mkdir: cannot create directory ‘/rigel/psych/users/av2902/sb_cpac/preproc/’: File exists
[33mWARNING:[0m skipping mount of /rigel/psych/users/av2902/sb_cpac/scratch: no such file or directory
Running BIDS validator
#### Running C-PAC for sub-128
Number of participants to run in parallel: 1
Input directory: /bids_dataset
Output directory: /outputs/output
Working directory: /outputs/tmp
Crash directory: /outputs/crash
Log directory: /outputs/log
Remove working directory: False
Available memory: 100.0 (GB)
Available threads: 1
Number of threads for ANTs: 1
Parsing /bids_dataset..
Starting participant level processing
Run called with config file /outputs/cpac_pipeline_config_2020-11-12T22-04-12Z.yml
201112-22:04:24,295 nipype.workflow INFO:
C-PAC version: 1.7.2
Setting maximum number of cores per participant to 1
Setting number of participants at once to 1
Setting OMP_NUM_THREADS to 1
Setting MKL_NUM_THREADS to 1
Setting ANTS/ITK thread usage to 1
Maximum potential number of cores that might be used during this run: 1
201112-22:04:28,829 nipype.workflow INFO:
Pipeline building completed.
201112-22:04:28,830 nipype.workflow INFO:
Strategy forks:
- cpac_fmriprep-options
201112-22:04:31,492 nipype.workflow INFO:
Workflow resting_preproc_sub-128_ses-1 settings: ['check', 'execution', 'logging', 'monitoring']
201112-22:04:32,644 nipype.workflow INFO:
Running serially.
201112-22:04:32,654 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_tgng_run-3/select_scan_params".
201112-22:04:32,685 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:04:32,927 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.select_scan_params".
201112-22:04:32,938 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_tgng_run-3/s3_scan_params".
201112-22:04:32,946 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:04:33,183 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.s3_scan_params".
201112-22:04:33,186 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.scan_params_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/scan_params_0".
201112-22:04:33,195 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:04:33,430 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.scan_params_0".
201112-22:04:33,432 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_tgng_run-3/selectrest".
201112-22:04:33,469 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:04:33,706 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.selectrest".
201112-22:04:33,717 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_tgng_run-3/check_for_s3".
201112-22:04:33,722 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:04:34,52 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.check_for_s3".
201112-22:04:34,54 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-128_ses-1/edit_func_0/_scan_tgng_run-3/func_get_idx".
201112-22:04:34,61 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:04:34,295 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.edit_func_0.func_get_idx".
201112-22:04:34,297 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-128_ses-1/edit_func_0/_scan_tgng_run-3/func_drop_trs".
201112-22:04:34,304 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-128/ses-1/func/sub-128_ses-1_task-tgng_run-3_bold.nii.gz[0..129] -expr "a" -prefix sub-128_ses-1_task-tgng_run-3_bold_calc.nii.gz
201112-22:04:34,550 nipype.interface INFO:
stderr 2020-11-12T22:04:34.550027:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:04:34,550 nipype.interface INFO:
stderr 2020-11-12T22:04:34.550849:++ Authored by: A cast of thousands
201112-22:04:40,265 nipype.interface INFO:
stderr 2020-11-12T22:04:40.265730:++ Output dataset ./sub-128_ses-1_task-tgng_run-3_bold_calc.nii.gz
201112-22:04:40,436 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.edit_func_0.func_drop_trs".
201112-22:04:40,440 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique".
201112-22:04:40,484 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-128_ses-1_task-tgng_run-3_bold_calc.nii.gz
201112-22:04:40,753 nipype.interface INFO:
stderr 2020-11-12T22:04:40.753837:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:04:40,754 nipype.interface INFO:
stderr 2020-11-12T22:04:40.754169:++ Authored by: RW Cox
201112-22:04:40,779 nipype.interface INFO:
stderr 2020-11-12T22:04:40.779124:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-128_ses-1_task-tgng_run-3_bold_calc.nii.gz
201112-22:04:40,779 nipype.interface INFO:
stderr 2020-11-12T22:04:40.779724: + deoblique
201112-22:04:40,779 nipype.interface INFO:
stderr 2020-11-12T22:04:40.779901: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-128_ses-1_task-tgng_run-3_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-128_ses-1_task-tgng_run-3_bold_calc.nii.gz in NIFTI storage)
201112-22:04:44,571 nipype.interface INFO:
stderr 2020-11-12T22:04:44.571539:++ 3drefit processed 1 datasets
201112-22:04:44,745 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:04:44,746 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient".
201112-22:04:44,752 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-1_task-tgng_run-3_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient/sub-128_ses-1_task-tgng_run-3_bold_calc.nii.gz
201112-22:04:49,196 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:04:49,197 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI".
201112-22:04:49,205 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-3_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI/sub-128_ses-1_task-tgng_run-3_bold_calc_resample.nii.gz
201112-22:04:49,477 nipype.interface INFO:
stderr 2020-11-12T22:04:49.477067:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:04:49,477 nipype.interface INFO:
stderr 2020-11-12T22:04:49.477369:++ Authored by: KR Hammett & RW Cox
201112-22:04:49,963 nipype.interface INFO:
stderr 2020-11-12T22:04:49.963714:++ Output dataset ./sub-128_ses-1_task-tgng_run-3_bold_calc_resample_tstat.nii.gz
201112-22:04:50,112 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:04:50,113 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_generate_ref".
201112-22:04:50,120 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-1_task-tgng_run-3_bold_calc_resample.1D -1Dmatrix_save sub-128_ses-1_task-tgng_run-3_bold_calc_resample.aff12.1D -prefix sub-128_ses-1_task-tgng_run-3_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI/sub-128_ses-1_task-tgng_run-3_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-1_task-tgng_run-3_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_generate_ref/sub-128_ses-1_task-tgng_run-3_bold_calc_resample.nii.gz
201112-22:04:50,402 nipype.interface INFO:
stderr 2020-11-12T22:04:50.402544:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:04:50,402 nipype.interface INFO:
stderr 2020-11-12T22:04:50.402865:++ Authored by: RW Cox
201112-22:04:50,422 nipype.interface INFO:
stderr 2020-11-12T22:04:50.422272:++ Coarse del was 10, replaced with 3
201112-22:06:37,324 nipype.interface INFO:
stderr 2020-11-12T22:06:37.324642:++ Max displacement in automask = 0.74 (mm) at sub-brick 3
201112-22:06:37,325 nipype.interface INFO:
stderr 2020-11-12T22:06:37.325183:++ Max delta displ in automask = 0.39 (mm) at sub-brick 124
201112-22:06:41,14 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:06:41,17 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion".
201112-22:06:41,25 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-3_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion/sub-128_ses-1_task-tgng_run-3_bold_calc_resample_volreg.nii.gz
201112-22:06:41,277 nipype.interface INFO:
stderr 2020-11-12T22:06:41.277908:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:06:41,278 nipype.interface INFO:
stderr 2020-11-12T22:06:41.278215:++ Authored by: KR Hammett & RW Cox
201112-22:06:41,746 nipype.interface INFO:
stderr 2020-11-12T22:06:41.746153:++ Output dataset ./sub-128_ses-1_task-tgng_run-3_bold_calc_resample_volreg_tstat.nii.gz
201112-22:06:41,891 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:06:41,893 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt".
201112-22:06:41,900 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient/sub-128_ses-1_task-tgng_run-3_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt/sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion/sub-128_ses-1_task-tgng_run-3_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:07:05,645 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:07:05,654 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/calculate_FDJ".
201112-22:07:05,661 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:07:05,889 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:07:05,890 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_frame_wise_displacement_jenkinson".
201112-22:07:05,898 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:07:06,137 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_jenkinson".
201112-22:07:06,139 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_max_displacement".
201112-22:07:06,147 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:07:06,378 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_max_displacement".
201112-22:07:06,380 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_coordinate_transformation".
201112-22:07:06,399 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:07:06,662 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_coordinate_transformation".
201112-22:07:06,672 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull".
201112-22:07:06,679 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull/sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf.nii.gz
201112-22:07:06,933 nipype.interface INFO:
stderr 2020-11-12T22:07:06.933301:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:07:06,934 nipype.interface INFO:
stderr 2020-11-12T22:07:06.934175:++ Authored by: KR Hammett & RW Cox
201112-22:07:07,442 nipype.interface INFO:
stderr 2020-11-12T22:07:07.441977:++ Output dataset ./sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat.nii.gz
201112-22:07:07,585 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:07:07,586 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass".
201112-22:07:07,592 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull/sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:07:09,430 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:07:09,431 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate".
201112-22:07:09,437 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate/sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:07:10,109 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:07:10,111 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_mask".
201112-22:07:10,118 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate/sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_mask/sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:07:10,526 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:07:10,528 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/unifize".
201112-22:07:10,534 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/unifize/sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:07:10,801 nipype.interface INFO:
stderr 2020-11-12T22:07:10.801340:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:08:24,283 nipype.interface INFO:
stderr 2020-11-12T22:08:24.283622: + Pre-processing: IAV..UW[s4797]Im
201112-22:08:24,300 nipype.interface INFO:
stderr 2020-11-12T22:08:24.300243:++ Output dataset ./uni.nii.gz
201112-22:08:24,300 nipype.interface INFO:
stderr 2020-11-12T22:08:24.300486:++ ===== Elapsed = 73.5 sec
201112-22:08:24,468 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:08:24,470 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass".
201112-22:08:24,476 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:08:24,753 nipype.interface INFO:
stderr 2020-11-12T22:08:24.753904:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:08:24,754 nipype.interface INFO:
stderr 2020-11-12T22:08:24.754210:++ Authored by: Emperor Zhark
201112-22:08:24,768 nipype.interface INFO:
stderr 2020-11-12T22:08:24.768519:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:08:24,771 nipype.interface INFO:
stderr 2020-11-12T22:08:24.771912:++ Forming automask
201112-22:08:24,775 nipype.interface INFO:
stderr 2020-11-12T22:08:24.775438: + Fixed clip level = 436.122986
201112-22:08:24,781 nipype.interface INFO:
stderr 2020-11-12T22:08:24.781155: + Used gradual clip level = 368.228668 .. 488.295837
201112-22:08:24,781 nipype.interface INFO:
stderr 2020-11-12T22:08:24.781364: + Number voxels above clip level = 29657
201112-22:08:24,781 nipype.interface INFO:
stderr 2020-11-12T22:08:24.781530: + Clustering voxels ...
201112-22:08:24,782 nipype.interface INFO:
stderr 2020-11-12T22:08:24.782633: + Largest cluster has 29653 voxels
201112-22:08:24,784 nipype.interface INFO:
stderr 2020-11-12T22:08:24.783991: + Clustering voxels ...
201112-22:08:24,785 nipype.interface INFO:
stderr 2020-11-12T22:08:24.785092: + Largest cluster has 29200 voxels
201112-22:08:24,788 nipype.interface INFO:
stderr 2020-11-12T22:08:24.788468: + Filled 912 voxels in small holes; now have 30112 voxels
201112-22:08:24,792 nipype.interface INFO:
stderr 2020-11-12T22:08:24.792714: + Filled 7 voxels in large holes; now have 30119 voxels
201112-22:08:24,793 nipype.interface INFO:
stderr 2020-11-12T22:08:24.793951: + Clustering voxels ...
201112-22:08:24,795 nipype.interface INFO:
stderr 2020-11-12T22:08:24.795028: + Largest cluster has 30118 voxels
201112-22:08:24,795 nipype.interface INFO:
stderr 2020-11-12T22:08:24.795255: + Clustering non-brain voxels ...
201112-22:08:24,795 nipype.interface INFO:
stderr 2020-11-12T22:08:24.795402: + Clustering voxels ...
201112-22:08:24,798 nipype.interface INFO:
stderr 2020-11-12T22:08:24.798234: + Largest cluster has 109088 voxels
201112-22:08:24,798 nipype.interface INFO:
stderr 2020-11-12T22:08:24.798566: + Mask now has 30176 voxels
201112-22:08:24,798 nipype.interface INFO:
stderr 2020-11-12T22:08:24.798718:++ Dilating automask
201112-22:08:24,805 nipype.interface INFO:
stderr 2020-11-12T22:08:24.805139: + Clustering voxels ...
201112-22:08:24,807 nipype.interface INFO:
stderr 2020-11-12T22:08:24.807536: + Largest cluster has 102937 voxels
201112-22:08:24,807 nipype.interface INFO:
stderr 2020-11-12T22:08:24.807868:++ 36327 voxels in the mask [out of 139264: 26.08%]
201112-22:08:24,808 nipype.interface INFO:
stderr 2020-11-12T22:08:24.808038:++ first 10 x-planes are zero [from R]
201112-22:08:24,808 nipype.interface INFO:
stderr 2020-11-12T22:08:24.808198:++ last 8 x-planes are zero [from L]
201112-22:08:24,808 nipype.interface INFO:
stderr 2020-11-12T22:08:24.808339:++ first 4 y-planes are zero [from P]
201112-22:08:24,808 nipype.interface INFO:
stderr 2020-11-12T22:08:24.808495:++ last 8 y-planes are zero [from A]
201112-22:08:24,808 nipype.interface INFO:
stderr 2020-11-12T22:08:24.808629:++ first 0 z-planes are zero [from I]
201112-22:08:24,808 nipype.interface INFO:
stderr 2020-11-12T22:08:24.808763:++ last 1 z-planes are zero [from S]
201112-22:08:24,813 nipype.interface INFO:
stderr 2020-11-12T22:08:24.813213:++ Output dataset ./uni_mask.nii.gz
201112-22:08:24,813 nipype.interface INFO:
stderr 2020-11-12T22:08:24.813406:++ applying mask to original data
201112-22:08:24,814 nipype.interface INFO:
stderr 2020-11-12T22:08:24.814088:++ Writing masked data
201112-22:08:24,828 nipype.interface INFO:
stderr 2020-11-12T22:08:24.828364:++ Output dataset ./uni_masked.nii.gz
201112-22:08:24,828 nipype.interface INFO:
stderr 2020-11-12T22:08:24.828662:++ CPU time = 0.000000 sec
201112-22:08:24,975 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:08:24,977 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks".
201112-22:08:24,983 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:08:25,375 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:08:25,376 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/cal_DVARS".
201112-22:08:25,383 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-22:08:26,84 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-22:08:26,85 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_extract_brain".
201112-22:08:26,93 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt/sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc.nii.gz
201112-22:08:26,333 nipype.interface INFO:
stderr 2020-11-12T22:08:26.333930:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:08:26,334 nipype.interface INFO:
stderr 2020-11-12T22:08:26.334235:++ Authored by: A cast of thousands
201112-22:08:29,105 nipype.interface INFO:
stderr 2020-11-12T22:08:29.104963:++ Output dataset ./sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc.nii.gz
201112-22:08:29,276 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:08:29,278 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize".
201112-22:08:29,283 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_extract_brain/sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize/sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-22:08:31,421 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:08:31,423 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mask_normalize".
201112-22:08:31,429 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize/sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mask_normalize/sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:08:32,436 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:08:32,437 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean".
201112-22:08:32,443 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean/sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc.nii.gz
201112-22:08:32,689 nipype.interface INFO:
stderr 2020-11-12T22:08:32.689051:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:08:32,689 nipype.interface INFO:
stderr 2020-11-12T22:08:32.689740:++ Authored by: KR Hammett & RW Cox
201112-22:08:32,999 nipype.interface INFO:
stderr 2020-11-12T22:08:32.999655:++ Output dataset ./sub-128_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-22:08:33,171 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:08:33,173 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/norm_motion_params".
201112-22:08:33,179 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:08:33,410 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:08:33,411 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_motion_0/_scan_tgng_run-3/motion_plot".
201112-22:08:33,416 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-22:08:33,872 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_motion_0.motion_plot".
201112-22:08:33,873 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_qc___movement_trans_plot".
201112-22:08:33,881 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:08:34,92 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___movement_trans_plot/_scan_tgng_run-3/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/movement_trans_plot/_scan_tgng_run-3/motion_trans_plot.png
201112-22:08:34,109 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_trans_plot".
201112-22:08:34,111 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_qc___movement_rot_plot".
201112-22:08:34,118 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:08:34,330 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___movement_rot_plot/_scan_tgng_run-3/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/movement_rot_plot/_scan_tgng_run-3/motion_rot_plot.png
201112-22:08:34,349 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_rot_plot".
201112-22:08:34,350 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/calc_motion_parameters".
201112-22:08:34,357 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:08:34,593 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-22:08:34,595 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_motion_params".
201112-22:08:34,602 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:08:34,832 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_params".
201112-22:08:34,833 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/calculate_FD".
201112-22:08:34,837 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-22:08:35,71 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-22:08:35,73 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_frame_wise_displacement_power".
201112-22:08:35,80 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:08:35,312 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_power".
201112-22:08:35,314 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/calc_power_parameters".
201112-22:08:35,319 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:08:35,553 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-22:08:35,554 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_power_params".
201112-22:08:35,562 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:08:35,793 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_power_params".
201112-22:08:35,794 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_movement_parameters".
201112-22:08:35,802 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:08:36,31 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_movement_parameters".
201112-22:08:36,33 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/func_despiked_0".
201112-22:08:36,38 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-128_ses-1_task-tgng_run-3_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/func_despiked_0/sub-128_ses-1_task-tgng_run-3_bold_calc.nii.gz
201112-22:08:36,315 nipype.interface INFO:
stderr 2020-11-12T22:08:36.315844:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:08:36,316 nipype.interface INFO:
stderr 2020-11-12T22:08:36.316207:++ Authored by: RW Cox
201112-22:08:36,331 nipype.interface INFO:
stderr 2020-11-12T22:08:36.331726:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:08:36,331 nipype.interface INFO:
stderr 2020-11-12T22:08:36.331726: such as /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/func_despiked_0/sub-128_ses-1_task-tgng_run-3_bold_calc.nii.gz,
201112-22:08:36,332 nipype.interface INFO:
stderr 2020-11-12T22:08:36.331726: or viewing/combining it with volumes of differing obliquity,
201112-22:08:36,332 nipype.interface INFO:
stderr 2020-11-12T22:08:36.331726: you should consider running:
201112-22:08:36,332 nipype.interface INFO:
stderr 2020-11-12T22:08:36.331726: 3dWarp -deoblique
201112-22:08:36,332 nipype.interface INFO:
stderr 2020-11-12T22:08:36.331726: on this and other oblique datasets in the same session.
201112-22:08:36,332 nipype.interface INFO:
stderr 2020-11-12T22:08:36.331726: See 3dWarp -help for details.
201112-22:08:36,332 nipype.interface INFO:
stderr 2020-11-12T22:08:36.332538:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/func_despiked_0/sub-128_ses-1_task-tgng_run-3_bold_calc.nii.gz is 36.026867 degrees from plumb.
201112-22:08:36,332 nipype.interface INFO:
stderr 2020-11-12T22:08:36.332719:++ Input dataset is in short format, but output will be in float format
201112-22:08:36,332 nipype.interface INFO:
stderr 2020-11-12T22:08:36.332882:++ ignoring first 0 time points, using last 130
201112-22:08:36,333 nipype.interface INFO:
stderr 2020-11-12T22:08:36.333043:++ using 130 time points => -corder 4
201112-22:08:36,333 nipype.interface INFO:
stderr 2020-11-12T22:08:36.333199:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/func_despiked_0/sub-128_ses-1_task-tgng_run-3_bold_calc.nii.gz
201112-22:08:36,800 nipype.interface INFO:
stderr 2020-11-12T22:08:36.800038:++ 34201 voxels in the automask [out of 139264 in dataset]
201112-22:08:36,805 nipype.interface INFO:
stderr 2020-11-12T22:08:36.805560:++ 58715 voxels in the dilated automask [out of 139264 in dataset]
201112-22:08:36,816 nipype.interface INFO:
stderr 2020-11-12T22:08:36.816887:++ Procesing time series with OLD model fit algorithm
201112-22:08:36,817 nipype.interface INFO:
stderr 2020-11-12T22:08:36.817069:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-22:08:36,817 nipype.interface INFO:
stderr 2020-11-12T22:08:36.817228: + [ 3.457% .. 0.072% of normal distribution]
201112-22:08:36,818 nipype.interface INFO:
stderr 2020-11-12T22:08:36.818417: + [ 8.839% .. 3.125% of Laplace distribution]
201112-22:08:36,818 nipype.interface INFO:
stderr 2020-11-12T22:08:36.818605:++ start OpenMP thread #0
201112-22:08:42,458 nipype.interface INFO:
stderr 2020-11-12T22:08:42.458531:.........................
201112-22:08:42,459 nipype.interface INFO:
stderr 2020-11-12T22:08:42.458990:++ Elapsed despike time = 5s 641ms
201112-22:08:42,459 nipype.interface INFO:
stderr 2020-11-12T22:08:42.459141:
201112-22:08:42,459 nipype.interface INFO:
stderr 2020-11-12T22:08:42.459968:++ FINAL: 7632950 data points, 496111 edits [6.500%], 57625 big edits [0.755%]
201112-22:08:46,489 nipype.interface INFO:
stderr 2020-11-12T22:08:46.489126:++ Output dataset ./sub-128_ses-1_task-tgng_run-3_bold_calc_despike.nii.gz
201112-22:08:46,672 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_despiked_0".
201112-22:08:46,674 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_tgng_run-3/slice_timing".
201112-22:08:46,682 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:08:46,683 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_tgng_run-3/slice_timing/sub-128_ses-1_task-tgng_run-3_bold_calc_despike.nii.gz
201112-22:08:46,892 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:08:46,952 nipype.interface INFO:
stderr 2020-11-12T22:08:46.952718:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:08:46,967 nipype.interface INFO:
stderr 2020-11-12T22:08:46.966983:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:08:46,967 nipype.interface INFO:
stderr 2020-11-12T22:08:46.966983: such as /outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_tgng_run-3/slice_timing/sub-128_ses-1_task-tgng_run-3_bold_calc_despike.nii.gz,
201112-22:08:46,967 nipype.interface INFO:
stderr 2020-11-12T22:08:46.966983: or viewing/combining it with volumes of differing obliquity,
201112-22:08:46,967 nipype.interface INFO:
stderr 2020-11-12T22:08:46.966983: you should consider running:
201112-22:08:46,967 nipype.interface INFO:
stderr 2020-11-12T22:08:46.966983: 3dWarp -deoblique
201112-22:08:46,967 nipype.interface INFO:
stderr 2020-11-12T22:08:46.966983: on this and other oblique datasets in the same session.
201112-22:08:46,967 nipype.interface INFO:
stderr 2020-11-12T22:08:46.966983: See 3dWarp -help for details.
201112-22:08:46,967 nipype.interface INFO:
stderr 2020-11-12T22:08:46.967694:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_tgng_run-3/slice_timing/sub-128_ses-1_task-tgng_run-3_bold_calc_despike.nii.gz is 36.026867 degrees from plumb.
201112-22:08:51,267 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_slice_timing_correction_0.slice_timing".
201112-22:08:51,269 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique".
201112-22:08:51,326 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift.nii.gz
201112-22:08:51,571 nipype.interface INFO:
stderr 2020-11-12T22:08:51.571695:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:08:51,572 nipype.interface INFO:
stderr 2020-11-12T22:08:51.572278:++ Authored by: RW Cox
201112-22:08:51,582 nipype.interface INFO:
stderr 2020-11-12T22:08:51.582946:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift.nii.gz
201112-22:08:51,583 nipype.interface INFO:
stderr 2020-11-12T22:08:51.583862: + deoblique
201112-22:08:51,584 nipype.interface INFO:
stderr 2020-11-12T22:08:51.584146: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-22:08:53,733 nipype.interface INFO:
stderr 2020-11-12T22:08:53.733859:++ 3drefit processed 1 datasets
201112-22:08:53,904 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:08:53,906 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient".
201112-22:08:53,911 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift.nii.gz
201112-22:08:56,681 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:08:56,683 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI".
201112-22:08:56,689 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample.nii.gz
201112-22:08:56,938 nipype.interface INFO:
stderr 2020-11-12T22:08:56.938253:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:08:56,939 nipype.interface INFO:
stderr 2020-11-12T22:08:56.938991:++ Authored by: KR Hammett & RW Cox
201112-22:08:57,540 nipype.interface INFO:
stderr 2020-11-12T22:08:57.540392:++ Output dataset ./sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-22:08:57,692 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:08:57,694 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_generate_ref".
201112-22:08:57,702 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_generate_ref/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample.nii.gz
201112-22:08:57,944 nipype.interface INFO:
stderr 2020-11-12T22:08:57.944168:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:08:57,944 nipype.interface INFO:
stderr 2020-11-12T22:08:57.944669:++ Authored by: RW Cox
201112-22:08:57,953 nipype.interface INFO:
stderr 2020-11-12T22:08:57.953816:++ Coarse del was 10, replaced with 3
201112-22:10:44,467 nipype.interface INFO:
stderr 2020-11-12T22:10:44.467742:++ Max displacement in automask = 0.71 (mm) at sub-brick 3
201112-22:10:44,469 nipype.interface INFO:
stderr 2020-11-12T22:10:44.469747:++ Max delta displ in automask = 0.34 (mm) at sub-brick 44
201112-22:10:49,129 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:10:49,131 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion".
201112-22:10:49,137 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-22:10:49,388 nipype.interface INFO:
stderr 2020-11-12T22:10:49.388150:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:49,388 nipype.interface INFO:
stderr 2020-11-12T22:10:49.388671:++ Authored by: KR Hammett & RW Cox
201112-22:10:50,182 nipype.interface INFO:
stderr 2020-11-12T22:10:50.182581:++ Output dataset ./sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-22:10:50,325 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:10:50,326 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt".
201112-22:10:50,333 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:11:12,12 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:11:12,22 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_motion_correct".
201112-22:11:12,30 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:11:12,258 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_correct".
201112-22:11:12,260 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull".
201112-22:11:12,267 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-22:11:12,520 nipype.interface INFO:
stderr 2020-11-12T22:11:12.520815:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:11:12,521 nipype.interface INFO:
stderr 2020-11-12T22:11:12.521168:++ Authored by: KR Hammett & RW Cox
201112-22:11:13,163 nipype.interface INFO:
stderr 2020-11-12T22:11:13.163224:++ Output dataset ./sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-22:11:13,315 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:11:13,316 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass".
201112-22:11:13,323 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:11:15,121 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:11:15,122 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate".
201112-22:11:15,130 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:11:15,787 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:11:15,790 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_mask".
201112-22:11:15,797 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_mask/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:11:16,203 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:11:16,204 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/unifize".
201112-22:11:16,210 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/unifize/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:11:16,459 nipype.interface INFO:
stderr 2020-11-12T22:11:16.459610:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:12:30,278 nipype.interface INFO:
stderr 2020-11-12T22:12:30.278079: + Pre-processing: IAV..UW[s4790]Im
201112-22:12:30,292 nipype.interface INFO:
stderr 2020-11-12T22:12:30.292850:++ Output dataset ./uni.nii.gz
201112-22:12:30,293 nipype.interface INFO:
stderr 2020-11-12T22:12:30.293136:++ ===== Elapsed = 73.8 sec
201112-22:12:30,471 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:12:30,473 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass".
201112-22:12:30,480 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:12:30,730 nipype.interface INFO:
stderr 2020-11-12T22:12:30.729916:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:12:30,730 nipype.interface INFO:
stderr 2020-11-12T22:12:30.730340:++ Authored by: Emperor Zhark
201112-22:12:30,733 nipype.interface INFO:
stderr 2020-11-12T22:12:30.733205:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:12:30,739 nipype.interface INFO:
stderr 2020-11-12T22:12:30.739161:++ Forming automask
201112-22:12:30,740 nipype.interface INFO:
stderr 2020-11-12T22:12:30.740914: + Fixed clip level = 435.858276
201112-22:12:30,745 nipype.interface INFO:
stderr 2020-11-12T22:12:30.745341: + Used gradual clip level = 368.271118 .. 488.071320
201112-22:12:30,745 nipype.interface INFO:
stderr 2020-11-12T22:12:30.745609: + Number voxels above clip level = 29664
201112-22:12:30,745 nipype.interface INFO:
stderr 2020-11-12T22:12:30.745805: + Clustering voxels ...
201112-22:12:30,747 nipype.interface INFO:
stderr 2020-11-12T22:12:30.747248: + Largest cluster has 29660 voxels
201112-22:12:30,748 nipype.interface INFO:
stderr 2020-11-12T22:12:30.748946: + Clustering voxels ...
201112-22:12:30,750 nipype.interface INFO:
stderr 2020-11-12T22:12:30.750067: + Largest cluster has 29205 voxels
201112-22:12:30,753 nipype.interface INFO:
stderr 2020-11-12T22:12:30.753639: + Filled 912 voxels in small holes; now have 30117 voxels
201112-22:12:30,757 nipype.interface INFO:
stderr 2020-11-12T22:12:30.757949: + Filled 7 voxels in large holes; now have 30124 voxels
201112-22:12:30,759 nipype.interface INFO:
stderr 2020-11-12T22:12:30.759216: + Clustering voxels ...
201112-22:12:30,760 nipype.interface INFO:
stderr 2020-11-12T22:12:30.760294: + Largest cluster has 30123 voxels
201112-22:12:30,760 nipype.interface INFO:
stderr 2020-11-12T22:12:30.760533: + Clustering non-brain voxels ...
201112-22:12:30,760 nipype.interface INFO:
stderr 2020-11-12T22:12:30.760680: + Clustering voxels ...
201112-22:12:30,763 nipype.interface INFO:
stderr 2020-11-12T22:12:30.763522: + Largest cluster has 109083 voxels
201112-22:12:30,763 nipype.interface INFO:
stderr 2020-11-12T22:12:30.763851: + Mask now has 30181 voxels
201112-22:12:30,764 nipype.interface INFO:
stderr 2020-11-12T22:12:30.764005:++ Dilating automask
201112-22:12:30,770 nipype.interface INFO:
stderr 2020-11-12T22:12:30.770281: + Clustering voxels ...
201112-22:12:30,772 nipype.interface INFO:
stderr 2020-11-12T22:12:30.772665: + Largest cluster has 102929 voxels
201112-22:12:30,773 nipype.interface INFO:
stderr 2020-11-12T22:12:30.772998:++ 36335 voxels in the mask [out of 139264: 26.09%]
201112-22:12:30,773 nipype.interface INFO:
stderr 2020-11-12T22:12:30.773169:++ first 10 x-planes are zero [from R]
201112-22:12:30,773 nipype.interface INFO:
stderr 2020-11-12T22:12:30.773329:++ last 8 x-planes are zero [from L]
201112-22:12:30,773 nipype.interface INFO:
stderr 2020-11-12T22:12:30.773481:++ first 4 y-planes are zero [from P]
201112-22:12:30,773 nipype.interface INFO:
stderr 2020-11-12T22:12:30.773630:++ last 8 y-planes are zero [from A]
201112-22:12:30,773 nipype.interface INFO:
stderr 2020-11-12T22:12:30.773762:++ first 0 z-planes are zero [from I]
201112-22:12:30,773 nipype.interface INFO:
stderr 2020-11-12T22:12:30.773899:++ last 1 z-planes are zero [from S]
201112-22:12:30,777 nipype.interface INFO:
stderr 2020-11-12T22:12:30.777818:++ Output dataset ./uni_mask.nii.gz
201112-22:12:30,778 nipype.interface INFO:
stderr 2020-11-12T22:12:30.778031:++ applying mask to original data
201112-22:12:30,778 nipype.interface INFO:
stderr 2020-11-12T22:12:30.778884:++ Writing masked data
201112-22:12:30,793 nipype.interface INFO:
stderr 2020-11-12T22:12:30.793037:++ Output dataset ./uni_masked.nii.gz
201112-22:12:30,793 nipype.interface INFO:
stderr 2020-11-12T22:12:30.793361:++ CPU time = 0.000000 sec
201112-22:12:30,967 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:12:30,969 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks".
