11-13T09:06:36.794421:++ Writing masked data
201113-09:06:36,810 nipype.interface INFO:
stderr 2020-11-13T09:06:36.810578:++ Output dataset ./uni_masked.nii.gz
201113-09:06:36,811 nipype.interface INFO:
stderr 2020-11-13T09:06:36.811153:++ CPU time = 0.000000 sec
201113-09:06:37,35 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:06:37,43 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/combine_masks".
201113-09:06:37,51 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/combine_masks/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:06:37,543 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:06:37,545 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/cal_DVARS".
201113-09:06:37,551 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201113-09:06:38,35 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201113-09:06:38,37 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_extract_brain".
201113-09:06:38,45 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_motion_correct_mcflirt/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/combine_masks/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:06:38,306 nipype.interface INFO:
stderr 2020-11-13T09:06:38.306650:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:06:38,307 nipype.interface INFO:
stderr 2020-11-13T09:06:38.307244:++ Authored by: A cast of thousands
201113-09:06:39,879 nipype.interface INFO:
stderr 2020-11-13T09:06:39.879301:++ Output dataset ./sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:06:40,117 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:06:40,119 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_normalize".
201113-09:06:40,125 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_extract_brain/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_normalize/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201113-09:06:41,605 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:06:41,607 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mask_normalize".
201113-09:06:41,613 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_normalize/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mask_normalize/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:06:42,457 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:06:42,459 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mean".
201113-09:06:42,465 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mean/sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:06:42,735 nipype.interface INFO:
stderr 2020-11-13T09:06:42.735101:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:06:42,735 nipype.interface INFO:
stderr 2020-11-13T09:06:42.735647:++ Authored by: KR Hammett & RW Cox
201113-09:06:42,926 nipype.interface INFO:
stderr 2020-11-13T09:06:42.926547:++ Output dataset ./sub-181_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201113-09:06:43,132 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:06:43,134 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/norm_motion_params".
201113-09:06:43,138 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:06:43,373 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:06:43,374 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-2/qc_motion_0/_scan_vigilance_run-1/motion_plot".
201113-09:06:43,379 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201113-09:06:43,838 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.qc_motion_0.motion_plot".
201113-09:06:43,840 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/sinker_0_qc___movement_trans_plot".
201113-09:06:43,848 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:06:44,60 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc___movement_trans_plot/_scan_vigilance_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc/movement_trans_plot/_scan_vigilance_run-1/motion_trans_plot.png
201113-09:06:44,80 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_trans_plot".
201113-09:06:44,82 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/sinker_0_qc___movement_rot_plot".
201113-09:06:44,89 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:06:44,300 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc___movement_rot_plot/_scan_vigilance_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc/movement_rot_plot/_scan_vigilance_run-1/motion_rot_plot.png
201113-09:06:44,321 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_rot_plot".
201113-09:06:44,323 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/calc_motion_parameters".
201113-09:06:44,330 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:06:44,570 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201113-09:06:44,572 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/sinker_0_motion_params".
201113-09:06:44,579 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:06:44,810 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_motion_params".
201113-09:06:44,813 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/calculate_FD".
201113-09:06:44,818 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201113-09:06:45,51 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201113-09:06:45,52 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/sinker_0_frame_wise_displacement_power".
201113-09:06:45,60 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:06:45,294 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_power".
201113-09:06:45,296 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/calc_power_parameters".
201113-09:06:45,301 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:06:45,534 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201113-09:06:45,535 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/sinker_0_power_params".
201113-09:06:45,544 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:06:45,779 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_power_params".
201113-09:06:45,781 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/sinker_0_movement_parameters".
201113-09:06:45,789 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:06:46,27 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_movement_parameters".
201113-09:06:46,29 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/func_despiked_0".
201113-09:06:46,35 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-181_ses-2_task-vigilance_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/func_despiked_0/sub-181_ses-2_task-vigilance_run-1_bold_calc.nii.gz
201113-09:06:46,302 nipype.interface INFO:
stderr 2020-11-13T09:06:46.302487:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:06:46,303 nipype.interface INFO:
stderr 2020-11-13T09:06:46.303067:++ Authored by: RW Cox
201113-09:06:46,305 nipype.interface INFO:
stderr 2020-11-13T09:06:46.305405:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:06:46,305 nipype.interface INFO:
stderr 2020-11-13T09:06:46.305405: such as /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/func_despiked_0/sub-181_ses-2_task-vigilance_run-1_bold_calc.nii.gz,
201113-09:06:46,305 nipype.interface INFO:
stderr 2020-11-13T09:06:46.305405: or viewing/combining it with volumes of differing obliquity,
201113-09:06:46,305 nipype.interface INFO:
stderr 2020-11-13T09:06:46.305405: you should consider running:
201113-09:06:46,305 nipype.interface INFO:
stderr 2020-11-13T09:06:46.305405: 3dWarp -deoblique
201113-09:06:46,306 nipype.interface INFO:
stderr 2020-11-13T09:06:46.305405: on this and other oblique datasets in the same session.
201113-09:06:46,306 nipype.interface INFO:
stderr 2020-11-13T09:06:46.305405: See 3dWarp -help for details.
201113-09:06:46,306 nipype.interface INFO:
stderr 2020-11-13T09:06:46.306278:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/func_despiked_0/sub-181_ses-2_task-vigilance_run-1_bold_calc.nii.gz is 14.900002 degrees from plumb.
201113-09:06:46,306 nipype.interface INFO:
stderr 2020-11-13T09:06:46.306470:++ Input dataset is in short format, but output will be in float format
201113-09:06:46,306 nipype.interface INFO:
stderr 2020-11-13T09:06:46.306642:++ ignoring first 0 time points, using last 69
201113-09:06:46,306 nipype.interface INFO:
stderr 2020-11-13T09:06:46.306810:++ using 69 time points => -corder 2
201113-09:06:46,307 nipype.interface INFO:
stderr 2020-11-13T09:06:46.306993:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/func_despiked_0/sub-181_ses-2_task-vigilance_run-1_bold_calc.nii.gz
201113-09:06:46,616 nipype.interface INFO:
stderr 2020-11-13T09:06:46.616663:++ 38879 voxels in the automask [out of 139264 in dataset]
201113-09:06:46,622 nipype.interface INFO:
stderr 2020-11-13T09:06:46.622183:++ 65811 voxels in the dilated automask [out of 139264 in dataset]
201113-09:06:46,628 nipype.interface INFO:
stderr 2020-11-13T09:06:46.628689:++ Procesing time series with OLD model fit algorithm
201113-09:06:46,628 nipype.interface INFO:
stderr 2020-11-13T09:06:46.628924:++ smash edit thresholds: 3.1 .. 5.0 MADs
201113-09:06:46,629 nipype.interface INFO:
stderr 2020-11-13T09:06:46.629120: + [ 3.457% .. 0.072% of normal distribution]
201113-09:06:46,629 nipype.interface INFO:
stderr 2020-11-13T09:06:46.629294: + [ 8.839% .. 3.125% of Laplace distribution]
201113-09:06:46,629 nipype.interface INFO:
stderr 2020-11-13T09:06:46.629452:++ start OpenMP thread #0
201113-09:06:48,660 nipype.interface INFO:
stderr 2020-11-13T09:06:48.660171:.............................
201113-09:06:48,660 nipype.interface INFO:
stderr 2020-11-13T09:06:48.660759:++ Elapsed despike time = 2s 31ms
201113-09:06:48,660 nipype.interface INFO:
stderr 2020-11-13T09:06:48.660914:
201113-09:06:48,661 nipype.interface INFO:
stderr 2020-11-13T09:06:48.661562:++ FINAL: 4540959 data points, 330359 edits [7.275%], 44799 big edits [0.987%]
201113-09:06:51,208 nipype.interface INFO:
stderr 2020-11-13T09:06:51.208166:++ Output dataset ./sub-181_ses-2_task-vigilance_run-1_bold_calc_despike.nii.gz
201113-09:06:51,456 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_despiked_0".
201113-09:06:51,458 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-1/slice_timing".
201113-09:06:51,467 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:06:51,468 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-1/slice_timing/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike.nii.gz
201113-09:06:51,682 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:06:51,728 nipype.interface INFO:
stderr 2020-11-13T09:06:51.728787:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:06:51,731 nipype.interface INFO:
stderr 2020-11-13T09:06:51.731684:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:06:51,731 nipype.interface INFO:
stderr 2020-11-13T09:06:51.731684: such as /outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-1/slice_timing/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike.nii.gz,
201113-09:06:51,731 nipype.interface INFO:
stderr 2020-11-13T09:06:51.731684: or viewing/combining it with volumes of differing obliquity,
201113-09:06:51,732 nipype.interface INFO:
stderr 2020-11-13T09:06:51.731684: you should consider running:
201113-09:06:51,732 nipype.interface INFO:
stderr 2020-11-13T09:06:51.731684: 3dWarp -deoblique
201113-09:06:51,732 nipype.interface INFO:
stderr 2020-11-13T09:06:51.731684: on this and other oblique datasets in the same session.
201113-09:06:51,732 nipype.interface INFO:
stderr 2020-11-13T09:06:51.731684: See 3dWarp -help for details.
201113-09:06:51,732 nipype.interface INFO:
stderr 2020-11-13T09:06:51.732513:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-1/slice_timing/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike.nii.gz is 14.900002 degrees from plumb.
201113-09:06:54,622 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_slice_timing_correction_0.slice_timing".
201113-09:06:54,624 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique".
201113-09:06:54,665 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift.nii.gz
201113-09:06:54,930 nipype.interface INFO:
stderr 2020-11-13T09:06:54.930704:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:06:54,931 nipype.interface INFO:
stderr 2020-11-13T09:06:54.931225:++ Authored by: RW Cox
201113-09:06:54,943 nipype.interface INFO:
stderr 2020-11-13T09:06:54.943188:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift.nii.gz
201113-09:06:54,944 nipype.interface INFO:
stderr 2020-11-13T09:06:54.944345: + deoblique
201113-09:06:54,944 nipype.interface INFO:
stderr 2020-11-13T09:06:54.944636: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201113-09:06:56,246 nipype.interface INFO:
stderr 2020-11-13T09:06:56.246785:++ 3drefit processed 1 datasets
201113-09:06:56,494 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:06:56,496 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_reorient".
201113-09:06:56,504 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_reorient/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift.nii.gz
201113-09:06:58,375 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:06:58,376 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_RPI".
201113-09:06:58,384 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_RPI/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-09:06:58,647 nipype.interface INFO:
stderr 2020-11-13T09:06:58.647739:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:06:58,648 nipype.interface INFO:
stderr 2020-11-13T09:06:58.648526:++ Authored by: KR Hammett & RW Cox
201113-09:06:58,999 nipype.interface INFO:
stderr 2020-11-13T09:06:58.999007:++ Output dataset ./sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201113-09:06:59,210 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:06:59,212 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_generate_ref".
201113-09:06:59,220 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_RPI/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_generate_ref/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-09:06:59,474 nipype.interface INFO:
stderr 2020-11-13T09:06:59.474032:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:06:59,474 nipype.interface INFO:
stderr 2020-11-13T09:06:59.474507:++ Authored by: RW Cox
201113-09:06:59,482 nipype.interface INFO:
stderr 2020-11-13T09:06:59.482051:++ Coarse del was 10, replaced with 3
201113-09:07:59,183 nipype.interface INFO:
stderr 2020-11-13T09:07:59.183137:++ Max displacement in automask = 0.42 (mm) at sub-brick 68
201113-09:07:59,183 nipype.interface INFO:
stderr 2020-11-13T09:07:59.183810:++ Max delta displ in automask = 0.29 (mm) at sub-brick 37
201113-09:08:01,943 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:08:01,945 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_motion".
201113-09:08:01,953 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_motion/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201113-09:08:02,209 nipype.interface INFO:
stderr 2020-11-13T09:08:02.209848:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:08:02,210 nipype.interface INFO:
stderr 2020-11-13T09:08:02.210293:++ Authored by: KR Hammett & RW Cox
201113-09:08:02,659 nipype.interface INFO:
stderr 2020-11-13T09:08:02.659628:++ Output dataset ./sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201113-09:08:02,880 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:08:02,896 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_motion_correct_mcflirt".
201113-09:08:02,906 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_reorient/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_motion_correct_mcflirt/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_motion/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:08:14,952 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:08:14,959 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/sinker_0_motion_correct".
201113-09:08:14,969 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:08:15,201 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_motion_correct".
201113-09:08:15,203 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_mean_skull".
201113-09:08:15,210 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_mean_skull/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201113-09:08:15,459 nipype.interface INFO:
stderr 2020-11-13T09:08:15.459508:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:08:15,459 nipype.interface INFO:
stderr 2020-11-13T09:08:15.459882:++ Authored by: KR Hammett & RW Cox
201113-09:08:15,830 nipype.interface INFO:
stderr 2020-11-13T09:08:15.830557:++ Output dataset ./sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201113-09:08:16,39 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:08:16,41 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass".
201113-09:08:16,47 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_mean_skull/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:08:17,950 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:08:17,952 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_dilate".
201113-09:08:17,959 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_dilate/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:08:18,685 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:08:18,686 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_mask".
201113-09:08:18,693 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_dilate/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_mask/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:08:19,199 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:08:19,201 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/unifize".
201113-09:08:19,208 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/unifize/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:08:19,468 nipype.interface INFO:
stderr 2020-11-13T09:08:19.468523:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:09:41,207 nipype.interface INFO:
stderr 2020-11-13T09:09:41.206898: + Pre-processing: IAV..UW[s4677]Im
201113-09:09:41,223 nipype.interface INFO:
stderr 2020-11-13T09:09:41.223367:++ Output dataset ./uni.nii.gz
201113-09:09:41,223 nipype.interface INFO:
stderr 2020-11-13T09:09:41.223789:++ ===== Elapsed = 81.8 sec
201113-09:09:41,474 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:09:41,476 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass".
201113-09:09:41,484 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:09:41,747 nipype.interface INFO:
stderr 2020-11-13T09:09:41.747498:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:09:41,748 nipype.interface INFO:
stderr 2020-11-13T09:09:41.748295:++ Authored by: Emperor Zhark
201113-09:09:41,751 nipype.interface INFO:
stderr 2020-11-13T09:09:41.751011:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:09:41,756 nipype.interface INFO:
stderr 2020-11-13T09:09:41.756229:++ Forming automask
201113-09:09:41,758 nipype.interface INFO:
stderr 2020-11-13T09:09:41.758275: + Fixed clip level = 404.570007
201113-09:09:41,761 nipype.interface INFO:
stderr 2020-11-13T09:09:41.761716: + Used gradual clip level = 368.210846 .. 482.772034
201113-09:09:41,762 nipype.interface INFO:
stderr 2020-11-13T09:09:41.762036: + Number voxels above clip level = 34263
201113-09:09:41,762 nipype.interface INFO:
stderr 2020-11-13T09:09:41.762206: + Clustering voxels ...
201113-09:09:41,763 nipype.interface INFO:
stderr 2020-11-13T09:09:41.763441: + Largest cluster has 34262 voxels
201113-09:09:41,764 nipype.interface INFO:
stderr 2020-11-13T09:09:41.764886: + Clustering voxels ...
201113-09:09:41,766 nipype.interface INFO:
stderr 2020-11-13T09:09:41.766128: + Largest cluster has 33611 voxels
201113-09:09:41,769 nipype.interface INFO:
stderr 2020-11-13T09:09:41.769798: + Filled 899 voxels in small holes; now have 34510 voxels
201113-09:09:41,774 nipype.interface INFO:
stderr 2020-11-13T09:09:41.774119: + Filled 11 voxels in large holes; now have 34521 voxels
201113-09:09:41,775 nipype.interface INFO:
stderr 2020-11-13T09:09:41.775582: + Clustering voxels ...
201113-09:09:41,776 nipype.interface INFO:
stderr 2020-11-13T09:09:41.776755: + Largest cluster has 34517 voxels
201113-09:09:41,777 nipype.interface INFO:
stderr 2020-11-13T09:09:41.777005: + Clustering non-brain voxels ...
201113-09:09:41,777 nipype.interface INFO:
stderr 2020-11-13T09:09:41.777151: + Clustering voxels ...
201113-09:09:41,780 nipype.interface INFO:
stderr 2020-11-13T09:09:41.780302: + Largest cluster has 104661 voxels
201113-09:09:41,780 nipype.interface INFO:
stderr 2020-11-13T09:09:41.780658: + Mask now has 34603 voxels
201113-09:09:41,780 nipype.interface INFO:
stderr 2020-11-13T09:09:41.780813:++ Dilating automask
201113-09:09:41,794 nipype.interface INFO:
stderr 2020-11-13T09:09:41.794074: + Clustering voxels ...
201113-09:09:41,796 nipype.interface INFO:
stderr 2020-11-13T09:09:41.796700: + Largest cluster has 97883 voxels
201113-09:09:41,797 nipype.interface INFO:
stderr 2020-11-13T09:09:41.797054:++ 41381 voxels in the mask [out of 139264: 29.71%]
201113-09:09:41,797 nipype.interface INFO:
stderr 2020-11-13T09:09:41.797230:++ first 10 x-planes are zero [from R]
201113-09:09:41,797 nipype.interface INFO:
stderr 2020-11-13T09:09:41.797388:++ last 7 x-planes are zero [from L]
201113-09:09:41,797 nipype.interface INFO:
stderr 2020-11-13T09:09:41.797531:++ first 3 y-planes are zero [from P]
201113-09:09:41,797 nipype.interface INFO:
stderr 2020-11-13T09:09:41.797676:++ last 3 y-planes are zero [from A]
201113-09:09:41,797 nipype.interface INFO:
stderr 2020-11-13T09:09:41.797810:++ first 0 z-planes are zero [from I]
201113-09:09:41,797 nipype.interface INFO:
stderr 2020-11-13T09:09:41.797972:++ last 2 z-planes are zero [from S]
201113-09:09:41,802 nipype.interface INFO:
stderr 2020-11-13T09:09:41.802608:++ Output dataset ./uni_mask.nii.gz
201113-09:09:41,802 nipype.interface INFO:
stderr 2020-11-13T09:09:41.802882:++ applying mask to original data
201113-09:09:41,803 nipype.interface INFO:
stderr 2020-11-13T09:09:41.803728:++ Writing masked data
201113-09:09:41,819 nipype.interface INFO:
stderr 2020-11-13T09:09:41.819280:++ Output dataset ./uni_masked.nii.gz
201113-09:09:41,819 nipype.interface INFO:
stderr 2020-11-13T09:09:41.819829:++ CPU time = 0.000000 sec
201113-09:09:42,44 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:09:42,46 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/combine_masks".
201113-09:09:42,53 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/combine_masks/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:09:42,542 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:09:42,543 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201113-09:09:42,548 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-09:09:42,784 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201113-09:09:42,786 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201113-09:09:42,793 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:09:43,53 nipype.interface INFO:
stderr 2020-11-13T09:09:43.053781:++ no -frac option: defaulting to -union
201113-09:09:43,54 nipype.interface INFO:
stderr 2020-11-13T09:09:43.054290:++ processing 1 input dataset(s), NN=2...
201113-09:09:43,54 nipype.interface INFO:
stderr 2020-11-13T09:09:43.054463:++ padding all datasets by 0 (for dilations)
201113-09:09:43,59 nipype.interface INFO:
stderr 2020-11-13T09:09:43.059152:++ frac 0 over 1 volumes gives min count 0
201113-09:09:43,59 nipype.interface INFO:
stderr 2020-11-13T09:09:43.059681:++ voxel limits: 0 clipped, 41273 survived, 97991 were zero
201113-09:09:43,59 nipype.interface INFO:
stderr 2020-11-13T09:09:43.059850:++ writing result sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201113-09:09:43,64 nipype.interface INFO:
stderr 2020-11-13T09:09:43.064357:++ Output dataset ./sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201113-09:09:43,286 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201113-09:09:43,288 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/sinker_0_functional_brain_mask".
201113-09:09:43,297 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:09:43,533 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_functional_brain_mask".
201113-09:09:43,538 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/functional_brain_mask_derivative_0".
201113-09:09:43,544 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201113-09:09:43,761 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201113-09:09:43,767 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:09:44,322 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201113-09:09:44,341 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.functional_brain_mask_derivative_0".
201113-09:09:44,343 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_extract_brain".
201113-09:09:44,350 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_motion_correct_mcflirt/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/combine_masks/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:09:44,606 nipype.interface INFO:
stderr 2020-11-13T09:09:44.606636:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:09:44,607 nipype.interface INFO:
stderr 2020-11-13T09:09:44.607155:++ Authored by: A cast of thousands
201113-09:09:46,351 nipype.interface INFO:
stderr 2020-11-13T09:09:46.351066:++ Output dataset ./sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:09:46,592 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:09:46,594 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_normalize".
201113-09:09:46,599 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_extract_brain/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_normalize/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201113-09:09:48,113 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:09:48,115 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201113-09:09:48,121 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_normalize/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:09:48,844 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201113-09:09:48,846 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201113-09:09:48,852 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:09:49,109 nipype.interface INFO:
stderr 2020-11-13T09:09:49.109259:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:09:49,109 nipype.interface INFO:
stderr 2020-11-13T09:09:49.109684:++ Authored by: KR Hammett & RW Cox
201113-09:09:49,436 nipype.interface INFO:
stderr 2020-11-13T09:09:49.436693:++ Output dataset ./sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:09:49,666 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.functional_mean".
201113-09:09:49,668 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-181_ses-2/qc_snr_0/_scan_vigilance_run-1/std_dev".
201113-09:09:49,676 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/combine_masks/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/qc_snr_0/_scan_vigilance_run-1/std_dev/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:09:49,939 nipype.interface INFO:
stderr 2020-11-13T09:09:49.939615:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:09:49,940 nipype.interface INFO:
stderr 2020-11-13T09:09:49.940109:++ Authored by: KR Hammett & RW Cox
201113-09:09:50,242 nipype.interface INFO:
stderr 2020-11-13T09:09:50.242862:++ Output dataset ./sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:09:50,464 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.qc_snr_0.std_dev".
201113-09:09:50,465 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/sinker_0_functional_preprocessed".
201113-09:09:50,473 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:09:50,709 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed".
201113-09:09:50,711 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mask_normalize".
201113-09:09:50,719 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_normalize/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mask_normalize/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:09:51,562 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:09:51,563 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/sinker_0_functional_preprocessed_mask".
201113-09:09:51,570 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:09:51,802 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed_mask".
201113-09:09:51,803 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mean".
201113-09:09:51,810 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mean/sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:09:52,60 nipype.interface INFO:
stderr 2020-11-13T09:09:52.060223:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:09:52,60 nipype.interface INFO:
stderr 2020-11-13T09:09:52.060602:++ Authored by: KR Hammett & RW Cox
201113-09:09:52,368 nipype.interface INFO:
stderr 2020-11-13T09:09:52.368391:++ Output dataset ./sub-181_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201113-09:09:52,572 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:09:52,574 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/sinker_0_mean_functional".
201113-09:09:52,581 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:09:52,812 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_mean_functional".
201113-09:09:52,814 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/norm_motion_params".
201113-09:09:52,819 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:09:53,53 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:09:53,54 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/sinker_0_slice_time_corrected".
201113-09:09:53,61 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:09:53,293 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_slice_time_corrected".
201113-09:09:53,295 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_vigilance_run-1/sinker_0_raw_functional".
201113-09:09:53,303 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:09:53,618 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_raw_functional".
201113-09:09:53,620 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_vigilance_run-1/check_func_scan".
201113-09:09:53,652 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201113-09:09:53,886 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.check_func_scan".
201113-09:09:53,897 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_tgng_run-2/select_scan_params".
201113-09:09:53,927 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:09:54,167 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.select_scan_params".
201113-09:09:54,178 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_tgng_run-2/s3_scan_params".
201113-09:09:54,186 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:09:54,424 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.s3_scan_params".
201113-09:09:54,427 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/scan_params_0".
201113-09:09:54,437 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-09:09:54,683 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.scan_params_0".
201113-09:09:54,685 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_tgng_run-2/selectrest".
201113-09:09:54,722 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-09:09:54,961 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.selectrest".
201113-09:09:54,972 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_tgng_run-2/check_for_s3".
201113-09:09:54,978 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-09:09:55,258 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.check_for_s3".
201113-09:09:55,260 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-181_ses-2/edit_func_0/_scan_tgng_run-2/func_get_idx".
201113-09:09:55,266 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-09:09:55,510 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.edit_func_0.func_get_idx".
201113-09:09:55,511 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-181_ses-2/edit_func_0/_scan_tgng_run-2/func_drop_trs".
201113-09:09:55,518 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-181/ses-2/func/sub-181_ses-2_task-tgng_run-2_bold.nii.gz[0..129] -expr "a" -prefix sub-181_ses-2_task-tgng_run-2_bold_calc.nii.gz
201113-09:09:55,789 nipype.interface INFO:
stderr 2020-11-13T09:09:55.789565:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:09:55,790 nipype.interface INFO:
stderr 2020-11-13T09:09:55.790170:++ Authored by: A cast of thousands
201113-09:10:01,445 nipype.interface INFO:
stderr 2020-11-13T09:10:01.445319:++ Output dataset ./sub-181_ses-2_task-tgng_run-2_bold_calc.nii.gz
201113-09:10:01,681 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.edit_func_0.func_drop_trs".
201113-09:10:01,682 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique".
201113-09:10:01,732 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-181_ses-2_task-tgng_run-2_bold_calc.nii.gz
201113-09:10:01,990 nipype.interface INFO:
stderr 2020-11-13T09:10:01.989991:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:10:01,990 nipype.interface INFO:
stderr 2020-11-13T09:10:01.990452:++ Authored by: RW Cox
201113-09:10:01,993 nipype.interface INFO:
stderr 2020-11-13T09:10:01.993350:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-181_ses-2_task-tgng_run-2_bold_calc.nii.gz
201113-09:10:01,994 nipype.interface INFO:
stderr 2020-11-13T09:10:01.993980: + deoblique
201113-09:10:01,994 nipype.interface INFO:
stderr 2020-11-13T09:10:01.994175: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-181_ses-2_task-tgng_run-2_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-181_ses-2_task-tgng_run-2_bold_calc.nii.gz in NIFTI storage)
201113-09:10:05,896 nipype.interface INFO:
stderr 2020-11-13T09:10:05.896474:++ 3drefit processed 1 datasets
201113-09:10:06,119 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:10:06,121 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient".
201113-09:10:06,129 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-2_task-tgng_run-2_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-181_ses-2_task-tgng_run-2_bold_calc.nii.gz
201113-09:10:10,641 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:10:10,643 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI".
201113-09:10:10,648 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-tgng_run-2_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-181_ses-2_task-tgng_run-2_bold_calc_resample.nii.gz
201113-09:10:10,903 nipype.interface INFO:
stderr 2020-11-13T09:10:10.903194:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:10:10,903 nipype.interface INFO:
stderr 2020-11-13T09:10:10.903636:++ Authored by: KR Hammett & RW Cox
201113-09:10:11,399 nipype.interface INFO:
stderr 2020-11-13T09:10:11.398937:++ Output dataset ./sub-181_ses-2_task-tgng_run-2_bold_calc_resample_tstat.nii.gz
201113-09:10:11,609 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:10:11,610 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref".
201113-09:10:11,617 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-2_task-tgng_run-2_bold_calc_resample.1D -1Dmatrix_save sub-181_ses-2_task-tgng_run-2_bold_calc_resample.aff12.1D -prefix sub-181_ses-2_task-tgng_run-2_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-181_ses-2_task-tgng_run-2_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-2_task-tgng_run-2_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref/sub-181_ses-2_task-tgng_run-2_bold_calc_resample.nii.gz
201113-09:10:11,875 nipype.interface INFO:
stderr 2020-11-13T09:10:11.875001:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:10:11,875 nipype.interface INFO:
stderr 2020-11-13T09:10:11.875451:++ Authored by: RW Cox
201113-09:10:11,885 nipype.interface INFO:
stderr 2020-11-13T09:10:11.885778:++ Coarse del was 10, replaced with 3
201113-09:12:03,121 nipype.interface INFO:
stderr 2020-11-13T09:12:03.121544:++ Max displacement in automask = 0.70 (mm) at sub-brick 2
201113-09:12:03,122 nipype.interface INFO:
stderr 2020-11-13T09:12:03.122134:++ Max delta displ in automask = 0.11 (mm) at sub-brick 100
201113-09:12:06,797 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:12:06,824 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion".
201113-09:12:06,832 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-tgng_run-2_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-181_ses-2_task-tgng_run-2_bold_calc_resample_volreg.nii.gz
201113-09:12:07,98 nipype.interface INFO:
stderr 2020-11-13T09:12:07.098784:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:12:07,99 nipype.interface INFO:
stderr 2020-11-13T09:12:07.099616:++ Authored by: KR Hammett & RW Cox
201113-09:12:07,597 nipype.interface INFO:
stderr 2020-11-13T09:12:07.597287:++ Output dataset ./sub-181_ses-2_task-tgng_run-2_bold_calc_resample_volreg_tstat.nii.gz
201113-09:12:07,822 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:12:07,823 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt".
201113-09:12:07,830 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-181_ses-2_task-tgng_run-2_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-181_ses-2_task-tgng_run-2_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:12:31,618 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:12:31,627 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calculate_FDJ".
201113-09:12:31,635 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201113-09:12:31,871 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201113-09:12:31,872 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/sinker_0_frame_wise_displacement_jenkinson".
201113-09:12:31,879 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:12:32,115 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201113-09:12:32,117 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/sinker_0_max_displacement".
201113-09:12:32,126 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:12:32,363 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_max_displacement".
201113-09:12:32,364 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/sinker_0_coordinate_transformation".
201113-09:12:32,386 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:12:32,659 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_coordinate_transformation".
201113-09:12:32,671 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull".
201113-09:12:32,680 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf.nii.gz
201113-09:12:32,964 nipype.interface INFO:
stderr 2020-11-13T09:12:32.963937:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:12:32,964 nipype.interface INFO:
stderr 2020-11-13T09:12:32.964559:++ Authored by: KR Hammett & RW Cox
201113-09:12:33,505 nipype.interface INFO:
stderr 2020-11-13T09:12:33.505713:++ Output dataset ./sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat.nii.gz
201113-09:12:33,728 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:12:33,730 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass".
201113-09:12:33,736 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:12:35,691 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:12:35,693 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate".
201113-09:12:35,699 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:12:36,454 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:12:36,455 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask".
201113-09:12:36,461 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask/sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:12:36,965 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:12:36,967 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize".
201113-09:12:36,974 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize/sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:12:37,238 nipype.interface INFO:
stderr 2020-11-13T09:12:37.238639:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:13:58,837 nipype.interface INFO:
stderr 2020-11-13T09:13:58.836920: + Pre-processing: IAV..UW[s4639]Im
201113-09:13:58,854 nipype.interface INFO:
stderr 2020-11-13T09:13:58.853987:++ Output dataset ./uni.nii.gz
201113-09:13:58,854 nipype.interface INFO:
stderr 2020-11-13T09:13:58.854502:++ ===== Elapsed = 81.6 sec
201113-09:13:59,107 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:13:59,139 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass".
201113-09:13:59,148 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201113-09:13:59,419 nipype.interface INFO:
stderr 2020-11-13T09:13:59.419187:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:13:59,419 nipype.interface INFO:
stderr 2020-11-13T09:13:59.419719:++ Authored by: Emperor Zhark
201113-09:13:59,422 nipype.interface INFO:
stderr 2020-11-13T09:13:59.422854:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201113-09:13:59,429 nipype.interface INFO:
stderr 2020-11-13T09:13:59.428976:++ Forming automask
201113-09:13:59,430 nipype.interface INFO:
stderr 2020-11-13T09:13:59.430957: + Fixed clip level = 403.758423
201113-09:13:59,435 nipype.interface INFO:
stderr 2020-11-13T09:13:59.435302: + Used gradual clip level = 369.678467 .. 483.089996
201113-09:13:59,435 nipype.interface INFO:
stderr 2020-11-13T09:13:59.435680: + Number voxels above clip level = 34315
201113-09:13:59,435 nipype.interface INFO:
stderr 2020-11-13T09:13:59.435870: + Clustering voxels ...
201113-09:13:59,437 nipype.interface INFO:
stderr 2020-11-13T09:13:59.437622: + Largest cluster has 34309 voxels
201113-09:13:59,439 nipype.interface INFO:
stderr 2020-11-13T09:13:59.439120: + Clustering voxels ...
201113-09:13:59,440 nipype.interface INFO:
stderr 2020-11-13T09:13:59.440351: + Largest cluster has 33636 voxels
201113-09:13:59,443 nipype.interface INFO:
stderr 2020-11-13T09:13:59.443744: + Filled 908 voxels in small holes; now have 34544 voxels
201113-09:13:59,448 nipype.interface INFO:
stderr 2020-11-13T09:13:59.448096: + Filled 11 voxels in large holes; now have 34555 voxels
201113-09:13:59,449 nipype.interface INFO:
stderr 2020-11-13T09:13:59.449570: + Clustering voxels ...
201113-09:13:59,450 nipype.interface INFO:
stderr 2020-11-13T09:13:59.450752: + Largest cluster has 34550 voxels
201113-09:13:59,451 nipype.interface INFO:
stderr 2020-11-13T09:13:59.450994: + Clustering non-brain voxels ...
201113-09:13:59,451 nipype.interface INFO:
stderr 2020-11-13T09:13:59.451139: + Clustering voxels ...
201113-09:13:59,454 nipype.interface INFO:
stderr 2020-11-13T09:13:59.454064: + Largest cluster has 104617 voxels
201113-09:13:59,454 nipype.interface INFO:
stderr 2020-11-13T09:13:59.454414: + Mask now has 34647 voxels
201113-09:13:59,454 nipype.interface INFO:
stderr 2020-11-13T09:13:59.454573:++ Dilating automask
201113-09:13:59,463 nipype.interface INFO:
stderr 2020-11-13T09:13:59.463008: + Clustering voxels ...
201113-09:13:59,465 nipype.interface INFO:
stderr 2020-11-13T09:13:59.465684: + Largest cluster has 97797 voxels
201113-09:13:59,466 nipype.interface INFO:
stderr 2020-11-13T09:13:59.466035:++ 41467 voxels in the mask [out of 139264: 29.78%]
201113-09:13:59,466 nipype.interface INFO:
stderr 2020-11-13T09:13:59.466210:++ first 10 x-planes are zero [from R]
201113-09:13:59,466 nipype.interface INFO:
stderr 2020-11-13T09:13:59.466371:++ last 7 x-planes are zero [from L]
201113-09:13:59,466 nipype.interface INFO:
stderr 2020-11-13T09:13:59.466512:++ first 3 y-planes are zero [from P]
201113-09:13:59,466 nipype.interface INFO:
stderr 2020-11-13T09:13:59.466653:++ last 3 y-planes are zero [from A]
201113-09:13:59,466 nipype.interface INFO:
stderr 2020-11-13T09:13:59.466787:++ first 0 z-planes are zero [from I]
201113-09:13:59,466 nipype.interface INFO:
stderr 2020-11-13T09:13:59.466924:++ last 2 z-planes are zero [from S]
201113-09:13:59,471 nipype.interface INFO:
stderr 2020-11-13T09:13:59.471698:++ Output dataset ./uni_mask.nii.gz
201113-09:13:59,472 nipype.interface INFO:
stderr 2020-11-13T09:13:59.471989:++ applying mask to original data
201113-09:13:59,472 nipype.interface INFO:
stderr 2020-11-13T09:13:59.472869:++ Writing masked data
201113-09:13:59,488 nipype.interface INFO:
stderr 2020-11-13T09:13:59.488447:++ Output dataset ./uni_masked.nii.gz
201113-09:13:59,489 nipype.interface INFO:
stderr 2020-11-13T09:13:59.488994:++ CPU time = 0.000000 sec
201113-09:13:59,713 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:13:59,715 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks".
201113-09:13:59,722 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:14:00,201 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:14:00,203 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/cal_DVARS".
201113-09:14:00,211 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201113-09:14:00,933 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201113-09:14:00,934 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain".
201113-09:14:00,941 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-09:14:01,192 nipype.interface INFO:
stderr 2020-11-13T09:14:01.192605:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:14:01,193 nipype.interface INFO:
stderr 2020-11-13T09:14:01.193074:++ Authored by: A cast of thousands
201113-09:14:04,131 nipype.interface INFO:
stderr 2020-11-13T09:14:04.131637:++ Output dataset ./sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-09:14:04,373 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:14:04,375 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize".
201113-09:14:04,380 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain/sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201113-09:14:06,731 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:14:06,733 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize".
201113-09:14:06,740 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize/sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:14:07,894 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:14:07,895 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean".
201113-09:14:07,903 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-09:14:08,178 nipype.interface INFO:
stderr 2020-11-13T09:14:08.178252:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:14:08,178 nipype.interface INFO:
stderr 2020-11-13T09:14:08.178874:++ Authored by: KR Hammett & RW Cox
201113-09:14:08,503 nipype.interface INFO:
stderr 2020-11-13T09:14:08.503559:++ Output dataset ./sub-181_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz
201113-09:14:08,758 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:14:08,760 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/norm_motion_params".
201113-09:14:08,767 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:14:09,6 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:14:09,8 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-2/qc_motion_0/_scan_tgng_run-2/motion_plot".
201113-09:14:09,14 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201113-09:14:09,470 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.qc_motion_0.motion_plot".
201113-09:14:09,472 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/sinker_0_qc___movement_trans_plot".
201113-09:14:09,480 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:14:09,694 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc___movement_trans_plot/_scan_tgng_run-2/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc/movement_trans_plot/_scan_tgng_run-2/motion_trans_plot.png
201113-09:14:09,716 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_trans_plot".
201113-09:14:09,718 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/sinker_0_qc___movement_rot_plot".
201113-09:14:09,726 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:14:09,940 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc___movement_rot_plot/_scan_tgng_run-2/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc/movement_rot_plot/_scan_tgng_run-2/motion_rot_plot.png
201113-09:14:09,963 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_rot_plot".
201113-09:14:09,965 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calc_motion_parameters".
201113-09:14:09,973 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:14:10,210 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201113-09:14:10,237 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/sinker_0_motion_params".
201113-09:14:10,244 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:14:10,476 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_motion_params".
201113-09:14:10,478 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calculate_FD".
201113-09:14:10,483 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201113-09:14:10,714 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201113-09:14:10,715 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/sinker_0_frame_wise_displacement_power".
201113-09:14:10,723 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:14:10,955 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_power".
201113-09:14:10,956 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calc_power_parameters".
201113-09:14:10,962 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:14:11,196 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201113-09:14:11,197 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/sinker_0_power_params".
201113-09:14:11,205 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:14:11,438 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_power_params".
201113-09:14:11,440 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/sinker_0_movement_parameters".
201113-09:14:11,447 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:14:11,680 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_movement_parameters".
201113-09:14:11,682 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/func_despiked_0".
201113-09:14:11,689 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-181_ses-2_task-tgng_run-2_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/func_despiked_0/sub-181_ses-2_task-tgng_run-2_bold_calc.nii.gz
201113-09:14:11,951 nipype.interface INFO:
stderr 2020-11-13T09:14:11.950995:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:14:11,951 nipype.interface INFO:
stderr 2020-11-13T09:14:11.951615:++ Authored by: RW Cox
201113-09:14:11,954 nipype.interface INFO:
stderr 2020-11-13T09:14:11.954698:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:14:11,954 nipype.interface INFO:
stderr 2020-11-13T09:14:11.954698: such as /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/func_despiked_0/sub-181_ses-2_task-tgng_run-2_bold_calc.nii.gz,
201113-09:14:11,955 nipype.interface INFO:
stderr 2020-11-13T09:14:11.954698: or viewing/combining it with volumes of differing obliquity,
201113-09:14:11,955 nipype.interface INFO:
stderr 2020-11-13T09:14:11.954698: you should consider running:
201113-09:14:11,955 nipype.interface INFO:
stderr 2020-11-13T09:14:11.954698: 3dWarp -deoblique
201113-09:14:11,955 nipype.interface INFO:
stderr 2020-11-13T09:14:11.954698: on this and other oblique datasets in the same session.
201113-09:14:11,955 nipype.interface INFO:
stderr 2020-11-13T09:14:11.954698: See 3dWarp -help for details.
201113-09:14:11,955 nipype.interface INFO:
stderr 2020-11-13T09:14:11.955776:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/func_despiked_0/sub-181_ses-2_task-tgng_run-2_bold_calc.nii.gz is 14.900002 degrees from plumb.
201113-09:14:11,956 nipype.interface INFO:
stderr 2020-11-13T09:14:11.956011:++ Input dataset is in short format, but output will be in float format
201113-09:14:11,956 nipype.interface INFO:
stderr 2020-11-13T09:14:11.956215:++ ignoring first 0 time points, using last 130
201113-09:14:11,956 nipype.interface INFO:
stderr 2020-11-13T09:14:11.956423:++ using 130 time points => -corder 4
201113-09:14:11,956 nipype.interface INFO:
stderr 2020-11-13T09:14:11.956612:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/func_despiked_0/sub-181_ses-2_task-tgng_run-2_bold_calc.nii.gz
201113-09:14:12,451 nipype.interface INFO:
stderr 2020-11-13T09:14:12.451443:++ 38976 voxels in the automask [out of 139264 in dataset]
201113-09:14:12,456 nipype.interface INFO:
stderr 2020-11-13T09:14:12.456914:++ 65963 voxels in the dilated automask [out of 139264 in dataset]
201113-09:14:12,468 nipype.interface INFO:
stderr 2020-11-13T09:14:12.468550:++ Procesing time series with OLD model fit algorithm
201113-09:14:12,468 nipype.interface INFO:
stderr 2020-11-13T09:14:12.468849:++ smash edit thresholds: 3.1 .. 5.0 MADs
201113-09:14:12,469 nipype.interface INFO:
stderr 2020-11-13T09:14:12.469047: + [ 3.457% .. 0.072% of normal distribution]
201113-09:14:12,469 nipype.interface INFO:
stderr 2020-11-13T09:14:12.469208: + [ 8.839% .. 3.125% of Laplace distribution]
201113-09:14:12,469 nipype.interface INFO:
stderr 2020-11-13T09:14:12.469394:++ start OpenMP thread #0
201113-09:14:18,855 nipype.interface INFO:
stderr 2020-11-13T09:14:18.855576:.............................
201113-09:14:18,855 nipype.interface INFO:
stderr 2020-11-13T09:14:18.855969:++ Elapsed despike time = 6s 387ms
201113-09:14:18,856 nipype.interface INFO:
stderr 2020-11-13T09:14:18.856120:
201113-09:14:18,857 nipype.interface INFO:
stderr 2020-11-13T09:14:18.856985:++ FINAL: 8575190 data points, 546209 edits [6.370%], 54440 big edits [0.635%]
201113-09:14:23,706 nipype.interface INFO:
stderr 2020-11-13T09:14:23.705933:++ Output dataset ./sub-181_ses-2_task-tgng_run-2_bold_calc_despike.nii.gz
201113-09:14:23,941 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_despiked_0".
201113-09:14:23,943 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing".
201113-09:14:23,952 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:14:23,953 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing/sub-181_ses-2_task-tgng_run-2_bold_calc_despike.nii.gz
201113-09:14:24,164 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:14:24,220 nipype.interface INFO:
stderr 2020-11-13T09:14:24.219881:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:14:24,224 nipype.interface INFO:
stderr 2020-11-13T09:14:24.223915:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:14:24,224 nipype.interface INFO:
stderr 2020-11-13T09:14:24.223915: such as /outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing/sub-181_ses-2_task-tgng_run-2_bold_calc_despike.nii.gz,
201113-09:14:24,224 nipype.interface INFO:
stderr 2020-11-13T09:14:24.223915: or viewing/combining it with volumes of differing obliquity,
201113-09:14:24,224 nipype.interface INFO:
stderr 2020-11-13T09:14:24.223915: you should consider running:
201113-09:14:24,224 nipype.interface INFO:
stderr 2020-11-13T09:14:24.223915: 3dWarp -deoblique
201113-09:14:24,224 nipype.interface INFO:
stderr 2020-11-13T09:14:24.223915: on this and other oblique datasets in the same session.
201113-09:14:24,224 nipype.interface INFO:
stderr 2020-11-13T09:14:24.223915: See 3dWarp -help for details.
201113-09:14:24,225 nipype.interface INFO:
stderr 2020-11-13T09:14:24.225105:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing/sub-181_ses-2_task-tgng_run-2_bold_calc_despike.nii.gz is 14.900002 degrees from plumb.
201113-09:14:28,922 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_slice_timing_correction_0.slice_timing".
201113-09:14:28,924 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique".
201113-09:14:28,988 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift.nii.gz
201113-09:14:29,248 nipype.interface INFO:
stderr 2020-11-13T09:14:29.248430:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:14:29,248 nipype.interface INFO:
stderr 2020-11-13T09:14:29.248970:++ Authored by: RW Cox
201113-09:14:29,261 nipype.interface INFO:
stderr 2020-11-13T09:14:29.261086:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift.nii.gz
201113-09:14:29,262 nipype.interface INFO:
stderr 2020-11-13T09:14:29.262290: + deoblique
201113-09:14:29,262 nipype.interface INFO:
stderr 2020-11-13T09:14:29.262590: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201113-09:14:31,690 nipype.interface INFO:
stderr 2020-11-13T09:14:31.690733:++ 3drefit processed 1 datasets
201113-09:14:31,902 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:14:31,904 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient".
201113-09:14:31,911 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift.nii.gz
201113-09:14:34,988 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:14:34,990 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI".
201113-09:14:34,995 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz
201113-09:14:35,246 nipype.interface INFO:
stderr 2020-11-13T09:14:35.246138:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:14:35,246 nipype.interface INFO:
stderr 2020-11-13T09:14:35.246571:++ Authored by: KR Hammett & RW Cox
201113-09:14:35,878 nipype.interface INFO:
stderr 2020-11-13T09:14:35.878791:++ Output dataset ./sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz
201113-09:14:36,113 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:14:36,114 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref".
201113-09:14:36,121 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz
201113-09:14:36,380 nipype.interface INFO:
stderr 2020-11-13T09:14:36.380616:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:14:36,381 nipype.interface INFO:
stderr 2020-11-13T09:14:36.381143:++ Authored by: RW Cox
201113-09:14:36,390 nipype.interface INFO:
stderr 2020-11-13T09:14:36.390431:++ Coarse del was 10, replaced with 3
201113-09:16:27,603 nipype.interface INFO:
stderr 2020-11-13T09:16:27.603544:++ Max displacement in automask = 0.68 (mm) at sub-brick 2
201113-09:16:27,604 nipype.interface INFO:
stderr 2020-11-13T09:16:27.604253:++ Max delta displ in automask = 0.12 (mm) at sub-brick 100
201113-09:16:32,423 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:16:32,425 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion".
201113-09:16:32,432 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz
201113-09:16:32,693 nipype.interface INFO:
stderr 2020-11-13T09:16:32.693268:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:16:32,693 nipype.interface INFO:
stderr 2020-11-13T09:16:32.693724:++ Authored by: KR Hammett & RW Cox
201113-09:16:33,515 nipype.interface INFO:
stderr 2020-11-13T09:16:33.515047:++ Output dataset ./sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201113-09:16:33,782 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:16:33,814 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt".
201113-09:16:33,821 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:16:55,756 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:16:55,766 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/sinker_0_motion_correct".
201113-09:16:55,774 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:16:56,7 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_motion_correct".
201113-09:16:56,9 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull".
201113-09:16:56,17 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz
201113-09:16:56,293 nipype.interface INFO:
stderr 2020-11-13T09:16:56.292993:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:16:56,293 nipype.interface INFO:
stderr 2020-11-13T09:16:56.293751:++ Authored by: KR Hammett & RW Cox
201113-09:16:56,964 nipype.interface INFO:
stderr 2020-11-13T09:16:56.964401:++ Output dataset ./sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201113-09:16:57,195 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:16:57,196 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass".
201113-09:16:57,202 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:16:59,131 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:16:59,133 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate".
201113-09:16:59,139 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:16:59,877 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:16:59,879 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask".
201113-09:16:59,886 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:17:00,383 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:17:00,384 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize".
201113-09:17:00,390 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:17:00,661 nipype.interface INFO:
stderr 2020-11-13T09:17:00.661309:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:18:22,396 nipype.interface INFO:
stderr 2020-11-13T09:18:22.395903: + Pre-processing: IAV..UW[s4661]Im
201113-09:18:22,412 nipype.interface INFO:
stderr 2020-11-13T09:18:22.412415:++ Output dataset ./uni.nii.gz
201113-09:18:22,412 nipype.interface INFO:
stderr 2020-11-13T09:18:22.412928:++ ===== Elapsed = 81.8 sec
201113-09:18:22,677 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:18:22,679 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass".
201113-09:18:22,687 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201113-09:18:22,956 nipype.interface INFO:
stderr 2020-11-13T09:18:22.956414:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:18:22,956 nipype.interface INFO:
stderr 2020-11-13T09:18:22.956904:++ Authored by: Emperor Zhark
201113-09:18:22,960 nipype.interface INFO:
stderr 2020-11-13T09:18:22.960388:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201113-09:18:22,967 nipype.interface INFO:
stderr 2020-11-13T09:18:22.967222:++ Forming automask
201113-09:18:22,968 nipype.interface INFO:
stderr 2020-11-13T09:18:22.968810: + Fixed clip level = 403.894928
201113-09:18:22,972 nipype.interface INFO:
stderr 2020-11-13T09:18:22.972612: + Used gradual clip level = 370.417114 .. 482.904816
201113-09:18:22,972 nipype.interface INFO:
stderr 2020-11-13T09:18:22.972873: + Number voxels above clip level = 34317
201113-09:18:22,973 nipype.interface INFO:
stderr 2020-11-13T09:18:22.973056: + Clustering voxels ...
201113-09:18:22,974 nipype.interface INFO:
stderr 2020-11-13T09:18:22.974275: + Largest cluster has 34310 voxels
201113-09:18:22,975 nipype.interface INFO:
stderr 2020-11-13T09:18:22.975720: + Clustering voxels ...
201113-09:18:22,977 nipype.interface INFO:
stderr 2020-11-13T09:18:22.977009: + Largest cluster has 33650 voxels
201113-09:18:22,980 nipype.interface INFO:
stderr 2020-11-13T09:18:22.980494: + Filled 909 voxels in small holes; now have 34559 voxels
201113-09:18:22,984 nipype.interface INFO:
stderr 2020-11-13T09:18:22.984801: + Filled 11 voxels in large holes; now have 34570 voxels
201113-09:18:22,986 nipype.interface INFO:
stderr 2020-11-13T09:18:22.986313: + Clustering voxels ...
201113-09:18:22,987 nipype.interface INFO:
stderr 2020-11-13T09:18:22.987492: + Largest cluster has 34566 voxels
201113-09:18:22,987 nipype.interface INFO:
stderr 2020-11-13T09:18:22.987728: + Clustering non-brain voxels ...
201113-09:18:22,987 nipype.interface INFO:
stderr 2020-11-13T09:18:22.987873: + Clustering voxels ...