201112-22:12:30,976 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:12:31,372 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:12:31,374 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-22:12:31,379 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-22:12:31,608 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-22:12:31,610 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-22:12:31,616 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:12:31,888 nipype.interface INFO:
stderr 2020-11-12T22:12:31.888394:++ no -frac option: defaulting to -union
201112-22:12:31,888 nipype.interface INFO:
stderr 2020-11-12T22:12:31.888715:++ processing 1 input dataset(s), NN=2...
201112-22:12:31,888 nipype.interface INFO:
stderr 2020-11-12T22:12:31.888877:++ padding all datasets by 0 (for dilations)
201112-22:12:31,901 nipype.interface INFO:
stderr 2020-11-12T22:12:31.901207:++ frac 0 over 1 volumes gives min count 0
201112-22:12:31,901 nipype.interface INFO:
stderr 2020-11-12T22:12:31.901608:++ voxel limits: 0 clipped, 36279 survived, 102985 were zero
201112-22:12:31,901 nipype.interface INFO:
stderr 2020-11-12T22:12:31.901779:++ writing result sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-22:12:31,907 nipype.interface INFO:
stderr 2020-11-12T22:12:31.907731:++ Output dataset ./sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-22:12:32,49 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-22:12:32,50 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_functional_brain_mask".
201112-22:12:32,58 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:12:32,287 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask".
201112-22:12:32,289 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/functional_brain_mask_derivative_0".
201112-22:12:32,294 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-22:12:32,503 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-22:12:32,508 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:12:32,989 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201112-22:12:33,4 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.functional_brain_mask_derivative_0".
201112-22:12:33,6 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_extract_brain".
201112-22:12:33,15 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:12:33,262 nipype.interface INFO:
stderr 2020-11-12T22:12:33.262357:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:12:33,262 nipype.interface INFO:
stderr 2020-11-12T22:12:33.262695:++ Authored by: A cast of thousands
201112-22:12:36,359 nipype.interface INFO:
stderr 2020-11-12T22:12:36.359425:++ Output dataset ./sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:12:36,532 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:12:36,534 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize".
201112-22:12:36,539 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_extract_brain/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-22:12:38,761 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:12:38,763 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-22:12:38,769 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:12:39,673 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_mean".
201112-22:12:39,675 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-22:12:39,681 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:12:39,920 nipype.interface INFO:
stderr 2020-11-12T22:12:39.920345:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:12:39,920 nipype.interface INFO:
stderr 2020-11-12T22:12:39.920889:++ Authored by: KR Hammett & RW Cox
201112-22:12:40,488 nipype.interface INFO:
stderr 2020-11-12T22:12:40.488867:++ Output dataset ./sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:12:40,636 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.functional_mean".
201112-22:12:40,637 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-3/std_dev".
201112-22:12:40,643 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-3/std_dev/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:12:40,889 nipype.interface INFO:
stderr 2020-11-12T22:12:40.889255:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:12:40,889 nipype.interface INFO:
stderr 2020-11-12T22:12:40.889793:++ Authored by: KR Hammett & RW Cox
201112-22:12:41,410 nipype.interface INFO:
stderr 2020-11-12T22:12:41.410733:++ Output dataset ./sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:12:41,560 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev".
201112-22:12:41,562 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_functional_preprocessed".
201112-22:12:41,569 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:12:41,797 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed".
201112-22:12:41,799 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mask_normalize".
201112-22:12:41,804 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mask_normalize/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:12:42,826 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:12:42,828 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_functional_preprocessed_mask".
201112-22:12:42,835 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:12:43,75 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed_mask".
201112-22:12:43,77 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean".
201112-22:12:43,83 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:12:43,329 nipype.interface INFO:
stderr 2020-11-12T22:12:43.329277:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:12:43,330 nipype.interface INFO:
stderr 2020-11-12T22:12:43.330055:++ Authored by: KR Hammett & RW Cox
201112-22:12:43,884 nipype.interface INFO:
stderr 2020-11-12T22:12:43.884149:++ Output dataset ./sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-22:12:44,56 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:12:44,58 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_mean_functional".
201112-22:12:44,65 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:12:44,296 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional".
201112-22:12:44,298 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/norm_motion_params".
201112-22:12:44,304 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:12:44,533 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:12:44,534 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_slice_time_corrected".
201112-22:12:44,541 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:12:44,770 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_slice_time_corrected".
201112-22:12:44,772 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_raw_functional".
201112-22:12:44,782 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:12:45,132 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_raw_functional".
201112-22:12:45,134 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_tgng_run-3/check_func_scan".
201112-22:12:45,168 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:12:45,402 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.check_func_scan".
201112-22:12:45,412 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_tgng_run-2/select_scan_params".
201112-22:12:45,441 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:12:45,673 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.select_scan_params".
201112-22:12:45,683 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_tgng_run-2/s3_scan_params".
201112-22:12:45,692 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:12:45,921 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.s3_scan_params".
201112-22:12:45,924 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.scan_params_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/scan_params_0".
201112-22:12:45,932 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:12:46,160 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.scan_params_0".
201112-22:12:46,163 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_tgng_run-2/selectrest".
201112-22:12:46,194 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:12:46,423 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.selectrest".
201112-22:12:46,431 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_tgng_run-2/check_for_s3".
201112-22:12:46,436 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:12:46,743 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.check_for_s3".
201112-22:12:46,744 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-128_ses-1/edit_func_0/_scan_tgng_run-2/func_get_idx".
201112-22:12:46,750 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:12:46,979 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.edit_func_0.func_get_idx".
201112-22:12:46,981 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-128_ses-1/edit_func_0/_scan_tgng_run-2/func_drop_trs".
201112-22:12:46,988 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-128/ses-1/func/sub-128_ses-1_task-tgng_run-2_bold.nii.gz[0..129] -expr "a" -prefix sub-128_ses-1_task-tgng_run-2_bold_calc.nii.gz
201112-22:12:47,235 nipype.interface INFO:
stderr 2020-11-12T22:12:47.235728:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:12:47,236 nipype.interface INFO:
stderr 2020-11-12T22:12:47.236081:++ Authored by: A cast of thousands
201112-22:12:52,884 nipype.interface INFO:
stderr 2020-11-12T22:12:52.884029:++ Output dataset ./sub-128_ses-1_task-tgng_run-2_bold_calc.nii.gz
201112-22:12:53,59 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.edit_func_0.func_drop_trs".
201112-22:12:53,60 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique".
201112-22:12:53,110 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-128_ses-1_task-tgng_run-2_bold_calc.nii.gz
201112-22:12:53,355 nipype.interface INFO:
stderr 2020-11-12T22:12:53.355341:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:12:53,355 nipype.interface INFO:
stderr 2020-11-12T22:12:53.355941:++ Authored by: RW Cox
201112-22:12:53,368 nipype.interface INFO:
stderr 2020-11-12T22:12:53.367971:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-128_ses-1_task-tgng_run-2_bold_calc.nii.gz
201112-22:12:53,368 nipype.interface INFO:
stderr 2020-11-12T22:12:53.368762: + deoblique
201112-22:12:53,369 nipype.interface INFO:
stderr 2020-11-12T22:12:53.369002: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-128_ses-1_task-tgng_run-2_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-128_ses-1_task-tgng_run-2_bold_calc.nii.gz in NIFTI storage)
201112-22:12:57,144 nipype.interface INFO:
stderr 2020-11-12T22:12:57.144214:++ 3drefit processed 1 datasets
201112-22:12:57,315 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:12:57,316 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient".
201112-22:12:57,323 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-1_task-tgng_run-2_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-128_ses-1_task-tgng_run-2_bold_calc.nii.gz
201112-22:13:01,732 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:13:01,733 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI".
201112-22:13:01,741 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-2_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-128_ses-1_task-tgng_run-2_bold_calc_resample.nii.gz
201112-22:13:01,989 nipype.interface INFO:
stderr 2020-11-12T22:13:01.989186:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:13:01,989 nipype.interface INFO:
stderr 2020-11-12T22:13:01.989750:++ Authored by: KR Hammett & RW Cox
201112-22:13:02,460 nipype.interface INFO:
stderr 2020-11-12T22:13:02.460890:++ Output dataset ./sub-128_ses-1_task-tgng_run-2_bold_calc_resample_tstat.nii.gz
201112-22:13:02,607 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:13:02,609 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref".
201112-22:13:02,616 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-1_task-tgng_run-2_bold_calc_resample.1D -1Dmatrix_save sub-128_ses-1_task-tgng_run-2_bold_calc_resample.aff12.1D -prefix sub-128_ses-1_task-tgng_run-2_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-128_ses-1_task-tgng_run-2_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-1_task-tgng_run-2_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref/sub-128_ses-1_task-tgng_run-2_bold_calc_resample.nii.gz
201112-22:13:02,868 nipype.interface INFO:
stderr 2020-11-12T22:13:02.868791:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:13:02,869 nipype.interface INFO:
stderr 2020-11-12T22:13:02.869205:++ Authored by: RW Cox
201112-22:13:02,883 nipype.interface INFO:
stderr 2020-11-12T22:13:02.883063:++ Coarse del was 10, replaced with 3
201112-22:14:50,3 nipype.interface INFO:
stderr 2020-11-12T22:14:50.003798:++ Max displacement in automask = 5.54 (mm) at sub-brick 129
201112-22:14:50,4 nipype.interface INFO:
stderr 2020-11-12T22:14:50.004779:++ Max delta displ in automask = 5.58 (mm) at sub-brick 129
201112-22:14:53,692 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:14:53,693 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion".
201112-22:14:53,699 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-2_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-128_ses-1_task-tgng_run-2_bold_calc_resample_volreg.nii.gz
201112-22:14:53,950 nipype.interface INFO:
stderr 2020-11-12T22:14:53.949938:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:14:53,950 nipype.interface INFO:
stderr 2020-11-12T22:14:53.950253:++ Authored by: KR Hammett & RW Cox
201112-22:14:54,418 nipype.interface INFO:
stderr 2020-11-12T22:14:54.417952:++ Output dataset ./sub-128_ses-1_task-tgng_run-2_bold_calc_resample_volreg_tstat.nii.gz
201112-22:14:54,565 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:14:54,566 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt".
201112-22:14:54,572 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-128_ses-1_task-tgng_run-2_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-128_ses-1_task-tgng_run-2_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:15:17,743 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:15:17,753 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calculate_FDJ".
201112-22:15:17,759 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:15:17,987 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:15:17,989 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_frame_wise_displacement_jenkinson".
201112-22:15:17,995 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:15:18,228 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_jenkinson".
201112-22:15:18,230 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_max_displacement".
201112-22:15:18,239 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:15:18,471 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_max_displacement".
201112-22:15:18,472 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_coordinate_transformation".
201112-22:15:18,493 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:15:18,760 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_coordinate_transformation".
201112-22:15:18,771 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull".
201112-22:15:18,779 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf.nii.gz
201112-22:15:19,32 nipype.interface INFO:
stderr 2020-11-12T22:15:19.032667:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:15:19,33 nipype.interface INFO:
stderr 2020-11-12T22:15:19.032995:++ Authored by: KR Hammett & RW Cox
201112-22:15:19,537 nipype.interface INFO:
stderr 2020-11-12T22:15:19.537693:++ Output dataset ./sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat.nii.gz
201112-22:15:19,683 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:15:19,684 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass".
201112-22:15:19,690 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:15:21,495 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:15:21,496 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate".
201112-22:15:21,501 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:15:22,154 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:15:22,155 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask".
201112-22:15:22,162 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask/sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:15:22,581 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:15:22,583 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize".
201112-22:15:22,590 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize/sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:15:22,840 nipype.interface INFO:
stderr 2020-11-12T22:15:22.840178:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:16:36,707 nipype.interface INFO:
stderr 2020-11-12T22:16:36.707286: + Pre-processing: IAV..UW[s5146]Im
201112-22:16:36,720 nipype.interface INFO:
stderr 2020-11-12T22:16:36.720894:++ Output dataset ./uni.nii.gz
201112-22:16:36,721 nipype.interface INFO:
stderr 2020-11-12T22:16:36.721175:++ ===== Elapsed = 73.9 sec
201112-22:16:36,897 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:16:36,899 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass".
201112-22:16:36,905 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:16:37,155 nipype.interface INFO:
stderr 2020-11-12T22:16:37.155765:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:16:37,156 nipype.interface INFO:
stderr 2020-11-12T22:16:37.156067:++ Authored by: Emperor Zhark
201112-22:16:37,159 nipype.interface INFO:
stderr 2020-11-12T22:16:37.159011:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:16:37,165 nipype.interface INFO:
stderr 2020-11-12T22:16:37.165261:++ Forming automask
201112-22:16:37,168 nipype.interface INFO:
stderr 2020-11-12T22:16:37.167981: + Fixed clip level = 445.932190
201112-22:16:37,171 nipype.interface INFO:
stderr 2020-11-12T22:16:37.171526: + Used gradual clip level = 371.869232 .. 500.078339
201112-22:16:37,171 nipype.interface INFO:
stderr 2020-11-12T22:16:37.171735: + Number voxels above clip level = 29705
201112-22:16:37,171 nipype.interface INFO:
stderr 2020-11-12T22:16:37.171893: + Clustering voxels ...
201112-22:16:37,173 nipype.interface INFO:
stderr 2020-11-12T22:16:37.172993: + Largest cluster has 29700 voxels
201112-22:16:37,174 nipype.interface INFO:
stderr 2020-11-12T22:16:37.174351: + Clustering voxels ...
201112-22:16:37,175 nipype.interface INFO:
stderr 2020-11-12T22:16:37.175468: + Largest cluster has 29298 voxels
201112-22:16:37,178 nipype.interface INFO:
stderr 2020-11-12T22:16:37.178894: + Filled 846 voxels in small holes; now have 30144 voxels
201112-22:16:37,182 nipype.interface INFO:
stderr 2020-11-12T22:16:37.182143: + Filled 3 voxels in large holes; now have 30147 voxels
201112-22:16:37,183 nipype.interface INFO:
stderr 2020-11-12T22:16:37.183399: + Clustering voxels ...
201112-22:16:37,184 nipype.interface INFO:
stderr 2020-11-12T22:16:37.184751: + Largest cluster has 30145 voxels
201112-22:16:37,185 nipype.interface INFO:
stderr 2020-11-12T22:16:37.184989: + Clustering non-brain voxels ...
201112-22:16:37,185 nipype.interface INFO:
stderr 2020-11-12T22:16:37.185136: + Clustering voxels ...
201112-22:16:37,188 nipype.interface INFO:
stderr 2020-11-12T22:16:37.187997: + Largest cluster has 109069 voxels
201112-22:16:37,188 nipype.interface INFO:
stderr 2020-11-12T22:16:37.188332: + Mask now has 30195 voxels
201112-22:16:37,188 nipype.interface INFO:
stderr 2020-11-12T22:16:37.188495:++ Dilating automask
201112-22:16:37,195 nipype.interface INFO:
stderr 2020-11-12T22:16:37.195466: + Clustering voxels ...
201112-22:16:37,197 nipype.interface INFO:
stderr 2020-11-12T22:16:37.197855: + Largest cluster has 102919 voxels
201112-22:16:37,198 nipype.interface INFO:
stderr 2020-11-12T22:16:37.198191:++ 36345 voxels in the mask [out of 139264: 26.10%]
201112-22:16:37,198 nipype.interface INFO:
stderr 2020-11-12T22:16:37.198361:++ first 10 x-planes are zero [from R]
201112-22:16:37,198 nipype.interface INFO:
stderr 2020-11-12T22:16:37.198533:++ last 8 x-planes are zero [from L]
201112-22:16:37,198 nipype.interface INFO:
stderr 2020-11-12T22:16:37.198676:++ first 4 y-planes are zero [from P]
201112-22:16:37,198 nipype.interface INFO:
stderr 2020-11-12T22:16:37.198825:++ last 8 y-planes are zero [from A]
201112-22:16:37,198 nipype.interface INFO:
stderr 2020-11-12T22:16:37.198959:++ first 0 z-planes are zero [from I]
201112-22:16:37,199 nipype.interface INFO:
stderr 2020-11-12T22:16:37.199094:++ last 1 z-planes are zero [from S]
201112-22:16:37,203 nipype.interface INFO:
stderr 2020-11-12T22:16:37.203224:++ Output dataset ./uni_mask.nii.gz
201112-22:16:37,203 nipype.interface INFO:
stderr 2020-11-12T22:16:37.203405:++ applying mask to original data
201112-22:16:37,204 nipype.interface INFO:
stderr 2020-11-12T22:16:37.204069:++ Writing masked data
201112-22:16:37,217 nipype.interface INFO:
stderr 2020-11-12T22:16:37.217913:++ Output dataset ./uni_masked.nii.gz
201112-22:16:37,218 nipype.interface INFO:
stderr 2020-11-12T22:16:37.218194:++ CPU time = 0.000000 sec
201112-22:16:37,365 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:16:37,366 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks".
201112-22:16:37,373 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:16:37,765 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:16:37,766 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/cal_DVARS".
201112-22:16:37,774 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-22:16:38,468 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-22:16:38,470 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain".
201112-22:16:38,478 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz
201112-22:16:38,719 nipype.interface INFO:
stderr 2020-11-12T22:16:38.719866:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:16:38,720 nipype.interface INFO:
stderr 2020-11-12T22:16:38.720167:++ Authored by: A cast of thousands
201112-22:16:41,472 nipype.interface INFO:
stderr 2020-11-12T22:16:41.472223:++ Output dataset ./sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz
201112-22:16:41,644 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:16:41,645 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize".
201112-22:16:41,651 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain/sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-22:16:43,823 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:16:43,824 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize".
201112-22:16:43,829 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize/sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:16:44,837 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:16:44,838 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean".
201112-22:16:44,844 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz
201112-22:16:45,91 nipype.interface INFO:
stderr 2020-11-12T22:16:45.091162:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:16:45,91 nipype.interface INFO:
stderr 2020-11-12T22:16:45.091823:++ Authored by: KR Hammett & RW Cox
201112-22:16:45,394 nipype.interface INFO:
stderr 2020-11-12T22:16:45.394746:++ Output dataset ./sub-128_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-22:16:45,568 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:16:45,570 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/norm_motion_params".
201112-22:16:45,576 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:16:45,810 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:16:45,811 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_motion_0/_scan_tgng_run-2/motion_plot".
201112-22:16:45,816 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-22:16:46,248 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_motion_0.motion_plot".
201112-22:16:46,249 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_qc___movement_trans_plot".
201112-22:16:46,256 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:16:46,470 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___movement_trans_plot/_scan_tgng_run-2/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/movement_trans_plot/_scan_tgng_run-2/motion_trans_plot.png
201112-22:16:46,486 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_trans_plot".
201112-22:16:46,488 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_qc___movement_rot_plot".
201112-22:16:46,494 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:16:46,702 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___movement_rot_plot/_scan_tgng_run-2/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/movement_rot_plot/_scan_tgng_run-2/motion_rot_plot.png
201112-22:16:46,720 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_rot_plot".
201112-22:16:46,722 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calc_motion_parameters".
201112-22:16:46,729 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:16:46,962 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-22:16:46,964 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_motion_params".
201112-22:16:46,972 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:16:47,200 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_params".
201112-22:16:47,202 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calculate_FD".
201112-22:16:47,205 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-22:16:47,440 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-22:16:47,441 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_frame_wise_displacement_power".
201112-22:16:47,448 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:16:47,678 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_power".
201112-22:16:47,681 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calc_power_parameters".
201112-22:16:47,686 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:16:47,920 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-22:16:47,921 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_power_params".
201112-22:16:47,928 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:16:48,161 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_power_params".
201112-22:16:48,163 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_movement_parameters".
201112-22:16:48,172 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:16:48,403 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_movement_parameters".
201112-22:16:48,404 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/func_despiked_0".
201112-22:16:48,410 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-128_ses-1_task-tgng_run-2_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/func_despiked_0/sub-128_ses-1_task-tgng_run-2_bold_calc.nii.gz
201112-22:16:48,666 nipype.interface INFO:
stderr 2020-11-12T22:16:48.666152:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:16:48,666 nipype.interface INFO:
stderr 2020-11-12T22:16:48.666951:++ Authored by: RW Cox
201112-22:16:48,669 nipype.interface INFO:
stderr 2020-11-12T22:16:48.669495:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:16:48,669 nipype.interface INFO:
stderr 2020-11-12T22:16:48.669495: such as /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/func_despiked_0/sub-128_ses-1_task-tgng_run-2_bold_calc.nii.gz,
201112-22:16:48,669 nipype.interface INFO:
stderr 2020-11-12T22:16:48.669495: or viewing/combining it with volumes of differing obliquity,
201112-22:16:48,669 nipype.interface INFO:
stderr 2020-11-12T22:16:48.669495: you should consider running:
201112-22:16:48,669 nipype.interface INFO:
stderr 2020-11-12T22:16:48.669495: 3dWarp -deoblique
201112-22:16:48,670 nipype.interface INFO:
stderr 2020-11-12T22:16:48.669495: on this and other oblique datasets in the same session.
201112-22:16:48,670 nipype.interface INFO:
stderr 2020-11-12T22:16:48.669495: See 3dWarp -help for details.
201112-22:16:48,670 nipype.interface INFO:
stderr 2020-11-12T22:16:48.670334:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/func_despiked_0/sub-128_ses-1_task-tgng_run-2_bold_calc.nii.gz is 36.026867 degrees from plumb.
201112-22:16:48,670 nipype.interface INFO:
stderr 2020-11-12T22:16:48.670554:++ Input dataset is in short format, but output will be in float format
201112-22:16:48,670 nipype.interface INFO:
stderr 2020-11-12T22:16:48.670746:++ ignoring first 0 time points, using last 130
201112-22:16:48,670 nipype.interface INFO:
stderr 2020-11-12T22:16:48.670916:++ using 130 time points => -corder 4
201112-22:16:48,671 nipype.interface INFO:
stderr 2020-11-12T22:16:48.671081:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/func_despiked_0/sub-128_ses-1_task-tgng_run-2_bold_calc.nii.gz
201112-22:16:49,134 nipype.interface INFO:
stderr 2020-11-12T22:16:49.134572:++ 34268 voxels in the automask [out of 139264 in dataset]
201112-22:16:49,140 nipype.interface INFO:
stderr 2020-11-12T22:16:49.140085:++ 58644 voxels in the dilated automask [out of 139264 in dataset]
201112-22:16:49,150 nipype.interface INFO:
stderr 2020-11-12T22:16:49.150957:++ Procesing time series with OLD model fit algorithm
201112-22:16:49,151 nipype.interface INFO:
stderr 2020-11-12T22:16:49.151143:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-22:16:49,151 nipype.interface INFO:
stderr 2020-11-12T22:16:49.151306: + [ 3.457% .. 0.072% of normal distribution]
201112-22:16:49,151 nipype.interface INFO:
stderr 2020-11-12T22:16:49.151839: + [ 8.839% .. 3.125% of Laplace distribution]
201112-22:16:49,152 nipype.interface INFO:
stderr 2020-11-12T22:16:49.152020:++ start OpenMP thread #0
201112-22:16:55,476 nipype.interface INFO:
stderr 2020-11-12T22:16:55.476245:.........................
201112-22:16:55,476 nipype.interface INFO:
stderr 2020-11-12T22:16:55.476739:++ Elapsed despike time = 6s 324ms
201112-22:16:55,476 nipype.interface INFO:
stderr 2020-11-12T22:16:55.476889:
201112-22:16:55,477 nipype.interface INFO:
stderr 2020-11-12T22:16:55.477726:++ FINAL: 7623720 data points, 623656 edits [8.180%], 183296 big edits [2.404%]
201112-22:16:59,446 nipype.interface INFO:
stderr 2020-11-12T22:16:59.446419:++ Output dataset ./sub-128_ses-1_task-tgng_run-2_bold_calc_despike.nii.gz
201112-22:16:59,632 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_despiked_0".
201112-22:16:59,633 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing".
201112-22:16:59,642 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:16:59,642 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing/sub-128_ses-1_task-tgng_run-2_bold_calc_despike.nii.gz
201112-22:16:59,852 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:16:59,891 nipype.interface INFO:
stderr 2020-11-12T22:16:59.891133:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:16:59,895 nipype.interface INFO:
stderr 2020-11-12T22:16:59.895079:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:16:59,895 nipype.interface INFO:
stderr 2020-11-12T22:16:59.895079: such as /outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing/sub-128_ses-1_task-tgng_run-2_bold_calc_despike.nii.gz,
201112-22:16:59,895 nipype.interface INFO:
stderr 2020-11-12T22:16:59.895079: or viewing/combining it with volumes of differing obliquity,
201112-22:16:59,895 nipype.interface INFO:
stderr 2020-11-12T22:16:59.895079: you should consider running:
201112-22:16:59,895 nipype.interface INFO:
stderr 2020-11-12T22:16:59.895079: 3dWarp -deoblique
201112-22:16:59,896 nipype.interface INFO:
stderr 2020-11-12T22:16:59.895079: on this and other oblique datasets in the same session.
201112-22:16:59,896 nipype.interface INFO:
stderr 2020-11-12T22:16:59.895079: See 3dWarp -help for details.
201112-22:16:59,896 nipype.interface INFO:
stderr 2020-11-12T22:16:59.896438:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing/sub-128_ses-1_task-tgng_run-2_bold_calc_despike.nii.gz is 36.026867 degrees from plumb.
201112-22:17:04,222 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_slice_timing_correction_0.slice_timing".
201112-22:17:04,224 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique".
201112-22:17:04,278 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift.nii.gz
201112-22:17:04,522 nipype.interface INFO:
stderr 2020-11-12T22:17:04.522695:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:17:04,523 nipype.interface INFO:
stderr 2020-11-12T22:17:04.523013:++ Authored by: RW Cox
201112-22:17:04,534 nipype.interface INFO:
stderr 2020-11-12T22:17:04.534214:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift.nii.gz
201112-22:17:04,535 nipype.interface INFO:
stderr 2020-11-12T22:17:04.535313: + deoblique
201112-22:17:04,535 nipype.interface INFO:
stderr 2020-11-12T22:17:04.535605: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-22:17:06,673 nipype.interface INFO:
stderr 2020-11-12T22:17:06.673126:++ 3drefit processed 1 datasets
201112-22:17:06,839 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:17:06,840 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient".
201112-22:17:06,847 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift.nii.gz
201112-22:17:09,625 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:17:09,626 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI".
201112-22:17:09,632 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz
201112-22:17:09,878 nipype.interface INFO:
stderr 2020-11-12T22:17:09.878912:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:17:09,879 nipype.interface INFO:
stderr 2020-11-12T22:17:09.879206:++ Authored by: KR Hammett & RW Cox
201112-22:17:10,482 nipype.interface INFO:
stderr 2020-11-12T22:17:10.482126:++ Output dataset ./sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-22:17:10,629 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:17:10,631 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref".
201112-22:17:10,638 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz
201112-22:17:10,888 nipype.interface INFO:
stderr 2020-11-12T22:17:10.887996:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:17:10,889 nipype.interface INFO:
stderr 2020-11-12T22:17:10.888977:++ Authored by: RW Cox
201112-22:17:10,900 nipype.interface INFO:
stderr 2020-11-12T22:17:10.900209:++ Coarse del was 10, replaced with 3
201112-22:18:57,461 nipype.interface INFO:
stderr 2020-11-12T22:18:57.461095:++ Max displacement in automask = 3.07 (mm) at sub-brick 5
201112-22:18:57,461 nipype.interface INFO:
stderr 2020-11-12T22:18:57.461914:++ Max delta displ in automask = 1.24 (mm) at sub-brick 17
201112-22:19:02,175 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:19:02,176 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion".
201112-22:19:02,183 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-22:19:02,434 nipype.interface INFO:
stderr 2020-11-12T22:19:02.434653:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:19:02,434 nipype.interface INFO:
stderr 2020-11-12T22:19:02.434966:++ Authored by: KR Hammett & RW Cox
201112-22:19:03,228 nipype.interface INFO:
stderr 2020-11-12T22:19:03.228601:++ Output dataset ./sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-22:19:03,377 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:19:03,379 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt".
201112-22:19:03,386 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:19:24,552 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:19:24,562 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_motion_correct".
201112-22:19:24,571 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:19:24,797 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_correct".
201112-22:19:24,799 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull".
201112-22:19:24,807 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-22:19:25,59 nipype.interface INFO:
stderr 2020-11-12T22:19:25.059256:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:19:25,59 nipype.interface INFO:
stderr 2020-11-12T22:19:25.059815:++ Authored by: KR Hammett & RW Cox
201112-22:19:25,694 nipype.interface INFO:
stderr 2020-11-12T22:19:25.694265:++ Output dataset ./sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-22:19:25,845 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:19:25,846 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass".
201112-22:19:25,851 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:19:27,659 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:19:27,661 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate".
201112-22:19:27,667 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:19:28,328 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:19:28,329 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask".
201112-22:19:28,335 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:19:28,742 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:19:28,743 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize".
201112-22:19:28,749 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:19:28,998 nipype.interface INFO:
stderr 2020-11-12T22:19:28.998762:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:20:43,24 nipype.interface INFO:
stderr 2020-11-12T22:20:43.024498: + Pre-processing: IAV..UW[s5114]Im
201112-22:20:43,39 nipype.interface INFO:
stderr 2020-11-12T22:20:43.039915:++ Output dataset ./uni.nii.gz
201112-22:20:43,40 nipype.interface INFO:
stderr 2020-11-12T22:20:43.040134:++ ===== Elapsed = 74.0 sec
201112-22:20:43,210 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:20:43,211 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass".
201112-22:20:43,217 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:20:43,469 nipype.interface INFO:
stderr 2020-11-12T22:20:43.468984:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:20:43,469 nipype.interface INFO:
stderr 2020-11-12T22:20:43.469618:++ Authored by: Emperor Zhark
201112-22:20:43,472 nipype.interface INFO:
stderr 2020-11-12T22:20:43.472449:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:20:43,478 nipype.interface INFO:
stderr 2020-11-12T22:20:43.478460:++ Forming automask
201112-22:20:43,480 nipype.interface INFO:
stderr 2020-11-12T22:20:43.480047: + Fixed clip level = 445.328918
201112-22:20:43,483 nipype.interface INFO:
stderr 2020-11-12T22:20:43.483580: + Used gradual clip level = 371.590118 .. 498.152679
201112-22:20:43,483 nipype.interface INFO:
stderr 2020-11-12T22:20:43.483789: + Number voxels above clip level = 29713
201112-22:20:43,483 nipype.interface INFO:
stderr 2020-11-12T22:20:43.483947: + Clustering voxels ...
201112-22:20:43,485 nipype.interface INFO:
stderr 2020-11-12T22:20:43.485048: + Largest cluster has 29708 voxels
201112-22:20:43,486 nipype.interface INFO:
stderr 2020-11-12T22:20:43.486411: + Clustering voxels ...