201113-09:18:22,990 nipype.interface INFO:
stderr 2020-11-13T09:18:22.990742: + Largest cluster has 104601 voxels
201113-09:18:22,991 nipype.interface INFO:
stderr 2020-11-13T09:18:22.991091: + Mask now has 34663 voxels
201113-09:18:22,991 nipype.interface INFO:
stderr 2020-11-13T09:18:22.991256:++ Dilating automask
201113-09:18:22,999 nipype.interface INFO:
stderr 2020-11-13T09:18:22.999250: + Clustering voxels ...
201113-09:18:23,1 nipype.interface INFO:
stderr 2020-11-13T09:18:23.001900: + Largest cluster has 97798 voxels
201113-09:18:23,2 nipype.interface INFO:
stderr 2020-11-13T09:18:23.002284:++ 41466 voxels in the mask [out of 139264: 29.78%]
201113-09:18:23,2 nipype.interface INFO:
stderr 2020-11-13T09:18:23.002476:++ first 10 x-planes are zero [from R]
201113-09:18:23,2 nipype.interface INFO:
stderr 2020-11-13T09:18:23.002638:++ last 7 x-planes are zero [from L]
201113-09:18:23,2 nipype.interface INFO:
stderr 2020-11-13T09:18:23.002779:++ first 3 y-planes are zero [from P]
201113-09:18:23,2 nipype.interface INFO:
stderr 2020-11-13T09:18:23.002931:++ last 3 y-planes are zero [from A]
201113-09:18:23,3 nipype.interface INFO:
stderr 2020-11-13T09:18:23.003074:++ first 0 z-planes are zero [from I]
201113-09:18:23,3 nipype.interface INFO:
stderr 2020-11-13T09:18:23.003216:++ last 2 z-planes are zero [from S]
201113-09:18:23,8 nipype.interface INFO:
stderr 2020-11-13T09:18:23.008630:++ Output dataset ./uni_mask.nii.gz
201113-09:18:23,8 nipype.interface INFO:
stderr 2020-11-13T09:18:23.008933:++ applying mask to original data
201113-09:18:23,10 nipype.interface INFO:
stderr 2020-11-13T09:18:23.010052:++ Writing masked data
201113-09:18:23,26 nipype.interface INFO:
stderr 2020-11-13T09:18:23.026367:++ Output dataset ./uni_masked.nii.gz
201113-09:18:23,27 nipype.interface INFO:
stderr 2020-11-13T09:18:23.027219:++ CPU time = 0.000000 sec
201113-09:18:23,255 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:18:23,257 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks".
201113-09:18:23,264 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:18:23,744 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:18:23,746 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201113-09:18:23,751 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-09:18:23,983 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201113-09:18:23,984 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201113-09:18:23,991 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:18:24,247 nipype.interface INFO:
stderr 2020-11-13T09:18:24.247133:++ no -frac option: defaulting to -union
201113-09:18:24,247 nipype.interface INFO:
stderr 2020-11-13T09:18:24.247548:++ processing 1 input dataset(s), NN=2...
201113-09:18:24,247 nipype.interface INFO:
stderr 2020-11-13T09:18:24.247704:++ padding all datasets by 0 (for dilations)
201113-09:18:24,252 nipype.interface INFO:
stderr 2020-11-13T09:18:24.252381:++ frac 0 over 1 volumes gives min count 0
201113-09:18:24,252 nipype.interface INFO:
stderr 2020-11-13T09:18:24.252786:++ voxel limits: 0 clipped, 41385 survived, 97879 were zero
201113-09:18:24,252 nipype.interface INFO:
stderr 2020-11-13T09:18:24.252977:++ writing result sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201113-09:18:24,258 nipype.interface INFO:
stderr 2020-11-13T09:18:24.258421:++ Output dataset ./sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201113-09:18:24,472 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201113-09:18:24,504 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/sinker_0_functional_brain_mask".
201113-09:18:24,512 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:18:24,744 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_functional_brain_mask".
201113-09:18:24,745 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/functional_brain_mask_derivative_0".
201113-09:18:24,750 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201113-09:18:24,963 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201113-09:18:24,969 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:18:25,504 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201113-09:18:25,522 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.functional_brain_mask_derivative_0".
201113-09:18:25,523 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain".
201113-09:18:25,531 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:18:25,786 nipype.interface INFO:
stderr 2020-11-13T09:18:25.785898:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:18:25,786 nipype.interface INFO:
stderr 2020-11-13T09:18:25.786401:++ Authored by: A cast of thousands
201113-09:18:29,57 nipype.interface INFO:
stderr 2020-11-13T09:18:29.057672:++ Output dataset ./sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:18:29,291 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:18:29,293 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize".
201113-09:18:29,299 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201113-09:18:31,788 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:18:31,790 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201113-09:18:31,796 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:18:32,770 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201113-09:18:32,772 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201113-09:18:32,777 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:18:33,34 nipype.interface INFO:
stderr 2020-11-13T09:18:33.034618:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:18:33,35 nipype.interface INFO:
stderr 2020-11-13T09:18:33.035073:++ Authored by: KR Hammett & RW Cox
201113-09:18:33,635 nipype.interface INFO:
stderr 2020-11-13T09:18:33.635624:++ Output dataset ./sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:18:33,873 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.functional_mean".
201113-09:18:33,875 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-181_ses-2/qc_snr_0/_scan_tgng_run-2/std_dev".
201113-09:18:33,883 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/qc_snr_0/_scan_tgng_run-2/std_dev/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:18:34,142 nipype.interface INFO:
stderr 2020-11-13T09:18:34.142663:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:18:34,143 nipype.interface INFO:
stderr 2020-11-13T09:18:34.143176:++ Authored by: KR Hammett & RW Cox
201113-09:18:34,694 nipype.interface INFO:
stderr 2020-11-13T09:18:34.694585:++ Output dataset ./sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:18:34,932 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.qc_snr_0.std_dev".
201113-09:18:34,934 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/sinker_0_functional_preprocessed".
201113-09:18:34,941 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:18:35,182 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed".
201113-09:18:35,185 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize".
201113-09:18:35,191 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:18:36,398 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:18:36,400 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/sinker_0_functional_preprocessed_mask".
201113-09:18:36,408 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:18:36,644 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed_mask".
201113-09:18:36,646 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean".
201113-09:18:36,652 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:18:36,920 nipype.interface INFO:
stderr 2020-11-13T09:18:36.920371:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:18:36,921 nipype.interface INFO:
stderr 2020-11-13T09:18:36.921092:++ Authored by: KR Hammett & RW Cox
201113-09:18:37,504 nipype.interface INFO:
stderr 2020-11-13T09:18:37.504738:++ Output dataset ./sub-181_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201113-09:18:37,739 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:18:37,741 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/sinker_0_mean_functional".
201113-09:18:37,749 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:18:37,990 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_mean_functional".
201113-09:18:37,993 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/norm_motion_params".
201113-09:18:38,0 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:18:38,239 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:18:38,244 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/sinker_0_slice_time_corrected".
201113-09:18:38,253 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:18:38,487 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_slice_time_corrected".
201113-09:18:38,490 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-2/sinker_0_raw_functional".
201113-09:18:38,498 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:18:38,854 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_raw_functional".
201113-09:18:38,856 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_tgng_run-2/check_func_scan".
201113-09:18:38,893 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201113-09:18:39,135 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.check_func_scan".
201113-09:18:39,148 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_tgng_run-1/select_scan_params".
201113-09:18:39,180 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:18:39,421 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.select_scan_params".
201113-09:18:39,433 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_tgng_run-1/s3_scan_params".
201113-09:18:39,443 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:18:39,684 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.s3_scan_params".
201113-09:18:39,687 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/scan_params_0".
201113-09:18:39,697 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-09:18:39,936 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.scan_params_0".
201113-09:18:39,939 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_tgng_run-1/selectrest".
201113-09:18:39,979 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-09:18:40,223 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.selectrest".
201113-09:18:40,234 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_tgng_run-1/check_for_s3".
201113-09:18:40,240 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-09:18:40,558 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.check_for_s3".
201113-09:18:40,560 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-181_ses-2/edit_func_0/_scan_tgng_run-1/func_get_idx".
201113-09:18:40,566 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-09:18:40,801 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.edit_func_0.func_get_idx".
201113-09:18:40,802 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-181_ses-2/edit_func_0/_scan_tgng_run-1/func_drop_trs".
201113-09:18:40,809 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-181/ses-2/func/sub-181_ses-2_task-tgng_run-1_bold.nii.gz[0..129] -expr "a" -prefix sub-181_ses-2_task-tgng_run-1_bold_calc.nii.gz
201113-09:18:41,65 nipype.interface INFO:
stderr 2020-11-13T09:18:41.065556:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:18:41,66 nipype.interface INFO:
stderr 2020-11-13T09:18:41.066053:++ Authored by: A cast of thousands
201113-09:18:46,662 nipype.interface INFO:
stderr 2020-11-13T09:18:46.662293:++ Output dataset ./sub-181_ses-2_task-tgng_run-1_bold_calc.nii.gz
201113-09:18:46,912 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.edit_func_0.func_drop_trs".
201113-09:18:46,914 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique".
201113-09:18:46,962 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-181_ses-2_task-tgng_run-1_bold_calc.nii.gz
201113-09:18:47,217 nipype.interface INFO:
stderr 2020-11-13T09:18:47.217086:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:18:47,217 nipype.interface INFO:
stderr 2020-11-13T09:18:47.217570:++ Authored by: RW Cox
201113-09:18:47,220 nipype.interface INFO:
stderr 2020-11-13T09:18:47.220178:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-181_ses-2_task-tgng_run-1_bold_calc.nii.gz
201113-09:18:47,220 nipype.interface INFO:
stderr 2020-11-13T09:18:47.220791: + deoblique
201113-09:18:47,221 nipype.interface INFO:
stderr 2020-11-13T09:18:47.221244: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-181_ses-2_task-tgng_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-181_ses-2_task-tgng_run-1_bold_calc.nii.gz in NIFTI storage)
201113-09:18:51,23 nipype.interface INFO:
stderr 2020-11-13T09:18:51.023082:++ 3drefit processed 1 datasets
201113-09:18:51,268 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:18:51,270 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient".
201113-09:18:51,278 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-2_task-tgng_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-181_ses-2_task-tgng_run-1_bold_calc.nii.gz
201113-09:18:55,721 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:18:55,723 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI".
201113-09:18:55,729 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-tgng_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-181_ses-2_task-tgng_run-1_bold_calc_resample.nii.gz
201113-09:18:55,990 nipype.interface INFO:
stderr 2020-11-13T09:18:55.990672:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:18:55,991 nipype.interface INFO:
stderr 2020-11-13T09:18:55.991424:++ Authored by: KR Hammett & RW Cox
201113-09:18:56,478 nipype.interface INFO:
stderr 2020-11-13T09:18:56.478758:++ Output dataset ./sub-181_ses-2_task-tgng_run-1_bold_calc_resample_tstat.nii.gz
201113-09:18:56,709 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:18:56,716 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref".
201113-09:18:56,724 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-2_task-tgng_run-1_bold_calc_resample.1D -1Dmatrix_save sub-181_ses-2_task-tgng_run-1_bold_calc_resample.aff12.1D -prefix sub-181_ses-2_task-tgng_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-181_ses-2_task-tgng_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-2_task-tgng_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref/sub-181_ses-2_task-tgng_run-1_bold_calc_resample.nii.gz
201113-09:18:56,995 nipype.interface INFO:
stderr 2020-11-13T09:18:56.994974:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:18:56,995 nipype.interface INFO:
stderr 2020-11-13T09:18:56.995511:++ Authored by: RW Cox
201113-09:18:57,11 nipype.interface INFO:
stderr 2020-11-13T09:18:57.011573:++ Coarse del was 10, replaced with 3
201113-09:20:47,665 nipype.interface INFO:
stderr 2020-11-13T09:20:47.665402:++ Max displacement in automask = 0.37 (mm) at sub-brick 129
201113-09:20:47,666 nipype.interface INFO:
stderr 2020-11-13T09:20:47.666072:++ Max delta displ in automask = 0.23 (mm) at sub-brick 64
201113-09:20:51,365 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:20:51,367 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion".
201113-09:20:51,373 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-tgng_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-181_ses-2_task-tgng_run-1_bold_calc_resample_volreg.nii.gz
201113-09:20:51,638 nipype.interface INFO:
stderr 2020-11-13T09:20:51.638361:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:20:51,638 nipype.interface INFO:
stderr 2020-11-13T09:20:51.638816:++ Authored by: KR Hammett & RW Cox
201113-09:20:52,128 nipype.interface INFO:
stderr 2020-11-13T09:20:52.128554:++ Output dataset ./sub-181_ses-2_task-tgng_run-1_bold_calc_resample_volreg_tstat.nii.gz
201113-09:20:52,347 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:20:52,349 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt".
201113-09:20:52,355 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-181_ses-2_task-tgng_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-181_ses-2_task-tgng_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:21:16,36 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:21:16,45 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calculate_FDJ".
201113-09:21:16,52 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201113-09:21:16,287 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201113-09:21:16,289 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/sinker_0_frame_wise_displacement_jenkinson".
201113-09:21:16,297 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:21:16,533 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201113-09:21:16,535 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/sinker_0_max_displacement".
201113-09:21:16,544 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:21:16,780 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_max_displacement".
201113-09:21:16,782 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/sinker_0_coordinate_transformation".
201113-09:21:16,803 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:21:17,74 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_coordinate_transformation".
201113-09:21:17,86 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull".
201113-09:21:17,93 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf.nii.gz
201113-09:21:17,355 nipype.interface INFO:
stderr 2020-11-13T09:21:17.355339:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:21:17,355 nipype.interface INFO:
stderr 2020-11-13T09:21:17.355854:++ Authored by: KR Hammett & RW Cox
201113-09:21:17,891 nipype.interface INFO:
stderr 2020-11-13T09:21:17.891612:++ Output dataset ./sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat.nii.gz
201113-09:21:18,117 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:21:18,119 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass".
201113-09:21:18,125 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:21:20,96 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:21:20,99 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate".
201113-09:21:20,105 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:21:20,881 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:21:20,883 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask".
201113-09:21:20,890 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask/sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:21:21,408 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:21:21,410 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize".
201113-09:21:21,417 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize/sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:21:21,709 nipype.interface INFO:
stderr 2020-11-13T09:21:21.709159:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:22:43,495 nipype.interface INFO:
stderr 2020-11-13T09:22:43.495040: + Pre-processing: IAV..UW[s4670]Im
201113-09:22:43,513 nipype.interface INFO:
stderr 2020-11-13T09:22:43.513434:++ Output dataset ./uni.nii.gz
201113-09:22:43,513 nipype.interface INFO:
stderr 2020-11-13T09:22:43.513822:++ ===== Elapsed = 81.8 sec
201113-09:22:43,767 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:22:43,795 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass".
201113-09:22:43,803 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:22:44,63 nipype.interface INFO:
stderr 2020-11-13T09:22:44.063053:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:22:44,63 nipype.interface INFO:
stderr 2020-11-13T09:22:44.063509:++ Authored by: Emperor Zhark
201113-09:22:44,65 nipype.interface INFO:
stderr 2020-11-13T09:22:44.065877:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:22:44,70 nipype.interface INFO:
stderr 2020-11-13T09:22:44.070505:++ Forming automask
201113-09:22:44,71 nipype.interface INFO:
stderr 2020-11-13T09:22:44.071933: + Fixed clip level = 403.650085
201113-09:22:44,75 nipype.interface INFO:
stderr 2020-11-13T09:22:44.075434: + Used gradual clip level = 370.142487 .. 479.320435
201113-09:22:44,75 nipype.interface INFO:
stderr 2020-11-13T09:22:44.075643: + Number voxels above clip level = 34393
201113-09:22:44,75 nipype.interface INFO:
stderr 2020-11-13T09:22:44.075800: + Clustering voxels ...
201113-09:22:44,77 nipype.interface INFO:
stderr 2020-11-13T09:22:44.077088: + Largest cluster has 34387 voxels
201113-09:22:44,78 nipype.interface INFO:
stderr 2020-11-13T09:22:44.078522: + Clustering voxels ...
201113-09:22:44,79 nipype.interface INFO:
stderr 2020-11-13T09:22:44.079796: + Largest cluster has 33729 voxels
201113-09:22:44,83 nipype.interface INFO:
stderr 2020-11-13T09:22:44.083300: + Filled 902 voxels in small holes; now have 34631 voxels
201113-09:22:44,86 nipype.interface INFO:
stderr 2020-11-13T09:22:44.086620: + Filled 5 voxels in large holes; now have 34636 voxels
201113-09:22:44,87 nipype.interface INFO:
stderr 2020-11-13T09:22:44.087935: + Clustering voxels ...
201113-09:22:44,89 nipype.interface INFO:
stderr 2020-11-13T09:22:44.089441: + Largest cluster has 34631 voxels
201113-09:22:44,89 nipype.interface INFO:
stderr 2020-11-13T09:22:44.089673: + Clustering non-brain voxels ...
201113-09:22:44,89 nipype.interface INFO:
stderr 2020-11-13T09:22:44.089816: + Clustering voxels ...
201113-09:22:44,92 nipype.interface INFO:
stderr 2020-11-13T09:22:44.092747: + Largest cluster has 104551 voxels
201113-09:22:44,93 nipype.interface INFO:
stderr 2020-11-13T09:22:44.093082: + Mask now has 34713 voxels
201113-09:22:44,93 nipype.interface INFO:
stderr 2020-11-13T09:22:44.093236:++ Dilating automask
201113-09:22:44,104 nipype.interface INFO:
stderr 2020-11-13T09:22:44.104801: + Clustering voxels ...
201113-09:22:44,107 nipype.interface INFO:
stderr 2020-11-13T09:22:44.107242: + Largest cluster has 97716 voxels
201113-09:22:44,107 nipype.interface INFO:
stderr 2020-11-13T09:22:44.107579:++ 41548 voxels in the mask [out of 139264: 29.83%]
201113-09:22:44,107 nipype.interface INFO:
stderr 2020-11-13T09:22:44.107750:++ first 10 x-planes are zero [from R]
201113-09:22:44,107 nipype.interface INFO:
stderr 2020-11-13T09:22:44.107906:++ last 7 x-planes are zero [from L]
201113-09:22:44,108 nipype.interface INFO:
stderr 2020-11-13T09:22:44.108054:++ first 3 y-planes are zero [from P]
201113-09:22:44,108 nipype.interface INFO:
stderr 2020-11-13T09:22:44.108194:++ last 3 y-planes are zero [from A]
201113-09:22:44,108 nipype.interface INFO:
stderr 2020-11-13T09:22:44.108332:++ first 0 z-planes are zero [from I]
201113-09:22:44,108 nipype.interface INFO:
stderr 2020-11-13T09:22:44.108470:++ last 2 z-planes are zero [from S]
201113-09:22:44,113 nipype.interface INFO:
stderr 2020-11-13T09:22:44.113068:++ Output dataset ./uni_mask.nii.gz
201113-09:22:44,113 nipype.interface INFO:
stderr 2020-11-13T09:22:44.113256:++ applying mask to original data
201113-09:22:44,114 nipype.interface INFO:
stderr 2020-11-13T09:22:44.114057:++ Writing masked data
201113-09:22:44,129 nipype.interface INFO:
stderr 2020-11-13T09:22:44.129612:++ Output dataset ./uni_masked.nii.gz
201113-09:22:44,130 nipype.interface INFO:
stderr 2020-11-13T09:22:44.130011:++ CPU time = 0.000000 sec
201113-09:22:44,348 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:22:44,350 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks".
201113-09:22:44,356 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:22:44,838 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:22:44,840 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/cal_DVARS".
201113-09:22:44,847 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201113-09:22:45,592 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201113-09:22:45,594 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain".
201113-09:22:45,603 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:22:45,862 nipype.interface INFO:
stderr 2020-11-13T09:22:45.862782:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:22:45,863 nipype.interface INFO:
stderr 2020-11-13T09:22:45.863608:++ Authored by: A cast of thousands
201113-09:22:48,802 nipype.interface INFO:
stderr 2020-11-13T09:22:48.802090:++ Output dataset ./sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:22:49,73 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:22:49,75 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize".
201113-09:22:49,82 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain/sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201113-09:22:51,438 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:22:51,440 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize".
201113-09:22:51,447 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize/sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:22:52,609 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:22:52,611 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean".
201113-09:22:52,618 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:22:52,891 nipype.interface INFO:
stderr 2020-11-13T09:22:52.890790:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:22:52,891 nipype.interface INFO:
stderr 2020-11-13T09:22:52.891880:++ Authored by: KR Hammett & RW Cox
201113-09:22:53,214 nipype.interface INFO:
stderr 2020-11-13T09:22:53.214008:++ Output dataset ./sub-181_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201113-09:22:53,473 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:22:53,474 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/norm_motion_params".
201113-09:22:53,481 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:22:53,720 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:22:53,721 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-2/qc_motion_0/_scan_tgng_run-1/motion_plot".
201113-09:22:53,725 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201113-09:22:54,190 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.qc_motion_0.motion_plot".
201113-09:22:54,191 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/sinker_0_qc___movement_trans_plot".
201113-09:22:54,199 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:22:54,411 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc___movement_trans_plot/_scan_tgng_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc/movement_trans_plot/_scan_tgng_run-1/motion_trans_plot.png
201113-09:22:54,434 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_trans_plot".
201113-09:22:54,435 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/sinker_0_qc___movement_rot_plot".
201113-09:22:54,443 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:22:54,654 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc___movement_rot_plot/_scan_tgng_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc/movement_rot_plot/_scan_tgng_run-1/motion_rot_plot.png
201113-09:22:54,678 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_rot_plot".
201113-09:22:54,680 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calc_motion_parameters".
201113-09:22:54,688 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:22:54,926 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201113-09:22:54,928 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/sinker_0_motion_params".
201113-09:22:54,936 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:22:55,174 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_motion_params".
201113-09:22:55,175 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calculate_FD".
201113-09:22:55,181 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201113-09:22:55,418 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201113-09:22:55,420 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/sinker_0_frame_wise_displacement_power".
201113-09:22:55,427 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:22:55,662 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_power".
201113-09:22:55,663 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calc_power_parameters".
201113-09:22:55,669 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:22:55,902 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201113-09:22:55,904 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/sinker_0_power_params".
201113-09:22:55,911 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:22:56,149 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_power_params".
201113-09:22:56,151 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/sinker_0_movement_parameters".
201113-09:22:56,158 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:22:56,398 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_movement_parameters".
201113-09:22:56,400 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/func_despiked_0".
201113-09:22:56,405 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-181_ses-2_task-tgng_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/func_despiked_0/sub-181_ses-2_task-tgng_run-1_bold_calc.nii.gz
201113-09:22:56,683 nipype.interface INFO:
stderr 2020-11-13T09:22:56.682865:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:22:56,683 nipype.interface INFO:
stderr 2020-11-13T09:22:56.683535:++ Authored by: RW Cox
201113-09:22:56,686 nipype.interface INFO:
stderr 2020-11-13T09:22:56.686759:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:22:56,687 nipype.interface INFO:
stderr 2020-11-13T09:22:56.686759: such as /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/func_despiked_0/sub-181_ses-2_task-tgng_run-1_bold_calc.nii.gz,
201113-09:22:56,687 nipype.interface INFO:
stderr 2020-11-13T09:22:56.686759: or viewing/combining it with volumes of differing obliquity,
201113-09:22:56,687 nipype.interface INFO:
stderr 2020-11-13T09:22:56.686759: you should consider running:
201113-09:22:56,687 nipype.interface INFO:
stderr 2020-11-13T09:22:56.686759: 3dWarp -deoblique
201113-09:22:56,687 nipype.interface INFO:
stderr 2020-11-13T09:22:56.686759: on this and other oblique datasets in the same session.
201113-09:22:56,687 nipype.interface INFO:
stderr 2020-11-13T09:22:56.686759: See 3dWarp -help for details.
201113-09:22:56,688 nipype.interface INFO:
stderr 2020-11-13T09:22:56.688299:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/func_despiked_0/sub-181_ses-2_task-tgng_run-1_bold_calc.nii.gz is 14.900002 degrees from plumb.
201113-09:22:56,688 nipype.interface INFO:
stderr 2020-11-13T09:22:56.688549:++ Input dataset is in short format, but output will be in float format
201113-09:22:56,688 nipype.interface INFO:
stderr 2020-11-13T09:22:56.688749:++ ignoring first 0 time points, using last 130
201113-09:22:56,688 nipype.interface INFO:
stderr 2020-11-13T09:22:56.688953:++ using 130 time points => -corder 4
201113-09:22:56,689 nipype.interface INFO:
stderr 2020-11-13T09:22:56.689151:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/func_despiked_0/sub-181_ses-2_task-tgng_run-1_bold_calc.nii.gz
201113-09:22:57,255 nipype.interface INFO:
stderr 2020-11-13T09:22:57.255463:++ 38943 voxels in the automask [out of 139264 in dataset]
201113-09:22:57,261 nipype.interface INFO:
stderr 2020-11-13T09:22:57.261062:++ 65926 voxels in the dilated automask [out of 139264 in dataset]
201113-09:22:57,273 nipype.interface INFO:
stderr 2020-11-13T09:22:57.273478:++ Procesing time series with OLD model fit algorithm
201113-09:22:57,273 nipype.interface INFO:
stderr 2020-11-13T09:22:57.273851:++ smash edit thresholds: 3.1 .. 5.0 MADs
201113-09:22:57,274 nipype.interface INFO:
stderr 2020-11-13T09:22:57.274064: + [ 3.457% .. 0.072% of normal distribution]
201113-09:22:57,274 nipype.interface INFO:
stderr 2020-11-13T09:22:57.274233: + [ 8.839% .. 3.125% of Laplace distribution]
201113-09:22:57,274 nipype.interface INFO:
stderr 2020-11-13T09:22:57.274434:++ start OpenMP thread #0
201113-09:23:03,645 nipype.interface INFO:
stderr 2020-11-13T09:23:03.645180:.............................