201112-22:20:43,487 nipype.interface INFO:
stderr 2020-11-12T22:20:43.487523: + Largest cluster has 29306 voxels
201112-22:20:43,490 nipype.interface INFO:
stderr 2020-11-12T22:20:43.490913: + Filled 863 voxels in small holes; now have 30169 voxels
201112-22:20:43,494 nipype.interface INFO:
stderr 2020-11-12T22:20:43.494141: + Filled 3 voxels in large holes; now have 30172 voxels
201112-22:20:43,495 nipype.interface INFO:
stderr 2020-11-12T22:20:43.495392: + Clustering voxels ...
201112-22:20:43,496 nipype.interface INFO:
stderr 2020-11-12T22:20:43.496478: + Largest cluster has 30170 voxels
201112-22:20:43,496 nipype.interface INFO:
stderr 2020-11-12T22:20:43.496708: + Clustering non-brain voxels ...
201112-22:20:43,496 nipype.interface INFO:
stderr 2020-11-12T22:20:43.496853: + Clustering voxels ...
201112-22:20:43,499 nipype.interface INFO:
stderr 2020-11-12T22:20:43.499682: + Largest cluster has 109044 voxels
201112-22:20:43,500 nipype.interface INFO:
stderr 2020-11-12T22:20:43.500013: + Mask now has 30220 voxels
201112-22:20:43,500 nipype.interface INFO:
stderr 2020-11-12T22:20:43.500166:++ Dilating automask
201112-22:20:43,507 nipype.interface INFO:
stderr 2020-11-12T22:20:43.507087: + Clustering voxels ...
201112-22:20:43,509 nipype.interface INFO:
stderr 2020-11-12T22:20:43.509471: + Largest cluster has 102889 voxels
201112-22:20:43,509 nipype.interface INFO:
stderr 2020-11-12T22:20:43.509805:++ 36375 voxels in the mask [out of 139264: 26.12%]
201112-22:20:43,509 nipype.interface INFO:
stderr 2020-11-12T22:20:43.509976:++ first 10 x-planes are zero [from R]
201112-22:20:43,510 nipype.interface INFO:
stderr 2020-11-12T22:20:43.510134:++ last 8 x-planes are zero [from L]
201112-22:20:43,510 nipype.interface INFO:
stderr 2020-11-12T22:20:43.510276:++ first 4 y-planes are zero [from P]
201112-22:20:43,510 nipype.interface INFO:
stderr 2020-11-12T22:20:43.510436:++ last 8 y-planes are zero [from A]
201112-22:20:43,510 nipype.interface INFO:
stderr 2020-11-12T22:20:43.510585:++ first 0 z-planes are zero [from I]
201112-22:20:43,510 nipype.interface INFO:
stderr 2020-11-12T22:20:43.510720:++ last 1 z-planes are zero [from S]
201112-22:20:43,514 nipype.interface INFO:
stderr 2020-11-12T22:20:43.514297:++ Output dataset ./uni_mask.nii.gz
201112-22:20:43,514 nipype.interface INFO:
stderr 2020-11-12T22:20:43.514476:++ applying mask to original data
201112-22:20:43,515 nipype.interface INFO:
stderr 2020-11-12T22:20:43.515133:++ Writing masked data
201112-22:20:43,529 nipype.interface INFO:
stderr 2020-11-12T22:20:43.529121:++ Output dataset ./uni_masked.nii.gz
201112-22:20:43,529 nipype.interface INFO:
stderr 2020-11-12T22:20:43.529369:++ CPU time = 0.000000 sec
201112-22:20:43,672 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:20:43,673 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks".
201112-22:20:43,680 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:20:44,72 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:20:44,74 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-22:20:44,78 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-22:20:44,307 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-22:20:44,309 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-22:20:44,315 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:20:44,568 nipype.interface INFO:
stderr 2020-11-12T22:20:44.568079:++ no -frac option: defaulting to -union
201112-22:20:44,568 nipype.interface INFO:
stderr 2020-11-12T22:20:44.568596:++ processing 1 input dataset(s), NN=2...
201112-22:20:44,568 nipype.interface INFO:
stderr 2020-11-12T22:20:44.568874:++ padding all datasets by 0 (for dilations)
201112-22:20:44,576 nipype.interface INFO:
stderr 2020-11-12T22:20:44.576927:++ frac 0 over 1 volumes gives min count 0
201112-22:20:44,577 nipype.interface INFO:
stderr 2020-11-12T22:20:44.577765:++ voxel limits: 0 clipped, 36319 survived, 102945 were zero
201112-22:20:44,577 nipype.interface INFO:
stderr 2020-11-12T22:20:44.577970:++ writing result sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-22:20:44,582 nipype.interface INFO:
stderr 2020-11-12T22:20:44.582505:++ Output dataset ./sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-22:20:44,732 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-22:20:44,734 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_functional_brain_mask".
201112-22:20:44,742 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:20:44,970 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask".
201112-22:20:44,971 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/functional_brain_mask_derivative_0".
201112-22:20:44,975 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-22:20:45,189 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-22:20:45,193 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:20:45,661 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201112-22:20:45,676 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.functional_brain_mask_derivative_0".
201112-22:20:45,678 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain".
201112-22:20:45,685 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:20:45,928 nipype.interface INFO:
stderr 2020-11-12T22:20:45.928828:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:20:45,929 nipype.interface INFO:
stderr 2020-11-12T22:20:45.929146:++ Authored by: A cast of thousands
201112-22:20:49,22 nipype.interface INFO:
stderr 2020-11-12T22:20:49.022377:++ Output dataset ./sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:20:49,194 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:20:49,195 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize".
201112-22:20:49,200 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-22:20:51,439 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:20:51,441 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-22:20:51,447 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:20:52,324 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_mean".
201112-22:20:52,325 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-22:20:52,330 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:20:52,570 nipype.interface INFO:
stderr 2020-11-12T22:20:52.569954:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:20:52,570 nipype.interface INFO:
stderr 2020-11-12T22:20:52.570245:++ Authored by: KR Hammett & RW Cox
201112-22:20:53,139 nipype.interface INFO:
stderr 2020-11-12T22:20:53.139243:++ Output dataset ./sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:20:53,298 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.functional_mean".
201112-22:20:53,300 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-2/std_dev".
201112-22:20:53,307 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-2/std_dev/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:20:53,550 nipype.interface INFO:
stderr 2020-11-12T22:20:53.550112:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:20:53,550 nipype.interface INFO:
stderr 2020-11-12T22:20:53.550601:++ Authored by: KR Hammett & RW Cox
201112-22:20:54,67 nipype.interface INFO:
stderr 2020-11-12T22:20:54.067738:++ Output dataset ./sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:20:54,218 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev".
201112-22:20:54,220 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_functional_preprocessed".
201112-22:20:54,227 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:20:54,457 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed".
201112-22:20:54,459 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize".
201112-22:20:54,464 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:20:55,492 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:20:55,493 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_functional_preprocessed_mask".
201112-22:20:55,500 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:20:55,733 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed_mask".
201112-22:20:55,735 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean".
201112-22:20:55,741 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:20:56,0 nipype.interface INFO:
stderr 2020-11-12T22:20:56.000032:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:20:56,0 nipype.interface INFO:
stderr 2020-11-12T22:20:56.000499:++ Authored by: KR Hammett & RW Cox
201112-22:20:56,553 nipype.interface INFO:
stderr 2020-11-12T22:20:56.552975:++ Output dataset ./sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-22:20:56,729 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:20:56,731 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_mean_functional".
201112-22:20:56,738 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:20:56,967 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional".
201112-22:20:56,969 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/norm_motion_params".
201112-22:20:56,975 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:20:57,209 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:20:57,211 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_slice_time_corrected".
201112-22:20:57,218 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:20:57,449 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_slice_time_corrected".
201112-22:20:57,451 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_raw_functional".
201112-22:20:57,458 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:20:57,804 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_raw_functional".
201112-22:20:57,805 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_tgng_run-2/check_func_scan".
201112-22:20:57,838 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:20:58,72 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.check_func_scan".
201112-22:20:58,82 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_tgng_run-1/select_scan_params".
201112-22:20:58,110 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:20:58,347 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.select_scan_params".
201112-22:20:58,358 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_tgng_run-1/s3_scan_params".
201112-22:20:58,365 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:20:58,599 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.s3_scan_params".
201112-22:20:58,602 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.scan_params_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/scan_params_0".
201112-22:20:58,611 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:20:58,840 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.scan_params_0".
201112-22:20:58,842 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_tgng_run-1/selectrest".
201112-22:20:58,874 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:20:59,106 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.selectrest".
201112-22:20:59,117 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_tgng_run-1/check_for_s3".
201112-22:20:59,121 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:20:59,470 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.check_for_s3".
201112-22:20:59,471 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-128_ses-1/edit_func_0/_scan_tgng_run-1/func_get_idx".
201112-22:20:59,478 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:20:59,711 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.edit_func_0.func_get_idx".
201112-22:20:59,712 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-128_ses-1/edit_func_0/_scan_tgng_run-1/func_drop_trs".
201112-22:20:59,718 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-128/ses-1/func/sub-128_ses-1_task-tgng_run-1_bold.nii.gz[0..129] -expr "a" -prefix sub-128_ses-1_task-tgng_run-1_bold_calc.nii.gz
201112-22:20:59,963 nipype.interface INFO:
stderr 2020-11-12T22:20:59.963748:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:20:59,964 nipype.interface INFO:
stderr 2020-11-12T22:20:59.964103:++ Authored by: A cast of thousands
201112-22:21:05,643 nipype.interface INFO:
stderr 2020-11-12T22:21:05.643452:++ Output dataset ./sub-128_ses-1_task-tgng_run-1_bold_calc.nii.gz
201112-22:21:05,818 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.edit_func_0.func_drop_trs".
201112-22:21:05,820 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique".
201112-22:21:05,866 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-128_ses-1_task-tgng_run-1_bold_calc.nii.gz
201112-22:21:06,112 nipype.interface INFO:
stderr 2020-11-12T22:21:06.112281:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:21:06,112 nipype.interface INFO:
stderr 2020-11-12T22:21:06.112610:++ Authored by: RW Cox
201112-22:21:06,121 nipype.interface INFO:
stderr 2020-11-12T22:21:06.121789:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-128_ses-1_task-tgng_run-1_bold_calc.nii.gz
201112-22:21:06,122 nipype.interface INFO:
stderr 2020-11-12T22:21:06.122703: + deoblique
201112-22:21:06,123 nipype.interface INFO:
stderr 2020-11-12T22:21:06.122985: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-128_ses-1_task-tgng_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-128_ses-1_task-tgng_run-1_bold_calc.nii.gz in NIFTI storage)
201112-22:21:09,917 nipype.interface INFO:
stderr 2020-11-12T22:21:09.917277:++ 3drefit processed 1 datasets
201112-22:21:10,91 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:21:10,92 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient".
201112-22:21:10,99 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-1_task-tgng_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-128_ses-1_task-tgng_run-1_bold_calc.nii.gz
201112-22:21:14,516 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:21:14,518 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI".
201112-22:21:14,523 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-128_ses-1_task-tgng_run-1_bold_calc_resample.nii.gz
201112-22:21:14,768 nipype.interface INFO:
stderr 2020-11-12T22:21:14.768216:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:21:14,768 nipype.interface INFO:
stderr 2020-11-12T22:21:14.768734:++ Authored by: KR Hammett & RW Cox
201112-22:21:15,231 nipype.interface INFO:
stderr 2020-11-12T22:21:15.231840:++ Output dataset ./sub-128_ses-1_task-tgng_run-1_bold_calc_resample_tstat.nii.gz
201112-22:21:15,379 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:21:15,381 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref".
201112-22:21:15,387 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-1_task-tgng_run-1_bold_calc_resample.1D -1Dmatrix_save sub-128_ses-1_task-tgng_run-1_bold_calc_resample.aff12.1D -prefix sub-128_ses-1_task-tgng_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-128_ses-1_task-tgng_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-1_task-tgng_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref/sub-128_ses-1_task-tgng_run-1_bold_calc_resample.nii.gz
201112-22:21:15,630 nipype.interface INFO:
stderr 2020-11-12T22:21:15.630557:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:21:15,630 nipype.interface INFO:
stderr 2020-11-12T22:21:15.630859:++ Authored by: RW Cox
201112-22:21:15,641 nipype.interface INFO:
stderr 2020-11-12T22:21:15.641700:++ Coarse del was 10, replaced with 3
201112-22:23:02,57 nipype.interface INFO:
stderr 2020-11-12T22:23:02.056919:++ Max displacement in automask = 1.56 (mm) at sub-brick 114
201112-22:23:02,57 nipype.interface INFO:
stderr 2020-11-12T22:23:02.057684:++ Max delta displ in automask = 1.44 (mm) at sub-brick 114
201112-22:23:06,798 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:23:06,800 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion".
201112-22:23:06,806 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-128_ses-1_task-tgng_run-1_bold_calc_resample_volreg.nii.gz
201112-22:23:07,58 nipype.interface INFO:
stderr 2020-11-12T22:23:07.058751:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:23:07,59 nipype.interface INFO:
stderr 2020-11-12T22:23:07.059049:++ Authored by: KR Hammett & RW Cox
201112-22:23:08,756 nipype.interface INFO:
stderr 2020-11-12T22:23:08.756344:++ Output dataset ./sub-128_ses-1_task-tgng_run-1_bold_calc_resample_volreg_tstat.nii.gz
201112-22:23:08,926 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:23:08,927 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt".
201112-22:23:08,935 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-128_ses-1_task-tgng_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-128_ses-1_task-tgng_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:23:32,398 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:23:32,405 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calculate_FDJ".
201112-22:23:32,410 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:23:32,637 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:23:32,639 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_frame_wise_displacement_jenkinson".
201112-22:23:32,645 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:23:32,876 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_jenkinson".
201112-22:23:32,878 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_max_displacement".
201112-22:23:32,886 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:23:33,117 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_max_displacement".
201112-22:23:33,119 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_coordinate_transformation".
201112-22:23:33,138 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:23:33,416 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_coordinate_transformation".
201112-22:23:33,428 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull".
201112-22:23:33,435 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf.nii.gz
201112-22:23:33,691 nipype.interface INFO:
stderr 2020-11-12T22:23:33.691324:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:23:33,692 nipype.interface INFO:
stderr 2020-11-12T22:23:33.692129:++ Authored by: KR Hammett & RW Cox
201112-22:23:34,197 nipype.interface INFO:
stderr 2020-11-12T22:23:34.197688:++ Output dataset ./sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat.nii.gz
201112-22:23:34,347 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:23:34,348 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass".
201112-22:23:34,354 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:23:36,165 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:23:36,166 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate".
201112-22:23:36,171 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:23:36,827 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:23:36,829 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask".
201112-22:23:36,835 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask/sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:23:37,242 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:23:37,243 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize".
201112-22:23:37,249 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize/sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:23:37,495 nipype.interface INFO:
stderr 2020-11-12T22:23:37.495893:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:24:51,227 nipype.interface INFO:
stderr 2020-11-12T22:24:51.227263: + Pre-processing: IAV..UW[s4948]Im
201112-22:24:51,240 nipype.interface INFO:
stderr 2020-11-12T22:24:51.240744:++ Output dataset ./uni.nii.gz
201112-22:24:51,241 nipype.interface INFO:
stderr 2020-11-12T22:24:51.241022:++ ===== Elapsed = 73.7 sec
201112-22:24:51,408 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:24:51,409 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass".
201112-22:24:51,415 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:24:51,660 nipype.interface INFO:
stderr 2020-11-12T22:24:51.660268:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:24:51,660 nipype.interface INFO:
stderr 2020-11-12T22:24:51.660894:++ Authored by: Emperor Zhark
201112-22:24:51,663 nipype.interface INFO:
stderr 2020-11-12T22:24:51.663469:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:24:51,669 nipype.interface INFO:
stderr 2020-11-12T22:24:51.669037:++ Forming automask
201112-22:24:51,671 nipype.interface INFO:
stderr 2020-11-12T22:24:51.671003: + Fixed clip level = 441.282867
201112-22:24:51,675 nipype.interface INFO:
stderr 2020-11-12T22:24:51.675211: + Used gradual clip level = 371.347137 .. 490.169739
201112-22:24:51,675 nipype.interface INFO:
stderr 2020-11-12T22:24:51.675464: + Number voxels above clip level = 29638
201112-22:24:51,675 nipype.interface INFO:
stderr 2020-11-12T22:24:51.675650: + Clustering voxels ...
201112-22:24:51,677 nipype.interface INFO:
stderr 2020-11-12T22:24:51.677077: + Largest cluster has 29635 voxels
201112-22:24:51,678 nipype.interface INFO:
stderr 2020-11-12T22:24:51.678760: + Clustering voxels ...
201112-22:24:51,679 nipype.interface INFO:
stderr 2020-11-12T22:24:51.679857: + Largest cluster has 29179 voxels
201112-22:24:51,683 nipype.interface INFO:
stderr 2020-11-12T22:24:51.683225: + Filled 885 voxels in small holes; now have 30064 voxels
201112-22:24:51,685 nipype.interface INFO:
stderr 2020-11-12T22:24:51.685445: + Filled 1 voxels in large holes; now have 30065 voxels
201112-22:24:51,686 nipype.interface INFO:
stderr 2020-11-12T22:24:51.686692: + Clustering voxels ...
201112-22:24:51,687 nipype.interface INFO:
stderr 2020-11-12T22:24:51.687776: + Largest cluster has 30063 voxels
201112-22:24:51,688 nipype.interface INFO:
stderr 2020-11-12T22:24:51.688002: + Clustering non-brain voxels ...
201112-22:24:51,688 nipype.interface INFO:
stderr 2020-11-12T22:24:51.688142: + Clustering voxels ...
201112-22:24:51,690 nipype.interface INFO:
stderr 2020-11-12T22:24:51.690959: + Largest cluster has 109136 voxels
201112-22:24:51,691 nipype.interface INFO:
stderr 2020-11-12T22:24:51.691284: + Mask now has 30128 voxels
201112-22:24:51,691 nipype.interface INFO:
stderr 2020-11-12T22:24:51.691441:++ Dilating automask
201112-22:24:51,698 nipype.interface INFO:
stderr 2020-11-12T22:24:51.698917: + Clustering voxels ...
201112-22:24:51,701 nipype.interface INFO:
stderr 2020-11-12T22:24:51.701304: + Largest cluster has 103007 voxels
201112-22:24:51,701 nipype.interface INFO:
stderr 2020-11-12T22:24:51.701643:++ 36257 voxels in the mask [out of 139264: 26.03%]
201112-22:24:51,701 nipype.interface INFO:
stderr 2020-11-12T22:24:51.701812:++ first 10 x-planes are zero [from R]
201112-22:24:51,701 nipype.interface INFO:
stderr 2020-11-12T22:24:51.701970:++ last 8 x-planes are zero [from L]
201112-22:24:51,702 nipype.interface INFO:
stderr 2020-11-12T22:24:51.702112:++ first 4 y-planes are zero [from P]
201112-22:24:51,702 nipype.interface INFO:
stderr 2020-11-12T22:24:51.702258:++ last 8 y-planes are zero [from A]
201112-22:24:51,702 nipype.interface INFO:
stderr 2020-11-12T22:24:51.702397:++ first 0 z-planes are zero [from I]
201112-22:24:51,702 nipype.interface INFO:
stderr 2020-11-12T22:24:51.702534:++ last 1 z-planes are zero [from S]
201112-22:24:51,706 nipype.interface INFO:
stderr 2020-11-12T22:24:51.706227:++ Output dataset ./uni_mask.nii.gz
201112-22:24:51,706 nipype.interface INFO:
stderr 2020-11-12T22:24:51.706405:++ applying mask to original data
201112-22:24:51,707 nipype.interface INFO:
stderr 2020-11-12T22:24:51.707066:++ Writing masked data
201112-22:24:51,721 nipype.interface INFO:
stderr 2020-11-12T22:24:51.720974:++ Output dataset ./uni_masked.nii.gz
201112-22:24:51,721 nipype.interface INFO:
stderr 2020-11-12T22:24:51.721281:++ CPU time = 0.000000 sec
201112-22:24:51,866 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:24:51,868 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks".
201112-22:24:51,874 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:24:52,272 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:24:52,274 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/cal_DVARS".
201112-22:24:52,281 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-22:24:52,968 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-22:24:52,970 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain".
201112-22:24:52,977 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:24:53,219 nipype.interface INFO:
stderr 2020-11-12T22:24:53.219260:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:24:53,219 nipype.interface INFO:
stderr 2020-11-12T22:24:53.219569:++ Authored by: A cast of thousands
201112-22:24:55,962 nipype.interface INFO:
stderr 2020-11-12T22:24:55.961967:++ Output dataset ./sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:24:56,134 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:24:56,135 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize".
201112-22:24:56,141 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain/sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-22:24:58,306 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:24:58,307 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize".
201112-22:24:58,313 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize/sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:24:59,328 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:24:59,329 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean".
201112-22:24:59,334 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:24:59,650 nipype.interface INFO:
stderr 2020-11-12T22:24:59.650156:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:24:59,650 nipype.interface INFO:
stderr 2020-11-12T22:24:59.650930:++ Authored by: KR Hammett & RW Cox
201112-22:24:59,953 nipype.interface INFO:
stderr 2020-11-12T22:24:59.953831:++ Output dataset ./sub-128_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-22:25:00,126 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:25:00,127 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/norm_motion_params".
201112-22:25:00,133 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:25:00,363 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:25:00,364 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_motion_0/_scan_tgng_run-1/motion_plot".
201112-22:25:00,368 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-22:25:00,806 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_motion_0.motion_plot".
201112-22:25:00,808 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_qc___movement_trans_plot".
201112-22:25:00,815 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:25:01,29 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___movement_trans_plot/_scan_tgng_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/movement_trans_plot/_scan_tgng_run-1/motion_trans_plot.png
201112-22:25:01,47 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_trans_plot".
201112-22:25:01,49 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_qc___movement_rot_plot".
201112-22:25:01,57 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:25:01,269 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___movement_rot_plot/_scan_tgng_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/movement_rot_plot/_scan_tgng_run-1/motion_rot_plot.png
201112-22:25:01,289 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_rot_plot".
201112-22:25:01,291 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calc_motion_parameters".
201112-22:25:01,298 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:25:01,536 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-22:25:01,537 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_motion_params".
201112-22:25:01,545 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:25:01,779 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_params".
201112-22:25:01,781 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calculate_FD".
201112-22:25:01,785 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-22:25:02,21 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-22:25:02,22 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_frame_wise_displacement_power".
201112-22:25:02,30 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:25:02,261 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_power".
201112-22:25:02,263 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calc_power_parameters".
201112-22:25:02,269 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:25:02,501 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-22:25:02,503 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_power_params".
201112-22:25:02,510 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:25:02,741 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_power_params".
201112-22:25:02,743 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_movement_parameters".
201112-22:25:02,750 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:25:02,980 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_movement_parameters".
201112-22:25:02,982 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/func_despiked_0".
201112-22:25:02,987 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-128_ses-1_task-tgng_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/func_despiked_0/sub-128_ses-1_task-tgng_run-1_bold_calc.nii.gz
201112-22:25:03,245 nipype.interface INFO:
stderr 2020-11-12T22:25:03.245018:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:25:03,245 nipype.interface INFO:
stderr 2020-11-12T22:25:03.245367:++ Authored by: RW Cox
201112-22:25:03,248 nipype.interface INFO:
stderr 2020-11-12T22:25:03.248590:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:25:03,248 nipype.interface INFO:
stderr 2020-11-12T22:25:03.248590: such as /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/func_despiked_0/sub-128_ses-1_task-tgng_run-1_bold_calc.nii.gz,
201112-22:25:03,248 nipype.interface INFO:
stderr 2020-11-12T22:25:03.248590: or viewing/combining it with volumes of differing obliquity,
201112-22:25:03,248 nipype.interface INFO:
stderr 2020-11-12T22:25:03.248590: you should consider running:
201112-22:25:03,249 nipype.interface INFO:
stderr 2020-11-12T22:25:03.248590: 3dWarp -deoblique
201112-22:25:03,249 nipype.interface INFO:
stderr 2020-11-12T22:25:03.248590: on this and other oblique datasets in the same session.
201112-22:25:03,249 nipype.interface INFO:
stderr 2020-11-12T22:25:03.248590: See 3dWarp -help for details.
201112-22:25:03,249 nipype.interface INFO:
stderr 2020-11-12T22:25:03.249435:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/func_despiked_0/sub-128_ses-1_task-tgng_run-1_bold_calc.nii.gz is 36.026867 degrees from plumb.
201112-22:25:03,249 nipype.interface INFO:
stderr 2020-11-12T22:25:03.249626:++ Input dataset is in short format, but output will be in float format
201112-22:25:03,249 nipype.interface INFO:
stderr 2020-11-12T22:25:03.249797:++ ignoring first 0 time points, using last 130
201112-22:25:03,249 nipype.interface INFO:
stderr 2020-11-12T22:25:03.249968:++ using 130 time points => -corder 4
201112-22:25:03,250 nipype.interface INFO:
stderr 2020-11-12T22:25:03.250133:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/func_despiked_0/sub-128_ses-1_task-tgng_run-1_bold_calc.nii.gz
201112-22:25:03,712 nipype.interface INFO:
stderr 2020-11-12T22:25:03.712474:++ 34278 voxels in the automask [out of 139264 in dataset]
201112-22:25:03,718 nipype.interface INFO:
stderr 2020-11-12T22:25:03.718045:++ 58816 voxels in the dilated automask [out of 139264 in dataset]
201112-22:25:03,728 nipype.interface INFO:
stderr 2020-11-12T22:25:03.728828:++ Procesing time series with OLD model fit algorithm
201112-22:25:03,729 nipype.interface INFO:
stderr 2020-11-12T22:25:03.729010:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-22:25:03,729 nipype.interface INFO:
stderr 2020-11-12T22:25:03.729172: + [ 3.457% .. 0.072% of normal distribution]
201112-22:25:03,729 nipype.interface INFO:
stderr 2020-11-12T22:25:03.729323: + [ 8.839% .. 3.125% of Laplace distribution]
201112-22:25:03,729 nipype.interface INFO:
stderr 2020-11-12T22:25:03.729487:++ start OpenMP thread #0
201112-22:25:09,716 nipype.interface INFO:
stderr 2020-11-12T22:25:09.716728:.........................
201112-22:25:09,717 nipype.interface INFO:
stderr 2020-11-12T22:25:09.717204:++ Elapsed despike time = 5s 988ms
201112-22:25:09,717 nipype.interface INFO:
stderr 2020-11-12T22:25:09.717355:
201112-22:25:09,718 nipype.interface INFO:
stderr 2020-11-12T22:25:09.718195:++ FINAL: 7646080 data points, 607107 edits [7.940%], 149083 big edits [1.950%]
201112-22:25:13,697 nipype.interface INFO:
stderr 2020-11-12T22:25:13.697274:++ Output dataset ./sub-128_ses-1_task-tgng_run-1_bold_calc_despike.nii.gz
201112-22:25:13,884 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_despiked_0".
201112-22:25:13,885 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing".
201112-22:25:13,893 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:25:13,894 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing/sub-128_ses-1_task-tgng_run-1_bold_calc_despike.nii.gz
201112-22:25:14,108 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:25:14,147 nipype.interface INFO:
stderr 2020-11-12T22:25:14.147607:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:25:14,151 nipype.interface INFO:
stderr 2020-11-12T22:25:14.151874:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:25:14,152 nipype.interface INFO:
stderr 2020-11-12T22:25:14.151874: such as /outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing/sub-128_ses-1_task-tgng_run-1_bold_calc_despike.nii.gz,
201112-22:25:14,152 nipype.interface INFO:
stderr 2020-11-12T22:25:14.151874: or viewing/combining it with volumes of differing obliquity,
201112-22:25:14,152 nipype.interface INFO:
stderr 2020-11-12T22:25:14.151874: you should consider running:
201112-22:25:14,152 nipype.interface INFO:
stderr 2020-11-12T22:25:14.151874: 3dWarp -deoblique
201112-22:25:14,152 nipype.interface INFO:
stderr 2020-11-12T22:25:14.151874: on this and other oblique datasets in the same session.
201112-22:25:14,152 nipype.interface INFO:
stderr 2020-11-12T22:25:14.151874: See 3dWarp -help for details.
201112-22:25:14,153 nipype.interface INFO:
stderr 2020-11-12T22:25:14.153132:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing/sub-128_ses-1_task-tgng_run-1_bold_calc_despike.nii.gz is 36.026867 degrees from plumb.
201112-22:25:18,472 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_slice_timing_correction_0.slice_timing".
201112-22:25:18,474 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique".
201112-22:25:18,529 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift.nii.gz
201112-22:25:18,772 nipype.interface INFO:
stderr 2020-11-12T22:25:18.772628:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:25:18,772 nipype.interface INFO:
stderr 2020-11-12T22:25:18.772943:++ Authored by: RW Cox
201112-22:25:18,783 nipype.interface INFO:
stderr 2020-11-12T22:25:18.783246:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift.nii.gz
201112-22:25:18,784 nipype.interface INFO:
stderr 2020-11-12T22:25:18.784131: + deoblique
201112-22:25:18,784 nipype.interface INFO:
stderr 2020-11-12T22:25:18.784417: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-22:25:20,934 nipype.interface INFO:
stderr 2020-11-12T22:25:20.934798:++ 3drefit processed 1 datasets
201112-22:25:21,107 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:25:21,108 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient".
201112-22:25:21,114 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift.nii.gz
201112-22:25:23,873 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:25:23,874 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI".
201112-22:25:23,881 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-22:25:24,141 nipype.interface INFO:
stderr 2020-11-12T22:25:24.141205:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:25:24,141 nipype.interface INFO:
stderr 2020-11-12T22:25:24.141642:++ Authored by: KR Hammett & RW Cox
201112-22:25:24,745 nipype.interface INFO:
stderr 2020-11-12T22:25:24.745831:++ Output dataset ./sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-22:25:24,898 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:25:24,900 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref".
201112-22:25:24,906 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-22:25:25,150 nipype.interface INFO:
stderr 2020-11-12T22:25:25.150033:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:25:25,150 nipype.interface INFO:
stderr 2020-11-12T22:25:25.150641:++ Authored by: RW Cox
201112-22:25:25,157 nipype.interface INFO:
stderr 2020-11-12T22:25:25.157969:++ Coarse del was 10, replaced with 3
201112-22:27:11,729 nipype.interface INFO:
stderr 2020-11-12T22:27:11.729036:++ Max displacement in automask = 1.07 (mm) at sub-brick 125
201112-22:27:11,729 nipype.interface INFO:
stderr 2020-11-12T22:27:11.729509:++ Max delta displ in automask = 0.75 (mm) at sub-brick 36
201112-22:27:16,369 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:27:16,371 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion".
201112-22:27:16,378 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-22:27:16,625 nipype.interface INFO:
stderr 2020-11-12T22:27:16.625869:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:27:16,626 nipype.interface INFO:
stderr 2020-11-12T22:27:16.626172:++ Authored by: KR Hammett & RW Cox
201112-22:27:17,417 nipype.interface INFO:
stderr 2020-11-12T22:27:17.417784:++ Output dataset ./sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-22:27:17,569 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:27:17,571 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt".
201112-22:27:17,578 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:27:39,159 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:27:39,167 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_motion_correct".
201112-22:27:39,175 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:27:39,404 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_correct".
201112-22:27:39,405 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull".