201113-09:23:03,645 nipype.interface INFO:
stderr 2020-11-13T09:23:03.645536:++ Elapsed despike time = 6s 371ms
201113-09:23:03,645 nipype.interface INFO:
stderr 2020-11-13T09:23:03.645688:
201113-09:23:03,646 nipype.interface INFO:
stderr 2020-11-13T09:23:03.646541:++ FINAL: 8570380 data points, 537844 edits [6.276%], 48410 big edits [0.565%]
201113-09:23:08,471 nipype.interface INFO:
stderr 2020-11-13T09:23:08.471736:++ Output dataset ./sub-181_ses-2_task-tgng_run-1_bold_calc_despike.nii.gz
201113-09:23:08,728 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_despiked_0".
201113-09:23:08,730 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing".
201113-09:23:08,739 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:23:08,740 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing/sub-181_ses-2_task-tgng_run-1_bold_calc_despike.nii.gz
201113-09:23:08,953 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:23:09,8 nipype.interface INFO:
stderr 2020-11-13T09:23:09.008275:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:23:09,12 nipype.interface INFO:
stderr 2020-11-13T09:23:09.012238:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:23:09,12 nipype.interface INFO:
stderr 2020-11-13T09:23:09.012238: such as /outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing/sub-181_ses-2_task-tgng_run-1_bold_calc_despike.nii.gz,
201113-09:23:09,12 nipype.interface INFO:
stderr 2020-11-13T09:23:09.012238: or viewing/combining it with volumes of differing obliquity,
201113-09:23:09,12 nipype.interface INFO:
stderr 2020-11-13T09:23:09.012238: you should consider running:
201113-09:23:09,12 nipype.interface INFO:
stderr 2020-11-13T09:23:09.012238: 3dWarp -deoblique
201113-09:23:09,13 nipype.interface INFO:
stderr 2020-11-13T09:23:09.012238: on this and other oblique datasets in the same session.
201113-09:23:09,13 nipype.interface INFO:
stderr 2020-11-13T09:23:09.012238: See 3dWarp -help for details.
201113-09:23:09,13 nipype.interface INFO:
stderr 2020-11-13T09:23:09.013408:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing/sub-181_ses-2_task-tgng_run-1_bold_calc_despike.nii.gz is 14.900002 degrees from plumb.
201113-09:23:13,714 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_slice_timing_correction_0.slice_timing".
201113-09:23:13,715 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique".
201113-09:23:13,784 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift.nii.gz
201113-09:23:14,46 nipype.interface INFO:
stderr 2020-11-13T09:23:14.046463:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:23:14,47 nipype.interface INFO:
stderr 2020-11-13T09:23:14.047029:++ Authored by: RW Cox
201113-09:23:14,49 nipype.interface INFO:
stderr 2020-11-13T09:23:14.049386:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift.nii.gz
201113-09:23:14,50 nipype.interface INFO:
stderr 2020-11-13T09:23:14.050092: + deoblique
201113-09:23:14,50 nipype.interface INFO:
stderr 2020-11-13T09:23:14.050271: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201113-09:23:16,456 nipype.interface INFO:
stderr 2020-11-13T09:23:16.456450:++ 3drefit processed 1 datasets
201113-09:23:16,683 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:23:16,685 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient".
201113-09:23:16,691 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift.nii.gz
201113-09:23:19,772 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:23:19,774 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI".
201113-09:23:19,780 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-09:23:20,28 nipype.interface INFO:
stderr 2020-11-13T09:23:20.028228:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:23:20,28 nipype.interface INFO:
stderr 2020-11-13T09:23:20.028644:++ Authored by: KR Hammett & RW Cox
201113-09:23:20,660 nipype.interface INFO:
stderr 2020-11-13T09:23:20.660361:++ Output dataset ./sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201113-09:23:20,901 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:23:20,903 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref".
201113-09:23:20,911 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-09:23:21,173 nipype.interface INFO:
stderr 2020-11-13T09:23:21.173332:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:23:21,173 nipype.interface INFO:
stderr 2020-11-13T09:23:21.173805:++ Authored by: RW Cox
201113-09:23:21,181 nipype.interface INFO:
stderr 2020-11-13T09:23:21.181734:++ Coarse del was 10, replaced with 3
201113-09:25:11,661 nipype.interface INFO:
stderr 2020-11-13T09:25:11.661561:++ Max displacement in automask = 0.36 (mm) at sub-brick 127
201113-09:25:11,662 nipype.interface INFO:
stderr 2020-11-13T09:25:11.662193:++ Max delta displ in automask = 0.19 (mm) at sub-brick 64
201113-09:25:16,562 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:25:16,587 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion".
201113-09:25:16,594 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201113-09:25:16,860 nipype.interface INFO:
stderr 2020-11-13T09:25:16.860419:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:25:16,861 nipype.interface INFO:
stderr 2020-11-13T09:25:16.860926:++ Authored by: KR Hammett & RW Cox
201113-09:25:17,678 nipype.interface INFO:
stderr 2020-11-13T09:25:17.678888:++ Output dataset ./sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201113-09:25:17,953 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:25:17,955 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt".
201113-09:25:17,962 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:25:39,823 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:25:39,833 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/sinker_0_motion_correct".
201113-09:25:39,842 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:25:40,75 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_motion_correct".
201113-09:25:40,76 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull".
201113-09:25:40,85 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201113-09:25:40,352 nipype.interface INFO:
stderr 2020-11-13T09:25:40.352829:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:25:40,353 nipype.interface INFO:
stderr 2020-11-13T09:25:40.353388:++ Authored by: KR Hammett & RW Cox
201113-09:25:41,23 nipype.interface INFO:
stderr 2020-11-13T09:25:41.023876:++ Output dataset ./sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201113-09:25:41,259 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:25:41,261 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass".
201113-09:25:41,267 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:25:43,226 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:25:43,229 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate".
201113-09:25:43,235 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:25:43,991 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:25:43,993 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask".
201113-09:25:43,999 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:25:44,507 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:25:44,509 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize".
201113-09:25:44,515 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:25:44,777 nipype.interface INFO:
stderr 2020-11-13T09:25:44.777349:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:27:06,500 nipype.interface INFO:
stderr 2020-11-13T09:27:06.500707: + Pre-processing: IAV..UW[s4670]Im
201113-09:27:06,519 nipype.interface INFO:
stderr 2020-11-13T09:27:06.519439:++ Output dataset ./uni.nii.gz
201113-09:27:06,519 nipype.interface INFO:
stderr 2020-11-13T09:27:06.519866:++ ===== Elapsed = 81.7 sec
201113-09:27:06,785 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:27:06,787 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass".
201113-09:27:06,794 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:27:07,82 nipype.interface INFO:
stderr 2020-11-13T09:27:07.082148:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:27:07,82 nipype.interface INFO:
stderr 2020-11-13T09:27:07.082703:++ Authored by: Emperor Zhark
201113-09:27:07,84 nipype.interface INFO:
stderr 2020-11-13T09:27:07.084702:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:27:07,88 nipype.interface INFO:
stderr 2020-11-13T09:27:07.088836:++ Forming automask
201113-09:27:07,90 nipype.interface INFO:
stderr 2020-11-13T09:27:07.090701: + Fixed clip level = 403.796143
201113-09:27:07,95 nipype.interface INFO:
stderr 2020-11-13T09:27:07.095034: + Used gradual clip level = 370.609589 .. 479.217407
201113-09:27:07,95 nipype.interface INFO:
stderr 2020-11-13T09:27:07.095361: + Number voxels above clip level = 34422
201113-09:27:07,95 nipype.interface INFO:
stderr 2020-11-13T09:27:07.095558: + Clustering voxels ...
201113-09:27:07,97 nipype.interface INFO:
stderr 2020-11-13T09:27:07.097532: + Largest cluster has 34414 voxels
201113-09:27:07,99 nipype.interface INFO:
stderr 2020-11-13T09:27:07.099006: + Clustering voxels ...
201113-09:27:07,100 nipype.interface INFO:
stderr 2020-11-13T09:27:07.100195: + Largest cluster has 33748 voxels
201113-09:27:07,103 nipype.interface INFO:
stderr 2020-11-13T09:27:07.103585: + Filled 904 voxels in small holes; now have 34652 voxels
201113-09:27:07,106 nipype.interface INFO:
stderr 2020-11-13T09:27:07.106933: + Filled 5 voxels in large holes; now have 34657 voxels
201113-09:27:07,108 nipype.interface INFO:
stderr 2020-11-13T09:27:07.108364: + Clustering voxels ...
201113-09:27:07,109 nipype.interface INFO:
stderr 2020-11-13T09:27:07.109528: + Largest cluster has 34652 voxels
201113-09:27:07,109 nipype.interface INFO:
stderr 2020-11-13T09:27:07.109759: + Clustering non-brain voxels ...
201113-09:27:07,109 nipype.interface INFO:
stderr 2020-11-13T09:27:07.109901: + Clustering voxels ...
201113-09:27:07,112 nipype.interface INFO:
stderr 2020-11-13T09:27:07.112842: + Largest cluster has 104530 voxels
201113-09:27:07,113 nipype.interface INFO:
stderr 2020-11-13T09:27:07.113217: + Mask now has 34734 voxels
201113-09:27:07,113 nipype.interface INFO:
stderr 2020-11-13T09:27:07.113402:++ Dilating automask
201113-09:27:07,125 nipype.interface INFO:
stderr 2020-11-13T09:27:07.125106: + Clustering voxels ...
201113-09:27:07,127 nipype.interface INFO:
stderr 2020-11-13T09:27:07.127780: + Largest cluster has 97678 voxels
201113-09:27:07,128 nipype.interface INFO:
stderr 2020-11-13T09:27:07.128220:++ 41586 voxels in the mask [out of 139264: 29.86%]
201113-09:27:07,128 nipype.interface INFO:
stderr 2020-11-13T09:27:07.128410:++ first 10 x-planes are zero [from R]
201113-09:27:07,128 nipype.interface INFO:
stderr 2020-11-13T09:27:07.128568:++ last 7 x-planes are zero [from L]
201113-09:27:07,128 nipype.interface INFO:
stderr 2020-11-13T09:27:07.128711:++ first 3 y-planes are zero [from P]
201113-09:27:07,128 nipype.interface INFO:
stderr 2020-11-13T09:27:07.128858:++ last 3 y-planes are zero [from A]
201113-09:27:07,129 nipype.interface INFO:
stderr 2020-11-13T09:27:07.129000:++ first 0 z-planes are zero [from I]
201113-09:27:07,129 nipype.interface INFO:
stderr 2020-11-13T09:27:07.129139:++ last 2 z-planes are zero [from S]
201113-09:27:07,133 nipype.interface INFO:
stderr 2020-11-13T09:27:07.133823:++ Output dataset ./uni_mask.nii.gz
201113-09:27:07,134 nipype.interface INFO:
stderr 2020-11-13T09:27:07.134093:++ applying mask to original data
201113-09:27:07,134 nipype.interface INFO:
stderr 2020-11-13T09:27:07.134959:++ Writing masked data
201113-09:27:07,150 nipype.interface INFO:
stderr 2020-11-13T09:27:07.150766:++ Output dataset ./uni_masked.nii.gz
201113-09:27:07,151 nipype.interface INFO:
stderr 2020-11-13T09:27:07.151340:++ CPU time = 0.000000 sec
201113-09:27:07,384 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:27:07,385 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks".
201113-09:27:07,392 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:27:07,888 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:27:07,890 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201113-09:27:07,895 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-09:27:08,131 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201113-09:27:08,133 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201113-09:27:08,140 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:27:08,398 nipype.interface INFO:
stderr 2020-11-13T09:27:08.398703:++ no -frac option: defaulting to -union
201113-09:27:08,399 nipype.interface INFO:
stderr 2020-11-13T09:27:08.399227:++ processing 1 input dataset(s), NN=2...
201113-09:27:08,399 nipype.interface INFO:
stderr 2020-11-13T09:27:08.399404:++ padding all datasets by 0 (for dilations)
201113-09:27:08,404 nipype.interface INFO:
stderr 2020-11-13T09:27:08.404512:++ frac 0 over 1 volumes gives min count 0
201113-09:27:08,405 nipype.interface INFO:
stderr 2020-11-13T09:27:08.404994:++ voxel limits: 0 clipped, 41476 survived, 97788 were zero
201113-09:27:08,405 nipype.interface INFO:
stderr 2020-11-13T09:27:08.405194:++ writing result sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201113-09:27:08,410 nipype.interface INFO:
stderr 2020-11-13T09:27:08.410473:++ Output dataset ./sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201113-09:27:08,642 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201113-09:27:08,661 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/sinker_0_functional_brain_mask".
201113-09:27:08,669 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:27:08,903 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_functional_brain_mask".
201113-09:27:08,905 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/functional_brain_mask_derivative_0".
201113-09:27:08,910 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201113-09:27:09,122 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201113-09:27:09,129 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:27:09,709 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201113-09:27:09,729 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.functional_brain_mask_derivative_0".
201113-09:27:09,731 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain".
201113-09:27:09,739 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:27:09,999 nipype.interface INFO:
stderr 2020-11-13T09:27:09.999405:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:27:09,999 nipype.interface INFO:
stderr 2020-11-13T09:27:09.999936:++ Authored by: A cast of thousands
201113-09:27:13,283 nipype.interface INFO:
stderr 2020-11-13T09:27:13.283490:++ Output dataset ./sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:27:13,522 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:27:13,524 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize".
201113-09:27:13,530 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201113-09:27:16,39 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:27:16,41 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201113-09:27:16,47 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:27:17,20 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201113-09:27:17,22 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201113-09:27:17,28 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:27:17,287 nipype.interface INFO:
stderr 2020-11-13T09:27:17.287473:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:27:17,287 nipype.interface INFO:
stderr 2020-11-13T09:27:17.287964:++ Authored by: KR Hammett & RW Cox
201113-09:27:17,880 nipype.interface INFO:
stderr 2020-11-13T09:27:17.880257:++ Output dataset ./sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:27:18,104 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.functional_mean".
201113-09:27:18,105 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-181_ses-2/qc_snr_0/_scan_tgng_run-1/std_dev".
201113-09:27:18,113 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/qc_snr_0/_scan_tgng_run-1/std_dev/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:27:18,367 nipype.interface INFO:
stderr 2020-11-13T09:27:18.367512:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:27:18,368 nipype.interface INFO:
stderr 2020-11-13T09:27:18.367992:++ Authored by: KR Hammett & RW Cox
201113-09:27:18,918 nipype.interface INFO:
stderr 2020-11-13T09:27:18.918651:++ Output dataset ./sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:27:19,158 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.qc_snr_0.std_dev".
201113-09:27:19,160 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/sinker_0_functional_preprocessed".
201113-09:27:19,168 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:27:19,406 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed".
201113-09:27:19,408 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize".
201113-09:27:19,414 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:27:20,637 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:27:20,639 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/sinker_0_functional_preprocessed_mask".
201113-09:27:20,646 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:27:20,881 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed_mask".
201113-09:27:20,883 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean".
201113-09:27:20,891 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:27:21,151 nipype.interface INFO:
stderr 2020-11-13T09:27:21.151461:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:27:21,151 nipype.interface INFO:
stderr 2020-11-13T09:27:21.151928:++ Authored by: KR Hammett & RW Cox
201113-09:27:21,735 nipype.interface INFO:
stderr 2020-11-13T09:27:21.734985:++ Output dataset ./sub-181_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201113-09:27:21,953 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:27:21,954 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/sinker_0_mean_functional".
201113-09:27:21,961 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:27:22,195 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_mean_functional".
201113-09:27:22,198 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/norm_motion_params".
201113-09:27:22,204 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:27:22,442 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:27:22,444 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/sinker_0_slice_time_corrected".
201113-09:27:22,451 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:27:22,683 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_slice_time_corrected".
201113-09:27:22,684 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_tgng_run-1/sinker_0_raw_functional".
201113-09:27:22,691 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:27:23,42 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_raw_functional".
201113-09:27:23,44 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_tgng_run-1/check_func_scan".
201113-09:27:23,76 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201113-09:27:23,315 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.check_func_scan".
201113-09:27:23,326 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_rest_run-1/select_scan_params".
201113-09:27:23,355 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:27:23,595 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.select_scan_params".
201113-09:27:23,607 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_rest_run-1/s3_scan_params".
201113-09:27:23,615 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:27:23,852 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.s3_scan_params".
201113-09:27:23,855 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/scan_params_0".
201113-09:27:23,865 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-09:27:24,100 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.scan_params_0".
201113-09:27:24,103 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_rest_run-1/selectrest".
201113-09:27:24,135 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-09:27:24,377 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.selectrest".
201113-09:27:24,388 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_rest_run-1/check_for_s3".
201113-09:27:24,393 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-09:27:24,696 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.check_for_s3".
201113-09:27:24,698 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-181_ses-2/edit_func_0/_scan_rest_run-1/func_get_idx".
201113-09:27:24,705 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-09:27:24,944 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.edit_func_0.func_get_idx".
201113-09:27:24,945 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-181_ses-2/edit_func_0/_scan_rest_run-1/func_drop_trs".
201113-09:27:24,953 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-181/ses-2/func/sub-181_ses-2_task-rest_run-1_bold.nii.gz[0..179] -expr "a" -prefix sub-181_ses-2_task-rest_run-1_bold_calc.nii.gz
201113-09:27:25,222 nipype.interface INFO:
stderr 2020-11-13T09:27:25.222672:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:27:25,223 nipype.interface INFO:
stderr 2020-11-13T09:27:25.223286:++ Authored by: A cast of thousands
201113-09:27:33,183 nipype.interface INFO:
stderr 2020-11-13T09:27:33.183366:++ Output dataset ./sub-181_ses-2_task-rest_run-1_bold_calc.nii.gz
201113-09:27:33,452 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.edit_func_0.func_drop_trs".
201113-09:27:33,454 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique".
201113-09:27:33,510 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-181_ses-2_task-rest_run-1_bold_calc.nii.gz
201113-09:27:33,771 nipype.interface INFO:
stderr 2020-11-13T09:27:33.771078:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:27:33,771 nipype.interface INFO:
stderr 2020-11-13T09:27:33.771584:++ Authored by: RW Cox
201113-09:27:33,774 nipype.interface INFO:
stderr 2020-11-13T09:27:33.774560:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-181_ses-2_task-rest_run-1_bold_calc.nii.gz
201113-09:27:33,775 nipype.interface INFO:
stderr 2020-11-13T09:27:33.775210: + deoblique
201113-09:27:33,775 nipype.interface INFO:
stderr 2020-11-13T09:27:33.775392: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-181_ses-2_task-rest_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-181_ses-2_task-rest_run-1_bold_calc.nii.gz in NIFTI storage)
201113-09:27:39,226 nipype.interface INFO:
stderr 2020-11-13T09:27:39.226337:++ 3drefit processed 1 datasets
201113-09:27:39,491 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:27:39,492 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient".
201113-09:27:39,500 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-2_task-rest_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient/sub-181_ses-2_task-rest_run-1_bold_calc.nii.gz
201113-09:27:45,647 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:27:45,649 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI".
201113-09:27:45,656 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-rest_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI/sub-181_ses-2_task-rest_run-1_bold_calc_resample.nii.gz
201113-09:27:45,922 nipype.interface INFO:
stderr 2020-11-13T09:27:45.922050:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:27:45,922 nipype.interface INFO:
stderr 2020-11-13T09:27:45.922456:++ Authored by: KR Hammett & RW Cox
201113-09:27:46,530 nipype.interface INFO:
stderr 2020-11-13T09:27:46.530213:++ Output dataset ./sub-181_ses-2_task-rest_run-1_bold_calc_resample_tstat.nii.gz
201113-09:27:46,753 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:27:46,755 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_generate_ref".
201113-09:27:46,763 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-2_task-rest_run-1_bold_calc_resample.1D -1Dmatrix_save sub-181_ses-2_task-rest_run-1_bold_calc_resample.aff12.1D -prefix sub-181_ses-2_task-rest_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI/sub-181_ses-2_task-rest_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-2_task-rest_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_generate_ref/sub-181_ses-2_task-rest_run-1_bold_calc_resample.nii.gz
201113-09:27:47,29 nipype.interface INFO:
stderr 2020-11-13T09:27:47.029593:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:27:47,30 nipype.interface INFO:
stderr 2020-11-13T09:27:47.030245:++ Authored by: RW Cox
201113-09:27:47,40 nipype.interface INFO:
stderr 2020-11-13T09:27:47.040626:++ Coarse del was 10, replaced with 3
201113-09:30:15,166 nipype.interface INFO:
stderr 2020-11-13T09:30:15.166654:++ Max displacement in automask = 0.44 (mm) at sub-brick 87
201113-09:30:15,167 nipype.interface INFO:
stderr 2020-11-13T09:30:15.167580:++ Max delta displ in automask = 0.48 (mm) at sub-brick 87
201113-09:30:20,490 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:30:20,492 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion".
201113-09:30:20,500 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-rest_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion/sub-181_ses-2_task-rest_run-1_bold_calc_resample_volreg.nii.gz
201113-09:30:20,764 nipype.interface INFO:
stderr 2020-11-13T09:30:20.764059:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:30:20,764 nipype.interface INFO:
stderr 2020-11-13T09:30:20.764560:++ Authored by: KR Hammett & RW Cox
201113-09:30:21,387 nipype.interface INFO:
stderr 2020-11-13T09:30:21.387891:++ Output dataset ./sub-181_ses-2_task-rest_run-1_bold_calc_resample_volreg_tstat.nii.gz
201113-09:30:21,613 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:30:21,615 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt".
201113-09:30:21,621 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient/sub-181_ses-2_task-rest_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt/sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion/sub-181_ses-2_task-rest_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:31:07,391 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:31:07,403 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/calculate_FDJ".
201113-09:31:07,412 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201113-09:31:07,646 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201113-09:31:07,648 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/sinker_0_frame_wise_displacement_jenkinson".
201113-09:31:07,657 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:31:07,893 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201113-09:31:07,895 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/sinker_0_max_displacement".
201113-09:31:07,905 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:31:08,141 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_max_displacement".
201113-09:31:08,143 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/sinker_0_coordinate_transformation".
201113-09:31:08,169 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:31:08,452 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_coordinate_transformation".
201113-09:31:08,467 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull".
201113-09:31:08,473 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull/sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf.nii.gz
201113-09:31:08,727 nipype.interface INFO:
stderr 2020-11-13T09:31:08.727657:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:31:08,728 nipype.interface INFO:
stderr 2020-11-13T09:31:08.728410:++ Authored by: KR Hammett & RW Cox
201113-09:31:09,396 nipype.interface INFO:
stderr 2020-11-13T09:31:09.396341:++ Output dataset ./sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat.nii.gz
201113-09:31:09,617 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:31:09,619 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass".
201113-09:31:09,625 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull/sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:31:11,576 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:31:11,578 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate".
201113-09:31:11,584 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate/sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:31:12,212 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:31:12,214 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_mask".
201113-09:31:12,221 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate/sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_mask/sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:31:12,738 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:31:12,740 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/unifize".
201113-09:31:12,746 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/unifize/sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:31:13,15 nipype.interface INFO:
stderr 2020-11-13T09:31:13.014929:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:32:12,365 nipype.interface INFO:
stderr 2020-11-13T09:32:12.365346: + Pre-processing: IAV..UW[s3517]Im
201113-09:32:12,376 nipype.interface INFO:
stderr 2020-11-13T09:32:12.376586:++ Output dataset ./uni.nii.gz
201113-09:32:12,377 nipype.interface INFO:
stderr 2020-11-13T09:32:12.377215:++ ===== Elapsed = 59.4 sec
201113-09:32:12,637 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:32:12,653 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass".
201113-09:32:12,661 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:32:12,938 nipype.interface INFO:
stderr 2020-11-13T09:32:12.938708:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:32:12,939 nipype.interface INFO:
stderr 2020-11-13T09:32:12.939954:++ Authored by: Emperor Zhark
201113-09:32:12,943 nipype.interface INFO:
stderr 2020-11-13T09:32:12.943568:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:32:12,949 nipype.interface INFO:
stderr 2020-11-13T09:32:12.949299:++ Forming automask
201113-09:32:12,951 nipype.interface INFO:
stderr 2020-11-13T09:32:12.951317: + Fixed clip level = 437.126129
201113-09:32:12,955 nipype.interface INFO:
stderr 2020-11-13T09:32:12.955436: + Used gradual clip level = 412.243774 .. 490.342773
201113-09:32:12,955 nipype.interface INFO:
stderr 2020-11-13T09:32:12.955753: + Number voxels above clip level = 19470
201113-09:32:12,955 nipype.interface INFO:
stderr 2020-11-13T09:32:12.955951: + Clustering voxels ...
201113-09:32:12,957 nipype.interface INFO:
stderr 2020-11-13T09:32:12.957462: + Largest cluster has 19464 voxels
201113-09:32:12,958 nipype.interface INFO:
stderr 2020-11-13T09:32:12.958677: + Clustering voxels ...
201113-09:32:12,959 nipype.interface INFO:
stderr 2020-11-13T09:32:12.959545: + Largest cluster has 18969 voxels
201113-09:32:12,962 nipype.interface INFO:
stderr 2020-11-13T09:32:12.962820: + Filled 582 voxels in small holes; now have 19551 voxels
201113-09:32:12,966 nipype.interface INFO:
stderr 2020-11-13T09:32:12.966034: + Filled 6 voxels in large holes; now have 19557 voxels
201113-09:32:12,967 nipype.interface INFO:
stderr 2020-11-13T09:32:12.967174: + Clustering voxels ...