201112-22:27:39,413 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-22:27:39,670 nipype.interface INFO:
stderr 2020-11-12T22:27:39.669958:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:27:39,670 nipype.interface INFO:
stderr 2020-11-12T22:27:39.670309:++ Authored by: KR Hammett & RW Cox
201112-22:27:40,307 nipype.interface INFO:
stderr 2020-11-12T22:27:40.307305:++ Output dataset ./sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-22:27:40,459 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:27:40,460 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass".
201112-22:27:40,466 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:27:42,275 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:27:42,276 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate".
201112-22:27:42,282 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:27:42,934 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:27:42,936 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask".
201112-22:27:42,941 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:27:43,344 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:27:43,345 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize".
201112-22:27:43,351 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:27:43,599 nipype.interface INFO:
stderr 2020-11-12T22:27:43.599163:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:28:57,219 nipype.interface INFO:
stderr 2020-11-12T22:28:57.219506: + Pre-processing: IAV..UW[s4937]Im
201112-22:28:57,233 nipype.interface INFO:
stderr 2020-11-12T22:28:57.233811:++ Output dataset ./uni.nii.gz
201112-22:28:57,234 nipype.interface INFO:
stderr 2020-11-12T22:28:57.234089:++ ===== Elapsed = 73.6 sec
201112-22:28:57,405 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:28:57,406 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass".
201112-22:28:57,412 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:28:57,663 nipype.interface INFO:
stderr 2020-11-12T22:28:57.663729:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:28:57,664 nipype.interface INFO:
stderr 2020-11-12T22:28:57.664035:++ Authored by: Emperor Zhark
201112-22:28:57,666 nipype.interface INFO:
stderr 2020-11-12T22:28:57.666575:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:28:57,670 nipype.interface INFO:
stderr 2020-11-12T22:28:57.670503:++ Forming automask
201112-22:28:57,671 nipype.interface INFO:
stderr 2020-11-12T22:28:57.671880: + Fixed clip level = 440.529175
201112-22:28:57,675 nipype.interface INFO:
stderr 2020-11-12T22:28:57.675393: + Used gradual clip level = 371.051910 .. 489.876831
201112-22:28:57,675 nipype.interface INFO:
stderr 2020-11-12T22:28:57.675605: + Number voxels above clip level = 29645
201112-22:28:57,675 nipype.interface INFO:
stderr 2020-11-12T22:28:57.675763: + Clustering voxels ...
201112-22:28:57,676 nipype.interface INFO:
stderr 2020-11-12T22:28:57.676868: + Largest cluster has 29642 voxels
201112-22:28:57,678 nipype.interface INFO:
stderr 2020-11-12T22:28:57.678250: + Clustering voxels ...
201112-22:28:57,679 nipype.interface INFO:
stderr 2020-11-12T22:28:57.679348: + Largest cluster has 29185 voxels
201112-22:28:57,682 nipype.interface INFO:
stderr 2020-11-12T22:28:57.682962: + Filled 889 voxels in small holes; now have 30074 voxels
201112-22:28:57,685 nipype.interface INFO:
stderr 2020-11-12T22:28:57.685184: + Filled 1 voxels in large holes; now have 30075 voxels
201112-22:28:57,686 nipype.interface INFO:
stderr 2020-11-12T22:28:57.686438: + Clustering voxels ...
201112-22:28:57,687 nipype.interface INFO:
stderr 2020-11-12T22:28:57.687530: + Largest cluster has 30073 voxels
201112-22:28:57,687 nipype.interface INFO:
stderr 2020-11-12T22:28:57.687775: + Clustering non-brain voxels ...
201112-22:28:57,687 nipype.interface INFO:
stderr 2020-11-12T22:28:57.687918: + Clustering voxels ...
201112-22:28:57,690 nipype.interface INFO:
stderr 2020-11-12T22:28:57.690740: + Largest cluster has 109126 voxels
201112-22:28:57,691 nipype.interface INFO:
stderr 2020-11-12T22:28:57.691068: + Mask now has 30138 voxels
201112-22:28:57,691 nipype.interface INFO:
stderr 2020-11-12T22:28:57.691220:++ Dilating automask
201112-22:28:57,698 nipype.interface INFO:
stderr 2020-11-12T22:28:57.698145: + Clustering voxels ...
201112-22:28:57,700 nipype.interface INFO:
stderr 2020-11-12T22:28:57.700522: + Largest cluster has 103000 voxels
201112-22:28:57,700 nipype.interface INFO:
stderr 2020-11-12T22:28:57.700851:++ 36264 voxels in the mask [out of 139264: 26.04%]
201112-22:28:57,701 nipype.interface INFO:
stderr 2020-11-12T22:28:57.701018:++ first 10 x-planes are zero [from R]
201112-22:28:57,701 nipype.interface INFO:
stderr 2020-11-12T22:28:57.701175:++ last 8 x-planes are zero [from L]
201112-22:28:57,701 nipype.interface INFO:
stderr 2020-11-12T22:28:57.701316:++ first 4 y-planes are zero [from P]
201112-22:28:57,701 nipype.interface INFO:
stderr 2020-11-12T22:28:57.701475:++ last 8 y-planes are zero [from A]
201112-22:28:57,701 nipype.interface INFO:
stderr 2020-11-12T22:28:57.701607:++ first 0 z-planes are zero [from I]
201112-22:28:57,701 nipype.interface INFO:
stderr 2020-11-12T22:28:57.701742:++ last 1 z-planes are zero [from S]
201112-22:28:57,705 nipype.interface INFO:
stderr 2020-11-12T22:28:57.705462:++ Output dataset ./uni_mask.nii.gz
201112-22:28:57,705 nipype.interface INFO:
stderr 2020-11-12T22:28:57.705634:++ applying mask to original data
201112-22:28:57,706 nipype.interface INFO:
stderr 2020-11-12T22:28:57.706294:++ Writing masked data
201112-22:28:57,719 nipype.interface INFO:
stderr 2020-11-12T22:28:57.719940:++ Output dataset ./uni_masked.nii.gz
201112-22:28:57,720 nipype.interface INFO:
stderr 2020-11-12T22:28:57.720186:++ CPU time = 0.000000 sec
201112-22:28:57,867 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:28:57,868 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks".
201112-22:28:57,875 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:28:58,274 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:28:58,275 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-22:28:58,280 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-22:28:58,508 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-22:28:58,510 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-22:28:58,516 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:28:58,758 nipype.interface INFO:
stderr 2020-11-12T22:28:58.758117:++ no -frac option: defaulting to -union
201112-22:28:58,758 nipype.interface INFO:
stderr 2020-11-12T22:28:58.758432:++ processing 1 input dataset(s), NN=2...
201112-22:28:58,758 nipype.interface INFO:
stderr 2020-11-12T22:28:58.758594:++ padding all datasets by 0 (for dilations)
201112-22:28:58,762 nipype.interface INFO:
stderr 2020-11-12T22:28:58.762947:++ frac 0 over 1 volumes gives min count 0
201112-22:28:58,763 nipype.interface INFO:
stderr 2020-11-12T22:28:58.763346:++ voxel limits: 0 clipped, 36196 survived, 103068 were zero
201112-22:28:58,763 nipype.interface INFO:
stderr 2020-11-12T22:28:58.763528:++ writing result sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-22:28:58,767 nipype.interface INFO:
stderr 2020-11-12T22:28:58.767506:++ Output dataset ./sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-22:28:58,914 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-22:28:58,916 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_functional_brain_mask".
201112-22:28:58,923 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:28:59,147 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask".
201112-22:28:59,149 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/functional_brain_mask_derivative_0".
201112-22:28:59,154 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-22:28:59,363 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-22:28:59,367 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:28:59,843 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201112-22:28:59,861 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.functional_brain_mask_derivative_0".
201112-22:28:59,862 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain".
201112-22:28:59,870 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:29:00,112 nipype.interface INFO:
stderr 2020-11-12T22:29:00.112066:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:29:00,112 nipype.interface INFO:
stderr 2020-11-12T22:29:00.112387:++ Authored by: A cast of thousands
201112-22:29:03,211 nipype.interface INFO:
stderr 2020-11-12T22:29:03.211041:++ Output dataset ./sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:29:03,386 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:29:03,387 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize".
201112-22:29:03,393 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-22:29:05,629 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:29:05,631 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-22:29:05,636 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:29:06,512 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_mean".
201112-22:29:06,514 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-22:29:06,519 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:29:06,767 nipype.interface INFO:
stderr 2020-11-12T22:29:06.767723:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:29:06,768 nipype.interface INFO:
stderr 2020-11-12T22:29:06.768025:++ Authored by: KR Hammett & RW Cox
201112-22:29:07,340 nipype.interface INFO:
stderr 2020-11-12T22:29:07.340067:++ Output dataset ./sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:29:07,490 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.functional_mean".
201112-22:29:07,492 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-1/std_dev".
201112-22:29:07,498 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-1/std_dev/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:29:07,742 nipype.interface INFO:
stderr 2020-11-12T22:29:07.742109:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:29:07,742 nipype.interface INFO:
stderr 2020-11-12T22:29:07.742418:++ Authored by: KR Hammett & RW Cox
201112-22:29:08,262 nipype.interface INFO:
stderr 2020-11-12T22:29:08.262276:++ Output dataset ./sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:29:08,414 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev".
201112-22:29:08,415 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_functional_preprocessed".
201112-22:29:08,422 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:29:08,651 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed".
201112-22:29:08,652 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize".
201112-22:29:08,658 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:29:09,692 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:29:09,693 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_functional_preprocessed_mask".
201112-22:29:09,700 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:29:09,930 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed_mask".
201112-22:29:09,932 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean".
201112-22:29:09,938 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:29:10,186 nipype.interface INFO:
stderr 2020-11-12T22:29:10.186267:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:29:10,186 nipype.interface INFO:
stderr 2020-11-12T22:29:10.186822:++ Authored by: KR Hammett & RW Cox
201112-22:29:10,748 nipype.interface INFO:
stderr 2020-11-12T22:29:10.748327:++ Output dataset ./sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-22:29:10,925 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:29:10,926 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_mean_functional".
201112-22:29:10,934 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:29:11,161 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional".
201112-22:29:11,163 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/norm_motion_params".
201112-22:29:11,169 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:29:11,400 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:29:11,401 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_slice_time_corrected".
201112-22:29:11,409 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:29:11,639 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_slice_time_corrected".
201112-22:29:11,641 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_raw_functional".
201112-22:29:11,648 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:29:11,992 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_raw_functional".
201112-22:29:11,993 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_tgng_run-1/check_func_scan".
201112-22:29:12,25 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:29:12,260 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.check_func_scan".
201112-22:29:12,270 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_rest_run-1/select_scan_params".
201112-22:29:12,299 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:29:12,534 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.select_scan_params".
201112-22:29:12,545 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_rest_run-1/s3_scan_params".
201112-22:29:12,553 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:29:12,782 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.s3_scan_params".
201112-22:29:12,785 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.scan_params_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/scan_params_0".
201112-22:29:12,795 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:29:13,27 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.scan_params_0".
201112-22:29:13,30 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_rest_run-1/selectrest".
201112-22:29:13,63 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:29:13,295 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.selectrest".
201112-22:29:13,304 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_rest_run-1/check_for_s3".
201112-22:29:13,313 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:29:13,645 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.check_for_s3".
201112-22:29:13,646 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-128_ses-1/edit_func_0/_scan_rest_run-1/func_get_idx".
201112-22:29:13,657 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:29:13,891 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.edit_func_0.func_get_idx".
201112-22:29:13,892 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-128_ses-1/edit_func_0/_scan_rest_run-1/func_drop_trs".
201112-22:29:13,901 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-128/ses-1/func/sub-128_ses-1_task-rest_run-1_bold.nii.gz[0..179] -expr "a" -prefix sub-128_ses-1_task-rest_run-1_bold_calc.nii.gz
201112-22:29:14,149 nipype.interface INFO:
stderr 2020-11-12T22:29:14.148940:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:29:14,149 nipype.interface INFO:
stderr 2020-11-12T22:29:14.149295:++ Authored by: A cast of thousands
201112-22:29:21,942 nipype.interface INFO:
stderr 2020-11-12T22:29:21.942796:++ Output dataset ./sub-128_ses-1_task-rest_run-1_bold_calc.nii.gz
201112-22:29:22,121 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.edit_func_0.func_drop_trs".
201112-22:29:22,122 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique".
201112-22:29:22,178 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-128_ses-1_task-rest_run-1_bold_calc.nii.gz
201112-22:29:22,424 nipype.interface INFO:
stderr 2020-11-12T22:29:22.424342:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:29:22,424 nipype.interface INFO:
stderr 2020-11-12T22:29:22.424672:++ Authored by: RW Cox
201112-22:29:22,435 nipype.interface INFO:
stderr 2020-11-12T22:29:22.435041:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-128_ses-1_task-rest_run-1_bold_calc.nii.gz
201112-22:29:22,435 nipype.interface INFO:
stderr 2020-11-12T22:29:22.435917: + deoblique
201112-22:29:22,436 nipype.interface INFO:
stderr 2020-11-12T22:29:22.436182: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-128_ses-1_task-rest_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-128_ses-1_task-rest_run-1_bold_calc.nii.gz in NIFTI storage)
201112-22:29:27,789 nipype.interface INFO:
stderr 2020-11-12T22:29:27.789265:++ 3drefit processed 1 datasets
201112-22:29:27,962 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:29:27,964 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient".
201112-22:29:27,975 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-1_task-rest_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient/sub-128_ses-1_task-rest_run-1_bold_calc.nii.gz
201112-22:29:34,54 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:29:34,55 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI".
201112-22:29:34,64 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-rest_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI/sub-128_ses-1_task-rest_run-1_bold_calc_resample.nii.gz
201112-22:29:34,316 nipype.interface INFO:
stderr 2020-11-12T22:29:34.316329:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:29:34,316 nipype.interface INFO:
stderr 2020-11-12T22:29:34.316657:++ Authored by: KR Hammett & RW Cox
201112-22:29:34,890 nipype.interface INFO:
stderr 2020-11-12T22:29:34.890367:++ Output dataset ./sub-128_ses-1_task-rest_run-1_bold_calc_resample_tstat.nii.gz
201112-22:29:35,38 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:29:35,39 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_generate_ref".
201112-22:29:35,52 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-1_task-rest_run-1_bold_calc_resample.1D -1Dmatrix_save sub-128_ses-1_task-rest_run-1_bold_calc_resample.aff12.1D -prefix sub-128_ses-1_task-rest_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI/sub-128_ses-1_task-rest_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-1_task-rest_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_generate_ref/sub-128_ses-1_task-rest_run-1_bold_calc_resample.nii.gz
201112-22:29:35,294 nipype.interface INFO:
stderr 2020-11-12T22:29:35.294245:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:29:35,294 nipype.interface INFO:
stderr 2020-11-12T22:29:35.294935:++ Authored by: RW Cox
201112-22:29:35,304 nipype.interface INFO:
stderr 2020-11-12T22:29:35.304502:++ Coarse del was 10, replaced with 3
201112-22:31:58,3 nipype.interface INFO:
stderr 2020-11-12T22:31:58.003689:++ Max displacement in automask = 4.29 (mm) at sub-brick 125
201112-22:31:58,4 nipype.interface INFO:
stderr 2020-11-12T22:31:58.004180:++ Max delta displ in automask = 3.13 (mm) at sub-brick 124
201112-22:32:03,208 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:32:03,210 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion".
201112-22:32:03,218 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-rest_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion/sub-128_ses-1_task-rest_run-1_bold_calc_resample_volreg.nii.gz
201112-22:32:03,472 nipype.interface INFO:
stderr 2020-11-12T22:32:03.472224:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:32:03,472 nipype.interface INFO:
stderr 2020-11-12T22:32:03.472879:++ Authored by: KR Hammett & RW Cox
201112-22:32:04,52 nipype.interface INFO:
stderr 2020-11-12T22:32:04.052133:++ Output dataset ./sub-128_ses-1_task-rest_run-1_bold_calc_resample_volreg_tstat.nii.gz
201112-22:32:04,202 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:32:04,203 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt".
201112-22:32:04,212 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient/sub-128_ses-1_task-rest_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt/sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion/sub-128_ses-1_task-rest_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:32:48,880 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:32:48,892 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/calculate_FDJ".
201112-22:32:48,901 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:32:49,129 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:32:49,131 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_frame_wise_displacement_jenkinson".
201112-22:32:49,140 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:32:49,367 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_jenkinson".
201112-22:32:49,369 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_max_displacement".
201112-22:32:49,380 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:32:49,611 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_max_displacement".
201112-22:32:49,613 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_coordinate_transformation".
201112-22:32:49,641 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:32:49,921 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_coordinate_transformation".
201112-22:32:49,935 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull".
201112-22:32:49,945 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull/sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf.nii.gz
201112-22:32:50,199 nipype.interface INFO:
stderr 2020-11-12T22:32:50.199766:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:32:50,200 nipype.interface INFO:
stderr 2020-11-12T22:32:50.200135:++ Authored by: KR Hammett & RW Cox
201112-22:32:50,819 nipype.interface INFO:
stderr 2020-11-12T22:32:50.819743:++ Output dataset ./sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat.nii.gz
201112-22:32:50,969 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:32:50,970 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass".
201112-22:32:50,980 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull/sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:32:52,782 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:32:52,784 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate".
201112-22:32:52,793 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate/sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:32:53,313 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:32:53,315 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_mask".
201112-22:32:53,323 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate/sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_mask/sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:32:53,731 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:32:53,733 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/unifize".
201112-22:32:53,742 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/unifize/sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:32:53,990 nipype.interface INFO:
stderr 2020-11-12T22:32:53.990721:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:33:48,314 nipype.interface INFO:
stderr 2020-11-12T22:33:48.314175: + Pre-processing: IAV..UW[s3394]Im
201112-22:33:48,327 nipype.interface INFO:
stderr 2020-11-12T22:33:48.327049:++ Output dataset ./uni.nii.gz
201112-22:33:48,327 nipype.interface INFO:
stderr 2020-11-12T22:33:48.327656:++ ===== Elapsed = 54.3 sec
201112-22:33:48,501 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:33:48,502 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass".
201112-22:33:48,511 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:33:48,760 nipype.interface INFO:
stderr 2020-11-12T22:33:48.760241:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:33:48,760 nipype.interface INFO:
stderr 2020-11-12T22:33:48.760886:++ Authored by: Emperor Zhark
201112-22:33:48,763 nipype.interface INFO:
stderr 2020-11-12T22:33:48.763542:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:33:48,768 nipype.interface INFO:
stderr 2020-11-12T22:33:48.768586:++ Forming automask
201112-22:33:48,769 nipype.interface INFO:
stderr 2020-11-12T22:33:48.769890: + Fixed clip level = 462.606018
201112-22:33:48,772 nipype.interface INFO:
stderr 2020-11-12T22:33:48.772971: + Used gradual clip level = 423.131165 .. 523.786987
201112-22:33:48,773 nipype.interface INFO:
stderr 2020-11-12T22:33:48.773175: + Number voxels above clip level = 16941
201112-22:33:48,773 nipype.interface INFO:
stderr 2020-11-12T22:33:48.773332: + Clustering voxels ...
201112-22:33:48,774 nipype.interface INFO:
stderr 2020-11-12T22:33:48.774389: + Largest cluster has 16941 voxels
201112-22:33:48,775 nipype.interface INFO:
stderr 2020-11-12T22:33:48.775482: + Clustering voxels ...
201112-22:33:48,776 nipype.interface INFO:
stderr 2020-11-12T22:33:48.776296: + Largest cluster has 16677 voxels
201112-22:33:48,780 nipype.interface INFO:
stderr 2020-11-12T22:33:48.780031: + Filled 352 voxels in small holes; now have 17029 voxels
201112-22:33:48,782 nipype.interface INFO:
stderr 2020-11-12T22:33:48.782235: + Filled 1 voxels in large holes; now have 17030 voxels
201112-22:33:48,783 nipype.interface INFO:
stderr 2020-11-12T22:33:48.783266: + Clustering voxels ...
201112-22:33:48,784 nipype.interface INFO:
stderr 2020-11-12T22:33:48.784081: + Largest cluster has 17029 voxels
201112-22:33:48,784 nipype.interface INFO:
stderr 2020-11-12T22:33:48.784308: + Clustering non-brain voxels ...
201112-22:33:48,784 nipype.interface INFO:
stderr 2020-11-12T22:33:48.784465: + Clustering voxels ...
201112-22:33:48,787 nipype.interface INFO:
stderr 2020-11-12T22:33:48.787514: + Largest cluster has 118139 voxels
201112-22:33:48,787 nipype.interface INFO:
stderr 2020-11-12T22:33:48.787840: + Mask now has 17029 voxels
201112-22:33:48,788 nipype.interface INFO:
stderr 2020-11-12T22:33:48.787997:++ Dilating automask
201112-22:33:48,794 nipype.interface INFO:
stderr 2020-11-12T22:33:48.794839: + Clustering voxels ...
201112-22:33:48,797 nipype.interface INFO:
stderr 2020-11-12T22:33:48.797363: + Largest cluster has 113914 voxels
201112-22:33:48,797 nipype.interface INFO:
stderr 2020-11-12T22:33:48.797703:++ 21254 voxels in the mask [out of 135168: 15.72%]
201112-22:33:48,797 nipype.interface INFO:
stderr 2020-11-12T22:33:48.797875:++ first 11 x-planes are zero [from R]
201112-22:33:48,798 nipype.interface INFO:
stderr 2020-11-12T22:33:48.798045:++ last 13 x-planes are zero [from L]
201112-22:33:48,798 nipype.interface INFO:
stderr 2020-11-12T22:33:48.798193:++ first 7 y-planes are zero [from P]
201112-22:33:48,798 nipype.interface INFO:
stderr 2020-11-12T22:33:48.798349:++ last 12 y-planes are zero [from A]
201112-22:33:48,798 nipype.interface INFO:
stderr 2020-11-12T22:33:48.798494:++ first 0 z-planes are zero [from I]
201112-22:33:48,798 nipype.interface INFO:
stderr 2020-11-12T22:33:48.798638:++ last 4 z-planes are zero [from S]
201112-22:33:48,802 nipype.interface INFO:
stderr 2020-11-12T22:33:48.802547:++ Output dataset ./uni_mask.nii.gz
201112-22:33:48,802 nipype.interface INFO:
stderr 2020-11-12T22:33:48.802721:++ applying mask to original data
201112-22:33:48,803 nipype.interface INFO:
stderr 2020-11-12T22:33:48.803365:++ Writing masked data
201112-22:33:48,814 nipype.interface INFO:
stderr 2020-11-12T22:33:48.814659:++ Output dataset ./uni_masked.nii.gz
201112-22:33:48,815 nipype.interface INFO:
stderr 2020-11-12T22:33:48.814998:++ CPU time = 0.000000 sec
201112-22:33:48,964 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:33:48,966 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks".
201112-22:33:48,974 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:33:49,369 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:33:49,371 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/cal_DVARS".
201112-22:33:49,380 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-22:33:50,164 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-22:33:50,166 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_extract_brain".
201112-22:33:50,176 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt/sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:33:50,420 nipype.interface INFO:
stderr 2020-11-12T22:33:50.420665:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:33:50,420 nipype.interface INFO:
stderr 2020-11-12T22:33:50.420970:++ Authored by: A cast of thousands
201112-22:33:53,728 nipype.interface INFO:
stderr 2020-11-12T22:33:53.728041:++ Output dataset ./sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:33:53,901 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:33:53,902 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize".
201112-22:33:53,910 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_extract_brain/sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-22:33:56,123 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:33:56,125 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mask_normalize".
201112-22:33:56,133 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mask_normalize/sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:33:57,342 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:33:57,347 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean".
201112-22:33:57,356 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean/sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:33:57,605 nipype.interface INFO:
stderr 2020-11-12T22:33:57.605072:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:33:57,605 nipype.interface INFO:
stderr 2020-11-12T22:33:57.605673:++ Authored by: KR Hammett & RW Cox
201112-22:33:57,968 nipype.interface INFO:
stderr 2020-11-12T22:33:57.968206:++ Output dataset ./sub-128_ses-1_task-rest_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-22:33:58,144 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:33:58,145 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/norm_motion_params".
201112-22:33:58,153 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:33:58,384 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:33:58,385 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_motion_0/_scan_rest_run-1/motion_plot".
201112-22:33:58,391 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-22:33:58,836 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_motion_0.motion_plot".
201112-22:33:58,837 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_qc___movement_trans_plot".
201112-22:33:58,846 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:33:59,59 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___movement_trans_plot/_scan_rest_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/movement_trans_plot/_scan_rest_run-1/motion_trans_plot.png
201112-22:33:59,76 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_trans_plot".
201112-22:33:59,77 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_qc___movement_rot_plot".
201112-22:33:59,86 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:33:59,299 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___movement_rot_plot/_scan_rest_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/movement_rot_plot/_scan_rest_run-1/motion_rot_plot.png
201112-22:33:59,319 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_rot_plot".
201112-22:33:59,320 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/calc_motion_parameters".
201112-22:33:59,332 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:33:59,564 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-22:33:59,566 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_motion_params".
201112-22:33:59,575 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:33:59,810 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_params".
201112-22:33:59,812 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/calculate_FD".
201112-22:33:59,819 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-22:34:00,52 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-22:34:00,54 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_frame_wise_displacement_power".
201112-22:34:00,63 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:34:00,296 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_power".
201112-22:34:00,298 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/calc_power_parameters".
201112-22:34:00,306 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:34:00,541 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-22:34:00,543 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_power_params".
201112-22:34:00,551 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:34:00,783 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_power_params".
201112-22:34:00,784 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_movement_parameters".
201112-22:34:00,794 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:34:01,23 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_movement_parameters".
201112-22:34:01,25 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/func_despiked_0".
201112-22:34:01,34 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-128_ses-1_task-rest_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/func_despiked_0/sub-128_ses-1_task-rest_run-1_bold_calc.nii.gz
201112-22:34:01,280 nipype.interface INFO:
stderr 2020-11-12T22:34:01.280472:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:34:01,280 nipype.interface INFO:
stderr 2020-11-12T22:34:01.280846:++ Authored by: RW Cox
201112-22:34:01,283 nipype.interface INFO:
stderr 2020-11-12T22:34:01.283118:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:34:01,283 nipype.interface INFO:
stderr 2020-11-12T22:34:01.283118: such as /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/func_despiked_0/sub-128_ses-1_task-rest_run-1_bold_calc.nii.gz,
201112-22:34:01,283 nipype.interface INFO:
stderr 2020-11-12T22:34:01.283118: or viewing/combining it with volumes of differing obliquity,
201112-22:34:01,283 nipype.interface INFO:
stderr 2020-11-12T22:34:01.283118: you should consider running:
201112-22:34:01,283 nipype.interface INFO:
stderr 2020-11-12T22:34:01.283118: 3dWarp -deoblique
201112-22:34:01,283 nipype.interface INFO:
stderr 2020-11-12T22:34:01.283118: on this and other oblique datasets in the same session.
201112-22:34:01,283 nipype.interface INFO:
stderr 2020-11-12T22:34:01.283118: See 3dWarp -help for details.
201112-22:34:01,284 nipype.interface INFO:
stderr 2020-11-12T22:34:01.284020:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/func_despiked_0/sub-128_ses-1_task-rest_run-1_bold_calc.nii.gz is 3.899982 degrees from plumb.
201112-22:34:01,284 nipype.interface INFO:
stderr 2020-11-12T22:34:01.284209:++ Input dataset is in short format, but output will be in float format
201112-22:34:01,284 nipype.interface INFO:
stderr 2020-11-12T22:34:01.284390:++ ignoring first 0 time points, using last 180
201112-22:34:01,284 nipype.interface INFO:
stderr 2020-11-12T22:34:01.284568:++ using 180 time points => -corder 6
201112-22:34:01,284 nipype.interface INFO:
stderr 2020-11-12T22:34:01.284736:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/func_despiked_0/sub-128_ses-1_task-rest_run-1_bold_calc.nii.gz
201112-22:34:01,876 nipype.interface INFO:
stderr 2020-11-12T22:34:01.876301:++ 19631 voxels in the automask [out of 135168 in dataset]
201112-22:34:01,882 nipype.interface INFO:
stderr 2020-11-12T22:34:01.882191:++ 37731 voxels in the dilated automask [out of 135168 in dataset]
201112-22:34:01,897 nipype.interface INFO:
stderr 2020-11-12T22:34:01.897124:++ Procesing time series with OLD model fit algorithm
201112-22:34:01,897 nipype.interface INFO:
stderr 2020-11-12T22:34:01.897332:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-22:34:01,897 nipype.interface INFO:
stderr 2020-11-12T22:34:01.897511: + [ 3.457% .. 0.072% of normal distribution]
201112-22:34:01,897 nipype.interface INFO:
stderr 2020-11-12T22:34:01.897667: + [ 8.839% .. 3.125% of Laplace distribution]
201112-22:34:01,897 nipype.interface INFO:
stderr 2020-11-12T22:34:01.897829:++ start OpenMP thread #0
201112-22:34:10,744 nipype.interface INFO:
stderr 2020-11-12T22:34:10.744527:...................
201112-22:34:10,745 nipype.interface INFO:
stderr 2020-11-12T22:34:10.745003:++ Elapsed despike time = 8s 847ms
201112-22:34:10,745 nipype.interface INFO:
stderr 2020-11-12T22:34:10.745154:
201112-22:34:10,746 nipype.interface INFO:
stderr 2020-11-12T22:34:10.746262:++ FINAL: 6791580 data points, 814643 edits [11.995%], 380367 big edits [5.601%]
201112-22:34:14,44 nipype.interface INFO:
stderr 2020-11-12T22:34:14.044746:++ Output dataset ./sub-128_ses-1_task-rest_run-1_bold_calc_despike.nii.gz
201112-22:34:14,234 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_despiked_0".
201112-22:34:14,235 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_rest_run-1/slice_timing".
201112-22:34:14,246 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:34:14,247 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_rest_run-1/slice_timing/sub-128_ses-1_task-rest_run-1_bold_calc_despike.nii.gz
201112-22:34:14,460 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:34:14,499 nipype.interface INFO:
stderr 2020-11-12T22:34:14.499589:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:34:14,504 nipype.interface INFO:
stderr 2020-11-12T22:34:14.504052:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:34:14,504 nipype.interface INFO:
stderr 2020-11-12T22:34:14.504052: such as /outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_rest_run-1/slice_timing/sub-128_ses-1_task-rest_run-1_bold_calc_despike.nii.gz,
201112-22:34:14,504 nipype.interface INFO:
stderr 2020-11-12T22:34:14.504052: or viewing/combining it with volumes of differing obliquity,
201112-22:34:14,504 nipype.interface INFO:
stderr 2020-11-12T22:34:14.504052: you should consider running:
201112-22:34:14,504 nipype.interface INFO:
stderr 2020-11-12T22:34:14.504052: 3dWarp -deoblique
201112-22:34:14,504 nipype.interface INFO:
stderr 2020-11-12T22:34:14.504052: on this and other oblique datasets in the same session.
201112-22:34:14,505 nipype.interface INFO:
stderr 2020-11-12T22:34:14.504052: See 3dWarp -help for details.
201112-22:34:14,505 nipype.interface INFO:
stderr 2020-11-12T22:34:14.505252:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_rest_run-1/slice_timing/sub-128_ses-1_task-rest_run-1_bold_calc_despike.nii.gz is 3.899982 degrees from plumb.
201112-22:34:19,162 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_slice_timing_correction_0.slice_timing".
201112-22:34:19,164 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique".
201112-22:34:19,216 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift.nii.gz
201112-22:34:19,462 nipype.interface INFO:
stderr 2020-11-12T22:34:19.462536:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:34:19,462 nipype.interface INFO:
stderr 2020-11-12T22:34:19.462863:++ Authored by: RW Cox
201112-22:34:19,473 nipype.interface INFO:
stderr 2020-11-12T22:34:19.473320:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift.nii.gz
201112-22:34:19,474 nipype.interface INFO:
stderr 2020-11-12T22:34:19.474232: + deoblique
201112-22:34:19,474 nipype.interface INFO:
stderr 2020-11-12T22:34:19.474889: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-22:34:21,716 nipype.interface INFO:
stderr 2020-11-12T22:34:21.716139:++ 3drefit processed 1 datasets
201112-22:34:21,888 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:34:21,890 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient".
201112-22:34:21,899 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift.nii.gz
201112-22:34:24,853 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:34:24,855 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI".
201112-22:34:24,862 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-22:34:25,101 nipype.interface INFO:
stderr 2020-11-12T22:34:25.101657:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:34:25,101 nipype.interface INFO:
stderr 2020-11-12T22:34:25.101950:++ Authored by: KR Hammett & RW Cox
201112-22:34:25,830 nipype.interface INFO:
stderr 2020-11-12T22:34:25.830001:++ Output dataset ./sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-22:34:25,985 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:34:25,986 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_generate_ref".
201112-22:34:25,997 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_generate_ref/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-22:34:26,239 nipype.interface INFO:
stderr 2020-11-12T22:34:26.239307:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:34:26,239 nipype.interface INFO:
stderr 2020-11-12T22:34:26.239713:++ Authored by: RW Cox
201112-22:34:26,246 nipype.interface INFO:
stderr 2020-11-12T22:34:26.246612:++ Coarse del was 10, replaced with 3
201112-22:36:48,466 nipype.interface INFO:
stderr 2020-11-12T22:36:48.466766:++ Max displacement in automask = 1.90 (mm) at sub-brick 168
201112-22:36:48,467 nipype.interface INFO:
stderr 2020-11-12T22:36:48.467330:++ Max delta displ in automask = 1.02 (mm) at sub-brick 84
201112-22:36:54,893 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:36:54,894 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion".
201112-22:36:54,902 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-22:36:55,149 nipype.interface INFO:
stderr 2020-11-12T22:36:55.148996:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:36:55,149 nipype.interface INFO:
stderr 2020-11-12T22:36:55.149292:++ Authored by: KR Hammett & RW Cox
201112-22:36:56,185 nipype.interface INFO:
stderr 2020-11-12T22:36:56.185366:++ Output dataset ./sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-22:36:56,361 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:36:56,362 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt".
201112-22:36:56,372 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:37:38,236 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:37:38,247 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_motion_correct".
201112-22:37:38,256 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:37:38,485 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_correct".
201112-22:37:38,486 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull".
201112-22:37:38,497 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-22:37:38,747 nipype.interface INFO:
stderr 2020-11-12T22:37:38.747255:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:37:38,747 nipype.interface INFO:
stderr 2020-11-12T22:37:38.747880:++ Authored by: KR Hammett & RW Cox
201112-22:37:39,519 nipype.interface INFO:
stderr 2020-11-12T22:37:39.519852:++ Output dataset ./sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-22:37:39,674 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:37:39,676 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass".
201112-22:37:39,683 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:37:41,494 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:37:41,495 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate".
201112-22:37:41,504 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:37:42,23 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:37:42,25 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_mask".
201112-22:37:42,33 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_mask/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:37:42,439 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:37:42,441 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/unifize".
201112-22:37:42,449 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/unifize/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:37:42,691 nipype.interface INFO:
stderr 2020-11-12T22:37:42.691592:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:38:37,160 nipype.interface INFO:
stderr 2020-11-12T22:38:37.160280: + Pre-processing: IAV..UW[s3367]Im
201112-22:38:37,171 nipype.interface INFO:
stderr 2020-11-12T22:38:37.171706:++ Output dataset ./uni.nii.gz
201112-22:38:37,172 nipype.interface INFO:
stderr 2020-11-12T22:38:37.171981:++ ===== Elapsed = 54.5 sec
201112-22:38:37,343 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:38:37,344 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass".
201112-22:38:37,353 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:38:37,599 nipype.interface INFO:
stderr 2020-11-12T22:38:37.599682:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:38:37,600 nipype.interface INFO:
stderr 2020-11-12T22:38:37.600020:++ Authored by: Emperor Zhark
201112-22:38:37,602 nipype.interface INFO:
stderr 2020-11-12T22:38:37.602860:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:38:37,608 nipype.interface INFO:
stderr 2020-11-12T22:38:37.608225:++ Forming automask
201112-22:38:37,609 nipype.interface INFO:
stderr 2020-11-12T22:38:37.609531: + Fixed clip level = 460.604401
201112-22:38:37,612 nipype.interface INFO:
stderr 2020-11-12T22:38:37.612606: + Used gradual clip level = 420.917389 .. 521.778442
201112-22:38:37,612 nipype.interface INFO:
stderr 2020-11-12T22:38:37.612806: + Number voxels above clip level = 16955
201112-22:38:37,612 nipype.interface INFO:
stderr 2020-11-12T22:38:37.612963: + Clustering voxels ...
201112-22:38:37,613 nipype.interface INFO:
stderr 2020-11-12T22:38:37.613764: + Largest cluster has 16955 voxels
201112-22:38:37,614 nipype.interface INFO:
stderr 2020-11-12T22:38:37.614845: + Clustering voxels ...
201112-22:38:37,615 nipype.interface INFO:
stderr 2020-11-12T22:38:37.615646: + Largest cluster has 16684 voxels
201112-22:38:37,618 nipype.interface INFO:
stderr 2020-11-12T22:38:37.618906: + Filled 365 voxels in small holes; now have 17049 voxels
201112-22:38:37,621 nipype.interface INFO:
stderr 2020-11-12T22:38:37.621076: + Filled 1 voxels in large holes; now have 17050 voxels
201112-22:38:37,622 nipype.interface INFO:
stderr 2020-11-12T22:38:37.622098: + Clustering voxels ...
201112-22:38:37,623 nipype.interface INFO:
stderr 2020-11-12T22:38:37.623141: + Largest cluster has 17049 voxels
201112-22:38:37,623 nipype.interface INFO:
stderr 2020-11-12T22:38:37.623369: + Clustering non-brain voxels ...
201112-22:38:37,623 nipype.interface INFO:
stderr 2020-11-12T22:38:37.623730: + Clustering voxels ...
201112-22:38:37,626 nipype.interface INFO:
stderr 2020-11-12T22:38:37.626792: + Largest cluster has 118119 voxels
201112-22:38:37,627 nipype.interface INFO:
stderr 2020-11-12T22:38:37.627114: + Mask now has 17049 voxels
201112-22:38:37,627 nipype.interface INFO:
stderr 2020-11-12T22:38:37.627264:++ Dilating automask
201112-22:38:37,634 nipype.interface INFO:
stderr 2020-11-12T22:38:37.634051: + Clustering voxels ...
201112-22:38:37,636 nipype.interface INFO:
stderr 2020-11-12T22:38:37.636556: + Largest cluster has 113886 voxels
201112-22:38:37,636 nipype.interface INFO:
stderr 2020-11-12T22:38:37.636882:++ 21282 voxels in the mask [out of 135168: 15.74%]
201112-22:38:37,637 nipype.interface INFO:
stderr 2020-11-12T22:38:37.637053:++ first 11 x-planes are zero [from R]
201112-22:38:37,637 nipype.interface INFO:
stderr 2020-11-12T22:38:37.637219:++ last 13 x-planes are zero [from L]
201112-22:38:37,637 nipype.interface INFO:
stderr 2020-11-12T22:38:37.637367:++ first 7 y-planes are zero [from P]
201112-22:38:37,637 nipype.interface INFO:
stderr 2020-11-12T22:38:37.637536:++ last 12 y-planes are zero [from A]
201112-22:38:37,637 nipype.interface INFO:
stderr 2020-11-12T22:38:37.637669:++ first 0 z-planes are zero [from I]
201112-22:38:37,637 nipype.interface INFO:
stderr 2020-11-12T22:38:37.637812:++ last 4 z-planes are zero [from S]
201112-22:38:37,641 nipype.interface INFO:
stderr 2020-11-12T22:38:37.641851:++ Output dataset ./uni_mask.nii.gz
201112-22:38:37,642 nipype.interface INFO:
stderr 2020-11-12T22:38:37.642028:++ applying mask to original data
201112-22:38:37,642 nipype.interface INFO:
stderr 2020-11-12T22:38:37.642683:++ Writing masked data
201112-22:38:37,653 nipype.interface INFO:
stderr 2020-11-12T22:38:37.653316:++ Output dataset ./uni_masked.nii.gz
201112-22:38:37,653 nipype.interface INFO:
stderr 2020-11-12T22:38:37.653663:++ CPU time = 0.000000 sec
201112-22:38:37,805 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:38:37,806 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks".
201112-22:38:37,814 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:38:38,217 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:38:38,219 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-22:38:38,227 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-22:38:38,457 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-22:38:38,459 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-22:38:38,468 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:38:38,712 nipype.interface INFO:
stderr 2020-11-12T22:38:38.712041:++ no -frac option: defaulting to -union
201112-22:38:38,712 nipype.interface INFO:
stderr 2020-11-12T22:38:38.712354:++ processing 1 input dataset(s), NN=2...
201112-22:38:38,712 nipype.interface INFO:
stderr 2020-11-12T22:38:38.712547:++ padding all datasets by 0 (for dilations)
201112-22:38:38,717 nipype.interface INFO:
stderr 2020-11-12T22:38:38.717276:++ frac 0 over 1 volumes gives min count 0
201112-22:38:38,717 nipype.interface INFO:
stderr 2020-11-12T22:38:38.717655:++ voxel limits: 0 clipped, 21259 survived, 113909 were zero
201112-22:38:38,717 nipype.interface INFO:
stderr 2020-11-12T22:38:38.717831:++ writing result sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-22:38:38,722 nipype.interface INFO:
stderr 2020-11-12T22:38:38.722203:++ Output dataset ./sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-22:38:38,873 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-22:38:38,874 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_functional_brain_mask".
201112-22:38:38,884 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:38:39,109 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask".
201112-22:38:39,111 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/functional_brain_mask_derivative_0".
201112-22:38:39,117 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-22:38:39,330 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-22:38:39,337 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:38:39,855 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201112-22:38:39,872 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.functional_brain_mask_derivative_0".
201112-22:38:39,874 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_extract_brain".
201112-22:38:39,883 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:38:40,123 nipype.interface INFO:
stderr 2020-11-12T22:38:40.123340:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:38:40,123 nipype.interface INFO:
stderr 2020-11-12T22:38:40.123654:++ Authored by: A cast of thousands
201112-22:38:43,716 nipype.interface INFO:
stderr 2020-11-12T22:38:43.716156:++ Output dataset ./sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:38:43,893 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:38:43,894 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize".
201112-22:38:43,903 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_extract_brain/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-22:38:46,223 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:38:46,225 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-22:38:46,233 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:38:47,220 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_mean".
201112-22:38:47,222 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-22:38:47,229 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:38:47,478 nipype.interface INFO:
stderr 2020-11-12T22:38:47.478724:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:38:47,479 nipype.interface INFO:
stderr 2020-11-12T22:38:47.479217:++ Authored by: KR Hammett & RW Cox
201112-22:38:48,187 nipype.interface INFO:
stderr 2020-11-12T22:38:48.187118:++ Output dataset ./sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:38:48,343 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.functional_mean".
201112-22:38:48,344 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_rest_run-1/std_dev".
201112-22:38:48,354 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_rest_run-1/std_dev/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:38:48,592 nipype.interface INFO:
stderr 2020-11-12T22:38:48.592083:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:38:48,592 nipype.interface INFO:
stderr 2020-11-12T22:38:48.592481:++ Authored by: KR Hammett & RW Cox
201112-22:38:49,217 nipype.interface INFO:
stderr 2020-11-12T22:38:49.217629:++ Output dataset ./sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:38:49,396 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev".
201112-22:38:49,398 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_functional_preprocessed".
201112-22:38:49,408 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:38:49,641 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed".
201112-22:38:49,643 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mask_normalize".
201112-22:38:49,651 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mask_normalize/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:38:50,934 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:38:50,936 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_functional_preprocessed_mask".
201112-22:38:50,945 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:38:51,175 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed_mask".
201112-22:38:51,177 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean".
201112-22:38:51,186 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:38:51,438 nipype.interface INFO:
stderr 2020-11-12T22:38:51.438851:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:38:51,439 nipype.interface INFO:
stderr 2020-11-12T22:38:51.439202:++ Authored by: KR Hammett & RW Cox
201112-22:38:52,125 nipype.interface INFO:
stderr 2020-11-12T22:38:52.125590:++ Output dataset ./sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-22:38:52,292 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:38:52,294 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_mean_functional".
201112-22:38:52,303 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:38:52,533 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional".
201112-22:38:52,535 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/norm_motion_params".
201112-22:38:52,543 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:38:52,774 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:38:52,775 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_slice_time_corrected".
201112-22:38:52,784 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:38:53,10 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_slice_time_corrected".
201112-22:38:53,12 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_raw_functional".
201112-22:38:53,26 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:38:53,394 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_raw_functional".
201112-22:38:53,395 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_rest_run-1/check_func_scan".
201112-22:38:53,434 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:38:53,665 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.check_func_scan".
201112-22:38:53,675 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_ms_run-1/select_scan_params".
201112-22:38:53,706 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:38:53,943 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.select_scan_params".
201112-22:38:53,954 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_ms_run-1/s3_scan_params".
201112-22:38:53,965 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:38:54,197 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.s3_scan_params".
201112-22:38:54,200 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.scan_params_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/scan_params_0".
201112-22:38:54,211 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:38:54,441 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.scan_params_0".
201112-22:38:54,444 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_ms_run-1/selectrest".
201112-22:38:54,478 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:38:54,714 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.selectrest".
201112-22:38:54,724 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_ms_run-1/check_for_s3".
201112-22:38:54,732 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:38:55,72 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.check_for_s3".
201112-22:38:55,74 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-128_ses-1/edit_func_0/_scan_ms_run-1/func_get_idx".
201112-22:38:55,83 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:38:55,314 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.edit_func_0.func_get_idx".
201112-22:38:55,315 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-128_ses-1/edit_func_0/_scan_ms_run-1/func_drop_trs".
201112-22:38:55,324 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-128/ses-1/func/sub-128_ses-1_task-ms_run-1_bold.nii.gz[0..142] -expr "a" -prefix sub-128_ses-1_task-ms_run-1_bold_calc.nii.gz
201112-22:38:55,569 nipype.interface INFO:
stderr 2020-11-12T22:38:55.569718:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:38:55,570 nipype.interface INFO:
stderr 2020-11-12T22:38:55.570112:++ Authored by: A cast of thousands
201112-22:39:01,733 nipype.interface INFO:
stderr 2020-11-12T22:39:01.733749:++ Output dataset ./sub-128_ses-1_task-ms_run-1_bold_calc.nii.gz
201112-22:39:01,904 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.edit_func_0.func_drop_trs".
201112-22:39:01,905 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique".
201112-22:39:01,955 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-128_ses-1_task-ms_run-1_bold_calc.nii.gz
201112-22:39:02,202 nipype.interface INFO:
stderr 2020-11-12T22:39:02.202858:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:39:02,203 nipype.interface INFO:
stderr 2020-11-12T22:39:02.203197:++ Authored by: RW Cox
201112-22:39:02,213 nipype.interface INFO:
stderr 2020-11-12T22:39:02.213573:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-128_ses-1_task-ms_run-1_bold_calc.nii.gz
201112-22:39:02,214 nipype.interface INFO:
stderr 2020-11-12T22:39:02.214653: + deoblique
201112-22:39:02,214 nipype.interface INFO:
stderr 2020-11-12T22:39:02.214940: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-128_ses-1_task-ms_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-128_ses-1_task-ms_run-1_bold_calc.nii.gz in NIFTI storage)
201112-22:39:06,341 nipype.interface INFO:
stderr 2020-11-12T22:39:06.341339:++ 3drefit processed 1 datasets
201112-22:39:06,510 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:39:06,512 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_reorient".
201112-22:39:06,521 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-1_task-ms_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_reorient/sub-128_ses-1_task-ms_run-1_bold_calc.nii.gz
201112-22:39:11,334 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:39:11,336 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_RPI".
201112-22:39:11,343 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-ms_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_RPI/sub-128_ses-1_task-ms_run-1_bold_calc_resample.nii.gz
201112-22:39:11,588 nipype.interface INFO:
stderr 2020-11-12T22:39:11.588513:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:39:11,588 nipype.interface INFO:
stderr 2020-11-12T22:39:11.588886:++ Authored by: KR Hammett & RW Cox
201112-22:39:12,90 nipype.interface INFO:
stderr 2020-11-12T22:39:12.090106:++ Output dataset ./sub-128_ses-1_task-ms_run-1_bold_calc_resample_tstat.nii.gz
201112-22:39:12,241 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:39:12,242 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_generate_ref".
201112-22:39:12,252 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-1_task-ms_run-1_bold_calc_resample.1D -1Dmatrix_save sub-128_ses-1_task-ms_run-1_bold_calc_resample.aff12.1D -prefix sub-128_ses-1_task-ms_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_RPI/sub-128_ses-1_task-ms_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-1_task-ms_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_generate_ref/sub-128_ses-1_task-ms_run-1_bold_calc_resample.nii.gz
201112-22:39:12,492 nipype.interface INFO:
stderr 2020-11-12T22:39:12.492891:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:39:12,493 nipype.interface INFO:
stderr 2020-11-12T22:39:12.493208:++ Authored by: RW Cox
201112-22:39:12,505 nipype.interface INFO:
stderr 2020-11-12T22:39:12.505509:++ Coarse del was 10, replaced with 3
201112-22:41:11,536 nipype.interface INFO:
stderr 2020-11-12T22:41:11.536062:++ Max displacement in automask = 0.56 (mm) at sub-brick 3
201112-22:41:11,536 nipype.interface INFO:
stderr 2020-11-12T22:41:11.536621:++ Max delta displ in automask = 0.53 (mm) at sub-brick 74
201112-22:41:15,570 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:41:15,572 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_motion".
201112-22:41:15,579 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-ms_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_motion/sub-128_ses-1_task-ms_run-1_bold_calc_resample_volreg.nii.gz
201112-22:41:15,827 nipype.interface INFO:
stderr 2020-11-12T22:41:15.827794:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:41:15,828 nipype.interface INFO:
stderr 2020-11-12T22:41:15.828136:++ Authored by: KR Hammett & RW Cox
201112-22:41:16,335 nipype.interface INFO:
stderr 2020-11-12T22:41:16.335098:++ Output dataset ./sub-128_ses-1_task-ms_run-1_bold_calc_resample_volreg_tstat.nii.gz
201112-22:41:16,486 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:41:16,487 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_motion_correct_mcflirt".
201112-22:41:16,496 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_reorient/sub-128_ses-1_task-ms_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_motion_correct_mcflirt/sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_motion/sub-128_ses-1_task-ms_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:41:42,875 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:41:42,884 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/calculate_FDJ".
201112-22:41:42,893 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:41:43,121 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:41:43,122 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_frame_wise_displacement_jenkinson".
201112-22:41:43,132 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:41:43,359 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_jenkinson".
201112-22:41:43,361 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_max_displacement".
201112-22:41:43,372 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:41:43,600 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_max_displacement".
201112-22:41:43,601 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_coordinate_transformation".
201112-22:41:43,625 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:41:43,894 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_coordinate_transformation".
201112-22:41:43,905 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_mean_skull".
201112-22:41:43,915 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_mean_skull/sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf.nii.gz
201112-22:41:44,167 nipype.interface INFO:
stderr 2020-11-12T22:41:44.167249:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:41:44,167 nipype.interface INFO:
stderr 2020-11-12T22:41:44.167853:++ Authored by: KR Hammett & RW Cox
201112-22:41:44,721 nipype.interface INFO:
stderr 2020-11-12T22:41:44.721240:++ Output dataset ./sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat.nii.gz
201112-22:41:44,882 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:41:44,883 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass".
201112-22:41:44,891 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_mean_skull/sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:41:46,713 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:41:46,714 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_dilate".
201112-22:41:46,723 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_dilate/sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:41:47,381 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:41:47,383 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_mask".
201112-22:41:47,392 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_dilate/sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_mask/sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:41:47,804 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:41:47,805 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/unifize".
201112-22:41:47,814 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/unifize/sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:41:48,61 nipype.interface INFO:
stderr 2020-11-12T22:41:48.061095:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:43:01,793 nipype.interface INFO:
stderr 2020-11-12T22:43:01.793840: + Pre-processing: IAV..UW[s4738]Im
201112-22:43:01,810 nipype.interface INFO:
stderr 2020-11-12T22:43:01.810255:++ Output dataset ./uni.nii.gz
201112-22:43:01,810 nipype.interface INFO:
stderr 2020-11-12T22:43:01.810483:++ ===== Elapsed = 73.7 sec
201112-22:43:01,982 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:43:01,983 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass".
201112-22:43:01,991 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:43:02,239 nipype.interface INFO:
stderr 2020-11-12T22:43:02.239226:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:43:02,240 nipype.interface INFO:
stderr 2020-11-12T22:43:02.240010:++ Authored by: Emperor Zhark
201112-22:43:02,242 nipype.interface INFO:
stderr 2020-11-12T22:43:02.242766:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:43:02,248 nipype.interface INFO:
stderr 2020-11-12T22:43:02.248425:++ Forming automask
201112-22:43:02,249 nipype.interface INFO:
stderr 2020-11-12T22:43:02.249811: + Fixed clip level = 434.090210
201112-22:43:02,253 nipype.interface INFO:
stderr 2020-11-12T22:43:02.253094: + Used gradual clip level = 365.359924 .. 488.188690
201112-22:43:02,253 nipype.interface INFO:
stderr 2020-11-12T22:43:02.253303: + Number voxels above clip level = 29633
201112-22:43:02,253 nipype.interface INFO:
stderr 2020-11-12T22:43:02.253471: + Clustering voxels ...
201112-22:43:02,254 nipype.interface INFO:
stderr 2020-11-12T22:43:02.254578: + Largest cluster has 29631 voxels
201112-22:43:02,255 nipype.interface INFO:
stderr 2020-11-12T22:43:02.255951: + Clustering voxels ...
201112-22:43:02,257 nipype.interface INFO:
stderr 2020-11-12T22:43:02.257062: + Largest cluster has 29132 voxels
201112-22:43:02,260 nipype.interface INFO:
stderr 2020-11-12T22:43:02.260651: + Filled 934 voxels in small holes; now have 30066 voxels
201112-22:43:02,264 nipype.interface INFO:
stderr 2020-11-12T22:43:02.264467: + Filled 6 voxels in large holes; now have 30072 voxels
201112-22:43:02,265 nipype.interface INFO:
stderr 2020-11-12T22:43:02.265745: + Clustering voxels ...
201112-22:43:02,266 nipype.interface INFO:
stderr 2020-11-12T22:43:02.266840: + Largest cluster has 30071 voxels
201112-22:43:02,267 nipype.interface INFO:
stderr 2020-11-12T22:43:02.267072: + Clustering non-brain voxels ...
201112-22:43:02,267 nipype.interface INFO:
stderr 2020-11-12T22:43:02.267235: + Clustering voxels ...
201112-22:43:02,270 nipype.interface INFO:
stderr 2020-11-12T22:43:02.270389: + Largest cluster has 109107 voxels
201112-22:43:02,270 nipype.interface INFO:
stderr 2020-11-12T22:43:02.270722: + Mask now has 30157 voxels
201112-22:43:02,270 nipype.interface INFO:
stderr 2020-11-12T22:43:02.270876:++ Dilating automask
201112-22:43:02,280 nipype.interface INFO:
stderr 2020-11-12T22:43:02.280024: + Clustering voxels ...
201112-22:43:02,282 nipype.interface INFO:
stderr 2020-11-12T22:43:02.282393: + Largest cluster has 103000 voxels
201112-22:43:02,282 nipype.interface INFO:
stderr 2020-11-12T22:43:02.282724:++ 36264 voxels in the mask [out of 139264: 26.04%]
201112-22:43:02,282 nipype.interface INFO:
stderr 2020-11-12T22:43:02.282893:++ first 10 x-planes are zero [from R]
201112-22:43:02,283 nipype.interface INFO:
stderr 2020-11-12T22:43:02.283052:++ last 8 x-planes are zero [from L]
201112-22:43:02,283 nipype.interface INFO:
stderr 2020-11-12T22:43:02.283195:++ first 5 y-planes are zero [from P]
201112-22:43:02,283 nipype.interface INFO:
stderr 2020-11-12T22:43:02.283344:++ last 8 y-planes are zero [from A]
201112-22:43:02,283 nipype.interface INFO:
stderr 2020-11-12T22:43:02.283488:++ first 1 z-planes are zero [from I]
201112-22:43:02,283 nipype.interface INFO:
stderr 2020-11-12T22:43:02.283625:++ last 1 z-planes are zero [from S]
201112-22:43:02,288 nipype.interface INFO:
stderr 2020-11-12T22:43:02.288251:++ Output dataset ./uni_mask.nii.gz
201112-22:43:02,288 nipype.interface INFO:
stderr 2020-11-12T22:43:02.288489:++ applying mask to original data
201112-22:43:02,289 nipype.interface INFO:
stderr 2020-11-12T22:43:02.289389:++ Writing masked data
201112-22:43:02,304 nipype.interface INFO:
stderr 2020-11-12T22:43:02.304211:++ Output dataset ./uni_masked.nii.gz
201112-22:43:02,304 nipype.interface INFO:
stderr 2020-11-12T22:43:02.304739:++ CPU time = 0.000000 sec
201112-22:43:02,453 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:43:02,455 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks".
201112-22:43:02,463 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:43:02,854 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:43:02,855 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/cal_DVARS".
201112-22:43:02,864 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-22:43:03,601 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-22:43:03,603 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_extract_brain".
201112-22:43:03,613 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_motion_correct_mcflirt/sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:43:03,852 nipype.interface INFO:
stderr 2020-11-12T22:43:03.852598:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:43:03,852 nipype.interface INFO:
stderr 2020-11-12T22:43:03.852944:++ Authored by: A cast of thousands
201112-22:43:06,886 nipype.interface INFO:
stderr 2020-11-12T22:43:06.886254:++ Output dataset ./sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:43:07,63 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:43:07,64 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize".
201112-22:43:07,74 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_extract_brain/sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize/sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-22:43:09,363 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:43:09,364 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mask_normalize".
201112-22:43:09,373 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize/sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mask_normalize/sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:43:10,453 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:43:10,455 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean".
201112-22:43:10,462 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean/sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:43:10,708 nipype.interface INFO:
stderr 2020-11-12T22:43:10.707952:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:43:10,708 nipype.interface INFO:
stderr 2020-11-12T22:43:10.708657:++ Authored by: KR Hammett & RW Cox
201112-22:43:11,42 nipype.interface INFO:
stderr 2020-11-12T22:43:11.041981:++ Output dataset ./sub-128_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-22:43:11,218 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:43:11,219 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/norm_motion_params".
201112-22:43:11,228 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:43:11,461 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:43:11,462 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_motion_0/_scan_ms_run-1/motion_plot".
201112-22:43:11,469 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-22:43:11,915 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_motion_0.motion_plot".
201112-22:43:11,916 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_qc___movement_trans_plot".
201112-22:43:11,925 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:43:12,137 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___movement_trans_plot/_scan_ms_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/movement_trans_plot/_scan_ms_run-1/motion_trans_plot.png
201112-22:43:12,154 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_trans_plot".
201112-22:43:12,155 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_qc___movement_rot_plot".
201112-22:43:12,164 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:43:12,378 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___movement_rot_plot/_scan_ms_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/movement_rot_plot/_scan_ms_run-1/motion_rot_plot.png
201112-22:43:12,396 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_rot_plot".
201112-22:43:12,398 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/calc_motion_parameters".
201112-22:43:12,407 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:43:12,641 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-22:43:12,643 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_motion_params".
201112-22:43:12,652 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:43:12,881 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_params".
201112-22:43:12,883 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/calculate_FD".
201112-22:43:12,890 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-22:43:13,122 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-22:43:13,123 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_frame_wise_displacement_power".
201112-22:43:13,132 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:43:13,361 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_power".
201112-22:43:13,362 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/calc_power_parameters".
201112-22:43:13,369 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:43:13,601 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-22:43:13,602 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_power_params".
201112-22:43:13,611 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:43:13,841 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_power_params".
201112-22:43:13,843 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_movement_parameters".
201112-22:43:13,853 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:43:14,81 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_movement_parameters".
201112-22:43:14,83 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/func_despiked_0".
201112-22:43:14,92 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-128_ses-1_task-ms_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/func_despiked_0/sub-128_ses-1_task-ms_run-1_bold_calc.nii.gz
201112-22:43:14,345 nipype.interface INFO:
stderr 2020-11-12T22:43:14.345724:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:43:14,346 nipype.interface INFO:
stderr 2020-11-12T22:43:14.346131:++ Authored by: RW Cox
201112-22:43:14,349 nipype.interface INFO:
stderr 2020-11-12T22:43:14.348975:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:43:14,349 nipype.interface INFO:
stderr 2020-11-12T22:43:14.348975: such as /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/func_despiked_0/sub-128_ses-1_task-ms_run-1_bold_calc.nii.gz,
201112-22:43:14,349 nipype.interface INFO:
stderr 2020-11-12T22:43:14.348975: or viewing/combining it with volumes of differing obliquity,
201112-22:43:14,349 nipype.interface INFO:
stderr 2020-11-12T22:43:14.348975: you should consider running:
201112-22:43:14,350 nipype.interface INFO:
stderr 2020-11-12T22:43:14.348975: 3dWarp -deoblique
201112-22:43:14,350 nipype.interface INFO:
stderr 2020-11-12T22:43:14.348975: on this and other oblique datasets in the same session.
201112-22:43:14,350 nipype.interface INFO:
stderr 2020-11-12T22:43:14.348975: See 3dWarp -help for details.
201112-22:43:14,350 nipype.interface INFO:
stderr 2020-11-12T22:43:14.350538:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/func_despiked_0/sub-128_ses-1_task-ms_run-1_bold_calc.nii.gz is 36.026867 degrees from plumb.
201112-22:43:14,350 nipype.interface INFO:
stderr 2020-11-12T22:43:14.350824:++ Input dataset is in short format, but output will be in float format
201112-22:43:14,351 nipype.interface INFO:
stderr 2020-11-12T22:43:14.351078:++ ignoring first 0 time points, using last 143
201112-22:43:14,351 nipype.interface INFO:
stderr 2020-11-12T22:43:14.351332:++ using 143 time points => -corder 5
201112-22:43:14,351 nipype.interface INFO:
stderr 2020-11-12T22:43:14.351598:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/func_despiked_0/sub-128_ses-1_task-ms_run-1_bold_calc.nii.gz
201112-22:43:14,867 nipype.interface INFO:
stderr 2020-11-12T22:43:14.867741:++ 34171 voxels in the automask [out of 139264 in dataset]
201112-22:43:14,874 nipype.interface INFO:
stderr 2020-11-12T22:43:14.874102:++ 58307 voxels in the dilated automask [out of 139264 in dataset]
201112-22:43:14,890 nipype.interface INFO:
stderr 2020-11-12T22:43:14.890842:++ Procesing time series with OLD model fit algorithm
201112-22:43:14,891 nipype.interface INFO:
stderr 2020-11-12T22:43:14.891072:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-22:43:14,891 nipype.interface INFO:
stderr 2020-11-12T22:43:14.891254: + [ 3.457% .. 0.072% of normal distribution]
201112-22:43:14,891 nipype.interface INFO:
stderr 2020-11-12T22:43:14.891890: + [ 8.839% .. 3.125% of Laplace distribution]
201112-22:43:14,892 nipype.interface INFO:
stderr 2020-11-12T22:43:14.892074:++ start OpenMP thread #0
201112-22:43:22,104 nipype.interface INFO:
stderr 2020-11-12T22:43:22.104851:.........................