201113-09:32:12,968 nipype.interface INFO:
stderr 2020-11-13T09:32:12.968034: + Largest cluster has 19557 voxels
201113-09:32:12,968 nipype.interface INFO:
stderr 2020-11-13T09:32:12.968262: + Clustering non-brain voxels ...
201113-09:32:12,968 nipype.interface INFO:
stderr 2020-11-13T09:32:12.968410: + Clustering voxels ...
201113-09:32:12,971 nipype.interface INFO:
stderr 2020-11-13T09:32:12.971573: + Largest cluster has 115564 voxels
201113-09:32:12,971 nipype.interface INFO:
stderr 2020-11-13T09:32:12.971913: + Mask now has 19604 voxels
201113-09:32:12,972 nipype.interface INFO:
stderr 2020-11-13T09:32:12.972099:++ Dilating automask
201113-09:32:12,978 nipype.interface INFO:
stderr 2020-11-13T09:32:12.978296: + Clustering voxels ...
201113-09:32:12,981 nipype.interface INFO:
stderr 2020-11-13T09:32:12.981057: + Largest cluster has 110942 voxels
201113-09:32:12,981 nipype.interface INFO:
stderr 2020-11-13T09:32:12.981436:++ 24226 voxels in the mask [out of 135168: 17.92%]
201113-09:32:12,981 nipype.interface INFO:
stderr 2020-11-13T09:32:12.981616:++ first 13 x-planes are zero [from R]
201113-09:32:12,981 nipype.interface INFO:
stderr 2020-11-13T09:32:12.981782:++ last 11 x-planes are zero [from L]
201113-09:32:12,981 nipype.interface INFO:
stderr 2020-11-13T09:32:12.981934:++ first 5 y-planes are zero [from P]
201113-09:32:12,982 nipype.interface INFO:
stderr 2020-11-13T09:32:12.982116:++ last 8 y-planes are zero [from A]
201113-09:32:12,982 nipype.interface INFO:
stderr 2020-11-13T09:32:12.982261:++ first 1 z-planes are zero [from I]
201113-09:32:12,982 nipype.interface INFO:
stderr 2020-11-13T09:32:12.982430:++ last 5 z-planes are zero [from S]
201113-09:32:12,987 nipype.interface INFO:
stderr 2020-11-13T09:32:12.987497:++ Output dataset ./uni_mask.nii.gz
201113-09:32:12,987 nipype.interface INFO:
stderr 2020-11-13T09:32:12.987768:++ applying mask to original data
201113-09:32:12,988 nipype.interface INFO:
stderr 2020-11-13T09:32:12.988787:++ Writing masked data
201113-09:32:13,1 nipype.interface INFO:
stderr 2020-11-13T09:32:13.001316:++ Output dataset ./uni_masked.nii.gz
201113-09:32:13,1 nipype.interface INFO:
stderr 2020-11-13T09:32:13.001897:++ CPU time = 0.000000 sec
201113-09:32:13,235 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:32:13,237 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks".
201113-09:32:13,244 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:32:13,738 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:32:13,740 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/cal_DVARS".
201113-09:32:13,750 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201113-09:32:14,586 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201113-09:32:14,588 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_extract_brain".
201113-09:32:14,597 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt/sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:32:14,858 nipype.interface INFO:
stderr 2020-11-13T09:32:14.858464:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:32:14,859 nipype.interface INFO:
stderr 2020-11-13T09:32:14.859004:++ Authored by: A cast of thousands
201113-09:32:18,360 nipype.interface INFO:
stderr 2020-11-13T09:32:18.360796:++ Output dataset ./sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:32:18,625 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:32:18,626 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize".
201113-09:32:18,634 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_extract_brain/sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201113-09:32:21,77 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:32:21,79 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mask_normalize".
201113-09:32:21,84 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mask_normalize/sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:32:22,458 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:32:22,460 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean".
201113-09:32:22,466 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean/sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:32:22,726 nipype.interface INFO:
stderr 2020-11-13T09:32:22.726299:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:32:22,726 nipype.interface INFO:
stderr 2020-11-13T09:32:22.726739:++ Authored by: KR Hammett & RW Cox
201113-09:32:23,107 nipype.interface INFO:
stderr 2020-11-13T09:32:23.107200:++ Output dataset ./sub-181_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201113-09:32:23,320 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:32:23,321 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/norm_motion_params".
201113-09:32:23,328 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:32:23,570 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:32:23,571 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-2/qc_motion_0/_scan_rest_run-1/motion_plot".
201113-09:32:23,575 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201113-09:32:24,43 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.qc_motion_0.motion_plot".
201113-09:32:24,44 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/sinker_0_qc___movement_trans_plot".
201113-09:32:24,51 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:32:24,263 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc___movement_trans_plot/_scan_rest_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc/movement_trans_plot/_scan_rest_run-1/motion_trans_plot.png
201113-09:32:24,284 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_trans_plot".
201113-09:32:24,286 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/sinker_0_qc___movement_rot_plot".
201113-09:32:24,293 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:32:24,504 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc___movement_rot_plot/_scan_rest_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc/movement_rot_plot/_scan_rest_run-1/motion_rot_plot.png
201113-09:32:24,526 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_rot_plot".
201113-09:32:24,529 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/calc_motion_parameters".
201113-09:32:24,537 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:32:24,776 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201113-09:32:24,778 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/sinker_0_motion_params".
201113-09:32:24,786 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:32:25,18 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_motion_params".
201113-09:32:25,20 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/calculate_FD".
201113-09:32:25,25 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201113-09:32:25,257 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201113-09:32:25,258 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/sinker_0_frame_wise_displacement_power".
201113-09:32:25,265 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:32:25,502 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_power".
201113-09:32:25,504 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/calc_power_parameters".
201113-09:32:25,510 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:32:25,747 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201113-09:32:25,749 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/sinker_0_power_params".
201113-09:32:25,756 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:32:25,994 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_power_params".
201113-09:32:25,996 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/sinker_0_movement_parameters".
201113-09:32:26,3 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:32:26,237 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_movement_parameters".
201113-09:32:26,239 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/func_despiked_0".
201113-09:32:26,245 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-181_ses-2_task-rest_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/func_despiked_0/sub-181_ses-2_task-rest_run-1_bold_calc.nii.gz
201113-09:32:26,521 nipype.interface INFO:
stderr 2020-11-13T09:32:26.520857:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:32:26,521 nipype.interface INFO:
stderr 2020-11-13T09:32:26.521891:++ Authored by: RW Cox
201113-09:32:26,525 nipype.interface INFO:
stderr 2020-11-13T09:32:26.525715:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:32:26,526 nipype.interface INFO:
stderr 2020-11-13T09:32:26.525715: such as /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/func_despiked_0/sub-181_ses-2_task-rest_run-1_bold_calc.nii.gz,
201113-09:32:26,526 nipype.interface INFO:
stderr 2020-11-13T09:32:26.525715: or viewing/combining it with volumes of differing obliquity,
201113-09:32:26,526 nipype.interface INFO:
stderr 2020-11-13T09:32:26.525715: you should consider running:
201113-09:32:26,526 nipype.interface INFO:
stderr 2020-11-13T09:32:26.525715: 3dWarp -deoblique
201113-09:32:26,526 nipype.interface INFO:
stderr 2020-11-13T09:32:26.525715: on this and other oblique datasets in the same session.
201113-09:32:26,526 nipype.interface INFO:
stderr 2020-11-13T09:32:26.525715: See 3dWarp -help for details.
201113-09:32:26,526 nipype.interface INFO:
stderr 2020-11-13T09:32:26.526839:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/func_despiked_0/sub-181_ses-2_task-rest_run-1_bold_calc.nii.gz is 14.900002 degrees from plumb.
201113-09:32:26,527 nipype.interface INFO:
stderr 2020-11-13T09:32:26.527287:++ Input dataset is in short format, but output will be in float format
201113-09:32:26,527 nipype.interface INFO:
stderr 2020-11-13T09:32:26.527464:++ ignoring first 0 time points, using last 180
201113-09:32:26,527 nipype.interface INFO:
stderr 2020-11-13T09:32:26.527636:++ using 180 time points => -corder 6
201113-09:32:26,527 nipype.interface INFO:
stderr 2020-11-13T09:32:26.527799:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/func_despiked_0/sub-181_ses-2_task-rest_run-1_bold_calc.nii.gz
201113-09:32:27,211 nipype.interface INFO:
stderr 2020-11-13T09:32:27.211648:++ 22627 voxels in the automask [out of 135168 in dataset]
201113-09:32:27,217 nipype.interface INFO:
stderr 2020-11-13T09:32:27.217576:++ 42694 voxels in the dilated automask [out of 135168 in dataset]
201113-09:32:27,234 nipype.interface INFO:
stderr 2020-11-13T09:32:27.233956:++ Procesing time series with OLD model fit algorithm
201113-09:32:27,234 nipype.interface INFO:
stderr 2020-11-13T09:32:27.234333:++ smash edit thresholds: 3.1 .. 5.0 MADs
201113-09:32:27,234 nipype.interface INFO:
stderr 2020-11-13T09:32:27.234500: + [ 3.457% .. 0.072% of normal distribution]
201113-09:32:27,234 nipype.interface INFO:
stderr 2020-11-13T09:32:27.234660: + [ 8.839% .. 3.125% of Laplace distribution]
201113-09:32:27,234 nipype.interface INFO:
stderr 2020-11-13T09:32:27.234826:++ start OpenMP thread #0
201113-09:32:35,535 nipype.interface INFO:
stderr 2020-11-13T09:32:35.535670:....................
201113-09:32:35,536 nipype.interface INFO:
stderr 2020-11-13T09:32:35.536104:++ Elapsed despike time = 8s 301ms
201113-09:32:35,536 nipype.interface INFO:
stderr 2020-11-13T09:32:35.536262:
201113-09:32:35,537 nipype.interface INFO:
stderr 2020-11-13T09:32:35.537487:++ FINAL: 7684560 data points, 491871 edits [6.401%], 53250 big edits [0.693%]
201113-09:32:39,629 nipype.interface INFO:
stderr 2020-11-13T09:32:39.629191:++ Output dataset ./sub-181_ses-2_task-rest_run-1_bold_calc_despike.nii.gz
201113-09:32:39,883 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_despiked_0".
201113-09:32:39,885 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_rest_run-1/slice_timing".
201113-09:32:39,894 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:32:39,895 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_rest_run-1/slice_timing/sub-181_ses-2_task-rest_run-1_bold_calc_despike.nii.gz
201113-09:32:40,108 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:32:40,165 nipype.interface INFO:
stderr 2020-11-13T09:32:40.165534:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:32:40,170 nipype.interface INFO:
stderr 2020-11-13T09:32:40.169947:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:32:40,170 nipype.interface INFO:
stderr 2020-11-13T09:32:40.169947: such as /outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_rest_run-1/slice_timing/sub-181_ses-2_task-rest_run-1_bold_calc_despike.nii.gz,
201113-09:32:40,170 nipype.interface INFO:
stderr 2020-11-13T09:32:40.169947: or viewing/combining it with volumes of differing obliquity,
201113-09:32:40,170 nipype.interface INFO:
stderr 2020-11-13T09:32:40.169947: you should consider running:
201113-09:32:40,170 nipype.interface INFO:
stderr 2020-11-13T09:32:40.169947: 3dWarp -deoblique
201113-09:32:40,170 nipype.interface INFO:
stderr 2020-11-13T09:32:40.169947: on this and other oblique datasets in the same session.
201113-09:32:40,170 nipype.interface INFO:
stderr 2020-11-13T09:32:40.169947: See 3dWarp -help for details.
201113-09:32:40,171 nipype.interface INFO:
stderr 2020-11-13T09:32:40.171150:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_rest_run-1/slice_timing/sub-181_ses-2_task-rest_run-1_bold_calc_despike.nii.gz is 14.900002 degrees from plumb.
201113-09:32:45,180 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_slice_timing_correction_0.slice_timing".
201113-09:32:45,182 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique".
201113-09:32:45,243 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift.nii.gz
201113-09:32:45,502 nipype.interface INFO:
stderr 2020-11-13T09:32:45.501978:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:32:45,502 nipype.interface INFO:
stderr 2020-11-13T09:32:45.502504:++ Authored by: RW Cox
201113-09:32:45,512 nipype.interface INFO:
stderr 2020-11-13T09:32:45.512116:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift.nii.gz
201113-09:32:45,513 nipype.interface INFO:
stderr 2020-11-13T09:32:45.513265: + deoblique
201113-09:32:45,513 nipype.interface INFO:
stderr 2020-11-13T09:32:45.513534: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201113-09:32:47,970 nipype.interface INFO:
stderr 2020-11-13T09:32:47.970896:++ 3drefit processed 1 datasets
201113-09:32:48,201 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:32:48,203 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient".
201113-09:32:48,210 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift.nii.gz
201113-09:32:51,445 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:32:51,446 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI".
201113-09:32:51,452 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-09:32:51,710 nipype.interface INFO:
stderr 2020-11-13T09:32:51.710697:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:32:51,711 nipype.interface INFO:
stderr 2020-11-13T09:32:51.711193:++ Authored by: KR Hammett & RW Cox
201113-09:32:52,472 nipype.interface INFO:
stderr 2020-11-13T09:32:52.472336:++ Output dataset ./sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201113-09:32:52,718 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:32:52,720 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_generate_ref".
201113-09:32:52,728 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_generate_ref/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-09:32:52,994 nipype.interface INFO:
stderr 2020-11-13T09:32:52.994477:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:32:52,995 nipype.interface INFO:
stderr 2020-11-13T09:32:52.995169:++ Authored by: RW Cox
201113-09:32:53,5 nipype.interface INFO:
stderr 2020-11-13T09:32:53.005502:++ Coarse del was 10, replaced with 3
201113-09:35:20,734 nipype.interface INFO:
stderr 2020-11-13T09:35:20.734637:++ Max displacement in automask = 0.33 (mm) at sub-brick 87
201113-09:35:20,735 nipype.interface INFO:
stderr 2020-11-13T09:35:20.735262:++ Max delta displ in automask = 0.34 (mm) at sub-brick 87
201113-09:35:27,277 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:35:27,289 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion".
201113-09:35:27,298 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201113-09:35:27,566 nipype.interface INFO:
stderr 2020-11-13T09:35:27.565905:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:35:27,566 nipype.interface INFO:
stderr 2020-11-13T09:35:27.566475:++ Authored by: KR Hammett & RW Cox
201113-09:35:28,641 nipype.interface INFO:
stderr 2020-11-13T09:35:28.641388:++ Output dataset ./sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201113-09:35:28,913 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:35:28,914 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt".
201113-09:35:28,921 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:36:11,409 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:36:11,419 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/sinker_0_motion_correct".
201113-09:36:11,429 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:36:11,664 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_motion_correct".
201113-09:36:11,666 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull".
201113-09:36:11,675 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201113-09:36:11,959 nipype.interface INFO:
stderr 2020-11-13T09:36:11.959587:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:36:11,960 nipype.interface INFO:
stderr 2020-11-13T09:36:11.960196:++ Authored by: KR Hammett & RW Cox
201113-09:36:12,770 nipype.interface INFO:
stderr 2020-11-13T09:36:12.770665:++ Output dataset ./sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201113-09:36:13,13 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:36:13,15 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass".
201113-09:36:13,20 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:36:14,969 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:36:14,971 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate".
201113-09:36:14,978 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:36:15,611 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:36:15,613 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_mask".
201113-09:36:15,620 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_mask/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:36:16,119 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:36:16,121 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/unifize".
201113-09:36:16,126 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/unifize/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:36:16,382 nipype.interface INFO:
stderr 2020-11-13T09:36:16.381979:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:37:15,520 nipype.interface INFO:
stderr 2020-11-13T09:37:15.520584: + Pre-processing: IAV..UW[s3515]Im
201113-09:37:15,533 nipype.interface INFO:
stderr 2020-11-13T09:37:15.533002:++ Output dataset ./uni.nii.gz
201113-09:37:15,533 nipype.interface INFO:
stderr 2020-11-13T09:37:15.533464:++ ===== Elapsed = 59.2 sec
201113-09:37:15,792 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:37:15,794 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass".
201113-09:37:15,801 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:37:16,69 nipype.interface INFO:
stderr 2020-11-13T09:37:16.068905:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:37:16,69 nipype.interface INFO:
stderr 2020-11-13T09:37:16.069875:++ Authored by: Emperor Zhark
201113-09:37:16,73 nipype.interface INFO:
stderr 2020-11-13T09:37:16.073005:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:37:16,78 nipype.interface INFO:
stderr 2020-11-13T09:37:16.078554:++ Forming automask
201113-09:37:16,80 nipype.interface INFO:
stderr 2020-11-13T09:37:16.080012: + Fixed clip level = 437.435669
201113-09:37:16,83 nipype.interface INFO:
stderr 2020-11-13T09:37:16.083172: + Used gradual clip level = 412.950043 .. 490.653503
201113-09:37:16,83 nipype.interface INFO:
stderr 2020-11-13T09:37:16.083395: + Number voxels above clip level = 19471
201113-09:37:16,83 nipype.interface INFO:
stderr 2020-11-13T09:37:16.083550: + Clustering voxels ...
201113-09:37:16,84 nipype.interface INFO:
stderr 2020-11-13T09:37:16.084420: + Largest cluster has 19467 voxels
201113-09:37:16,85 nipype.interface INFO:
stderr 2020-11-13T09:37:16.085663: + Clustering voxels ...
201113-09:37:16,86 nipype.interface INFO:
stderr 2020-11-13T09:37:16.086528: + Largest cluster has 18966 voxels
201113-09:37:16,89 nipype.interface INFO:
stderr 2020-11-13T09:37:16.089819: + Filled 577 voxels in small holes; now have 19543 voxels
201113-09:37:16,93 nipype.interface INFO:
stderr 2020-11-13T09:37:16.093039: + Filled 6 voxels in large holes; now have 19549 voxels
201113-09:37:16,94 nipype.interface INFO:
stderr 2020-11-13T09:37:16.094168: + Clustering voxels ...
201113-09:37:16,95 nipype.interface INFO:
stderr 2020-11-13T09:37:16.095023: + Largest cluster has 19549 voxels
201113-09:37:16,95 nipype.interface INFO:
stderr 2020-11-13T09:37:16.095253: + Clustering non-brain voxels ...
201113-09:37:16,95 nipype.interface INFO:
stderr 2020-11-13T09:37:16.095399: + Clustering voxels ...
201113-09:37:16,98 nipype.interface INFO:
stderr 2020-11-13T09:37:16.098581: + Largest cluster has 115572 voxels
201113-09:37:16,98 nipype.interface INFO:
stderr 2020-11-13T09:37:16.098916: + Mask now has 19596 voxels
201113-09:37:16,99 nipype.interface INFO:
stderr 2020-11-13T09:37:16.099104:++ Dilating automask
201113-09:37:16,105 nipype.interface INFO:
stderr 2020-11-13T09:37:16.105373: + Clustering voxels ...
201113-09:37:16,108 nipype.interface INFO:
stderr 2020-11-13T09:37:16.108154: + Largest cluster has 110944 voxels
201113-09:37:16,108 nipype.interface INFO:
stderr 2020-11-13T09:37:16.108495:++ 24224 voxels in the mask [out of 135168: 17.92%]
201113-09:37:16,108 nipype.interface INFO:
stderr 2020-11-13T09:37:16.108673:++ first 13 x-planes are zero [from R]
201113-09:37:16,108 nipype.interface INFO:
stderr 2020-11-13T09:37:16.108838:++ last 11 x-planes are zero [from L]
201113-09:37:16,109 nipype.interface INFO:
stderr 2020-11-13T09:37:16.109015:++ first 5 y-planes are zero [from P]
201113-09:37:16,109 nipype.interface INFO:
stderr 2020-11-13T09:37:16.109172:++ last 8 y-planes are zero [from A]
201113-09:37:16,109 nipype.interface INFO:
stderr 2020-11-13T09:37:16.109337:++ first 1 z-planes are zero [from I]
201113-09:37:16,109 nipype.interface INFO:
stderr 2020-11-13T09:37:16.109487:++ last 5 z-planes are zero [from S]
201113-09:37:16,113 nipype.interface INFO:
stderr 2020-11-13T09:37:16.113811:++ Output dataset ./uni_mask.nii.gz
201113-09:37:16,114 nipype.interface INFO:
stderr 2020-11-13T09:37:16.114071:++ applying mask to original data
201113-09:37:16,114 nipype.interface INFO:
stderr 2020-11-13T09:37:16.114891:++ Writing masked data
201113-09:37:16,126 nipype.interface INFO:
stderr 2020-11-13T09:37:16.126679:++ Output dataset ./uni_masked.nii.gz
201113-09:37:16,127 nipype.interface INFO:
stderr 2020-11-13T09:37:16.127496:++ CPU time = 0.000000 sec
201113-09:37:16,359 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:37:16,361 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks".
201113-09:37:16,368 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:37:16,870 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:37:16,872 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201113-09:37:16,878 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-09:37:17,114 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201113-09:37:17,140 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201113-09:37:17,147 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:37:17,408 nipype.interface INFO:
stderr 2020-11-13T09:37:17.408676:++ no -frac option: defaulting to -union
201113-09:37:17,409 nipype.interface INFO:
stderr 2020-11-13T09:37:17.409195:++ processing 1 input dataset(s), NN=2...
201113-09:37:17,409 nipype.interface INFO:
stderr 2020-11-13T09:37:17.409373:++ padding all datasets by 0 (for dilations)
201113-09:37:17,414 nipype.interface INFO:
stderr 2020-11-13T09:37:17.414265:++ frac 0 over 1 volumes gives min count 0
201113-09:37:17,414 nipype.interface INFO:
stderr 2020-11-13T09:37:17.414722:++ voxel limits: 0 clipped, 24186 survived, 110982 were zero
201113-09:37:17,414 nipype.interface INFO:
stderr 2020-11-13T09:37:17.414893:++ writing result sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201113-09:37:17,420 nipype.interface INFO:
stderr 2020-11-13T09:37:17.419982:++ Output dataset ./sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201113-09:37:17,655 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201113-09:37:17,656 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/sinker_0_functional_brain_mask".
201113-09:37:17,665 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:37:17,901 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_functional_brain_mask".
201113-09:37:17,903 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/functional_brain_mask_derivative_0".
201113-09:37:17,909 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201113-09:37:18,121 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201113-09:37:18,127 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:37:18,737 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201113-09:37:18,756 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.functional_brain_mask_derivative_0".
201113-09:37:18,757 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_extract_brain".
201113-09:37:18,767 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:37:19,25 nipype.interface INFO:
stderr 2020-11-13T09:37:19.025001:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:37:19,25 nipype.interface INFO:
stderr 2020-11-13T09:37:19.025513:++ Authored by: A cast of thousands
201113-09:37:22,797 nipype.interface INFO:
stderr 2020-11-13T09:37:22.797773:++ Output dataset ./sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:37:23,45 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:37:23,47 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize".
201113-09:37:23,53 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_extract_brain/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201113-09:37:25,640 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:37:25,642 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201113-09:37:25,648 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:37:26,764 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201113-09:37:26,766 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201113-09:37:26,774 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:37:27,36 nipype.interface INFO:
stderr 2020-11-13T09:37:27.036620:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:37:27,37 nipype.interface INFO:
stderr 2020-11-13T09:37:27.037143:++ Authored by: KR Hammett & RW Cox
201113-09:37:27,776 nipype.interface INFO:
stderr 2020-11-13T09:37:27.776852:++ Output dataset ./sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:37:28,37 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.functional_mean".
201113-09:37:28,39 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-181_ses-2/qc_snr_0/_scan_rest_run-1/std_dev".
201113-09:37:28,47 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/qc_snr_0/_scan_rest_run-1/std_dev/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:37:28,306 nipype.interface INFO:
stderr 2020-11-13T09:37:28.306274:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:37:28,306 nipype.interface INFO:
stderr 2020-11-13T09:37:28.306764:++ Authored by: KR Hammett & RW Cox
201113-09:37:28,979 nipype.interface INFO:
stderr 2020-11-13T09:37:28.979380:++ Output dataset ./sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:37:29,244 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.qc_snr_0.std_dev".
201113-09:37:29,245 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/sinker_0_functional_preprocessed".
201113-09:37:29,253 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:37:29,486 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed".
201113-09:37:29,488 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mask_normalize".
201113-09:37:29,494 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mask_normalize/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:37:30,908 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:37:30,911 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/sinker_0_functional_preprocessed_mask".
201113-09:37:30,919 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:37:31,151 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed_mask".
201113-09:37:31,152 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean".
201113-09:37:31,158 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean/sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:37:31,422 nipype.interface INFO:
stderr 2020-11-13T09:37:31.421932:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:37:31,422 nipype.interface INFO:
stderr 2020-11-13T09:37:31.422870:++ Authored by: KR Hammett & RW Cox
201113-09:37:32,142 nipype.interface INFO:
stderr 2020-11-13T09:37:32.142544:++ Output dataset ./sub-181_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201113-09:37:32,374 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:37:32,375 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/sinker_0_mean_functional".
201113-09:37:32,383 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:37:32,623 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_mean_functional".
201113-09:37:32,638 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/norm_motion_params".
201113-09:37:32,645 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:37:32,886 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:37:32,888 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/sinker_0_slice_time_corrected".
201113-09:37:32,896 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:37:33,132 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_slice_time_corrected".
201113-09:37:33,134 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_rest_run-1/sinker_0_raw_functional".
201113-09:37:33,162 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:37:33,549 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_raw_functional".
201113-09:37:33,551 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_rest_run-1/check_func_scan".
201113-09:37:33,588 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201113-09:37:33,826 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.check_func_scan".
201113-09:37:33,838 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_depletion_run-2/select_scan_params".
201113-09:37:33,870 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:37:34,110 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.select_scan_params".
201113-09:37:34,122 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_depletion_run-2/s3_scan_params".
201113-09:37:34,132 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:37:34,367 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.s3_scan_params".
201113-09:37:34,371 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/scan_params_0".
201113-09:37:34,380 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-09:37:34,616 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.scan_params_0".
201113-09:37:34,619 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_depletion_run-2/selectrest".
201113-09:37:34,651 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-09:37:34,893 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.selectrest".
201113-09:37:34,904 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_depletion_run-2/check_for_s3".
201113-09:37:34,910 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-09:37:35,188 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.check_for_s3".
201113-09:37:35,190 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-181_ses-2/edit_func_0/_scan_depletion_run-2/func_get_idx".
201113-09:37:35,196 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-09:37:35,436 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.edit_func_0.func_get_idx".
201113-09:37:35,438 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-181_ses-2/edit_func_0/_scan_depletion_run-2/func_drop_trs".
201113-09:37:35,445 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-181/ses-2/func/sub-181_ses-2_task-depletion_run-2_bold.nii.gz[0..126] -expr "a" -prefix sub-181_ses-2_task-depletion_run-2_bold_calc.nii.gz
201113-09:37:35,716 nipype.interface INFO:
stderr 2020-11-13T09:37:35.716142:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:37:35,716 nipype.interface INFO:
stderr 2020-11-13T09:37:35.716715:++ Authored by: A cast of thousands
201113-09:37:41,748 nipype.interface INFO:
stderr 2020-11-13T09:37:41.748762:++ Output dataset ./sub-181_ses-2_task-depletion_run-2_bold_calc.nii.gz
201113-09:37:42,13 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.edit_func_0.func_drop_trs".
201113-09:37:42,14 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique".
201113-09:37:53,526 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-181_ses-2_task-depletion_run-2_bold_calc.nii.gz
201113-09:37:53,790 nipype.interface INFO:
stderr 2020-11-13T09:37:53.790750:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:37:53,791 nipype.interface INFO:
stderr 2020-11-13T09:37:53.791312:++ Authored by: RW Cox
201113-09:37:53,794 nipype.interface INFO:
stderr 2020-11-13T09:37:53.794659:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-181_ses-2_task-depletion_run-2_bold_calc.nii.gz
201113-09:37:53,795 nipype.interface INFO:
stderr 2020-11-13T09:37:53.795400: + deoblique
201113-09:37:53,795 nipype.interface INFO:
stderr 2020-11-13T09:37:53.795621: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-181_ses-2_task-depletion_run-2_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-181_ses-2_task-depletion_run-2_bold_calc.nii.gz in NIFTI storage)
201113-09:37:57,475 nipype.interface INFO:
stderr 2020-11-13T09:37:57.475209:++ 3drefit processed 1 datasets
201113-09:37:57,689 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:37:57,690 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient".
201113-09:37:57,697 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-2_task-depletion_run-2_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient/sub-181_ses-2_task-depletion_run-2_bold_calc.nii.gz
201113-09:38:02,68 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:38:02,70 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI".
201113-09:38:02,77 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-depletion_run-2_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI/sub-181_ses-2_task-depletion_run-2_bold_calc_resample.nii.gz
201113-09:38:02,337 nipype.interface INFO:
stderr 2020-11-13T09:38:02.337074:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:38:02,337 nipype.interface INFO:
stderr 2020-11-13T09:38:02.337534:++ Authored by: KR Hammett & RW Cox
201113-09:38:02,817 nipype.interface INFO:
stderr 2020-11-13T09:38:02.817390:++ Output dataset ./sub-181_ses-2_task-depletion_run-2_bold_calc_resample_tstat.nii.gz
201113-09:38:03,50 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:38:03,52 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_generate_ref".
201113-09:38:03,60 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-2_task-depletion_run-2_bold_calc_resample.1D -1Dmatrix_save sub-181_ses-2_task-depletion_run-2_bold_calc_resample.aff12.1D -prefix sub-181_ses-2_task-depletion_run-2_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI/sub-181_ses-2_task-depletion_run-2_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-2_task-depletion_run-2_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_generate_ref/sub-181_ses-2_task-depletion_run-2_bold_calc_resample.nii.gz
201113-09:38:03,324 nipype.interface INFO:
stderr 2020-11-13T09:38:03.324304:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:38:03,324 nipype.interface INFO:
stderr 2020-11-13T09:38:03.324775:++ Authored by: RW Cox
201113-09:38:03,335 nipype.interface INFO:
stderr 2020-11-13T09:38:03.335286:++ Coarse del was 10, replaced with 3
201113-09:39:53,180 nipype.interface INFO:
stderr 2020-11-13T09:39:53.180791:++ Max displacement in automask = 1.43 (mm) at sub-brick 126
201113-09:39:53,181 nipype.interface INFO:
stderr 2020-11-13T09:39:53.181428:++ Max delta displ in automask = 1.75 (mm) at sub-brick 126
201113-09:39:56,802 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:39:56,804 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion".
201113-09:39:56,812 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-depletion_run-2_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion/sub-181_ses-2_task-depletion_run-2_bold_calc_resample_volreg.nii.gz
201113-09:39:57,78 nipype.interface INFO:
stderr 2020-11-13T09:39:57.077921:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:39:57,78 nipype.interface INFO:
stderr 2020-11-13T09:39:57.078912:++ Authored by: KR Hammett & RW Cox
201113-09:39:57,562 nipype.interface INFO:
stderr 2020-11-13T09:39:57.561922:++ Output dataset ./sub-181_ses-2_task-depletion_run-2_bold_calc_resample_volreg_tstat.nii.gz
201113-09:39:57,795 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:39:57,796 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt".
201113-09:39:57,804 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient/sub-181_ses-2_task-depletion_run-2_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt/sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion/sub-181_ses-2_task-depletion_run-2_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:40:21,474 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:40:21,484 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/calculate_FDJ".
201113-09:40:21,492 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201113-09:40:21,727 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201113-09:40:21,729 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/sinker_0_frame_wise_displacement_jenkinson".
201113-09:40:21,737 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:40:21,972 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201113-09:40:21,974 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/sinker_0_max_displacement".
201113-09:40:21,983 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:40:22,218 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_max_displacement".
201113-09:40:22,220 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/sinker_0_coordinate_transformation".
201113-09:40:22,243 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:40:22,513 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_coordinate_transformation".
201113-09:40:22,525 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull".
201113-09:40:22,532 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull/sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf.nii.gz
201113-09:40:22,789 nipype.interface INFO:
stderr 2020-11-13T09:40:22.789200:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:40:22,789 nipype.interface INFO:
stderr 2020-11-13T09:40:22.789662:++ Authored by: KR Hammett & RW Cox
201113-09:40:23,309 nipype.interface INFO:
stderr 2020-11-13T09:40:23.308982:++ Output dataset ./sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat.nii.gz
201113-09:40:23,543 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:40:23,544 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass".
201113-09:40:23,551 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull/sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:40:25,520 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:40:25,522 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate".
201113-09:40:25,528 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate/sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:40:26,298 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:40:26,300 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_mask".
201113-09:40:26,307 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate/sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_mask/sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:40:26,825 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:40:26,828 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/unifize".
201113-09:40:26,835 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/unifize/sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:40:27,92 nipype.interface INFO:
stderr 2020-11-13T09:40:27.092398:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:41:49,116 nipype.interface INFO:
stderr 2020-11-13T09:41:49.116632: + Pre-processing: IAV..UW[s4694]Im
201113-09:41:49,132 nipype.interface INFO:
stderr 2020-11-13T09:41:49.132321:++ Output dataset ./uni.nii.gz
201113-09:41:49,132 nipype.interface INFO:
stderr 2020-11-13T09:41:49.132725:++ ===== Elapsed = 82.0 sec
201113-09:41:49,379 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:41:49,380 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass".
201113-09:41:49,388 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni.nii.gz
201113-09:41:49,673 nipype.interface INFO:
stderr 2020-11-13T09:41:49.673393:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:41:49,674 nipype.interface INFO:
stderr 2020-11-13T09:41:49.673980:++ Authored by: Emperor Zhark
201113-09:41:49,676 nipype.interface INFO:
stderr 2020-11-13T09:41:49.676023:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni.nii.gz
201113-09:41:49,680 nipype.interface INFO:
stderr 2020-11-13T09:41:49.680765:++ Forming automask
201113-09:41:49,682 nipype.interface INFO:
stderr 2020-11-13T09:41:49.682816: + Fixed clip level = 404.974152
201113-09:41:49,687 nipype.interface INFO:
stderr 2020-11-13T09:41:49.687590: + Used gradual clip level = 369.197968 .. 489.063080
201113-09:41:49,687 nipype.interface INFO:
stderr 2020-11-13T09:41:49.687957: + Number voxels above clip level = 34271
201113-09:41:49,688 nipype.interface INFO:
stderr 2020-11-13T09:41:49.688118: + Clustering voxels ...
201113-09:41:49,689 nipype.interface INFO:
stderr 2020-11-13T09:41:49.689312: + Largest cluster has 34267 voxels
201113-09:41:49,690 nipype.interface INFO:
stderr 2020-11-13T09:41:49.690743: + Clustering voxels ...
201113-09:41:49,691 nipype.interface INFO:
stderr 2020-11-13T09:41:49.691929: + Largest cluster has 33599 voxels
201113-09:41:49,695 nipype.interface INFO:
stderr 2020-11-13T09:41:49.695323: + Filled 893 voxels in small holes; now have 34492 voxels
201113-09:41:49,698 nipype.interface INFO:
stderr 2020-11-13T09:41:49.698614: + Filled 11 voxels in large holes; now have 34503 voxels
201113-09:41:49,700 nipype.interface INFO:
stderr 2020-11-13T09:41:49.700007: + Clustering voxels ...
201113-09:41:49,701 nipype.interface INFO:
stderr 2020-11-13T09:41:49.701179: + Largest cluster has 34500 voxels
201113-09:41:49,701 nipype.interface INFO:
stderr 2020-11-13T09:41:49.701417: + Clustering non-brain voxels ...
201113-09:41:49,701 nipype.interface INFO:
stderr 2020-11-13T09:41:49.701562: + Clustering voxels ...
201113-09:41:49,704 nipype.interface INFO:
stderr 2020-11-13T09:41:49.704495: + Largest cluster has 104664 voxels
201113-09:41:49,704 nipype.interface INFO:
stderr 2020-11-13T09:41:49.704849: + Mask now has 34600 voxels
201113-09:41:49,705 nipype.interface INFO:
stderr 2020-11-13T09:41:49.705071:++ Dilating automask
201113-09:41:49,714 nipype.interface INFO:
stderr 2020-11-13T09:41:49.714900: + Clustering voxels ...
201113-09:41:49,717 nipype.interface INFO:
stderr 2020-11-13T09:41:49.717580: + Largest cluster has 97890 voxels
201113-09:41:49,718 nipype.interface INFO:
stderr 2020-11-13T09:41:49.718289:++ 41374 voxels in the mask [out of 139264: 29.71%]
201113-09:41:49,718 nipype.interface INFO:
stderr 2020-11-13T09:41:49.718501:++ first 10 x-planes are zero [from R]
201113-09:41:49,718 nipype.interface INFO:
stderr 2020-11-13T09:41:49.718661:++ last 7 x-planes are zero [from L]
201113-09:41:49,718 nipype.interface INFO:
stderr 2020-11-13T09:41:49.718804:++ first 3 y-planes are zero [from P]
201113-09:41:49,718 nipype.interface INFO:
stderr 2020-11-13T09:41:49.718950:++ last 3 y-planes are zero [from A]
201113-09:41:49,719 nipype.interface INFO:
stderr 2020-11-13T09:41:49.719086:++ first 0 z-planes are zero [from I]
201113-09:41:49,719 nipype.interface INFO:
stderr 2020-11-13T09:41:49.719225:++ last 2 z-planes are zero [from S]
201113-09:41:49,724 nipype.interface INFO:
stderr 2020-11-13T09:41:49.724052:++ Output dataset ./uni_mask.nii.gz
201113-09:41:49,724 nipype.interface INFO:
stderr 2020-11-13T09:41:49.724331:++ applying mask to original data
201113-09:41:49,725 nipype.interface INFO:
stderr 2020-11-13T09:41:49.725189:++ Writing masked data
201113-09:41:49,741 nipype.interface INFO:
stderr 2020-11-13T09:41:49.740952:++ Output dataset ./uni_masked.nii.gz
201113-09:41:49,741 nipype.interface INFO:
stderr 2020-11-13T09:41:49.741525:++ CPU time = 0.000000 sec
201113-09:41:49,980 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:41:49,982 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks".
201113-09:41:49,992 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks/sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:41:50,493 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:41:50,495 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/cal_DVARS".
201113-09:41:50,503 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201113-09:41:51,233 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201113-09:41:51,235 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_extract_brain".
201113-09:41:51,243 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt/sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks/sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-09:41:51,501 nipype.interface INFO:
stderr 2020-11-13T09:41:51.501546:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:41:51,502 nipype.interface INFO:
stderr 2020-11-13T09:41:51.502090:++ Authored by: A cast of thousands
201113-09:41:54,360 nipype.interface INFO:
stderr 2020-11-13T09:41:54.360523:++ Output dataset ./sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-09:41:54,634 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:41:54,636 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize".
201113-09:41:54,642 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_extract_brain/sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize/sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201113-09:41:56,916 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:41:56,918 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mask_normalize".
201113-09:41:56,925 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize/sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mask_normalize/sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:41:58,57 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:41:58,59 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mean".
201113-09:41:58,65 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mean/sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-09:41:58,337 nipype.interface INFO:
stderr 2020-11-13T09:41:58.337506:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:41:58,338 nipype.interface INFO:
stderr 2020-11-13T09:41:58.338396:++ Authored by: KR Hammett & RW Cox
201113-09:41:58,657 nipype.interface INFO:
stderr 2020-11-13T09:41:58.657631:++ Output dataset ./sub-181_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz
201113-09:41:58,924 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:41:58,926 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/norm_motion_params".
201113-09:41:58,932 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:41:59,168 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:41:59,170 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-2/qc_motion_0/_scan_depletion_run-2/motion_plot".
201113-09:41:59,175 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201113-09:41:59,625 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.qc_motion_0.motion_plot".
201113-09:41:59,627 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/sinker_0_qc___movement_trans_plot".
201113-09:41:59,635 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:41:59,848 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc___movement_trans_plot/_scan_depletion_run-2/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc/movement_trans_plot/_scan_depletion_run-2/motion_trans_plot.png
201113-09:41:59,871 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_trans_plot".
201113-09:41:59,873 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/sinker_0_qc___movement_rot_plot".
201113-09:41:59,881 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:42:00,94 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc___movement_rot_plot/_scan_depletion_run-2/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc/movement_rot_plot/_scan_depletion_run-2/motion_rot_plot.png
201113-09:42:00,117 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_rot_plot".
201113-09:42:00,122 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/calc_motion_parameters".
201113-09:42:00,130 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:42:00,370 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201113-09:42:00,372 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/sinker_0_motion_params".
201113-09:42:00,380 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:42:00,615 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_motion_params".
201113-09:42:00,617 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/calculate_FD".
201113-09:42:00,622 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201113-09:42:00,856 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201113-09:42:00,857 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/sinker_0_frame_wise_displacement_power".
201113-09:42:00,865 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:42:01,102 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_power".
201113-09:42:01,104 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/calc_power_parameters".
201113-09:42:01,110 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:42:01,342 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201113-09:42:01,344 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/sinker_0_power_params".
201113-09:42:01,351 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:42:01,582 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_power_params".
201113-09:42:01,583 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/sinker_0_movement_parameters".
201113-09:42:01,590 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:42:01,821 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_movement_parameters".
201113-09:42:01,823 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/func_despiked_0".
201113-09:42:01,828 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-181_ses-2_task-depletion_run-2_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/func_despiked_0/sub-181_ses-2_task-depletion_run-2_bold_calc.nii.gz
201113-09:42:02,76 nipype.interface INFO:
stderr 2020-11-13T09:42:02.076020:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:42:02,76 nipype.interface INFO:
stderr 2020-11-13T09:42:02.076408:++ Authored by: RW Cox
201113-09:42:02,78 nipype.interface INFO:
stderr 2020-11-13T09:42:02.078419:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:42:02,78 nipype.interface INFO:
stderr 2020-11-13T09:42:02.078419: such as /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/func_despiked_0/sub-181_ses-2_task-depletion_run-2_bold_calc.nii.gz,
201113-09:42:02,78 nipype.interface INFO:
stderr 2020-11-13T09:42:02.078419: or viewing/combining it with volumes of differing obliquity,
201113-09:42:02,78 nipype.interface INFO:
stderr 2020-11-13T09:42:02.078419: you should consider running:
201113-09:42:02,78 nipype.interface INFO:
stderr 2020-11-13T09:42:02.078419: 3dWarp -deoblique
201113-09:42:02,78 nipype.interface INFO:
stderr 2020-11-13T09:42:02.078419: on this and other oblique datasets in the same session.
201113-09:42:02,79 nipype.interface INFO:
stderr 2020-11-13T09:42:02.078419: See 3dWarp -help for details.
201113-09:42:02,79 nipype.interface INFO:
stderr 2020-11-13T09:42:02.079155:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/func_despiked_0/sub-181_ses-2_task-depletion_run-2_bold_calc.nii.gz is 14.900002 degrees from plumb.
201113-09:42:02,79 nipype.interface INFO:
stderr 2020-11-13T09:42:02.079328:++ Input dataset is in short format, but output will be in float format
201113-09:42:02,79 nipype.interface INFO:
stderr 2020-11-13T09:42:02.079470:++ ignoring first 0 time points, using last 127
201113-09:42:02,79 nipype.interface INFO:
stderr 2020-11-13T09:42:02.079608:++ using 127 time points => -corder 4
201113-09:42:02,79 nipype.interface INFO:
stderr 2020-11-13T09:42:02.079744:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/func_despiked_0/sub-181_ses-2_task-depletion_run-2_bold_calc.nii.gz
201113-09:42:02,557 nipype.interface INFO:
stderr 2020-11-13T09:42:02.557270:++ 38861 voxels in the automask [out of 139264 in dataset]
201113-09:42:02,562 nipype.interface INFO:
stderr 2020-11-13T09:42:02.562827:++ 65881 voxels in the dilated automask [out of 139264 in dataset]
201113-09:42:02,574 nipype.interface INFO:
stderr 2020-11-13T09:42:02.574302:++ Procesing time series with OLD model fit algorithm
201113-09:42:02,574 nipype.interface INFO:
stderr 2020-11-13T09:42:02.574623:++ smash edit thresholds: 3.1 .. 5.0 MADs
201113-09:42:02,574 nipype.interface INFO:
stderr 2020-11-13T09:42:02.574789: + [ 3.457% .. 0.072% of normal distribution]
201113-09:42:02,574 nipype.interface INFO:
stderr 2020-11-13T09:42:02.574950: + [ 8.839% .. 3.125% of Laplace distribution]
201113-09:42:02,575 nipype.interface INFO:
stderr 2020-11-13T09:42:02.575138:++ start OpenMP thread #0
201113-09:42:08,940 nipype.interface INFO:
stderr 2020-11-13T09:42:08.940004:.............................
201113-09:42:08,940 nipype.interface INFO:
stderr 2020-11-13T09:42:08.940439:++ Elapsed despike time = 6s 365ms
201113-09:42:08,940 nipype.interface INFO:
stderr 2020-11-13T09:42:08.940590:
201113-09:42:08,941 nipype.interface INFO:
stderr 2020-11-13T09:42:08.941433:++ FINAL: 8366887 data points, 560431 edits [6.698%], 74700 big edits [0.893%]
201113-09:42:13,725 nipype.interface INFO:
stderr 2020-11-13T09:42:13.725247:++ Output dataset ./sub-181_ses-2_task-depletion_run-2_bold_calc_despike.nii.gz
201113-09:42:13,958 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_despiked_0".
201113-09:42:13,960 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_depletion_run-2/slice_timing".
201113-09:42:13,969 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:42:13,970 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_depletion_run-2/slice_timing/sub-181_ses-2_task-depletion_run-2_bold_calc_despike.nii.gz
201113-09:42:14,182 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:42:14,228 nipype.interface INFO:
stderr 2020-11-13T09:42:14.228228:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:42:14,230 nipype.interface INFO:
stderr 2020-11-13T09:42:14.230897:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:42:14,231 nipype.interface INFO:
stderr 2020-11-13T09:42:14.230897: such as /outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_depletion_run-2/slice_timing/sub-181_ses-2_task-depletion_run-2_bold_calc_despike.nii.gz,
201113-09:42:14,231 nipype.interface INFO:
stderr 2020-11-13T09:42:14.230897: or viewing/combining it with volumes of differing obliquity,
201113-09:42:14,231 nipype.interface INFO:
stderr 2020-11-13T09:42:14.230897: you should consider running:
201113-09:42:14,231 nipype.interface INFO:
stderr 2020-11-13T09:42:14.230897: 3dWarp -deoblique
201113-09:42:14,231 nipype.interface INFO:
stderr 2020-11-13T09:42:14.230897: on this and other oblique datasets in the same session.
201113-09:42:14,231 nipype.interface INFO:
stderr 2020-11-13T09:42:14.230897: See 3dWarp -help for details.
201113-09:42:14,231 nipype.interface INFO:
stderr 2020-11-13T09:42:14.231663:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_depletion_run-2/slice_timing/sub-181_ses-2_task-depletion_run-2_bold_calc_despike.nii.gz is 14.900002 degrees from plumb.
201113-09:42:18,873 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_slice_timing_correction_0.slice_timing".
201113-09:42:18,875 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique".
201113-09:42:18,937 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz
201113-09:42:19,195 nipype.interface INFO:
stderr 2020-11-13T09:42:19.195473:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:42:19,195 nipype.interface INFO:
stderr 2020-11-13T09:42:19.195969:++ Authored by: RW Cox
201113-09:42:19,198 nipype.interface INFO:
stderr 2020-11-13T09:42:19.198006:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz
201113-09:42:19,198 nipype.interface INFO:
stderr 2020-11-13T09:42:19.198620: + deoblique
201113-09:42:19,198 nipype.interface INFO:
stderr 2020-11-13T09:42:19.198802: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201113-09:42:21,568 nipype.interface INFO:
stderr 2020-11-13T09:42:21.567968:++ 3drefit processed 1 datasets
201113-09:42:21,799 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:42:21,801 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient".
201113-09:42:21,809 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz
201113-09:42:24,919 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:42:24,921 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI".
201113-09:42:24,928 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.nii.gz
201113-09:42:25,190 nipype.interface INFO:
stderr 2020-11-13T09:42:25.190644:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:42:25,191 nipype.interface INFO:
stderr 2020-11-13T09:42:25.191401:++ Authored by: KR Hammett & RW Cox
201113-09:42:25,812 nipype.interface INFO:
stderr 2020-11-13T09:42:25.812622:++ Output dataset ./sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz
201113-09:42:26,56 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:42:26,58 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_generate_ref".
201113-09:42:26,67 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_generate_ref/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.nii.gz
201113-09:42:26,337 nipype.interface INFO:
stderr 2020-11-13T09:42:26.337357:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:42:26,338 nipype.interface INFO:
stderr 2020-11-13T09:42:26.337933:++ Authored by: RW Cox
201113-09:42:26,351 nipype.interface INFO:
stderr 2020-11-13T09:42:26.351887:++ Coarse del was 10, replaced with 3
201113-09:44:16,439 nipype.interface INFO:
stderr 2020-11-13T09:44:16.439329:++ Max displacement in automask = 0.83 (mm) at sub-brick 1
201113-09:44:16,440 nipype.interface INFO:
stderr 2020-11-13T09:44:16.440012:++ Max delta displ in automask = 0.43 (mm) at sub-brick 126
201113-09:44:21,282 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:44:21,302 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion".
201113-09:44:21,310 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz
201113-09:44:21,580 nipype.interface INFO:
stderr 2020-11-13T09:44:21.580391:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:44:21,581 nipype.interface INFO:
stderr 2020-11-13T09:44:21.580925:++ Authored by: KR Hammett & RW Cox
201113-09:44:22,379 nipype.interface INFO:
stderr 2020-11-13T09:44:22.379701:++ Output dataset ./sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201113-09:44:22,638 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:44:22,640 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt".
201113-09:44:22,646 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:44:44,398 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:44:44,406 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/sinker_0_motion_correct".
201113-09:44:44,415 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:44:44,651 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_motion_correct".
201113-09:44:44,653 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull".
201113-09:44:44,661 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz
201113-09:44:44,920 nipype.interface INFO:
stderr 2020-11-13T09:44:44.920645:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:44:44,921 nipype.interface INFO:
stderr 2020-11-13T09:44:44.921399:++ Authored by: KR Hammett & RW Cox
201113-09:44:45,571 nipype.interface INFO:
stderr 2020-11-13T09:44:45.571498:++ Output dataset ./sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201113-09:44:45,802 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:44:45,803 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass".
201113-09:44:45,810 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:44:47,762 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:44:47,763 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate".
201113-09:44:47,769 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:44:48,541 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:44:48,542 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_mask".
201113-09:44:48,549 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_mask/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:44:49,72 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:44:49,74 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/unifize".