201112-22:43:22,105 nipype.interface INFO:
stderr 2020-11-12T22:43:22.105343:++ Elapsed despike time = 7s 214ms
201112-22:43:22,105 nipype.interface INFO:
stderr 2020-11-12T22:43:22.105501:
201112-22:43:22,106 nipype.interface INFO:
stderr 2020-11-12T22:43:22.106409:++ FINAL: 8337901 data points, 563400 edits [6.757%], 70663 big edits [0.847%]
201112-22:43:26,424 nipype.interface INFO:
stderr 2020-11-12T22:43:26.424333:++ Output dataset ./sub-128_ses-1_task-ms_run-1_bold_calc_despike.nii.gz
201112-22:43:26,614 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_despiked_0".
201112-22:43:26,615 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_ms_run-1/slice_timing".
201112-22:43:26,626 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:43:26,627 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_ms_run-1/slice_timing/sub-128_ses-1_task-ms_run-1_bold_calc_despike.nii.gz
201112-22:43:26,840 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:43:26,877 nipype.interface INFO:
stderr 2020-11-12T22:43:26.876981:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:43:26,881 nipype.interface INFO:
stderr 2020-11-12T22:43:26.881249:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:43:26,881 nipype.interface INFO:
stderr 2020-11-12T22:43:26.881249: such as /outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_ms_run-1/slice_timing/sub-128_ses-1_task-ms_run-1_bold_calc_despike.nii.gz,
201112-22:43:26,881 nipype.interface INFO:
stderr 2020-11-12T22:43:26.881249: or viewing/combining it with volumes of differing obliquity,
201112-22:43:26,882 nipype.interface INFO:
stderr 2020-11-12T22:43:26.881249: you should consider running:
201112-22:43:26,882 nipype.interface INFO:
stderr 2020-11-12T22:43:26.881249: 3dWarp -deoblique
201112-22:43:26,882 nipype.interface INFO:
stderr 2020-11-12T22:43:26.881249: on this and other oblique datasets in the same session.
201112-22:43:26,882 nipype.interface INFO:
stderr 2020-11-12T22:43:26.881249: See 3dWarp -help for details.
201112-22:43:26,882 nipype.interface INFO:
stderr 2020-11-12T22:43:26.882667:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_ms_run-1/slice_timing/sub-128_ses-1_task-ms_run-1_bold_calc_despike.nii.gz is 36.026867 degrees from plumb.
201112-22:43:31,525 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_slice_timing_correction_0.slice_timing".
201112-22:43:31,527 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique".
201112-22:43:31,590 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift.nii.gz
201112-22:43:31,836 nipype.interface INFO:
stderr 2020-11-12T22:43:31.836557:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:43:31,836 nipype.interface INFO:
stderr 2020-11-12T22:43:31.836897:++ Authored by: RW Cox
201112-22:43:31,847 nipype.interface INFO:
stderr 2020-11-12T22:43:31.847901:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift.nii.gz
201112-22:43:31,848 nipype.interface INFO:
stderr 2020-11-12T22:43:31.848716: + deoblique
201112-22:43:31,848 nipype.interface INFO:
stderr 2020-11-12T22:43:31.848966: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-22:43:34,185 nipype.interface INFO:
stderr 2020-11-12T22:43:34.185030:++ 3drefit processed 1 datasets
201112-22:43:34,353 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:43:34,354 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_reorient".
201112-22:43:34,364 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_reorient/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift.nii.gz
201112-22:43:37,338 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:43:37,339 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_RPI".
201112-22:43:37,348 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_RPI/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-22:43:37,590 nipype.interface INFO:
stderr 2020-11-12T22:43:37.590842:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:43:37,591 nipype.interface INFO:
stderr 2020-11-12T22:43:37.591142:++ Authored by: KR Hammett & RW Cox
201112-22:43:38,239 nipype.interface INFO:
stderr 2020-11-12T22:43:38.239165:++ Output dataset ./sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-22:43:38,391 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:43:38,393 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_generate_ref".
201112-22:43:38,402 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_RPI/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_generate_ref/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-22:43:38,642 nipype.interface INFO:
stderr 2020-11-12T22:43:38.642202:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:43:38,642 nipype.interface INFO:
stderr 2020-11-12T22:43:38.642606:++ Authored by: RW Cox
201112-22:43:38,650 nipype.interface INFO:
stderr 2020-11-12T22:43:38.650070:++ Coarse del was 10, replaced with 3
201112-22:45:37,484 nipype.interface INFO:
stderr 2020-11-12T22:45:37.484776:++ Max displacement in automask = 0.54 (mm) at sub-brick 4
201112-22:45:37,485 nipype.interface INFO:
stderr 2020-11-12T22:45:37.485353:++ Max delta displ in automask = 0.48 (mm) at sub-brick 74
201112-22:45:42,664 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:45:42,666 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_motion".
201112-22:45:42,673 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_motion/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-22:45:42,920 nipype.interface INFO:
stderr 2020-11-12T22:45:42.920713:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:45:42,921 nipype.interface INFO:
stderr 2020-11-12T22:45:42.921073:++ Authored by: KR Hammett & RW Cox
201112-22:45:43,778 nipype.interface INFO:
stderr 2020-11-12T22:45:43.778315:++ Output dataset ./sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-22:45:43,962 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:45:43,963 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_motion_correct_mcflirt".
201112-22:45:43,971 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_reorient/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_motion_correct_mcflirt/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_motion/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:46:07,827 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:46:07,837 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_motion_correct".
201112-22:46:07,844 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:46:08,69 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_correct".
201112-22:46:08,71 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_mean_skull".
201112-22:46:08,78 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_mean_skull/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-22:46:08,339 nipype.interface INFO:
stderr 2020-11-12T22:46:08.339772:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:46:08,340 nipype.interface INFO:
stderr 2020-11-12T22:46:08.340081:++ Authored by: KR Hammett & RW Cox
201112-22:46:09,23 nipype.interface INFO:
stderr 2020-11-12T22:46:09.023450:++ Output dataset ./sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-22:46:09,176 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:46:09,177 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass".
201112-22:46:09,183 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_mean_skull/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:46:11,0 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:46:11,2 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_dilate".
201112-22:46:11,7 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_dilate/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:46:11,671 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:46:11,672 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_mask".
201112-22:46:11,680 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_dilate/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_mask/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:46:12,91 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:46:12,92 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/unifize".
201112-22:46:12,98 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/unifize/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:46:12,348 nipype.interface INFO:
stderr 2020-11-12T22:46:12.348667:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:47:26,331 nipype.interface INFO:
stderr 2020-11-12T22:47:26.331687: + Pre-processing: IAV..UW[s4750]Im
201112-22:47:26,346 nipype.interface INFO:
stderr 2020-11-12T22:47:26.346899:++ Output dataset ./uni.nii.gz
201112-22:47:26,347 nipype.interface INFO:
stderr 2020-11-12T22:47:26.347177:++ ===== Elapsed = 74.0 sec
201112-22:47:26,521 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:47:26,522 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass".
201112-22:47:26,528 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:47:26,779 nipype.interface INFO:
stderr 2020-11-12T22:47:26.779316:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:47:26,780 nipype.interface INFO:
stderr 2020-11-12T22:47:26.780057:++ Authored by: Emperor Zhark
201112-22:47:26,783 nipype.interface INFO:
stderr 2020-11-12T22:47:26.783187:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:47:26,788 nipype.interface INFO:
stderr 2020-11-12T22:47:26.788802:++ Forming automask
201112-22:47:26,790 nipype.interface INFO:
stderr 2020-11-12T22:47:26.790185: + Fixed clip level = 433.860809
201112-22:47:26,793 nipype.interface INFO:
stderr 2020-11-12T22:47:26.793755: + Used gradual clip level = 365.034790 .. 487.999664
201112-22:47:26,793 nipype.interface INFO:
stderr 2020-11-12T22:47:26.793962: + Number voxels above clip level = 29635
201112-22:47:26,794 nipype.interface INFO:
stderr 2020-11-12T22:47:26.794119: + Clustering voxels ...
201112-22:47:26,795 nipype.interface INFO:
stderr 2020-11-12T22:47:26.795222: + Largest cluster has 29633 voxels
201112-22:47:26,796 nipype.interface INFO:
stderr 2020-11-12T22:47:26.796595: + Clustering voxels ...
201112-22:47:26,797 nipype.interface INFO:
stderr 2020-11-12T22:47:26.797704: + Largest cluster has 29132 voxels
201112-22:47:26,801 nipype.interface INFO:
stderr 2020-11-12T22:47:26.801338: + Filled 939 voxels in small holes; now have 30071 voxels
201112-22:47:26,804 nipype.interface INFO:
stderr 2020-11-12T22:47:26.804813: + Filled 6 voxels in large holes; now have 30077 voxels
201112-22:47:26,806 nipype.interface INFO:
stderr 2020-11-12T22:47:26.806063: + Clustering voxels ...
201112-22:47:26,807 nipype.interface INFO:
stderr 2020-11-12T22:47:26.807152: + Largest cluster has 30076 voxels
201112-22:47:26,807 nipype.interface INFO:
stderr 2020-11-12T22:47:26.807393: + Clustering non-brain voxels ...
201112-22:47:26,807 nipype.interface INFO:
stderr 2020-11-12T22:47:26.807541: + Clustering voxels ...
201112-22:47:26,810 nipype.interface INFO:
stderr 2020-11-12T22:47:26.810372: + Largest cluster has 109102 voxels
201112-22:47:26,810 nipype.interface INFO:
stderr 2020-11-12T22:47:26.810703: + Mask now has 30162 voxels
201112-22:47:26,810 nipype.interface INFO:
stderr 2020-11-12T22:47:26.810853:++ Dilating automask
201112-22:47:26,819 nipype.interface INFO:
stderr 2020-11-12T22:47:26.819520: + Clustering voxels ...
201112-22:47:26,821 nipype.interface INFO:
stderr 2020-11-12T22:47:26.821896: + Largest cluster has 102989 voxels
201112-22:47:26,822 nipype.interface INFO:
stderr 2020-11-12T22:47:26.822227:++ 36275 voxels in the mask [out of 139264: 26.05%]
201112-22:47:26,822 nipype.interface INFO:
stderr 2020-11-12T22:47:26.822399:++ first 10 x-planes are zero [from R]
201112-22:47:26,822 nipype.interface INFO:
stderr 2020-11-12T22:47:26.822558:++ last 8 x-planes are zero [from L]
201112-22:47:26,822 nipype.interface INFO:
stderr 2020-11-12T22:47:26.822701:++ first 5 y-planes are zero [from P]
201112-22:47:26,822 nipype.interface INFO:
stderr 2020-11-12T22:47:26.822849:++ last 8 y-planes are zero [from A]
201112-22:47:26,822 nipype.interface INFO:
stderr 2020-11-12T22:47:26.822983:++ first 1 z-planes are zero [from I]
201112-22:47:26,823 nipype.interface INFO:
stderr 2020-11-12T22:47:26.823116:++ last 1 z-planes are zero [from S]
201112-22:47:26,827 nipype.interface INFO:
stderr 2020-11-12T22:47:26.827008:++ Output dataset ./uni_mask.nii.gz
201112-22:47:26,827 nipype.interface INFO:
stderr 2020-11-12T22:47:26.827183:++ applying mask to original data
201112-22:47:26,828 nipype.interface INFO:
stderr 2020-11-12T22:47:26.828187:++ Writing masked data
201112-22:47:26,841 nipype.interface INFO:
stderr 2020-11-12T22:47:26.841746:++ Output dataset ./uni_masked.nii.gz
201112-22:47:26,842 nipype.interface INFO:
stderr 2020-11-12T22:47:26.842054:++ CPU time = 0.000000 sec
201112-22:47:26,993 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:47:26,994 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks".
201112-22:47:27,1 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:47:27,400 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:47:27,402 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-22:47:27,407 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-22:47:27,637 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-22:47:27,639 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-22:47:27,646 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:47:27,892 nipype.interface INFO:
stderr 2020-11-12T22:47:27.892395:++ no -frac option: defaulting to -union
201112-22:47:27,892 nipype.interface INFO:
stderr 2020-11-12T22:47:27.892961:++ processing 1 input dataset(s), NN=2...
201112-22:47:27,893 nipype.interface INFO:
stderr 2020-11-12T22:47:27.893134:++ padding all datasets by 0 (for dilations)
201112-22:47:27,897 nipype.interface INFO:
stderr 2020-11-12T22:47:27.897579:++ frac 0 over 1 volumes gives min count 0
201112-22:47:27,898 nipype.interface INFO:
stderr 2020-11-12T22:47:27.897990:++ voxel limits: 0 clipped, 36194 survived, 103070 were zero
201112-22:47:27,898 nipype.interface INFO:
stderr 2020-11-12T22:47:27.898175:++ writing result sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-22:47:27,902 nipype.interface INFO:
stderr 2020-11-12T22:47:27.902483:++ Output dataset ./sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-22:47:28,53 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-22:47:28,54 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_functional_brain_mask".
201112-22:47:28,62 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:47:28,289 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask".
201112-22:47:28,291 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/functional_brain_mask_derivative_0".
201112-22:47:28,295 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-22:47:28,509 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-22:47:28,514 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:47:28,988 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201112-22:47:29,3 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.functional_brain_mask_derivative_0".
201112-22:47:29,4 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_extract_brain".
201112-22:47:29,12 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_motion_correct_mcflirt/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:47:29,260 nipype.interface INFO:
stderr 2020-11-12T22:47:29.260202:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:47:29,260 nipype.interface INFO:
stderr 2020-11-12T22:47:29.260797:++ Authored by: A cast of thousands
201112-22:47:32,648 nipype.interface INFO:
stderr 2020-11-12T22:47:32.648541:++ Output dataset ./sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:47:32,828 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:47:32,829 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize".
201112-22:47:32,836 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_extract_brain/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-22:47:35,244 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:47:35,245 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-22:47:35,250 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:47:36,174 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_mean".
201112-22:47:36,176 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-22:47:36,182 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:47:36,421 nipype.interface INFO:
stderr 2020-11-12T22:47:36.421846:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:47:36,422 nipype.interface INFO:
stderr 2020-11-12T22:47:36.422146:++ Authored by: KR Hammett & RW Cox
201112-22:47:37,36 nipype.interface INFO:
stderr 2020-11-12T22:47:37.036770:++ Output dataset ./sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:47:37,186 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.functional_mean".
201112-22:47:37,188 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_ms_run-1/std_dev".
201112-22:47:37,194 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_ms_run-1/std_dev/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:47:37,446 nipype.interface INFO:
stderr 2020-11-12T22:47:37.446451:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:47:37,447 nipype.interface INFO:
stderr 2020-11-12T22:47:37.446980:++ Authored by: KR Hammett & RW Cox
201112-22:47:38,20 nipype.interface INFO:
stderr 2020-11-12T22:47:38.020168:++ Output dataset ./sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:47:38,200 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev".
201112-22:47:38,202 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_functional_preprocessed".
201112-22:47:38,209 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:47:38,441 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed".
201112-22:47:38,443 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mask_normalize".
201112-22:47:38,448 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mask_normalize/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:47:39,561 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:47:39,563 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_functional_preprocessed_mask".
201112-22:47:39,571 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:47:39,802 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed_mask".
201112-22:47:39,804 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean".
201112-22:47:39,811 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:47:40,65 nipype.interface INFO:
stderr 2020-11-12T22:47:40.065294:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:47:40,66 nipype.interface INFO:
stderr 2020-11-12T22:47:40.066045:++ Authored by: KR Hammett & RW Cox
201112-22:47:40,661 nipype.interface INFO:
stderr 2020-11-12T22:47:40.661662:++ Output dataset ./sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-22:47:40,841 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:47:40,843 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_mean_functional".
201112-22:47:40,849 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:47:41,82 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional".
201112-22:47:41,84 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/norm_motion_params".
201112-22:47:41,90 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:47:41,325 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:47:41,326 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_slice_time_corrected".
201112-22:47:41,334 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:47:41,562 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_slice_time_corrected".
201112-22:47:41,564 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_raw_functional".
201112-22:47:41,573 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:47:41,925 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_raw_functional".
201112-22:47:41,926 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_ms_run-1/check_func_scan".
201112-22:47:41,959 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:47:42,193 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.check_func_scan".
201112-22:47:42,204 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_matching_run-3/select_scan_params".
201112-22:47:42,233 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:47:42,464 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.select_scan_params".
201112-22:47:42,474 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_matching_run-3/s3_scan_params".
201112-22:47:42,482 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:47:42,711 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.s3_scan_params".
201112-22:47:42,714 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.scan_params_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/scan_params_0".
201112-22:47:42,723 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:47:42,950 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.scan_params_0".
201112-22:47:42,952 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_matching_run-3/selectrest".
201112-22:47:42,981 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:47:43,213 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.selectrest".
201112-22:47:43,223 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_matching_run-3/check_for_s3".
201112-22:47:43,228 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:47:43,535 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.check_for_s3".
201112-22:47:43,536 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-128_ses-1/edit_func_0/_scan_matching_run-3/func_get_idx".
201112-22:47:43,542 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:47:43,771 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.edit_func_0.func_get_idx".
201112-22:47:43,773 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-128_ses-1/edit_func_0/_scan_matching_run-3/func_drop_trs".
201112-22:47:43,779 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-128/ses-1/func/sub-128_ses-1_task-matching_run-3_bold.nii.gz[0..98] -expr "a" -prefix sub-128_ses-1_task-matching_run-3_bold_calc.nii.gz
201112-22:47:44,26 nipype.interface INFO:
stderr 2020-11-12T22:47:44.025954:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:47:44,26 nipype.interface INFO:
stderr 2020-11-12T22:47:44.026304:++ Authored by: A cast of thousands
201112-22:47:48,361 nipype.interface INFO:
stderr 2020-11-12T22:47:48.361837:++ Output dataset ./sub-128_ses-1_task-matching_run-3_bold_calc.nii.gz
201112-22:47:48,541 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.edit_func_0.func_drop_trs".
201112-22:47:48,543 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique".
201112-22:47:48,578 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-128_ses-1_task-matching_run-3_bold_calc.nii.gz
201112-22:47:48,823 nipype.interface INFO:
stderr 2020-11-12T22:47:48.823196:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:47:48,823 nipype.interface INFO:
stderr 2020-11-12T22:47:48.823527:++ Authored by: RW Cox
201112-22:47:48,834 nipype.interface INFO:
stderr 2020-11-12T22:47:48.834014:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-128_ses-1_task-matching_run-3_bold_calc.nii.gz
201112-22:47:48,834 nipype.interface INFO:
stderr 2020-11-12T22:47:48.834871: + deoblique
201112-22:47:48,835 nipype.interface INFO:
stderr 2020-11-12T22:47:48.835134: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-128_ses-1_task-matching_run-3_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-128_ses-1_task-matching_run-3_bold_calc.nii.gz in NIFTI storage)
201112-22:47:51,717 nipype.interface INFO:
stderr 2020-11-12T22:47:51.717038:++ 3drefit processed 1 datasets
201112-22:47:51,899 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:47:51,900 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_reorient".
201112-22:47:51,907 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-1_task-matching_run-3_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_reorient/sub-128_ses-1_task-matching_run-3_bold_calc.nii.gz
201112-22:47:55,362 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:47:55,364 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_RPI".
201112-22:47:55,370 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-3_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_RPI/sub-128_ses-1_task-matching_run-3_bold_calc_resample.nii.gz
201112-22:47:55,610 nipype.interface INFO:
stderr 2020-11-12T22:47:55.610678:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:47:55,610 nipype.interface INFO:
stderr 2020-11-12T22:47:55.610974:++ Authored by: KR Hammett & RW Cox
201112-22:47:55,967 nipype.interface INFO:
stderr 2020-11-12T22:47:55.967727:++ Output dataset ./sub-128_ses-1_task-matching_run-3_bold_calc_resample_tstat.nii.gz
201112-22:47:56,118 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:47:56,119 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_generate_ref".
201112-22:47:56,127 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-1_task-matching_run-3_bold_calc_resample.1D -1Dmatrix_save sub-128_ses-1_task-matching_run-3_bold_calc_resample.aff12.1D -prefix sub-128_ses-1_task-matching_run-3_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_RPI/sub-128_ses-1_task-matching_run-3_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-1_task-matching_run-3_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_generate_ref/sub-128_ses-1_task-matching_run-3_bold_calc_resample.nii.gz
201112-22:47:56,370 nipype.interface INFO:
stderr 2020-11-12T22:47:56.370528:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:47:56,370 nipype.interface INFO:
stderr 2020-11-12T22:47:56.370829:++ Authored by: RW Cox
201112-22:47:56,381 nipype.interface INFO:
stderr 2020-11-12T22:47:56.381632:++ Coarse del was 10, replaced with 3
201112-22:49:19,200 nipype.interface INFO:
stderr 2020-11-12T22:49:19.200608:++ Max displacement in automask = 1.12 (mm) at sub-brick 63
201112-22:49:19,201 nipype.interface INFO:
stderr 2020-11-12T22:49:19.201220:++ Max delta displ in automask = 0.84 (mm) at sub-brick 73
201112-22:49:22,50 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:49:22,51 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_motion".
201112-22:49:22,58 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-3_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_motion/sub-128_ses-1_task-matching_run-3_bold_calc_resample_volreg.nii.gz
201112-22:49:22,307 nipype.interface INFO:
stderr 2020-11-12T22:49:22.307305:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:49:22,308 nipype.interface INFO:
stderr 2020-11-12T22:49:22.308101:++ Authored by: KR Hammett & RW Cox
201112-22:49:22,673 nipype.interface INFO:
stderr 2020-11-12T22:49:22.672983:++ Output dataset ./sub-128_ses-1_task-matching_run-3_bold_calc_resample_volreg_tstat.nii.gz
201112-22:49:22,825 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:49:22,826 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_motion_correct_mcflirt".
201112-22:49:22,832 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_reorient/sub-128_ses-1_task-matching_run-3_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_motion_correct_mcflirt/sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_motion/sub-128_ses-1_task-matching_run-3_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:49:41,45 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:49:41,52 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/calculate_FDJ".
201112-22:49:41,57 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:49:41,289 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:49:41,290 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_frame_wise_displacement_jenkinson".
201112-22:49:41,298 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:49:41,529 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_jenkinson".
201112-22:49:41,531 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_max_displacement".
201112-22:49:41,539 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:49:41,771 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_max_displacement".
201112-22:49:41,772 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_coordinate_transformation".
201112-22:49:41,789 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:49:42,49 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_coordinate_transformation".
201112-22:49:42,58 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_mean_skull".
201112-22:49:42,64 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_mean_skull/sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf.nii.gz
201112-22:49:42,319 nipype.interface INFO:
stderr 2020-11-12T22:49:42.319194:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:49:42,319 nipype.interface INFO:
stderr 2020-11-12T22:49:42.319919:++ Authored by: KR Hammett & RW Cox
201112-22:49:42,714 nipype.interface INFO:
stderr 2020-11-12T22:49:42.714254:++ Output dataset ./sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat.nii.gz
201112-22:49:42,866 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:49:42,868 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass".
201112-22:49:42,874 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_mean_skull/sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:49:44,685 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:49:44,687 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_dilate".
201112-22:49:44,693 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_dilate/sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:49:45,365 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:49:45,367 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_mask".
201112-22:49:45,373 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_dilate/sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_mask/sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:49:45,779 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:49:45,780 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/unifize".
201112-22:49:45,787 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/unifize/sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:49:46,30 nipype.interface INFO:
stderr 2020-11-12T22:49:46.030236:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:50:59,800 nipype.interface INFO:
stderr 2020-11-12T22:50:59.800050: + Pre-processing: IAV..UW[s4992]Im
201112-22:50:59,817 nipype.interface INFO:
stderr 2020-11-12T22:50:59.816963:++ Output dataset ./uni.nii.gz
201112-22:50:59,817 nipype.interface INFO:
stderr 2020-11-12T22:50:59.817360:++ ===== Elapsed = 73.8 sec
201112-22:50:59,991 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:50:59,993 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass".
201112-22:50:59,999 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:51:00,252 nipype.interface INFO:
stderr 2020-11-12T22:51:00.252619:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:51:00,252 nipype.interface INFO:
stderr 2020-11-12T22:51:00.252974:++ Authored by: Emperor Zhark
201112-22:51:00,256 nipype.interface INFO:
stderr 2020-11-12T22:51:00.255969:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:51:00,261 nipype.interface INFO:
stderr 2020-11-12T22:51:00.261167:++ Forming automask
201112-22:51:00,262 nipype.interface INFO:
stderr 2020-11-12T22:51:00.262911: + Fixed clip level = 442.321777
201112-22:51:00,267 nipype.interface INFO:
stderr 2020-11-12T22:51:00.267883: + Used gradual clip level = 370.961761 .. 495.118408
201112-22:51:00,268 nipype.interface INFO:
stderr 2020-11-12T22:51:00.268163: + Number voxels above clip level = 29725
201112-22:51:00,268 nipype.interface INFO:
stderr 2020-11-12T22:51:00.268325: + Clustering voxels ...
201112-22:51:00,269 nipype.interface INFO:
stderr 2020-11-12T22:51:00.269446: + Largest cluster has 29722 voxels
201112-22:51:00,270 nipype.interface INFO:
stderr 2020-11-12T22:51:00.270831: + Clustering voxels ...
201112-22:51:00,271 nipype.interface INFO:
stderr 2020-11-12T22:51:00.271932: + Largest cluster has 29276 voxels
201112-22:51:00,275 nipype.interface INFO:
stderr 2020-11-12T22:51:00.275420: + Filled 809 voxels in small holes; now have 30085 voxels
201112-22:51:00,278 nipype.interface INFO:
stderr 2020-11-12T22:51:00.278656: + Filled 7 voxels in large holes; now have 30092 voxels
201112-22:51:00,279 nipype.interface INFO:
stderr 2020-11-12T22:51:00.279901: + Clustering voxels ...
201112-22:51:00,281 nipype.interface INFO:
stderr 2020-11-12T22:51:00.281005: + Largest cluster has 30090 voxels
201112-22:51:00,281 nipype.interface INFO:
stderr 2020-11-12T22:51:00.281235: + Clustering non-brain voxels ...
201112-22:51:00,281 nipype.interface INFO:
stderr 2020-11-12T22:51:00.281387: + Clustering voxels ...
201112-22:51:00,284 nipype.interface INFO:
stderr 2020-11-12T22:51:00.284239: + Largest cluster has 109120 voxels
201112-22:51:00,284 nipype.interface INFO:
stderr 2020-11-12T22:51:00.284576: + Mask now has 30144 voxels
201112-22:51:00,284 nipype.interface INFO:
stderr 2020-11-12T22:51:00.284733:++ Dilating automask
201112-22:51:00,295 nipype.interface INFO:
stderr 2020-11-12T22:51:00.295446: + Clustering voxels ...
201112-22:51:00,297 nipype.interface INFO:
stderr 2020-11-12T22:51:00.297838: + Largest cluster has 102960 voxels
201112-22:51:00,298 nipype.interface INFO:
stderr 2020-11-12T22:51:00.298174:++ 36304 voxels in the mask [out of 139264: 26.07%]
201112-22:51:00,298 nipype.interface INFO:
stderr 2020-11-12T22:51:00.298344:++ first 10 x-planes are zero [from R]
201112-22:51:00,298 nipype.interface INFO:
stderr 2020-11-12T22:51:00.298513:++ last 8 x-planes are zero [from L]
201112-22:51:00,298 nipype.interface INFO:
stderr 2020-11-12T22:51:00.298659:++ first 5 y-planes are zero [from P]
201112-22:51:00,298 nipype.interface INFO:
stderr 2020-11-12T22:51:00.298808:++ last 8 y-planes are zero [from A]
201112-22:51:00,298 nipype.interface INFO:
stderr 2020-11-12T22:51:00.298944:++ first 0 z-planes are zero [from I]
201112-22:51:00,299 nipype.interface INFO:
stderr 2020-11-12T22:51:00.299083:++ last 1 z-planes are zero [from S]
201112-22:51:00,302 nipype.interface INFO:
stderr 2020-11-12T22:51:00.302960:++ Output dataset ./uni_mask.nii.gz
201112-22:51:00,303 nipype.interface INFO:
stderr 2020-11-12T22:51:00.303133:++ applying mask to original data
201112-22:51:00,303 nipype.interface INFO:
stderr 2020-11-12T22:51:00.303808:++ Writing masked data
201112-22:51:00,317 nipype.interface INFO:
stderr 2020-11-12T22:51:00.317107:++ Output dataset ./uni_masked.nii.gz
201112-22:51:00,317 nipype.interface INFO:
stderr 2020-11-12T22:51:00.317643:++ CPU time = 0.000000 sec
201112-22:51:00,467 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:51:00,469 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks".
201112-22:51:00,475 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:51:00,875 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:51:00,877 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/cal_DVARS".
201112-22:51:00,883 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-22:51:01,460 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-22:51:01,461 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_extract_brain".
201112-22:51:01,468 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_motion_correct_mcflirt/sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc.nii.gz
201112-22:51:01,710 nipype.interface INFO:
stderr 2020-11-12T22:51:01.710481:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:51:01,710 nipype.interface INFO:
stderr 2020-11-12T22:51:01.710788:++ Authored by: A cast of thousands
201112-22:51:03,805 nipype.interface INFO:
stderr 2020-11-12T22:51:03.805603:++ Output dataset ./sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc.nii.gz
201112-22:51:03,980 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:51:03,982 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize".
201112-22:51:03,987 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_extract_brain/sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize/sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-22:51:05,700 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:51:05,702 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mask_normalize".
201112-22:51:05,707 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize/sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mask_normalize/sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:51:06,562 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:51:06,564 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean".
201112-22:51:06,569 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean/sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc.nii.gz
201112-22:51:06,818 nipype.interface INFO:
stderr 2020-11-12T22:51:06.818372:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:51:06,819 nipype.interface INFO:
stderr 2020-11-12T22:51:06.819148:++ Authored by: KR Hammett & RW Cox
201112-22:51:07,59 nipype.interface INFO:
stderr 2020-11-12T22:51:07.059569:++ Output dataset ./sub-128_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-22:51:07,209 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:51:07,211 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/norm_motion_params".
201112-22:51:07,216 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:51:07,448 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:51:07,449 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_motion_0/_scan_matching_run-3/motion_plot".
201112-22:51:07,454 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-22:51:07,883 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_motion_0.motion_plot".
201112-22:51:07,884 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_qc___movement_trans_plot".
201112-22:51:07,890 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:51:08,100 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___movement_trans_plot/_scan_matching_run-3/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/movement_trans_plot/_scan_matching_run-3/motion_trans_plot.png
201112-22:51:08,118 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_trans_plot".
201112-22:51:08,120 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_qc___movement_rot_plot".