201113-09:44:49,80 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/unifize/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:44:49,343 nipype.interface INFO:
stderr 2020-11-13T09:44:49.343735:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:46:11,187 nipype.interface INFO:
stderr 2020-11-13T09:46:11.187369: + Pre-processing: IAV..UW[s4706]Im
201113-09:46:11,206 nipype.interface INFO:
stderr 2020-11-13T09:46:11.206459:++ Output dataset ./uni.nii.gz
201113-09:46:11,207 nipype.interface INFO:
stderr 2020-11-13T09:46:11.207214:++ ===== Elapsed = 81.9 sec
201113-09:46:11,475 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:46:11,477 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass".
201113-09:46:11,485 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni.nii.gz
201113-09:46:11,774 nipype.interface INFO:
stderr 2020-11-13T09:46:11.774422:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:46:11,775 nipype.interface INFO:
stderr 2020-11-13T09:46:11.775027:++ Authored by: Emperor Zhark
201113-09:46:11,777 nipype.interface INFO:
stderr 2020-11-13T09:46:11.777290:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni.nii.gz
201113-09:46:11,782 nipype.interface INFO:
stderr 2020-11-13T09:46:11.782000:++ Forming automask
201113-09:46:11,783 nipype.interface INFO:
stderr 2020-11-13T09:46:11.783934: + Fixed clip level = 405.158600
201113-09:46:11,788 nipype.interface INFO:
stderr 2020-11-13T09:46:11.788423: + Used gradual clip level = 369.260529 .. 489.504852
201113-09:46:11,788 nipype.interface INFO:
stderr 2020-11-13T09:46:11.788705: + Number voxels above clip level = 34285
201113-09:46:11,788 nipype.interface INFO:
stderr 2020-11-13T09:46:11.788863: + Clustering voxels ...
201113-09:46:11,790 nipype.interface INFO:
stderr 2020-11-13T09:46:11.790368: + Largest cluster has 34280 voxels
201113-09:46:11,791 nipype.interface INFO:
stderr 2020-11-13T09:46:11.791825: + Clustering voxels ...
201113-09:46:11,793 nipype.interface INFO:
stderr 2020-11-13T09:46:11.793074: + Largest cluster has 33611 voxels
201113-09:46:11,796 nipype.interface INFO:
stderr 2020-11-13T09:46:11.796552: + Filled 886 voxels in small holes; now have 34497 voxels
201113-09:46:11,799 nipype.interface INFO:
stderr 2020-11-13T09:46:11.799814: + Filled 10 voxels in large holes; now have 34507 voxels
201113-09:46:11,801 nipype.interface INFO:
stderr 2020-11-13T09:46:11.801244: + Clustering voxels ...
201113-09:46:11,802 nipype.interface INFO:
stderr 2020-11-13T09:46:11.802426: + Largest cluster has 34503 voxels
201113-09:46:11,802 nipype.interface INFO:
stderr 2020-11-13T09:46:11.802659: + Clustering non-brain voxels ...
201113-09:46:11,802 nipype.interface INFO:
stderr 2020-11-13T09:46:11.802803: + Clustering voxels ...
201113-09:46:11,805 nipype.interface INFO:
stderr 2020-11-13T09:46:11.805779: + Largest cluster has 104661 voxels
201113-09:46:11,806 nipype.interface INFO:
stderr 2020-11-13T09:46:11.806130: + Mask now has 34603 voxels
201113-09:46:11,806 nipype.interface INFO:
stderr 2020-11-13T09:46:11.806290:++ Dilating automask
201113-09:46:11,816 nipype.interface INFO:
stderr 2020-11-13T09:46:11.815918: + Clustering voxels ...
201113-09:46:11,818 nipype.interface INFO:
stderr 2020-11-13T09:46:11.818670: + Largest cluster has 97883 voxels
201113-09:46:11,819 nipype.interface INFO:
stderr 2020-11-13T09:46:11.819078:++ 41381 voxels in the mask [out of 139264: 29.71%]
201113-09:46:11,819 nipype.interface INFO:
stderr 2020-11-13T09:46:11.819259:++ first 10 x-planes are zero [from R]
201113-09:46:11,819 nipype.interface INFO:
stderr 2020-11-13T09:46:11.819424:++ last 7 x-planes are zero [from L]
201113-09:46:11,819 nipype.interface INFO:
stderr 2020-11-13T09:46:11.819569:++ first 3 y-planes are zero [from P]
201113-09:46:11,819 nipype.interface INFO:
stderr 2020-11-13T09:46:11.819715:++ last 3 y-planes are zero [from A]
201113-09:46:11,819 nipype.interface INFO:
stderr 2020-11-13T09:46:11.819851:++ first 0 z-planes are zero [from I]
201113-09:46:11,820 nipype.interface INFO:
stderr 2020-11-13T09:46:11.819998:++ last 2 z-planes are zero [from S]
201113-09:46:11,824 nipype.interface INFO:
stderr 2020-11-13T09:46:11.824747:++ Output dataset ./uni_mask.nii.gz
201113-09:46:11,825 nipype.interface INFO:
stderr 2020-11-13T09:46:11.824986:++ applying mask to original data
201113-09:46:11,825 nipype.interface INFO:
stderr 2020-11-13T09:46:11.825858:++ Writing masked data
201113-09:46:11,841 nipype.interface INFO:
stderr 2020-11-13T09:46:11.841520:++ Output dataset ./uni_masked.nii.gz
201113-09:46:11,842 nipype.interface INFO:
stderr 2020-11-13T09:46:11.842272:++ CPU time = 0.000000 sec
201113-09:46:12,75 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:46:12,76 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks".
201113-09:46:12,83 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:46:12,580 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:46:12,582 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201113-09:46:12,586 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-09:46:12,824 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201113-09:46:12,844 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201113-09:46:12,850 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:46:13,111 nipype.interface INFO:
stderr 2020-11-13T09:46:13.111526:++ no -frac option: defaulting to -union
201113-09:46:13,112 nipype.interface INFO:
stderr 2020-11-13T09:46:13.112068:++ processing 1 input dataset(s), NN=2...
201113-09:46:13,112 nipype.interface INFO:
stderr 2020-11-13T09:46:13.112236:++ padding all datasets by 0 (for dilations)
201113-09:46:13,116 nipype.interface INFO:
stderr 2020-11-13T09:46:13.116814:++ frac 0 over 1 volumes gives min count 0
201113-09:46:13,117 nipype.interface INFO:
stderr 2020-11-13T09:46:13.117812:++ voxel limits: 0 clipped, 41283 survived, 97981 were zero
201113-09:46:13,118 nipype.interface INFO:
stderr 2020-11-13T09:46:13.118033:++ writing result sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201113-09:46:13,123 nipype.interface INFO:
stderr 2020-11-13T09:46:13.123528:++ Output dataset ./sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201113-09:46:13,355 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201113-09:46:13,357 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/sinker_0_functional_brain_mask".
201113-09:46:13,365 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:46:13,604 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_functional_brain_mask".
201113-09:46:13,606 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/functional_brain_mask_derivative_0".
201113-09:46:13,612 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201113-09:46:13,823 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201113-09:46:13,830 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:46:14,405 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201113-09:46:14,423 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.functional_brain_mask_derivative_0".
201113-09:46:14,425 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_extract_brain".
201113-09:46:14,432 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:46:14,689 nipype.interface INFO:
stderr 2020-11-13T09:46:14.689598:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:46:14,690 nipype.interface INFO:
stderr 2020-11-13T09:46:14.690143:++ Authored by: A cast of thousands
201113-09:46:17,899 nipype.interface INFO:
stderr 2020-11-13T09:46:17.899172:++ Output dataset ./sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:46:18,134 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:46:18,135 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize".
201113-09:46:18,141 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_extract_brain/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201113-09:46:20,612 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:46:20,614 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201113-09:46:20,621 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:46:21,602 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201113-09:46:21,604 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201113-09:46:21,611 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:46:21,872 nipype.interface INFO:
stderr 2020-11-13T09:46:21.872049:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:46:21,872 nipype.interface INFO:
stderr 2020-11-13T09:46:21.872512:++ Authored by: KR Hammett & RW Cox
201113-09:46:22,452 nipype.interface INFO:
stderr 2020-11-13T09:46:22.452732:++ Output dataset ./sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:46:22,694 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.functional_mean".
201113-09:46:22,696 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-181_ses-2/qc_snr_0/_scan_depletion_run-2/std_dev".
201113-09:46:22,703 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/qc_snr_0/_scan_depletion_run-2/std_dev/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:46:22,962 nipype.interface INFO:
stderr 2020-11-13T09:46:22.962548:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:46:22,963 nipype.interface INFO:
stderr 2020-11-13T09:46:22.963071:++ Authored by: KR Hammett & RW Cox
201113-09:46:23,501 nipype.interface INFO:
stderr 2020-11-13T09:46:23.501393:++ Output dataset ./sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:46:23,741 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.qc_snr_0.std_dev".
201113-09:46:23,743 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/sinker_0_functional_preprocessed".
201113-09:46:23,751 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:46:23,990 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed".
201113-09:46:23,993 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mask_normalize".
201113-09:46:23,999 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mask_normalize/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:46:25,130 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:46:25,132 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/sinker_0_functional_preprocessed_mask".
201113-09:46:25,141 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:46:25,375 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed_mask".
201113-09:46:25,376 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mean".
201113-09:46:25,383 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mean/sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:46:25,642 nipype.interface INFO:
stderr 2020-11-13T09:46:25.642262:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:46:25,642 nipype.interface INFO:
stderr 2020-11-13T09:46:25.642745:++ Authored by: KR Hammett & RW Cox
201113-09:46:26,206 nipype.interface INFO:
stderr 2020-11-13T09:46:26.206547:++ Output dataset ./sub-181_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201113-09:46:26,448 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:46:26,450 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/sinker_0_mean_functional".
201113-09:46:26,458 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:46:26,700 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_mean_functional".
201113-09:46:26,703 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/norm_motion_params".
201113-09:46:26,710 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:46:26,945 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:46:26,946 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/sinker_0_slice_time_corrected".
201113-09:46:26,953 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:46:27,184 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_slice_time_corrected".
201113-09:46:27,185 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-2/sinker_0_raw_functional".
201113-09:46:27,192 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:46:27,549 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_raw_functional".
201113-09:46:27,552 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_depletion_run-2/check_func_scan".
201113-09:46:27,585 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201113-09:46:27,822 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.check_func_scan".
201113-09:46:27,832 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_depletion_run-1/select_scan_params".
201113-09:46:27,863 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:46:28,101 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.select_scan_params".
201113-09:46:28,112 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_depletion_run-1/s3_scan_params".
201113-09:46:28,122 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:46:28,353 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.s3_scan_params".
201113-09:46:28,356 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/scan_params_0".
201113-09:46:28,365 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-09:46:28,600 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.scan_params_0".
201113-09:46:28,603 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_depletion_run-1/selectrest".
201113-09:46:28,635 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-09:46:28,880 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.selectrest".
201113-09:46:28,890 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_depletion_run-1/check_for_s3".
201113-09:46:28,895 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-09:46:29,189 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.check_for_s3".
201113-09:46:29,190 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-181_ses-2/edit_func_0/_scan_depletion_run-1/func_get_idx".
201113-09:46:29,197 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-09:46:29,433 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.edit_func_0.func_get_idx".
201113-09:46:29,435 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-181_ses-2/edit_func_0/_scan_depletion_run-1/func_drop_trs".
201113-09:46:29,442 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-181/ses-2/func/sub-181_ses-2_task-depletion_run-1_bold.nii.gz[0..126] -expr "a" -prefix sub-181_ses-2_task-depletion_run-1_bold_calc.nii.gz
201113-09:46:29,703 nipype.interface INFO:
stderr 2020-11-13T09:46:29.703253:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:46:29,703 nipype.interface INFO:
stderr 2020-11-13T09:46:29.703781:++ Authored by: A cast of thousands
201113-09:46:35,181 nipype.interface INFO:
stderr 2020-11-13T09:46:35.181680:++ Output dataset ./sub-181_ses-2_task-depletion_run-1_bold_calc.nii.gz
201113-09:46:35,423 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.edit_func_0.func_drop_trs".
201113-09:46:35,425 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique".
201113-09:46:35,475 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-181_ses-2_task-depletion_run-1_bold_calc.nii.gz
201113-09:46:35,730 nipype.interface INFO:
stderr 2020-11-13T09:46:35.730398:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:46:35,730 nipype.interface INFO:
stderr 2020-11-13T09:46:35.730844:++ Authored by: RW Cox
201113-09:46:35,743 nipype.interface INFO:
stderr 2020-11-13T09:46:35.743508:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-181_ses-2_task-depletion_run-1_bold_calc.nii.gz
201113-09:46:35,744 nipype.interface INFO:
stderr 2020-11-13T09:46:35.744476: + deoblique
201113-09:46:35,744 nipype.interface INFO:
stderr 2020-11-13T09:46:35.744760: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-181_ses-2_task-depletion_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-181_ses-2_task-depletion_run-1_bold_calc.nii.gz in NIFTI storage)
201113-09:46:39,368 nipype.interface INFO:
stderr 2020-11-13T09:46:39.367990:++ 3drefit processed 1 datasets
201113-09:46:39,622 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:46:39,624 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_reorient".
201113-09:46:39,629 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-2_task-depletion_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_reorient/sub-181_ses-2_task-depletion_run-1_bold_calc.nii.gz
201113-09:46:43,969 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:46:43,972 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_RPI".
201113-09:46:43,977 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-depletion_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_RPI/sub-181_ses-2_task-depletion_run-1_bold_calc_resample.nii.gz
201113-09:46:44,241 nipype.interface INFO:
stderr 2020-11-13T09:46:44.241738:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:46:44,242 nipype.interface INFO:
stderr 2020-11-13T09:46:44.242594:++ Authored by: KR Hammett & RW Cox
201113-09:46:44,724 nipype.interface INFO:
stderr 2020-11-13T09:46:44.724464:++ Output dataset ./sub-181_ses-2_task-depletion_run-1_bold_calc_resample_tstat.nii.gz
201113-09:46:44,964 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:46:44,966 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_generate_ref".
201113-09:46:44,974 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-2_task-depletion_run-1_bold_calc_resample.1D -1Dmatrix_save sub-181_ses-2_task-depletion_run-1_bold_calc_resample.aff12.1D -prefix sub-181_ses-2_task-depletion_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_RPI/sub-181_ses-2_task-depletion_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-2_task-depletion_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_generate_ref/sub-181_ses-2_task-depletion_run-1_bold_calc_resample.nii.gz
201113-09:46:45,235 nipype.interface INFO:
stderr 2020-11-13T09:46:45.235819:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:46:45,236 nipype.interface INFO:
stderr 2020-11-13T09:46:45.236378:++ Authored by: RW Cox
201113-09:46:45,246 nipype.interface INFO:
stderr 2020-11-13T09:46:45.246474:++ Coarse del was 10, replaced with 3
201113-09:48:35,386 nipype.interface INFO:
stderr 2020-11-13T09:48:35.386303:++ Max displacement in automask = 0.77 (mm) at sub-brick 1
201113-09:48:35,387 nipype.interface INFO:
stderr 2020-11-13T09:48:35.387204:++ Max delta displ in automask = 0.30 (mm) at sub-brick 63
201113-09:48:39,10 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:48:39,12 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_motion".
201113-09:48:39,19 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-depletion_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_motion/sub-181_ses-2_task-depletion_run-1_bold_calc_resample_volreg.nii.gz
201113-09:48:39,286 nipype.interface INFO:
stderr 2020-11-13T09:48:39.286272:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:48:39,286 nipype.interface INFO:
stderr 2020-11-13T09:48:39.286768:++ Authored by: KR Hammett & RW Cox
201113-09:48:39,772 nipype.interface INFO:
stderr 2020-11-13T09:48:39.772599:++ Output dataset ./sub-181_ses-2_task-depletion_run-1_bold_calc_resample_volreg_tstat.nii.gz
201113-09:48:40,10 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:48:40,11 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_motion_correct_mcflirt".
201113-09:48:40,20 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_reorient/sub-181_ses-2_task-depletion_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_motion_correct_mcflirt/sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_motion/sub-181_ses-2_task-depletion_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:49:03,808 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:49:03,817 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/calculate_FDJ".
201113-09:49:03,823 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201113-09:49:04,56 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201113-09:49:04,58 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/sinker_0_frame_wise_displacement_jenkinson".
201113-09:49:04,65 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:49:04,295 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201113-09:49:04,296 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/sinker_0_max_displacement".
201113-09:49:04,306 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:49:04,540 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_max_displacement".
201113-09:49:04,542 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/sinker_0_coordinate_transformation".
201113-09:49:04,561 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:49:04,823 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_coordinate_transformation".
201113-09:49:04,834 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_mean_skull".
201113-09:49:04,842 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_mean_skull/sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf.nii.gz
201113-09:49:05,106 nipype.interface INFO:
stderr 2020-11-13T09:49:05.106299:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:49:05,106 nipype.interface INFO:
stderr 2020-11-13T09:49:05.106774:++ Authored by: KR Hammett & RW Cox
201113-09:49:05,630 nipype.interface INFO:
stderr 2020-11-13T09:49:05.630162:++ Output dataset ./sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat.nii.gz
201113-09:49:05,871 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:49:05,873 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass".
201113-09:49:05,880 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_mean_skull/sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:49:07,835 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:49:07,836 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_dilate".
201113-09:49:07,842 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_dilate/sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:49:08,569 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:49:08,571 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_mask".
201113-09:49:08,578 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_dilate/sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_mask/sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:49:09,88 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:49:09,91 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/unifize".
201113-09:49:09,97 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/unifize/sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:49:09,356 nipype.interface INFO:
stderr 2020-11-13T09:49:09.356242:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:50:30,968 nipype.interface INFO:
stderr 2020-11-13T09:50:30.968253: + Pre-processing: IAV..UW[s4739]Im
201113-09:50:30,984 nipype.interface INFO:
stderr 2020-11-13T09:50:30.984748:++ Output dataset ./uni.nii.gz
201113-09:50:30,985 nipype.interface INFO:
stderr 2020-11-13T09:50:30.985233:++ ===== Elapsed = 81.6 sec
201113-09:50:31,243 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:50:31,245 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass".
201113-09:50:31,252 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:50:31,525 nipype.interface INFO:
stderr 2020-11-13T09:50:31.525265:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:50:31,526 nipype.interface INFO:
stderr 2020-11-13T09:50:31.526042:++ Authored by: Emperor Zhark
201113-09:50:31,528 nipype.interface INFO:
stderr 2020-11-13T09:50:31.528775:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:50:31,534 nipype.interface INFO:
stderr 2020-11-13T09:50:31.533961:++ Forming automask
201113-09:50:31,536 nipype.interface INFO:
stderr 2020-11-13T09:50:31.535983: + Fixed clip level = 406.523163
201113-09:50:31,540 nipype.interface INFO:
stderr 2020-11-13T09:50:31.540340: + Used gradual clip level = 370.906281 .. 485.098633
201113-09:50:31,540 nipype.interface INFO:
stderr 2020-11-13T09:50:31.540639: + Number voxels above clip level = 34239
201113-09:50:31,540 nipype.interface INFO:
stderr 2020-11-13T09:50:31.540796: + Clustering voxels ...
201113-09:50:31,542 nipype.interface INFO:
stderr 2020-11-13T09:50:31.541986: + Largest cluster has 34233 voxels
201113-09:50:31,543 nipype.interface INFO:
stderr 2020-11-13T09:50:31.543420: + Clustering voxels ...
201113-09:50:31,544 nipype.interface INFO:
stderr 2020-11-13T09:50:31.544609: + Largest cluster has 33572 voxels
201113-09:50:31,548 nipype.interface INFO:
stderr 2020-11-13T09:50:31.548060: + Filled 863 voxels in small holes; now have 34435 voxels
201113-09:50:31,550 nipype.interface INFO:
stderr 2020-11-13T09:50:31.550299: + Filled 11 voxels in large holes; now have 34446 voxels
201113-09:50:31,551 nipype.interface INFO:
stderr 2020-11-13T09:50:31.551657: + Clustering voxels ...
201113-09:50:31,552 nipype.interface INFO:
stderr 2020-11-13T09:50:31.552830: + Largest cluster has 34443 voxels
201113-09:50:31,553 nipype.interface INFO:
stderr 2020-11-13T09:50:31.553118: + Clustering non-brain voxels ...
201113-09:50:31,553 nipype.interface INFO:
stderr 2020-11-13T09:50:31.553275: + Clustering voxels ...
201113-09:50:31,556 nipype.interface INFO:
stderr 2020-11-13T09:50:31.556211: + Largest cluster has 104731 voxels
201113-09:50:31,556 nipype.interface INFO:
stderr 2020-11-13T09:50:31.556557: + Mask now has 34533 voxels
201113-09:50:31,556 nipype.interface INFO:
stderr 2020-11-13T09:50:31.556716:++ Dilating automask
201113-09:50:31,567 nipype.interface INFO:
stderr 2020-11-13T09:50:31.567752: + Clustering voxels ...
201113-09:50:31,570 nipype.interface INFO:
stderr 2020-11-13T09:50:31.570415: + Largest cluster has 97881 voxels
201113-09:50:31,570 nipype.interface INFO:
stderr 2020-11-13T09:50:31.570760:++ 41383 voxels in the mask [out of 139264: 29.72%]
201113-09:50:31,570 nipype.interface INFO:
stderr 2020-11-13T09:50:31.570932:++ first 10 x-planes are zero [from R]
201113-09:50:31,571 nipype.interface INFO:
stderr 2020-11-13T09:50:31.571120:++ last 7 x-planes are zero [from L]
201113-09:50:31,571 nipype.interface INFO:
stderr 2020-11-13T09:50:31.571283:++ first 3 y-planes are zero [from P]
201113-09:50:31,571 nipype.interface INFO:
stderr 2020-11-13T09:50:31.571425:++ last 3 y-planes are zero [from A]
201113-09:50:31,571 nipype.interface INFO:
stderr 2020-11-13T09:50:31.571560:++ first 0 z-planes are zero [from I]
201113-09:50:31,571 nipype.interface INFO:
stderr 2020-11-13T09:50:31.571699:++ last 2 z-planes are zero [from S]
201113-09:50:31,576 nipype.interface INFO:
stderr 2020-11-13T09:50:31.576212:++ Output dataset ./uni_mask.nii.gz
201113-09:50:31,576 nipype.interface INFO:
stderr 2020-11-13T09:50:31.576489:++ applying mask to original data
201113-09:50:31,577 nipype.interface INFO:
stderr 2020-11-13T09:50:31.577707:++ Writing masked data
201113-09:50:31,594 nipype.interface INFO:
stderr 2020-11-13T09:50:31.594566:++ Output dataset ./uni_masked.nii.gz
201113-09:50:31,595 nipype.interface INFO:
stderr 2020-11-13T09:50:31.595198:++ CPU time = 0.000000 sec
201113-09:50:31,832 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:50:31,834 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/combine_masks".
201113-09:50:31,841 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/combine_masks/sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:50:32,343 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:50:32,345 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/cal_DVARS".
201113-09:50:32,352 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201113-09:50:33,84 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201113-09:50:33,85 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_extract_brain".
201113-09:50:33,94 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_motion_correct_mcflirt/sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/combine_masks/sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:50:33,354 nipype.interface INFO:
stderr 2020-11-13T09:50:33.354431:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:50:33,354 nipype.interface INFO:
stderr 2020-11-13T09:50:33.354951:++ Authored by: A cast of thousands
201113-09:50:36,218 nipype.interface INFO:
stderr 2020-11-13T09:50:36.217909:++ Output dataset ./sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:50:36,445 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:50:36,447 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_normalize".
201113-09:50:36,454 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_extract_brain/sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_normalize/sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201113-09:50:38,771 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:50:38,773 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mask_normalize".
201113-09:50:38,779 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_normalize/sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mask_normalize/sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:50:39,918 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:50:39,920 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mean".
201113-09:50:39,925 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mean/sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:50:40,194 nipype.interface INFO:
stderr 2020-11-13T09:50:40.194073:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:50:40,194 nipype.interface INFO:
stderr 2020-11-13T09:50:40.194735:++ Authored by: KR Hammett & RW Cox
201113-09:50:40,522 nipype.interface INFO:
stderr 2020-11-13T09:50:40.522287:++ Output dataset ./sub-181_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201113-09:50:40,759 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:50:40,760 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/norm_motion_params".
201113-09:50:40,769 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:50:41,6 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:50:41,8 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-2/qc_motion_0/_scan_depletion_run-1/motion_plot".
201113-09:50:41,13 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201113-09:50:41,470 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.qc_motion_0.motion_plot".
201113-09:50:41,472 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/sinker_0_qc___movement_trans_plot".
201113-09:50:41,479 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:50:41,692 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc___movement_trans_plot/_scan_depletion_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc/movement_trans_plot/_scan_depletion_run-1/motion_trans_plot.png
201113-09:50:41,713 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_trans_plot".
201113-09:50:41,728 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/sinker_0_qc___movement_rot_plot".
201113-09:50:41,735 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:50:41,949 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc___movement_rot_plot/_scan_depletion_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-181_ses-2/qc/movement_rot_plot/_scan_depletion_run-1/motion_rot_plot.png
201113-09:50:41,968 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_qc___movement_rot_plot".
201113-09:50:41,970 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/calc_motion_parameters".
201113-09:50:41,978 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:50:42,212 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201113-09:50:42,213 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/sinker_0_motion_params".
201113-09:50:42,221 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:50:42,450 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_motion_params".
201113-09:50:42,452 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/calculate_FD".
201113-09:50:42,457 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201113-09:50:42,693 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201113-09:50:42,694 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/sinker_0_frame_wise_displacement_power".
201113-09:50:42,701 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:50:42,931 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_frame_wise_displacement_power".
201113-09:50:42,933 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/calc_power_parameters".