201112-22:51:08,127 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:51:08,340 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___movement_rot_plot/_scan_matching_run-3/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/movement_rot_plot/_scan_matching_run-3/motion_rot_plot.png
201112-22:51:08,357 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_rot_plot".
201112-22:51:08,359 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/calc_motion_parameters".
201112-22:51:08,366 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:51:08,598 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-22:51:08,600 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_motion_params".
201112-22:51:08,607 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:51:08,839 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_params".
201112-22:51:08,841 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/calculate_FD".
201112-22:51:08,845 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-22:51:09,79 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-22:51:09,81 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_frame_wise_displacement_power".
201112-22:51:09,88 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:51:09,321 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_power".
201112-22:51:09,323 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/calc_power_parameters".
201112-22:51:09,329 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:51:09,564 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-22:51:09,565 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_power_params".
201112-22:51:09,572 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:51:09,805 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_power_params".
201112-22:51:09,806 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_movement_parameters".
201112-22:51:09,814 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:51:10,43 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_movement_parameters".
201112-22:51:10,45 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/func_despiked_0".
201112-22:51:10,51 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-128_ses-1_task-matching_run-3_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/func_despiked_0/sub-128_ses-1_task-matching_run-3_bold_calc.nii.gz
201112-22:51:10,299 nipype.interface INFO:
stderr 2020-11-12T22:51:10.299140:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:51:10,299 nipype.interface INFO:
stderr 2020-11-12T22:51:10.299508:++ Authored by: RW Cox
201112-22:51:10,301 nipype.interface INFO:
stderr 2020-11-12T22:51:10.301693:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:51:10,301 nipype.interface INFO:
stderr 2020-11-12T22:51:10.301693: such as /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/func_despiked_0/sub-128_ses-1_task-matching_run-3_bold_calc.nii.gz,
201112-22:51:10,302 nipype.interface INFO:
stderr 2020-11-12T22:51:10.301693: or viewing/combining it with volumes of differing obliquity,
201112-22:51:10,302 nipype.interface INFO:
stderr 2020-11-12T22:51:10.301693: you should consider running:
201112-22:51:10,302 nipype.interface INFO:
stderr 2020-11-12T22:51:10.301693: 3dWarp -deoblique
201112-22:51:10,302 nipype.interface INFO:
stderr 2020-11-12T22:51:10.301693: on this and other oblique datasets in the same session.
201112-22:51:10,302 nipype.interface INFO:
stderr 2020-11-12T22:51:10.301693: See 3dWarp -help for details.
201112-22:51:10,302 nipype.interface INFO:
stderr 2020-11-12T22:51:10.302593:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/func_despiked_0/sub-128_ses-1_task-matching_run-3_bold_calc.nii.gz is 36.026867 degrees from plumb.
201112-22:51:10,302 nipype.interface INFO:
stderr 2020-11-12T22:51:10.302780:++ Input dataset is in short format, but output will be in float format
201112-22:51:10,302 nipype.interface INFO:
stderr 2020-11-12T22:51:10.302950:++ ignoring first 0 time points, using last 99
201112-22:51:10,303 nipype.interface INFO:
stderr 2020-11-12T22:51:10.303122:++ using 99 time points => -corder 3
201112-22:51:10,303 nipype.interface INFO:
stderr 2020-11-12T22:51:10.303287:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/func_despiked_0/sub-128_ses-1_task-matching_run-3_bold_calc.nii.gz
201112-22:51:10,657 nipype.interface INFO:
stderr 2020-11-12T22:51:10.657581:++ 34177 voxels in the automask [out of 139264 in dataset]
201112-22:51:10,663 nipype.interface INFO:
stderr 2020-11-12T22:51:10.663083:++ 58581 voxels in the dilated automask [out of 139264 in dataset]
201112-22:51:10,671 nipype.interface INFO:
stderr 2020-11-12T22:51:10.671413:++ Procesing time series with OLD model fit algorithm
201112-22:51:10,671 nipype.interface INFO:
stderr 2020-11-12T22:51:10.671600:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-22:51:10,671 nipype.interface INFO:
stderr 2020-11-12T22:51:10.671762: + [ 3.457% .. 0.072% of normal distribution]
201112-22:51:10,671 nipype.interface INFO:
stderr 2020-11-12T22:51:10.671914: + [ 8.839% .. 3.125% of Laplace distribution]
201112-22:51:10,672 nipype.interface INFO:
stderr 2020-11-12T22:51:10.672073:++ start OpenMP thread #0
201112-22:51:14,203 nipype.interface INFO:
stderr 2020-11-12T22:51:14.203496:.........................
201112-22:51:14,204 nipype.interface INFO:
stderr 2020-11-12T22:51:14.203986:++ Elapsed despike time = 3s 531ms
201112-22:51:14,204 nipype.interface INFO:
stderr 2020-11-12T22:51:14.204137:
201112-22:51:14,204 nipype.interface INFO:
stderr 2020-11-12T22:51:14.204844:++ FINAL: 5799519 data points, 474791 edits [8.187%], 105232 big edits [1.814%]
201112-22:51:17,208 nipype.interface INFO:
stderr 2020-11-12T22:51:17.208426:++ Output dataset ./sub-128_ses-1_task-matching_run-3_bold_calc_despike.nii.gz
201112-22:51:17,402 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_despiked_0".
201112-22:51:17,404 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_matching_run-3/slice_timing".
201112-22:51:17,412 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:51:17,413 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_matching_run-3/slice_timing/sub-128_ses-1_task-matching_run-3_bold_calc_despike.nii.gz
201112-22:51:17,622 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:51:17,662 nipype.interface INFO:
stderr 2020-11-12T22:51:17.662925:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:51:17,666 nipype.interface INFO:
stderr 2020-11-12T22:51:17.666466:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:51:17,666 nipype.interface INFO:
stderr 2020-11-12T22:51:17.666466: such as /outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_matching_run-3/slice_timing/sub-128_ses-1_task-matching_run-3_bold_calc_despike.nii.gz,
201112-22:51:17,666 nipype.interface INFO:
stderr 2020-11-12T22:51:17.666466: or viewing/combining it with volumes of differing obliquity,
201112-22:51:17,667 nipype.interface INFO:
stderr 2020-11-12T22:51:17.666466: you should consider running:
201112-22:51:17,667 nipype.interface INFO:
stderr 2020-11-12T22:51:17.666466: 3dWarp -deoblique
201112-22:51:17,667 nipype.interface INFO:
stderr 2020-11-12T22:51:17.666466: on this and other oblique datasets in the same session.
201112-22:51:17,667 nipype.interface INFO:
stderr 2020-11-12T22:51:17.666466: See 3dWarp -help for details.
201112-22:51:17,668 nipype.interface INFO:
stderr 2020-11-12T22:51:17.668010:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_matching_run-3/slice_timing/sub-128_ses-1_task-matching_run-3_bold_calc_despike.nii.gz is 36.026867 degrees from plumb.
201112-22:51:21,337 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_slice_timing_correction_0.slice_timing".
201112-22:51:21,339 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique".
201112-22:51:21,381 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift.nii.gz
201112-22:51:21,625 nipype.interface INFO:
stderr 2020-11-12T22:51:21.625519:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:51:21,625 nipype.interface INFO:
stderr 2020-11-12T22:51:21.625853:++ Authored by: RW Cox
201112-22:51:21,638 nipype.interface INFO:
stderr 2020-11-12T22:51:21.638433:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift.nii.gz
201112-22:51:21,639 nipype.interface INFO:
stderr 2020-11-12T22:51:21.639065: + deoblique
201112-22:51:21,639 nipype.interface INFO:
stderr 2020-11-12T22:51:21.639264: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-22:51:23,293 nipype.interface INFO:
stderr 2020-11-12T22:51:23.292949:++ 3drefit processed 1 datasets
201112-22:51:23,470 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:51:23,471 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_reorient".
201112-22:51:23,478 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_reorient/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift.nii.gz
201112-22:51:25,711 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:51:25,712 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_RPI".
201112-22:51:25,718 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_RPI/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample.nii.gz
201112-22:51:25,966 nipype.interface INFO:
stderr 2020-11-12T22:51:25.966073:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:51:25,966 nipype.interface INFO:
stderr 2020-11-12T22:51:25.966375:++ Authored by: KR Hammett & RW Cox
201112-22:51:26,432 nipype.interface INFO:
stderr 2020-11-12T22:51:26.432478:++ Output dataset ./sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-22:51:26,584 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:51:26,585 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_generate_ref".
201112-22:51:26,591 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_RPI/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_generate_ref/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample.nii.gz
201112-22:51:26,831 nipype.interface INFO:
stderr 2020-11-12T22:51:26.831120:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:51:26,831 nipype.interface INFO:
stderr 2020-11-12T22:51:26.831439:++ Authored by: RW Cox
201112-22:51:26,838 nipype.interface INFO:
stderr 2020-11-12T22:51:26.838517:++ Coarse del was 10, replaced with 3
201112-22:52:48,26 nipype.interface INFO:
stderr 2020-11-12T22:52:48.026269:++ Max displacement in automask = 1.04 (mm) at sub-brick 97
201112-22:52:48,26 nipype.interface INFO:
stderr 2020-11-12T22:52:48.026840:++ Max delta displ in automask = 0.68 (mm) at sub-brick 73
201112-22:52:51,634 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:52:51,635 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_motion".
201112-22:52:51,641 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_motion/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-22:52:51,890 nipype.interface INFO:
stderr 2020-11-12T22:52:51.890136:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:52:51,890 nipype.interface INFO:
stderr 2020-11-12T22:52:51.890672:++ Authored by: KR Hammett & RW Cox
201112-22:52:52,502 nipype.interface INFO:
stderr 2020-11-12T22:52:52.502220:++ Output dataset ./sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-22:52:52,655 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:52:52,656 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_motion_correct_mcflirt".
201112-22:52:52,662 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_reorient/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_motion_correct_mcflirt/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_motion/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:53:09,194 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:53:09,201 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_motion_correct".
201112-22:53:09,209 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:53:09,436 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_correct".
201112-22:53:09,438 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_mean_skull".
201112-22:53:09,445 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_mean_skull/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-22:53:09,689 nipype.interface INFO:
stderr 2020-11-12T22:53:09.689942:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:53:09,690 nipype.interface INFO:
stderr 2020-11-12T22:53:09.690260:++ Authored by: KR Hammett & RW Cox
201112-22:53:10,182 nipype.interface INFO:
stderr 2020-11-12T22:53:10.182533:++ Output dataset ./sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-22:53:10,335 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:53:10,336 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass".
201112-22:53:10,342 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_mean_skull/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:53:12,153 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:53:12,154 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_dilate".
201112-22:53:12,159 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_dilate/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:53:12,818 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:53:12,820 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_mask".
201112-22:53:12,825 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_dilate/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_mask/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:53:13,241 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:53:13,243 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/unifize".
201112-22:53:13,252 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/unifize/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:53:13,491 nipype.interface INFO:
stderr 2020-11-12T22:53:13.491705:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:54:27,189 nipype.interface INFO:
stderr 2020-11-12T22:54:27.189525: + Pre-processing: IAV..UW[s4979]Im
201112-22:54:27,204 nipype.interface INFO:
stderr 2020-11-12T22:54:27.204364:++ Output dataset ./uni.nii.gz
201112-22:54:27,204 nipype.interface INFO:
stderr 2020-11-12T22:54:27.204655:++ ===== Elapsed = 73.7 sec
201112-22:54:27,380 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:54:27,382 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass".
201112-22:54:27,388 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:54:27,639 nipype.interface INFO:
stderr 2020-11-12T22:54:27.639529:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:54:27,639 nipype.interface INFO:
stderr 2020-11-12T22:54:27.639830:++ Authored by: Emperor Zhark
201112-22:54:27,641 nipype.interface INFO:
stderr 2020-11-12T22:54:27.641950:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:54:27,648 nipype.interface INFO:
stderr 2020-11-12T22:54:27.648135:++ Forming automask
201112-22:54:27,649 nipype.interface INFO:
stderr 2020-11-12T22:54:27.649713: + Fixed clip level = 441.859222
201112-22:54:27,653 nipype.interface INFO:
stderr 2020-11-12T22:54:27.653034: + Used gradual clip level = 370.320129 .. 494.796204
201112-22:54:27,653 nipype.interface INFO:
stderr 2020-11-12T22:54:27.653242: + Number voxels above clip level = 29716
201112-22:54:27,653 nipype.interface INFO:
stderr 2020-11-12T22:54:27.653408: + Clustering voxels ...
201112-22:54:27,654 nipype.interface INFO:
stderr 2020-11-12T22:54:27.654556: + Largest cluster has 29714 voxels
201112-22:54:27,655 nipype.interface INFO:
stderr 2020-11-12T22:54:27.655916: + Clustering voxels ...
201112-22:54:27,657 nipype.interface INFO:
stderr 2020-11-12T22:54:27.657027: + Largest cluster has 29263 voxels
201112-22:54:27,660 nipype.interface INFO:
stderr 2020-11-12T22:54:27.660429: + Filled 824 voxels in small holes; now have 30087 voxels
201112-22:54:27,663 nipype.interface INFO:
stderr 2020-11-12T22:54:27.663668: + Filled 7 voxels in large holes; now have 30094 voxels
201112-22:54:27,664 nipype.interface INFO:
stderr 2020-11-12T22:54:27.664916: + Clustering voxels ...
201112-22:54:27,666 nipype.interface INFO:
stderr 2020-11-12T22:54:27.666008: + Largest cluster has 30092 voxels
201112-22:54:27,666 nipype.interface INFO:
stderr 2020-11-12T22:54:27.666241: + Clustering non-brain voxels ...
201112-22:54:27,666 nipype.interface INFO:
stderr 2020-11-12T22:54:27.666394: + Clustering voxels ...
201112-22:54:27,669 nipype.interface INFO:
stderr 2020-11-12T22:54:27.669289: + Largest cluster has 109118 voxels
201112-22:54:27,669 nipype.interface INFO:
stderr 2020-11-12T22:54:27.669627: + Mask now has 30146 voxels
201112-22:54:27,669 nipype.interface INFO:
stderr 2020-11-12T22:54:27.669781:++ Dilating automask
201112-22:54:27,679 nipype.interface INFO:
stderr 2020-11-12T22:54:27.679353: + Clustering voxels ...
201112-22:54:27,681 nipype.interface INFO:
stderr 2020-11-12T22:54:27.681746: + Largest cluster has 102979 voxels
201112-22:54:27,682 nipype.interface INFO:
stderr 2020-11-12T22:54:27.682076:++ 36285 voxels in the mask [out of 139264: 26.05%]
201112-22:54:27,682 nipype.interface INFO:
stderr 2020-11-12T22:54:27.682244:++ first 10 x-planes are zero [from R]
201112-22:54:27,682 nipype.interface INFO:
stderr 2020-11-12T22:54:27.682410:++ last 8 x-planes are zero [from L]
201112-22:54:27,682 nipype.interface INFO:
stderr 2020-11-12T22:54:27.682555:++ first 5 y-planes are zero [from P]
201112-22:54:27,682 nipype.interface INFO:
stderr 2020-11-12T22:54:27.682703:++ last 8 y-planes are zero [from A]
201112-22:54:27,682 nipype.interface INFO:
stderr 2020-11-12T22:54:27.682834:++ first 0 z-planes are zero [from I]
201112-22:54:27,682 nipype.interface INFO:
stderr 2020-11-12T22:54:27.682968:++ last 1 z-planes are zero [from S]
201112-22:54:27,686 nipype.interface INFO:
stderr 2020-11-12T22:54:27.686795:++ Output dataset ./uni_mask.nii.gz
201112-22:54:27,686 nipype.interface INFO:
stderr 2020-11-12T22:54:27.686973:++ applying mask to original data
201112-22:54:27,687 nipype.interface INFO:
stderr 2020-11-12T22:54:27.687930:++ Writing masked data
201112-22:54:27,701 nipype.interface INFO:
stderr 2020-11-12T22:54:27.701753:++ Output dataset ./uni_masked.nii.gz
201112-22:54:27,702 nipype.interface INFO:
stderr 2020-11-12T22:54:27.702062:++ CPU time = 0.000000 sec
201112-22:54:27,852 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:54:27,854 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks".
201112-22:54:27,860 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:54:28,254 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:54:28,255 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-22:54:28,260 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-22:54:28,490 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-22:54:28,491 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-22:54:28,498 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:54:28,746 nipype.interface INFO:
stderr 2020-11-12T22:54:28.746461:++ no -frac option: defaulting to -union
201112-22:54:28,746 nipype.interface INFO:
stderr 2020-11-12T22:54:28.746815:++ processing 1 input dataset(s), NN=2...
201112-22:54:28,747 nipype.interface INFO:
stderr 2020-11-12T22:54:28.747008:++ padding all datasets by 0 (for dilations)
201112-22:54:28,751 nipype.interface INFO:
stderr 2020-11-12T22:54:28.751866:++ frac 0 over 1 volumes gives min count 0
201112-22:54:28,752 nipype.interface INFO:
stderr 2020-11-12T22:54:28.752297:++ voxel limits: 0 clipped, 36206 survived, 103058 were zero
201112-22:54:28,752 nipype.interface INFO:
stderr 2020-11-12T22:54:28.752511:++ writing result sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-22:54:28,756 nipype.interface INFO:
stderr 2020-11-12T22:54:28.756845:++ Output dataset ./sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-22:54:28,913 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-22:54:28,915 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_functional_brain_mask".
201112-22:54:28,921 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:54:29,148 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask".
201112-22:54:29,151 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/functional_brain_mask_derivative_0".
201112-22:54:29,155 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-22:54:29,365 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-22:54:29,371 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:54:29,857 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201112-22:54:29,874 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.functional_brain_mask_derivative_0".
201112-22:54:29,875 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_extract_brain".
201112-22:54:29,881 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_motion_correct_mcflirt/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:54:30,122 nipype.interface INFO:
stderr 2020-11-12T22:54:30.122879:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:54:30,123 nipype.interface INFO:
stderr 2020-11-12T22:54:30.123193:++ Authored by: A cast of thousands
201112-22:54:32,489 nipype.interface INFO:
stderr 2020-11-12T22:54:32.489023:++ Output dataset ./sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:54:32,666 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:54:32,667 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize".
201112-22:54:32,674 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_extract_brain/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-22:54:34,463 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:54:34,464 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-22:54:34,470 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:54:35,232 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_mean".
201112-22:54:35,233 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-22:54:35,238 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:54:35,480 nipype.interface INFO:
stderr 2020-11-12T22:54:35.480860:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:54:35,481 nipype.interface INFO:
stderr 2020-11-12T22:54:35.481155:++ Authored by: KR Hammett & RW Cox
201112-22:54:35,918 nipype.interface INFO:
stderr 2020-11-12T22:54:35.918608:++ Output dataset ./sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:54:36,72 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.functional_mean".
201112-22:54:36,73 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-3/std_dev".
201112-22:54:36,81 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-3/std_dev/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:54:36,321 nipype.interface INFO:
stderr 2020-11-12T22:54:36.321705:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:54:36,322 nipype.interface INFO:
stderr 2020-11-12T22:54:36.322003:++ Authored by: KR Hammett & RW Cox
201112-22:54:36,723 nipype.interface INFO:
stderr 2020-11-12T22:54:36.723766:++ Output dataset ./sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:54:36,875 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev".
201112-22:54:36,876 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_functional_preprocessed".
201112-22:54:36,883 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:54:37,111 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed".
201112-22:54:37,113 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mask_normalize".
201112-22:54:37,117 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mask_normalize/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:54:37,987 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:54:37,988 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_functional_preprocessed_mask".
201112-22:54:37,996 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:54:38,227 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed_mask".
201112-22:54:38,229 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean".
201112-22:54:38,235 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:54:38,479 nipype.interface INFO:
stderr 2020-11-12T22:54:38.479542:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:54:38,479 nipype.interface INFO:
stderr 2020-11-12T22:54:38.479858:++ Authored by: KR Hammett & RW Cox
201112-22:54:38,899 nipype.interface INFO:
stderr 2020-11-12T22:54:38.899039:++ Output dataset ./sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-22:54:39,54 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:54:39,55 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_mean_functional".
201112-22:54:39,62 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:54:39,289 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional".
201112-22:54:39,290 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/norm_motion_params".
201112-22:54:39,295 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:54:39,528 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:54:39,530 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_slice_time_corrected".
201112-22:54:39,536 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:54:39,767 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_slice_time_corrected".
201112-22:54:39,769 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_raw_functional".
201112-22:54:39,776 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:54:40,91 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_raw_functional".
201112-22:54:40,93 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_matching_run-3/check_func_scan".
201112-22:54:40,124 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:54:40,356 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.check_func_scan".
201112-22:54:40,368 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_matching_run-2/select_scan_params".
201112-22:54:40,397 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:54:40,635 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.select_scan_params".
201112-22:54:40,646 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_matching_run-2/s3_scan_params".
201112-22:54:40,654 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:54:40,883 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.s3_scan_params".
201112-22:54:40,887 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.scan_params_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/scan_params_0".
201112-22:54:40,896 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:54:41,128 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.scan_params_0".
201112-22:54:41,131 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_matching_run-2/selectrest".
201112-22:54:41,162 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:54:41,397 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.selectrest".
201112-22:54:41,408 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_matching_run-2/check_for_s3".
201112-22:54:41,412 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:54:41,712 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.check_for_s3".
201112-22:54:41,713 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-128_ses-1/edit_func_0/_scan_matching_run-2/func_get_idx".
201112-22:54:41,719 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:54:41,951 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.edit_func_0.func_get_idx".
201112-22:54:41,952 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-128_ses-1/edit_func_0/_scan_matching_run-2/func_drop_trs".
201112-22:54:41,958 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-128/ses-1/func/sub-128_ses-1_task-matching_run-2_bold.nii.gz[0..98] -expr "a" -prefix sub-128_ses-1_task-matching_run-2_bold_calc.nii.gz
201112-22:54:42,208 nipype.interface INFO:
stderr 2020-11-12T22:54:42.208412:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:54:42,209 nipype.interface INFO:
stderr 2020-11-12T22:54:42.209025:++ Authored by: A cast of thousands
201112-22:54:46,540 nipype.interface INFO:
stderr 2020-11-12T22:54:46.540768:++ Output dataset ./sub-128_ses-1_task-matching_run-2_bold_calc.nii.gz
201112-22:54:46,721 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.edit_func_0.func_drop_trs".
201112-22:54:46,723 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique".
201112-22:54:46,760 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-128_ses-1_task-matching_run-2_bold_calc.nii.gz
201112-22:54:47,5 nipype.interface INFO:
stderr 2020-11-12T22:54:47.005016:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:54:47,5 nipype.interface INFO:
stderr 2020-11-12T22:54:47.005341:++ Authored by: RW Cox
201112-22:54:47,7 nipype.interface INFO:
stderr 2020-11-12T22:54:47.007922:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-128_ses-1_task-matching_run-2_bold_calc.nii.gz
201112-22:54:47,8 nipype.interface INFO:
stderr 2020-11-12T22:54:47.008533: + deoblique
201112-22:54:47,8 nipype.interface INFO:
stderr 2020-11-12T22:54:47.008721: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-128_ses-1_task-matching_run-2_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-128_ses-1_task-matching_run-2_bold_calc.nii.gz in NIFTI storage)
201112-22:54:49,864 nipype.interface INFO:
stderr 2020-11-12T22:54:49.864256:++ 3drefit processed 1 datasets
201112-22:54:50,46 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:54:50,47 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_reorient".
201112-22:54:50,54 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-1_task-matching_run-2_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_reorient/sub-128_ses-1_task-matching_run-2_bold_calc.nii.gz
201112-22:54:53,513 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:54:53,514 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_RPI".
201112-22:54:53,521 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-2_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_RPI/sub-128_ses-1_task-matching_run-2_bold_calc_resample.nii.gz
201112-22:54:53,761 nipype.interface INFO:
stderr 2020-11-12T22:54:53.761025:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:54:53,761 nipype.interface INFO:
stderr 2020-11-12T22:54:53.761321:++ Authored by: KR Hammett & RW Cox
201112-22:54:54,118 nipype.interface INFO:
stderr 2020-11-12T22:54:54.118470:++ Output dataset ./sub-128_ses-1_task-matching_run-2_bold_calc_resample_tstat.nii.gz
201112-22:54:54,272 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:54:54,273 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_generate_ref".
201112-22:54:54,279 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-1_task-matching_run-2_bold_calc_resample.1D -1Dmatrix_save sub-128_ses-1_task-matching_run-2_bold_calc_resample.aff12.1D -prefix sub-128_ses-1_task-matching_run-2_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_RPI/sub-128_ses-1_task-matching_run-2_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-1_task-matching_run-2_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_generate_ref/sub-128_ses-1_task-matching_run-2_bold_calc_resample.nii.gz
201112-22:54:54,521 nipype.interface INFO:
stderr 2020-11-12T22:54:54.521703:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:54:54,522 nipype.interface INFO:
stderr 2020-11-12T22:54:54.522003:++ Authored by: RW Cox
201112-22:54:54,533 nipype.interface INFO:
stderr 2020-11-12T22:54:54.533284:++ Coarse del was 10, replaced with 3
201112-22:56:17,253 nipype.interface INFO:
stderr 2020-11-12T22:56:17.253529:++ Max displacement in automask = 1.47 (mm) at sub-brick 67
201112-22:56:17,254 nipype.interface INFO:
stderr 2020-11-12T22:56:17.254091:++ Max delta displ in automask = 1.42 (mm) at sub-brick 36
201112-22:56:20,116 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:56:20,119 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_motion".
201112-22:56:20,125 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-2_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_motion/sub-128_ses-1_task-matching_run-2_bold_calc_resample_volreg.nii.gz
201112-22:56:20,380 nipype.interface INFO:
stderr 2020-11-12T22:56:20.380755:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:56:20,381 nipype.interface INFO:
stderr 2020-11-12T22:56:20.381250:++ Authored by: KR Hammett & RW Cox
201112-22:56:20,748 nipype.interface INFO:
stderr 2020-11-12T22:56:20.748152:++ Output dataset ./sub-128_ses-1_task-matching_run-2_bold_calc_resample_volreg_tstat.nii.gz
201112-22:56:20,900 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:56:20,902 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_motion_correct_mcflirt".
201112-22:56:20,909 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_reorient/sub-128_ses-1_task-matching_run-2_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_motion_correct_mcflirt/sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_motion/sub-128_ses-1_task-matching_run-2_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:56:39,36 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:56:39,43 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/calculate_FDJ".
201112-22:56:39,49 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:56:39,276 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:56:39,278 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_frame_wise_displacement_jenkinson".
201112-22:56:39,285 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:56:39,519 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_jenkinson".
201112-22:56:39,521 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_max_displacement".
201112-22:56:39,530 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:56:39,764 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_max_displacement".
201112-22:56:39,765 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_coordinate_transformation".
201112-22:56:39,783 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:56:40,39 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_coordinate_transformation".
201112-22:56:40,48 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_mean_skull".
201112-22:56:40,54 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_mean_skull/sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf.nii.gz
201112-22:56:40,310 nipype.interface INFO:
stderr 2020-11-12T22:56:40.310623:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:56:40,311 nipype.interface INFO:
stderr 2020-11-12T22:56:40.311086:++ Authored by: KR Hammett & RW Cox
201112-22:56:40,704 nipype.interface INFO:
stderr 2020-11-12T22:56:40.704446:++ Output dataset ./sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat.nii.gz
201112-22:56:40,857 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:56:40,859 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass".
201112-22:56:40,865 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_mean_skull/sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:56:42,686 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:56:42,687 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_dilate".
201112-22:56:42,693 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_dilate/sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:56:43,352 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:56:43,354 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_mask".
201112-22:56:43,359 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_dilate/sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_mask/sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:56:43,773 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:56:43,774 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/unifize".
201112-22:56:43,780 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/unifize/sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:56:44,23 nipype.interface INFO:
stderr 2020-11-12T22:56:44.023592:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:57:57,822 nipype.interface INFO:
stderr 2020-11-12T22:57:57.822513: + Pre-processing: IAV..UW[s4942]Im
201112-22:57:57,838 nipype.interface INFO:
stderr 2020-11-12T22:57:57.838662:++ Output dataset ./uni.nii.gz
201112-22:57:57,838 nipype.interface INFO:
stderr 2020-11-12T22:57:57.838917:++ ===== Elapsed = 73.8 sec
201112-22:57:58,23 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:57:58,24 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass".
201112-22:57:58,30 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:57:58,284 nipype.interface INFO:
stderr 2020-11-12T22:57:58.284665:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:57:58,285 nipype.interface INFO:
stderr 2020-11-12T22:57:58.285053:++ Authored by: Emperor Zhark
201112-22:57:58,287 nipype.interface INFO:
stderr 2020-11-12T22:57:58.287121:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:57:58,292 nipype.interface INFO:
stderr 2020-11-12T22:57:58.292181:++ Forming automask
201112-22:57:58,294 nipype.interface INFO:
stderr 2020-11-12T22:57:58.294271: + Fixed clip level = 440.174835
201112-22:57:58,298 nipype.interface INFO:
stderr 2020-11-12T22:57:58.298923: + Used gradual clip level = 365.916962 .. 493.565704
201112-22:57:58,299 nipype.interface INFO:
stderr 2020-11-12T22:57:58.299128: + Number voxels above clip level = 29656
201112-22:57:58,299 nipype.interface INFO:
stderr 2020-11-12T22:57:58.299280: + Clustering voxels ...
201112-22:57:58,300 nipype.interface INFO:
stderr 2020-11-12T22:57:58.300398: + Largest cluster has 29653 voxels
201112-22:57:58,301 nipype.interface INFO:
stderr 2020-11-12T22:57:58.301753: + Clustering voxels ...
201112-22:57:58,302 nipype.interface INFO:
stderr 2020-11-12T22:57:58.302849: + Largest cluster has 29211 voxels
201112-22:57:58,306 nipype.interface INFO:
stderr 2020-11-12T22:57:58.306215: + Filled 886 voxels in small holes; now have 30097 voxels
201112-22:57:58,309 nipype.interface INFO:
stderr 2020-11-12T22:57:58.309447: + Filled 3 voxels in large holes; now have 30100 voxels
201112-22:57:58,310 nipype.interface INFO:
stderr 2020-11-12T22:57:58.310689: + Clustering voxels ...
201112-22:57:58,311 nipype.interface INFO:
stderr 2020-11-12T22:57:58.311771: + Largest cluster has 30098 voxels
201112-22:57:58,312 nipype.interface INFO:
stderr 2020-11-12T22:57:58.311998: + Clustering non-brain voxels ...
201112-22:57:58,312 nipype.interface INFO:
stderr 2020-11-12T22:57:58.312142: + Clustering voxels ...
201112-22:57:58,315 nipype.interface INFO:
stderr 2020-11-12T22:57:58.315098: + Largest cluster has 109108 voxels
201112-22:57:58,315 nipype.interface INFO:
stderr 2020-11-12T22:57:58.315430: + Mask now has 30156 voxels
201112-22:57:58,315 nipype.interface INFO:
stderr 2020-11-12T22:57:58.315581:++ Dilating automask
201112-22:57:58,323 nipype.interface INFO:
stderr 2020-11-12T22:57:58.323059: + Clustering voxels ...