201113-09:50:42,939 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:50:43,171 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201113-09:50:43,173 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/sinker_0_power_params".
201113-09:50:43,179 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:50:43,409 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_power_params".
201113-09:50:43,411 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/sinker_0_movement_parameters".
201113-09:50:43,418 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:50:43,649 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_movement_parameters".
201113-09:50:43,651 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/func_despiked_0".
201113-09:50:43,656 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-181_ses-2_task-depletion_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/func_despiked_0/sub-181_ses-2_task-depletion_run-1_bold_calc.nii.gz
201113-09:50:43,927 nipype.interface INFO:
stderr 2020-11-13T09:50:43.927390:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:50:43,928 nipype.interface INFO:
stderr 2020-11-13T09:50:43.927918:++ Authored by: RW Cox
201113-09:50:43,931 nipype.interface INFO:
stderr 2020-11-13T09:50:43.931635:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:50:43,931 nipype.interface INFO:
stderr 2020-11-13T09:50:43.931635: such as /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/func_despiked_0/sub-181_ses-2_task-depletion_run-1_bold_calc.nii.gz,
201113-09:50:43,932 nipype.interface INFO:
stderr 2020-11-13T09:50:43.931635: or viewing/combining it with volumes of differing obliquity,
201113-09:50:43,932 nipype.interface INFO:
stderr 2020-11-13T09:50:43.931635: you should consider running:
201113-09:50:43,932 nipype.interface INFO:
stderr 2020-11-13T09:50:43.931635: 3dWarp -deoblique
201113-09:50:43,932 nipype.interface INFO:
stderr 2020-11-13T09:50:43.931635: on this and other oblique datasets in the same session.
201113-09:50:43,932 nipype.interface INFO:
stderr 2020-11-13T09:50:43.931635: See 3dWarp -help for details.
201113-09:50:43,932 nipype.interface INFO:
stderr 2020-11-13T09:50:43.932825:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/func_despiked_0/sub-181_ses-2_task-depletion_run-1_bold_calc.nii.gz is 14.900002 degrees from plumb.
201113-09:50:43,933 nipype.interface INFO:
stderr 2020-11-13T09:50:43.933094:++ Input dataset is in short format, but output will be in float format
201113-09:50:43,933 nipype.interface INFO:
stderr 2020-11-13T09:50:43.933329:++ ignoring first 0 time points, using last 127
201113-09:50:43,933 nipype.interface INFO:
stderr 2020-11-13T09:50:43.933557:++ using 127 time points => -corder 4
201113-09:50:43,933 nipype.interface INFO:
stderr 2020-11-13T09:50:43.933781:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/func_despiked_0/sub-181_ses-2_task-depletion_run-1_bold_calc.nii.gz
201113-09:50:44,476 nipype.interface INFO:
stderr 2020-11-13T09:50:44.476090:++ 38814 voxels in the automask [out of 139264 in dataset]
201113-09:50:44,482 nipype.interface INFO:
stderr 2020-11-13T09:50:44.481929:++ 65727 voxels in the dilated automask [out of 139264 in dataset]
201113-09:50:44,494 nipype.interface INFO:
stderr 2020-11-13T09:50:44.494114:++ Procesing time series with OLD model fit algorithm
201113-09:50:44,494 nipype.interface INFO:
stderr 2020-11-13T09:50:44.494483:++ smash edit thresholds: 3.1 .. 5.0 MADs
201113-09:50:44,494 nipype.interface INFO:
stderr 2020-11-13T09:50:44.494649: + [ 3.457% .. 0.072% of normal distribution]
201113-09:50:44,494 nipype.interface INFO:
stderr 2020-11-13T09:50:44.494802: + [ 8.839% .. 3.125% of Laplace distribution]
201113-09:50:44,494 nipype.interface INFO:
stderr 2020-11-13T09:50:44.494972:++ start OpenMP thread #0
201113-09:50:50,947 nipype.interface INFO:
stderr 2020-11-13T09:50:50.947676:.............................
201113-09:50:50,948 nipype.interface INFO:
stderr 2020-11-13T09:50:50.948314:++ Elapsed despike time = 6s 453ms
201113-09:50:50,948 nipype.interface INFO:
stderr 2020-11-13T09:50:50.948489:
201113-09:50:50,949 nipype.interface INFO:
stderr 2020-11-13T09:50:50.949304:++ FINAL: 8347329 data points, 545890 edits [6.540%], 60008 big edits [0.719%]
201113-09:50:55,616 nipype.interface INFO:
stderr 2020-11-13T09:50:55.616185:++ Output dataset ./sub-181_ses-2_task-depletion_run-1_bold_calc_despike.nii.gz
201113-09:50:55,877 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_despiked_0".
201113-09:50:55,879 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_depletion_run-1/slice_timing".
201113-09:50:55,888 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:50:55,889 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_depletion_run-1/slice_timing/sub-181_ses-2_task-depletion_run-1_bold_calc_despike.nii.gz
201113-09:50:56,101 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:50:56,160 nipype.interface INFO:
stderr 2020-11-13T09:50:56.160534:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:50:56,165 nipype.interface INFO:
stderr 2020-11-13T09:50:56.164999:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:50:56,165 nipype.interface INFO:
stderr 2020-11-13T09:50:56.164999: such as /outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_depletion_run-1/slice_timing/sub-181_ses-2_task-depletion_run-1_bold_calc_despike.nii.gz,
201113-09:50:56,165 nipype.interface INFO:
stderr 2020-11-13T09:50:56.164999: or viewing/combining it with volumes of differing obliquity,
201113-09:50:56,165 nipype.interface INFO:
stderr 2020-11-13T09:50:56.164999: you should consider running:
201113-09:50:56,165 nipype.interface INFO:
stderr 2020-11-13T09:50:56.164999: 3dWarp -deoblique
201113-09:50:56,165 nipype.interface INFO:
stderr 2020-11-13T09:50:56.164999: on this and other oblique datasets in the same session.
201113-09:50:56,166 nipype.interface INFO:
stderr 2020-11-13T09:50:56.164999: See 3dWarp -help for details.
201113-09:50:56,166 nipype.interface INFO:
stderr 2020-11-13T09:50:56.166302:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-181_ses-2/func_slice_timing_correction_0/_scan_depletion_run-1/slice_timing/sub-181_ses-2_task-depletion_run-1_bold_calc_despike.nii.gz is 14.900002 degrees from plumb.
201113-09:51:00,765 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_slice_timing_correction_0.slice_timing".
201113-09:51:00,767 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique".
201113-09:51:00,831 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift.nii.gz
201113-09:51:01,90 nipype.interface INFO:
stderr 2020-11-13T09:51:01.090623:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:51:01,91 nipype.interface INFO:
stderr 2020-11-13T09:51:01.091151:++ Authored by: RW Cox
201113-09:51:01,103 nipype.interface INFO:
stderr 2020-11-13T09:51:01.103091:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift.nii.gz
201113-09:51:01,104 nipype.interface INFO:
stderr 2020-11-13T09:51:01.104247: + deoblique
201113-09:51:01,104 nipype.interface INFO:
stderr 2020-11-13T09:51:01.104534: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201113-09:51:03,484 nipype.interface INFO:
stderr 2020-11-13T09:51:03.484554:++ 3drefit processed 1 datasets
201113-09:51:03,734 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:51:03,736 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_reorient".
201113-09:51:03,743 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_reorient/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift.nii.gz
201113-09:51:06,786 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:51:06,787 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_RPI".
201113-09:51:06,795 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_RPI/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-09:51:07,62 nipype.interface INFO:
stderr 2020-11-13T09:51:07.062716:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:51:07,63 nipype.interface INFO:
stderr 2020-11-13T09:51:07.063620:++ Authored by: KR Hammett & RW Cox
201113-09:51:07,685 nipype.interface INFO:
stderr 2020-11-13T09:51:07.685794:++ Output dataset ./sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201113-09:51:07,922 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:51:07,925 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_generate_ref".
201113-09:51:07,932 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_RPI/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_generate_ref/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-09:51:08,193 nipype.interface INFO:
stderr 2020-11-13T09:51:08.193532:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:51:08,194 nipype.interface INFO:
stderr 2020-11-13T09:51:08.194152:++ Authored by: RW Cox
201113-09:51:08,202 nipype.interface INFO:
stderr 2020-11-13T09:51:08.202167:++ Coarse del was 10, replaced with 3
201113-09:52:58,173 nipype.interface INFO:
stderr 2020-11-13T09:52:58.173037:++ Max displacement in automask = 0.75 (mm) at sub-brick 1
201113-09:52:58,173 nipype.interface INFO:
stderr 2020-11-13T09:52:58.173690:++ Max delta displ in automask = 0.31 (mm) at sub-brick 63
201113-09:53:02,966 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:53:02,968 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_motion".
201113-09:53:02,975 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_motion/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201113-09:53:03,232 nipype.interface INFO:
stderr 2020-11-13T09:53:03.232029:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:53:03,232 nipype.interface INFO:
stderr 2020-11-13T09:53:03.232438:++ Authored by: KR Hammett & RW Cox
201113-09:53:04,29 nipype.interface INFO:
stderr 2020-11-13T09:53:04.029680:++ Output dataset ./sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201113-09:53:04,264 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:53:04,265 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_motion_correct_mcflirt".
201113-09:53:04,273 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_reorient/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_motion_correct_mcflirt/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_motion/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:53:26,232 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:53:26,241 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/sinker_0_motion_correct".
201113-09:53:26,251 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:53:26,485 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_motion_correct".
201113-09:53:26,487 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_mean_skull".
201113-09:53:26,496 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_mean_skull/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201113-09:53:26,765 nipype.interface INFO:
stderr 2020-11-13T09:53:26.765825:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:53:26,766 nipype.interface INFO:
stderr 2020-11-13T09:53:26.766395:++ Authored by: KR Hammett & RW Cox
201113-09:53:27,421 nipype.interface INFO:
stderr 2020-11-13T09:53:27.421718:++ Output dataset ./sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201113-09:53:27,661 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:53:27,663 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass".
201113-09:53:27,669 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_mean_skull/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:53:29,639 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:53:29,641 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_dilate".
201113-09:53:29,647 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_dilate/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:53:30,401 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:53:30,402 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_mask".
201113-09:53:30,409 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_dilate/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_mask/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:53:30,924 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:53:30,926 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/unifize".
201113-09:53:30,933 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/unifize/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:53:31,191 nipype.interface INFO:
stderr 2020-11-13T09:53:31.191223:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:54:53,183 nipype.interface INFO:
stderr 2020-11-13T09:54:53.183612: + Pre-processing: IAV..UW[s4739]Im
201113-09:54:53,202 nipype.interface INFO:
stderr 2020-11-13T09:54:53.202801:++ Output dataset ./uni.nii.gz
201113-09:54:53,203 nipype.interface INFO:
stderr 2020-11-13T09:54:53.203325:++ ===== Elapsed = 82.0 sec
201113-09:54:53,466 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:54:53,468 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass".
201113-09:54:53,477 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:54:53,748 nipype.interface INFO:
stderr 2020-11-13T09:54:53.747891:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:54:53,748 nipype.interface INFO:
stderr 2020-11-13T09:54:53.748907:++ Authored by: Emperor Zhark
201113-09:54:53,752 nipype.interface INFO:
stderr 2020-11-13T09:54:53.751965:++ Loading dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:54:53,758 nipype.interface INFO:
stderr 2020-11-13T09:54:53.758091:++ Forming automask
201113-09:54:53,759 nipype.interface INFO:
stderr 2020-11-13T09:54:53.759703: + Fixed clip level = 406.552673
201113-09:54:53,763 nipype.interface INFO:
stderr 2020-11-13T09:54:53.763366: + Used gradual clip level = 370.947479 .. 484.954987
201113-09:54:53,763 nipype.interface INFO:
stderr 2020-11-13T09:54:53.763656: + Number voxels above clip level = 34263
201113-09:54:53,763 nipype.interface INFO:
stderr 2020-11-13T09:54:53.763812: + Clustering voxels ...
201113-09:54:53,765 nipype.interface INFO:
stderr 2020-11-13T09:54:53.765235: + Largest cluster has 34258 voxels
201113-09:54:53,766 nipype.interface INFO:
stderr 2020-11-13T09:54:53.766723: + Clustering voxels ...
201113-09:54:53,767 nipype.interface INFO:
stderr 2020-11-13T09:54:53.767929: + Largest cluster has 33594 voxels
201113-09:54:53,771 nipype.interface INFO:
stderr 2020-11-13T09:54:53.771377: + Filled 865 voxels in small holes; now have 34459 voxels
201113-09:54:53,773 nipype.interface INFO:
stderr 2020-11-13T09:54:53.773617: + Filled 11 voxels in large holes; now have 34470 voxels
201113-09:54:53,775 nipype.interface INFO:
stderr 2020-11-13T09:54:53.774986: + Clustering voxels ...
201113-09:54:53,776 nipype.interface INFO:
stderr 2020-11-13T09:54:53.776174: + Largest cluster has 34467 voxels
201113-09:54:53,776 nipype.interface INFO:
stderr 2020-11-13T09:54:53.776408: + Clustering non-brain voxels ...
201113-09:54:53,776 nipype.interface INFO:
stderr 2020-11-13T09:54:53.776553: + Clustering voxels ...
201113-09:54:53,779 nipype.interface INFO:
stderr 2020-11-13T09:54:53.779459: + Largest cluster has 104707 voxels
201113-09:54:53,779 nipype.interface INFO:
stderr 2020-11-13T09:54:53.779806: + Mask now has 34557 voxels
201113-09:54:53,779 nipype.interface INFO:
stderr 2020-11-13T09:54:53.779973:++ Dilating automask
201113-09:54:53,790 nipype.interface INFO:
stderr 2020-11-13T09:54:53.790617: + Clustering voxels ...
201113-09:54:53,793 nipype.interface INFO:
stderr 2020-11-13T09:54:53.793263: + Largest cluster has 97855 voxels
201113-09:54:53,793 nipype.interface INFO:
stderr 2020-11-13T09:54:53.793676:++ 41409 voxels in the mask [out of 139264: 29.73%]
201113-09:54:53,793 nipype.interface INFO:
stderr 2020-11-13T09:54:53.793852:++ first 10 x-planes are zero [from R]
201113-09:54:53,794 nipype.interface INFO:
stderr 2020-11-13T09:54:53.794040:++ last 7 x-planes are zero [from L]
201113-09:54:53,794 nipype.interface INFO:
stderr 2020-11-13T09:54:53.794191:++ first 3 y-planes are zero [from P]
201113-09:54:53,794 nipype.interface INFO:
stderr 2020-11-13T09:54:53.794353:++ last 3 y-planes are zero [from A]
201113-09:54:53,794 nipype.interface INFO:
stderr 2020-11-13T09:54:53.794488:++ first 0 z-planes are zero [from I]
201113-09:54:53,794 nipype.interface INFO:
stderr 2020-11-13T09:54:53.794627:++ last 2 z-planes are zero [from S]
201113-09:54:53,800 nipype.interface INFO:
stderr 2020-11-13T09:54:53.800354:++ Output dataset ./uni_mask.nii.gz
201113-09:54:53,800 nipype.interface INFO:
stderr 2020-11-13T09:54:53.800691:++ applying mask to original data
201113-09:54:53,801 nipype.interface INFO:
stderr 2020-11-13T09:54:53.801749:++ Writing masked data
201113-09:54:53,818 nipype.interface INFO:
stderr 2020-11-13T09:54:53.818290:++ Output dataset ./uni_masked.nii.gz
201113-09:54:53,818 nipype.interface INFO:
stderr 2020-11-13T09:54:53.818849:++ CPU time = 0.000000 sec
201113-09:54:54,56 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:54:54,57 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/combine_masks".
201113-09:54:54,64 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/combine_masks/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:54:54,572 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:54:54,574 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201113-09:54:54,581 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-09:54:54,814 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201113-09:54:54,824 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201113-09:54:54,832 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:54:55,91 nipype.interface INFO:
stderr 2020-11-13T09:54:55.091824:++ no -frac option: defaulting to -union
201113-09:54:55,92 nipype.interface INFO:
stderr 2020-11-13T09:54:55.092773:++ processing 1 input dataset(s), NN=2...
201113-09:54:55,92 nipype.interface INFO:
stderr 2020-11-13T09:54:55.092932:++ padding all datasets by 0 (for dilations)
201113-09:54:55,97 nipype.interface INFO:
stderr 2020-11-13T09:54:55.097623:++ frac 0 over 1 volumes gives min count 0
201113-09:54:55,98 nipype.interface INFO:
stderr 2020-11-13T09:54:55.098128:++ voxel limits: 0 clipped, 41285 survived, 97979 were zero
201113-09:54:55,98 nipype.interface INFO:
stderr 2020-11-13T09:54:55.098301:++ writing result sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201113-09:54:55,103 nipype.interface INFO:
stderr 2020-11-13T09:54:55.103221:++ Output dataset ./sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201113-09:54:55,341 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201113-09:54:55,343 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/sinker_0_functional_brain_mask".
201113-09:54:55,350 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:54:55,586 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_functional_brain_mask".
201113-09:54:55,588 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/functional_brain_mask_derivative_0".
201113-09:54:55,593 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201113-09:54:55,804 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201113-09:54:55,810 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:54:56,385 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201113-09:54:56,401 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.functional_brain_mask_derivative_0".
201113-09:54:56,403 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_extract_brain".
201113-09:54:56,411 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_motion_correct_mcflirt/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/combine_masks/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:54:56,662 nipype.interface INFO:
stderr 2020-11-13T09:54:56.662614:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:54:56,663 nipype.interface INFO:
stderr 2020-11-13T09:54:56.663024:++ Authored by: A cast of thousands
201113-09:54:59,878 nipype.interface INFO:
stderr 2020-11-13T09:54:59.878652:++ Output dataset ./sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:55:00,142 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:55:00,144 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_normalize".
201113-09:55:00,149 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_extract_brain/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_normalize/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201113-09:55:02,600 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:55:02,602 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201113-09:55:02,609 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_normalize/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:55:03,611 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201113-09:55:03,612 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201113-09:55:03,618 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:55:03,887 nipype.interface INFO:
stderr 2020-11-13T09:55:03.887616:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:55:03,888 nipype.interface INFO:
stderr 2020-11-13T09:55:03.888623:++ Authored by: KR Hammett & RW Cox
201113-09:55:04,483 nipype.interface INFO:
stderr 2020-11-13T09:55:04.483344:++ Output dataset ./sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:55:04,752 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.nuisance_regressor_0_0.functional_mean".
201113-09:55:04,754 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-181_ses-2/qc_snr_0/_scan_depletion_run-1/std_dev".
201113-09:55:04,761 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/combine_masks/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/qc_snr_0/_scan_depletion_run-1/std_dev/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:55:05,28 nipype.interface INFO:
stderr 2020-11-13T09:55:05.028386:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:55:05,28 nipype.interface INFO:
stderr 2020-11-13T09:55:05.028917:++ Authored by: KR Hammett & RW Cox
201113-09:55:05,572 nipype.interface INFO:
stderr 2020-11-13T09:55:05.572332:++ Output dataset ./sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:55:05,812 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.qc_snr_0.std_dev".
201113-09:55:05,814 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/sinker_0_functional_preprocessed".
201113-09:55:05,823 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:55:06,62 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed".
201113-09:55:06,65 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mask_normalize".
201113-09:55:06,72 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_normalize/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mask_normalize/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:55:07,193 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:55:07,194 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/sinker_0_functional_preprocessed_mask".
201113-09:55:07,202 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:55:07,437 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_functional_preprocessed_mask".
201113-09:55:07,439 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mean".
201113-09:55:07,446 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mean/sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:55:07,716 nipype.interface INFO:
stderr 2020-11-13T09:55:07.716827:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:55:07,717 nipype.interface INFO:
stderr 2020-11-13T09:55:07.717793:++ Authored by: KR Hammett & RW Cox
201113-09:55:08,283 nipype.interface INFO:
stderr 2020-11-13T09:55:08.283885:++ Output dataset ./sub-181_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201113-09:55:08,524 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:55:08,526 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/sinker_0_mean_functional".
201113-09:55:08,534 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:55:08,774 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_mean_functional".
201113-09:55:08,776 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/norm_motion_params".
201113-09:55:08,784 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:55:09,25 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:55:09,27 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/sinker_0_slice_time_corrected".
201113-09:55:09,35 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:55:09,271 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_slice_time_corrected".
201113-09:55:09,273 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_depletion_run-1/sinker_0_raw_functional".
201113-09:55:09,280 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:55:09,627 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.sinker_0_raw_functional".
201113-09:55:09,629 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_depletion_run-1/check_func_scan".
201113-09:55:09,659 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201113-09:55:09,895 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.check_func_scan".
201113-09:55:09,908 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_conditioning_run-1/select_scan_params".
201113-09:55:09,941 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:55:10,187 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.select_scan_params".
201113-09:55:10,199 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_conditioning_run-1/s3_scan_params".
201113-09:55:10,208 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:55:10,445 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.s3_scan_params".
201113-09:55:10,448 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-181_ses-2/_scan_conditioning_run-1/scan_params_0".
201113-09:55:10,458 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-09:55:10,695 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.scan_params_0".
201113-09:55:10,697 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_conditioning_run-1/selectrest".
201113-09:55:10,729 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-09:55:10,966 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.selectrest".
201113-09:55:10,977 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_gather_0/_scan_conditioning_run-1/check_for_s3".
201113-09:55:10,982 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-09:55:11,268 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_gather_0.check_for_s3".
201113-09:55:11,270 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-181_ses-2/edit_func_0/_scan_conditioning_run-1/func_get_idx".
201113-09:55:11,276 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-09:55:11,515 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.edit_func_0.func_get_idx".
201113-09:55:11,517 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-181_ses-2/edit_func_0/_scan_conditioning_run-1/func_drop_trs".
201113-09:55:11,524 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-181/ses-2/func/sub-181_ses-2_task-conditioning_run-1_bold.nii.gz[0..150] -expr "a" -prefix sub-181_ses-2_task-conditioning_run-1_bold_calc.nii.gz
201113-09:55:11,791 nipype.interface INFO:
stderr 2020-11-13T09:55:11.791148:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:55:11,791 nipype.interface INFO:
stderr 2020-11-13T09:55:11.791739:++ Authored by: A cast of thousands
201113-09:55:18,389 nipype.interface INFO:
stderr 2020-11-13T09:55:18.389482:++ Output dataset ./sub-181_ses-2_task-conditioning_run-1_bold_calc.nii.gz
201113-09:55:18,638 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.edit_func_0.func_drop_trs".
201113-09:55:18,640 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_deoblique".
201113-09:55:18,691 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_deoblique/sub-181_ses-2_task-conditioning_run-1_bold_calc.nii.gz
201113-09:55:18,946 nipype.interface INFO:
stderr 2020-11-13T09:55:18.946491:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:55:18,946 nipype.interface INFO:
stderr 2020-11-13T09:55:18.946970:++ Authored by: RW Cox
201113-09:55:18,950 nipype.interface INFO:
stderr 2020-11-13T09:55:18.950001:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_deoblique/sub-181_ses-2_task-conditioning_run-1_bold_calc.nii.gz
201113-09:55:18,950 nipype.interface INFO:
stderr 2020-11-13T09:55:18.950595: + deoblique
201113-09:55:18,950 nipype.interface INFO:
stderr 2020-11-13T09:55:18.950777: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_deoblique/sub-181_ses-2_task-conditioning_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_deoblique/sub-181_ses-2_task-conditioning_run-1_bold_calc.nii.gz in NIFTI storage)
201113-09:55:23,274 nipype.interface INFO:
stderr 2020-11-13T09:55:23.274804:++ 3drefit processed 1 datasets
201113-09:55:23,535 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:55:23,536 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_reorient".
201113-09:55:23,544 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-181_ses-2_task-conditioning_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_reorient/sub-181_ses-2_task-conditioning_run-1_bold_calc.nii.gz
201113-09:55:28,634 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:55:28,636 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_get_mean_RPI".
201113-09:55:28,643 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-181_ses-2_task-conditioning_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_get_mean_RPI/sub-181_ses-2_task-conditioning_run-1_bold_calc_resample.nii.gz
201113-09:55:28,901 nipype.interface INFO:
stderr 2020-11-13T09:55:28.901861:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:55:28,902 nipype.interface INFO:
stderr 2020-11-13T09:55:28.902379:++ Authored by: KR Hammett & RW Cox
201113-09:55:29,460 nipype.interface INFO:
stderr 2020-11-13T09:55:29.460383:++ Output dataset ./sub-181_ses-2_task-conditioning_run-1_bold_calc_resample_tstat.nii.gz
201113-09:55:29,696 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:55:29,698 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-181_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_generate_ref".
201113-09:55:29,707 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-181_ses-2_task-conditioning_run-1_bold_calc_resample.1D -1Dmatrix_save sub-181_ses-2_task-conditioning_run-1_bold_calc_resample.aff12.1D -prefix sub-181_ses-2_task-conditioning_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_get_mean_RPI/sub-181_ses-2_task-conditioning_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-181_ses-2_task-conditioning_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-181_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_generate_ref/sub-181_ses-2_task-conditioning_run-1_bold_calc_resample.nii.gz
201113-09:55:29,970 nipype.interface INFO:
stderr 2020-11-13T09:55:29.970040:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:55:29,970 nipype.interface INFO:
stderr 2020-11-13T09:55:29.970638:++ Authored by: RW Cox
201113-09:55:29,980 nipype.interface INFO:
stderr 2020-11-13T09:55:29.980819:++ Coarse del was 10, replaced with 3
slurmstepd: error: *** JOB 22509328 ON node055 CANCELLED AT 2020-11-13T09:56:20 DUE TO TIME LIMIT ***