201112-22:57:58,325 nipype.interface INFO:
stderr 2020-11-12T22:57:58.325454: + Largest cluster has 102951 voxels
201112-22:57:58,325 nipype.interface INFO:
stderr 2020-11-12T22:57:58.325787:++ 36313 voxels in the mask [out of 139264: 26.07%]
201112-22:57:58,325 nipype.interface INFO:
stderr 2020-11-12T22:57:58.325955:++ first 10 x-planes are zero [from R]
201112-22:57:58,326 nipype.interface INFO:
stderr 2020-11-12T22:57:58.326112:++ last 8 x-planes are zero [from L]
201112-22:57:58,326 nipype.interface INFO:
stderr 2020-11-12T22:57:58.326254:++ first 5 y-planes are zero [from P]
201112-22:57:58,326 nipype.interface INFO:
stderr 2020-11-12T22:57:58.326412:++ last 8 y-planes are zero [from A]
201112-22:57:58,326 nipype.interface INFO:
stderr 2020-11-12T22:57:58.326547:++ first 0 z-planes are zero [from I]
201112-22:57:58,326 nipype.interface INFO:
stderr 2020-11-12T22:57:58.326681:++ last 1 z-planes are zero [from S]
201112-22:57:58,330 nipype.interface INFO:
stderr 2020-11-12T22:57:58.330652:++ Output dataset ./uni_mask.nii.gz
201112-22:57:58,330 nipype.interface INFO:
stderr 2020-11-12T22:57:58.330823:++ applying mask to original data
201112-22:57:58,331 nipype.interface INFO:
stderr 2020-11-12T22:57:58.331507:++ Writing masked data
201112-22:57:58,344 nipype.interface INFO:
stderr 2020-11-12T22:57:58.344729:++ Output dataset ./uni_masked.nii.gz
201112-22:57:58,345 nipype.interface INFO:
stderr 2020-11-12T22:57:58.345115:++ CPU time = 0.000000 sec
201112-22:57:58,502 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:57:58,503 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks".
201112-22:57:58,510 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:57:58,912 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:57:58,913 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/cal_DVARS".
201112-22:57:58,918 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-22:57:59,500 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-22:57:59,502 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_extract_brain".
201112-22:57:59,509 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_motion_correct_mcflirt/sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc.nii.gz
201112-22:57:59,751 nipype.interface INFO:
stderr 2020-11-12T22:57:59.751174:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:57:59,751 nipype.interface INFO:
stderr 2020-11-12T22:57:59.751489:++ Authored by: A cast of thousands
201112-22:58:01,867 nipype.interface INFO:
stderr 2020-11-12T22:58:01.867932:++ Output dataset ./sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc.nii.gz
201112-22:58:02,45 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:58:02,47 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize".
201112-22:58:02,52 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_extract_brain/sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize/sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-22:58:03,754 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:58:03,755 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mask_normalize".
201112-22:58:03,761 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize/sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mask_normalize/sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:58:04,623 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:58:04,625 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean".
201112-22:58:04,630 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean/sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc.nii.gz
201112-22:58:04,880 nipype.interface INFO:
stderr 2020-11-12T22:58:04.880698:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:58:04,881 nipype.interface INFO:
stderr 2020-11-12T22:58:04.881224:++ Authored by: KR Hammett & RW Cox
201112-22:58:05,118 nipype.interface INFO:
stderr 2020-11-12T22:58:05.118592:++ Output dataset ./sub-128_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-22:58:05,274 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:58:05,275 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/norm_motion_params".
201112-22:58:05,281 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:58:05,512 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:58:05,513 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_motion_0/_scan_matching_run-2/motion_plot".
201112-22:58:05,516 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-22:58:05,959 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_motion_0.motion_plot".
201112-22:58:05,961 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_qc___movement_trans_plot".
201112-22:58:05,967 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:58:06,180 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___movement_trans_plot/_scan_matching_run-2/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/movement_trans_plot/_scan_matching_run-2/motion_trans_plot.png
201112-22:58:06,197 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_trans_plot".
201112-22:58:06,199 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_qc___movement_rot_plot".
201112-22:58:06,205 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:58:06,419 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___movement_rot_plot/_scan_matching_run-2/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/movement_rot_plot/_scan_matching_run-2/motion_rot_plot.png
201112-22:58:06,437 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_rot_plot".
201112-22:58:06,439 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/calc_motion_parameters".
201112-22:58:06,447 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:58:06,682 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-22:58:06,683 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_motion_params".
201112-22:58:06,691 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:58:06,921 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_params".
201112-22:58:06,922 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/calculate_FD".
201112-22:58:06,926 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-22:58:07,159 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-22:58:07,161 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_frame_wise_displacement_power".
201112-22:58:07,168 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:58:07,401 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_power".
201112-22:58:07,403 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/calc_power_parameters".
201112-22:58:07,408 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:58:07,642 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-22:58:07,643 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_power_params".
201112-22:58:07,650 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:58:07,882 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_power_params".
201112-22:58:07,884 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_movement_parameters".
201112-22:58:07,892 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:58:08,122 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_movement_parameters".
201112-22:58:08,124 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/func_despiked_0".
201112-22:58:08,129 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-128_ses-1_task-matching_run-2_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/func_despiked_0/sub-128_ses-1_task-matching_run-2_bold_calc.nii.gz
201112-22:58:08,386 nipype.interface INFO:
stderr 2020-11-12T22:58:08.386167:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:58:08,386 nipype.interface INFO:
stderr 2020-11-12T22:58:08.386793:++ Authored by: RW Cox
201112-22:58:08,389 nipype.interface INFO:
stderr 2020-11-12T22:58:08.389297:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:58:08,389 nipype.interface INFO:
stderr 2020-11-12T22:58:08.389297: such as /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/func_despiked_0/sub-128_ses-1_task-matching_run-2_bold_calc.nii.gz,
201112-22:58:08,389 nipype.interface INFO:
stderr 2020-11-12T22:58:08.389297: or viewing/combining it with volumes of differing obliquity,
201112-22:58:08,389 nipype.interface INFO:
stderr 2020-11-12T22:58:08.389297: you should consider running:
201112-22:58:08,389 nipype.interface INFO:
stderr 2020-11-12T22:58:08.389297: 3dWarp -deoblique
201112-22:58:08,389 nipype.interface INFO:
stderr 2020-11-12T22:58:08.389297: on this and other oblique datasets in the same session.
201112-22:58:08,390 nipype.interface INFO:
stderr 2020-11-12T22:58:08.389297: See 3dWarp -help for details.
201112-22:58:08,390 nipype.interface INFO:
stderr 2020-11-12T22:58:08.390161:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/func_despiked_0/sub-128_ses-1_task-matching_run-2_bold_calc.nii.gz is 36.026867 degrees from plumb.
201112-22:58:08,390 nipype.interface INFO:
stderr 2020-11-12T22:58:08.390353:++ Input dataset is in short format, but output will be in float format
201112-22:58:08,390 nipype.interface INFO:
stderr 2020-11-12T22:58:08.390540:++ ignoring first 0 time points, using last 99
201112-22:58:08,390 nipype.interface INFO:
stderr 2020-11-12T22:58:08.390715:++ using 99 time points => -corder 3
201112-22:58:08,390 nipype.interface INFO:
stderr 2020-11-12T22:58:08.390883:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/func_despiked_0/sub-128_ses-1_task-matching_run-2_bold_calc.nii.gz
201112-22:58:08,748 nipype.interface INFO:
stderr 2020-11-12T22:58:08.748033:++ 34243 voxels in the automask [out of 139264 in dataset]
201112-22:58:08,753 nipype.interface INFO:
stderr 2020-11-12T22:58:08.753544:++ 58584 voxels in the dilated automask [out of 139264 in dataset]
201112-22:58:08,761 nipype.interface INFO:
stderr 2020-11-12T22:58:08.761908:++ Procesing time series with OLD model fit algorithm
201112-22:58:08,762 nipype.interface INFO:
stderr 2020-11-12T22:58:08.762090:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-22:58:08,762 nipype.interface INFO:
stderr 2020-11-12T22:58:08.762249: + [ 3.457% .. 0.072% of normal distribution]
201112-22:58:08,762 nipype.interface INFO:
stderr 2020-11-12T22:58:08.762408: + [ 8.839% .. 3.125% of Laplace distribution]
201112-22:58:08,762 nipype.interface INFO:
stderr 2020-11-12T22:58:08.762567:++ start OpenMP thread #0
201112-22:58:12,193 nipype.interface INFO:
stderr 2020-11-12T22:58:12.193281:..........................
201112-22:58:12,194 nipype.interface INFO:
stderr 2020-11-12T22:58:12.194075:++ Elapsed despike time = 3s 431ms
201112-22:58:12,194 nipype.interface INFO:
stderr 2020-11-12T22:58:12.194228:
201112-22:58:12,194 nipype.interface INFO:
stderr 2020-11-12T22:58:12.194931:++ FINAL: 5799816 data points, 467778 edits [8.065%], 101157 big edits [1.744%]
201112-22:58:15,196 nipype.interface INFO:
stderr 2020-11-12T22:58:15.196671:++ Output dataset ./sub-128_ses-1_task-matching_run-2_bold_calc_despike.nii.gz
201112-22:58:15,393 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_despiked_0".
201112-22:58:15,395 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_matching_run-2/slice_timing".
201112-22:58:15,404 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:58:15,404 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_matching_run-2/slice_timing/sub-128_ses-1_task-matching_run-2_bold_calc_despike.nii.gz
201112-22:58:15,618 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:58:15,657 nipype.interface INFO:
stderr 2020-11-12T22:58:15.657019:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:58:15,660 nipype.interface INFO:
stderr 2020-11-12T22:58:15.660784:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:58:15,661 nipype.interface INFO:
stderr 2020-11-12T22:58:15.660784: such as /outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_matching_run-2/slice_timing/sub-128_ses-1_task-matching_run-2_bold_calc_despike.nii.gz,
201112-22:58:15,661 nipype.interface INFO:
stderr 2020-11-12T22:58:15.660784: or viewing/combining it with volumes of differing obliquity,
201112-22:58:15,661 nipype.interface INFO:
stderr 2020-11-12T22:58:15.660784: you should consider running:
201112-22:58:15,661 nipype.interface INFO:
stderr 2020-11-12T22:58:15.660784: 3dWarp -deoblique
201112-22:58:15,661 nipype.interface INFO:
stderr 2020-11-12T22:58:15.660784: on this and other oblique datasets in the same session.
201112-22:58:15,661 nipype.interface INFO:
stderr 2020-11-12T22:58:15.660784: See 3dWarp -help for details.
201112-22:58:15,662 nipype.interface INFO:
stderr 2020-11-12T22:58:15.662006:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_matching_run-2/slice_timing/sub-128_ses-1_task-matching_run-2_bold_calc_despike.nii.gz is 36.026867 degrees from plumb.
201112-22:58:19,313 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_slice_timing_correction_0.slice_timing".
201112-22:58:19,314 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique".
201112-22:58:19,364 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift.nii.gz
201112-22:58:19,611 nipype.interface INFO:
stderr 2020-11-12T22:58:19.611811:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:58:19,612 nipype.interface INFO:
stderr 2020-11-12T22:58:19.612136:++ Authored by: RW Cox
201112-22:58:19,614 nipype.interface INFO:
stderr 2020-11-12T22:58:19.614459:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift.nii.gz
201112-22:58:19,615 nipype.interface INFO:
stderr 2020-11-12T22:58:19.615086: + deoblique
201112-22:58:19,615 nipype.interface INFO:
stderr 2020-11-12T22:58:19.615275: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-22:58:21,247 nipype.interface INFO:
stderr 2020-11-12T22:58:21.247616:++ 3drefit processed 1 datasets
201112-22:58:21,431 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:58:21,432 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_reorient".
201112-22:58:21,438 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_reorient/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift.nii.gz
201112-22:58:23,657 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:58:23,659 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_RPI".
201112-22:58:23,667 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_RPI/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample.nii.gz
201112-22:58:23,911 nipype.interface INFO:
stderr 2020-11-12T22:58:23.911646:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:58:23,911 nipype.interface INFO:
stderr 2020-11-12T22:58:23.911950:++ Authored by: KR Hammett & RW Cox
201112-22:58:24,373 nipype.interface INFO:
stderr 2020-11-12T22:58:24.373640:++ Output dataset ./sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-22:58:24,529 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:58:24,531 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_generate_ref".
201112-22:58:24,537 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_RPI/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_generate_ref/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample.nii.gz
201112-22:58:24,780 nipype.interface INFO:
stderr 2020-11-12T22:58:24.780180:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:58:24,780 nipype.interface INFO:
stderr 2020-11-12T22:58:24.780494:++ Authored by: RW Cox
201112-22:58:24,787 nipype.interface INFO:
stderr 2020-11-12T22:58:24.787649:++ Coarse del was 10, replaced with 3
201112-22:59:46,154 nipype.interface INFO:
stderr 2020-11-12T22:59:46.154192:++ Max displacement in automask = 1.19 (mm) at sub-brick 67
201112-22:59:46,154 nipype.interface INFO:
stderr 2020-11-12T22:59:46.154763:++ Max delta displ in automask = 1.14 (mm) at sub-brick 66
201112-22:59:49,939 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:59:49,941 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_motion".
201112-22:59:49,948 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_motion/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-22:59:50,247 nipype.interface INFO:
stderr 2020-11-12T22:59:50.247207:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:59:50,247 nipype.interface INFO:
stderr 2020-11-12T22:59:50.247869:++ Authored by: KR Hammett & RW Cox
201112-22:59:50,860 nipype.interface INFO:
stderr 2020-11-12T22:59:50.859978:++ Output dataset ./sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-22:59:51,13 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:59:51,15 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_motion_correct_mcflirt".
201112-22:59:51,22 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_reorient/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_motion_correct_mcflirt/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_motion/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-23:00:07,606 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-23:00:07,614 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_motion_correct".
201112-23:00:07,622 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:00:07,848 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_correct".
201112-23:00:07,850 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_mean_skull".
201112-23:00:07,856 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_mean_skull/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-23:00:08,110 nipype.interface INFO:
stderr 2020-11-12T23:00:08.110570:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:00:08,111 nipype.interface INFO:
stderr 2020-11-12T23:00:08.111113:++ Authored by: KR Hammett & RW Cox
201112-23:00:08,601 nipype.interface INFO:
stderr 2020-11-12T23:00:08.601871:++ Output dataset ./sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-23:00:08,753 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-23:00:08,754 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass".
201112-23:00:08,760 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_mean_skull/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-23:00:10,580 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-23:00:10,581 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_dilate".
201112-23:00:10,587 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_dilate/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-23:00:11,253 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-23:00:11,254 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_mask".
201112-23:00:11,260 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_dilate/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_mask/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-23:00:11,674 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-23:00:11,675 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/unifize".
201112-23:00:11,681 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/unifize/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-23:00:11,922 nipype.interface INFO:
stderr 2020-11-12T23:00:11.922757:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:01:25,808 nipype.interface INFO:
stderr 2020-11-12T23:01:25.808766: + Pre-processing: IAV..UW[s4941]Im
201112-23:01:25,823 nipype.interface INFO:
stderr 2020-11-12T23:01:25.823112:++ Output dataset ./uni.nii.gz
201112-23:01:25,823 nipype.interface INFO:
stderr 2020-11-12T23:01:25.823402:++ ===== Elapsed = 73.9 sec
201112-23:01:26,4 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-23:01:26,5 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass".
201112-23:01:26,11 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass/uni.nii.gz
201112-23:01:26,265 nipype.interface INFO:
stderr 2020-11-12T23:01:26.265251:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:01:26,265 nipype.interface INFO:
stderr 2020-11-12T23:01:26.265845:++ Authored by: Emperor Zhark
201112-23:01:26,268 nipype.interface INFO:
stderr 2020-11-12T23:01:26.268711:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass/uni.nii.gz
201112-23:01:26,273 nipype.interface INFO:
stderr 2020-11-12T23:01:26.273636:++ Forming automask
201112-23:01:26,275 nipype.interface INFO:
stderr 2020-11-12T23:01:26.275570: + Fixed clip level = 439.636871
201112-23:01:26,279 nipype.interface INFO:
stderr 2020-11-12T23:01:26.279970: + Used gradual clip level = 365.489136 .. 492.885284
201112-23:01:26,280 nipype.interface INFO:
stderr 2020-11-12T23:01:26.280195: + Number voxels above clip level = 29639
201112-23:01:26,280 nipype.interface INFO:
stderr 2020-11-12T23:01:26.280363: + Clustering voxels ...
201112-23:01:26,281 nipype.interface INFO:
stderr 2020-11-12T23:01:26.281517: + Largest cluster has 29635 voxels
201112-23:01:26,282 nipype.interface INFO:
stderr 2020-11-12T23:01:26.282916: + Clustering voxels ...
201112-23:01:26,284 nipype.interface INFO:
stderr 2020-11-12T23:01:26.284032: + Largest cluster has 29189 voxels
201112-23:01:26,287 nipype.interface INFO:
stderr 2020-11-12T23:01:26.287707: + Filled 895 voxels in small holes; now have 30084 voxels
201112-23:01:26,292 nipype.interface INFO:
stderr 2020-11-12T23:01:26.292000: + Filled 4 voxels in large holes; now have 30088 voxels
201112-23:01:26,293 nipype.interface INFO:
stderr 2020-11-12T23:01:26.293263: + Clustering voxels ...
201112-23:01:26,294 nipype.interface INFO:
stderr 2020-11-12T23:01:26.294366: + Largest cluster has 30086 voxels
201112-23:01:26,294 nipype.interface INFO:
stderr 2020-11-12T23:01:26.294611: + Clustering non-brain voxels ...
201112-23:01:26,294 nipype.interface INFO:
stderr 2020-11-12T23:01:26.294765: + Clustering voxels ...
201112-23:01:26,297 nipype.interface INFO:
stderr 2020-11-12T23:01:26.297694: + Largest cluster has 109120 voxels
201112-23:01:26,298 nipype.interface INFO:
stderr 2020-11-12T23:01:26.298036: + Mask now has 30144 voxels
201112-23:01:26,298 nipype.interface INFO:
stderr 2020-11-12T23:01:26.298199:++ Dilating automask
201112-23:01:26,305 nipype.interface INFO:
stderr 2020-11-12T23:01:26.305144: + Clustering voxels ...
201112-23:01:26,307 nipype.interface INFO:
stderr 2020-11-12T23:01:26.307558: + Largest cluster has 102958 voxels
201112-23:01:26,307 nipype.interface INFO:
stderr 2020-11-12T23:01:26.307900:++ 36306 voxels in the mask [out of 139264: 26.07%]
201112-23:01:26,308 nipype.interface INFO:
stderr 2020-11-12T23:01:26.308078:++ first 10 x-planes are zero [from R]
201112-23:01:26,308 nipype.interface INFO:
stderr 2020-11-12T23:01:26.308245:++ last 8 x-planes are zero [from L]
201112-23:01:26,308 nipype.interface INFO:
stderr 2020-11-12T23:01:26.308403:++ first 5 y-planes are zero [from P]
201112-23:01:26,308 nipype.interface INFO:
stderr 2020-11-12T23:01:26.308564:++ last 8 y-planes are zero [from A]
201112-23:01:26,308 nipype.interface INFO:
stderr 2020-11-12T23:01:26.308708:++ first 1 z-planes are zero [from I]
201112-23:01:26,308 nipype.interface INFO:
stderr 2020-11-12T23:01:26.308850:++ last 1 z-planes are zero [from S]
201112-23:01:26,312 nipype.interface INFO:
stderr 2020-11-12T23:01:26.312697:++ Output dataset ./uni_mask.nii.gz
201112-23:01:26,312 nipype.interface INFO:
stderr 2020-11-12T23:01:26.312876:++ applying mask to original data
201112-23:01:26,313 nipype.interface INFO:
stderr 2020-11-12T23:01:26.313573:++ Writing masked data
201112-23:01:26,328 nipype.interface INFO:
stderr 2020-11-12T23:01:26.328342:++ Output dataset ./uni_masked.nii.gz
201112-23:01:26,328 nipype.interface INFO:
stderr 2020-11-12T23:01:26.328844:++ CPU time = 0.000000 sec
201112-23:01:26,481 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-23:01:26,483 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks".
201112-23:01:26,489 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-23:01:26,892 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-23:01:26,893 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-23:01:26,898 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-23:01:27,128 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-23:01:27,130 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-23:01:27,136 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-23:01:27,381 nipype.interface INFO:
stderr 2020-11-12T23:01:27.381501:++ no -frac option: defaulting to -union
201112-23:01:27,381 nipype.interface INFO:
stderr 2020-11-12T23:01:27.381819:++ processing 1 input dataset(s), NN=2...
201112-23:01:27,382 nipype.interface INFO:
stderr 2020-11-12T23:01:27.381985:++ padding all datasets by 0 (for dilations)
201112-23:01:27,386 nipype.interface INFO:
stderr 2020-11-12T23:01:27.386677:++ frac 0 over 1 volumes gives min count 0
201112-23:01:27,387 nipype.interface INFO:
stderr 2020-11-12T23:01:27.387094:++ voxel limits: 0 clipped, 36240 survived, 103024 were zero
201112-23:01:27,387 nipype.interface INFO:
stderr 2020-11-12T23:01:27.387273:++ writing result sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-23:01:27,391 nipype.interface INFO:
stderr 2020-11-12T23:01:27.391574:++ Output dataset ./sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-23:01:27,543 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-23:01:27,544 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_functional_brain_mask".
201112-23:01:27,550 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:01:27,777 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask".
201112-23:01:27,779 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/functional_brain_mask_derivative_0".
201112-23:01:27,783 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-23:01:27,992 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-23:01:27,998 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-23:01:28,479 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201112-23:01:28,494 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.functional_brain_mask_derivative_0".
201112-23:01:28,496 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_extract_brain".
201112-23:01:28,503 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_motion_correct_mcflirt/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-23:01:28,743 nipype.interface INFO:
stderr 2020-11-12T23:01:28.743043:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:01:28,743 nipype.interface INFO:
stderr 2020-11-12T23:01:28.743349:++ Authored by: A cast of thousands
201112-23:01:31,100 nipype.interface INFO:
stderr 2020-11-12T23:01:31.099970:++ Output dataset ./sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-23:01:31,276 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-23:01:31,278 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize".
201112-23:01:31,283 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_extract_brain/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-23:01:33,75 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-23:01:33,76 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-23:01:33,82 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-23:01:33,850 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_mean".
201112-23:01:33,852 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-23:01:33,856 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-23:01:34,100 nipype.interface INFO:
stderr 2020-11-12T23:01:34.100228:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:01:34,100 nipype.interface INFO:
stderr 2020-11-12T23:01:34.100580:++ Authored by: KR Hammett & RW Cox
201112-23:01:34,541 nipype.interface INFO:
stderr 2020-11-12T23:01:34.541197:++ Output dataset ./sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-23:01:34,697 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.functional_mean".
201112-23:01:34,699 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-2/std_dev".
201112-23:01:34,705 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-2/std_dev/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-23:01:34,960 nipype.interface INFO:
stderr 2020-11-12T23:01:34.960069:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:01:34,960 nipype.interface INFO:
stderr 2020-11-12T23:01:34.960375:++ Authored by: KR Hammett & RW Cox
201112-23:01:35,364 nipype.interface INFO:
stderr 2020-11-12T23:01:35.364249:++ Output dataset ./sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-23:01:35,526 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev".
201112-23:01:35,527 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_functional_preprocessed".
201112-23:01:35,534 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:01:35,760 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed".
201112-23:01:35,761 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mask_normalize".
201112-23:01:35,767 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mask_normalize/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-23:01:36,634 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-23:01:36,635 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_functional_preprocessed_mask".
201112-23:01:36,642 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:01:36,869 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed_mask".
201112-23:01:36,871 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean".
201112-23:01:36,876 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-23:01:37,120 nipype.interface INFO:
stderr 2020-11-12T23:01:37.120391:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:01:37,121 nipype.interface INFO:
stderr 2020-11-12T23:01:37.121014:++ Authored by: KR Hammett & RW Cox
201112-23:01:37,544 nipype.interface INFO:
stderr 2020-11-12T23:01:37.544126:++ Output dataset ./sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-23:01:37,701 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-23:01:37,702 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_mean_functional".
201112-23:01:37,710 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:01:37,939 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional".
201112-23:01:37,941 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/norm_motion_params".
201112-23:01:37,946 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-23:01:38,179 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-23:01:38,180 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_slice_time_corrected".
201112-23:01:38,188 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:01:38,419 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_slice_time_corrected".
201112-23:01:38,420 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_raw_functional".
201112-23:01:38,431 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:01:38,746 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_raw_functional".
201112-23:01:38,748 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_matching_run-2/check_func_scan".
201112-23:01:38,783 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-23:01:39,15 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.check_func_scan".
201112-23:01:39,25 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_matching_run-1/select_scan_params".
201112-23:01:39,55 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-23:01:39,293 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.select_scan_params".
201112-23:01:39,304 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_matching_run-1/s3_scan_params".
201112-23:01:39,313 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-23:01:39,545 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.s3_scan_params".
201112-23:01:39,547 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.scan_params_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/scan_params_0".
201112-23:01:39,557 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-23:01:39,790 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.scan_params_0".
201112-23:01:39,792 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_matching_run-1/selectrest".
201112-23:01:39,825 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-23:01:40,61 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.selectrest".
201112-23:01:40,72 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_matching_run-1/check_for_s3".
201112-23:01:40,77 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-23:01:40,386 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.check_for_s3".
201112-23:01:40,388 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-128_ses-1/edit_func_0/_scan_matching_run-1/func_get_idx".
201112-23:01:40,399 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-23:01:40,638 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.edit_func_0.func_get_idx".
201112-23:01:40,639 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-128_ses-1/edit_func_0/_scan_matching_run-1/func_drop_trs".
201112-23:01:40,647 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-128/ses-1/func/sub-128_ses-1_task-matching_run-1_bold.nii.gz[0..98] -expr "a" -prefix sub-128_ses-1_task-matching_run-1_bold_calc.nii.gz
201112-23:01:40,902 nipype.interface INFO:
stderr 2020-11-12T23:01:40.902246:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:01:40,902 nipype.interface INFO:
stderr 2020-11-12T23:01:40.902893:++ Authored by: A cast of thousands
201112-23:01:45,296 nipype.interface INFO:
stderr 2020-11-12T23:01:45.296562:++ Output dataset ./sub-128_ses-1_task-matching_run-1_bold_calc.nii.gz
201112-23:01:45,481 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.edit_func_0.func_drop_trs".
201112-23:01:45,483 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique".
201112-23:01:45,524 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-128_ses-1_task-matching_run-1_bold_calc.nii.gz
201112-23:01:45,772 nipype.interface INFO:
stderr 2020-11-12T23:01:45.772861:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:01:45,773 nipype.interface INFO:
stderr 2020-11-12T23:01:45.773201:++ Authored by: RW Cox
201112-23:01:45,783 nipype.interface INFO:
stderr 2020-11-12T23:01:45.783813:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-128_ses-1_task-matching_run-1_bold_calc.nii.gz
201112-23:01:45,784 nipype.interface INFO:
stderr 2020-11-12T23:01:45.784739: + deoblique
201112-23:01:45,785 nipype.interface INFO:
stderr 2020-11-12T23:01:45.785025: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-128_ses-1_task-matching_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-128_ses-1_task-matching_run-1_bold_calc.nii.gz in NIFTI storage)
201112-23:01:48,662 nipype.interface INFO:
stderr 2020-11-12T23:01:48.662696:++ 3drefit processed 1 datasets
201112-23:01:48,846 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-23:01:48,847 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_reorient".
201112-23:01:48,855 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-1_task-matching_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_reorient/sub-128_ses-1_task-matching_run-1_bold_calc.nii.gz
201112-23:01:52,335 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-23:01:52,336 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_RPI".
201112-23:01:52,343 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_RPI/sub-128_ses-1_task-matching_run-1_bold_calc_resample.nii.gz
201112-23:01:52,592 nipype.interface INFO:
stderr 2020-11-12T23:01:52.592352:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:01:52,592 nipype.interface INFO:
stderr 2020-11-12T23:01:52.592964:++ Authored by: KR Hammett & RW Cox
201112-23:01:52,956 nipype.interface INFO:
stderr 2020-11-12T23:01:52.956810:++ Output dataset ./sub-128_ses-1_task-matching_run-1_bold_calc_resample_tstat.nii.gz
201112-23:01:53,112 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-23:01:53,113 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_generate_ref".
201112-23:01:53,120 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-1_task-matching_run-1_bold_calc_resample.1D -1Dmatrix_save sub-128_ses-1_task-matching_run-1_bold_calc_resample.aff12.1D -prefix sub-128_ses-1_task-matching_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_RPI/sub-128_ses-1_task-matching_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-1_task-matching_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_generate_ref/sub-128_ses-1_task-matching_run-1_bold_calc_resample.nii.gz
201112-23:01:53,361 nipype.interface INFO:
stderr 2020-11-12T23:01:53.361786:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:01:53,362 nipype.interface INFO:
stderr 2020-11-12T23:01:53.362090:++ Authored by: RW Cox
201112-23:01:53,371 nipype.interface INFO:
stderr 2020-11-12T23:01:53.371772:++ Coarse del was 10, replaced with 3
201112-23:03:15,633 nipype.interface INFO:
stderr 2020-11-12T23:03:15.632884:++ Max displacement in automask = 0.29 (mm) at sub-brick 1
201112-23:03:15,633 nipype.interface INFO:
stderr 2020-11-12T23:03:15.633462:++ Max delta displ in automask = 0.24 (mm) at sub-brick 38
201112-23:03:18,504 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-23:03:18,506 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_motion".
201112-23:03:18,512 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_motion/sub-128_ses-1_task-matching_run-1_bold_calc_resample_volreg.nii.gz
201112-23:03:18,759 nipype.interface INFO:
stderr 2020-11-12T23:03:18.759733:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:03:18,760 nipype.interface INFO:
stderr 2020-11-12T23:03:18.760213:++ Authored by: KR Hammett & RW Cox
201112-23:03:19,125 nipype.interface INFO:
stderr 2020-11-12T23:03:19.125154:++ Output dataset ./sub-128_ses-1_task-matching_run-1_bold_calc_resample_volreg_tstat.nii.gz
201112-23:03:19,276 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-23:03:19,277 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_motion_correct_mcflirt".
201112-23:03:19,284 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_reorient/sub-128_ses-1_task-matching_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_motion_correct_mcflirt/sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_motion/sub-128_ses-1_task-matching_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-23:03:37,654 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-23:03:37,661 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/calculate_FDJ".
201112-23:03:37,668 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-23:03:37,897 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-23:03:37,899 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_frame_wise_displacement_jenkinson".
201112-23:03:37,905 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:03:38,135 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_jenkinson".
201112-23:03:38,137 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_max_displacement".
201112-23:03:38,145 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:03:38,376 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_max_displacement".
201112-23:03:38,378 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_coordinate_transformation".
201112-23:03:38,394 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:03:38,651 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_coordinate_transformation".
201112-23:03:38,660 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_mean_skull".
201112-23:03:38,667 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_mean_skull/sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf.nii.gz
201112-23:03:38,918 nipype.interface INFO:
stderr 2020-11-12T23:03:38.918741:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:03:38,919 nipype.interface INFO:
stderr 2020-11-12T23:03:38.919070:++ Authored by: KR Hammett & RW Cox
201112-23:03:39,310 nipype.interface INFO:
stderr 2020-11-12T23:03:39.310886:++ Output dataset ./sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat.nii.gz
201112-23:03:39,465 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-23:03:39,467 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass".
201112-23:03:39,472 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_mean_skull/sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-23:03:41,303 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-23:03:41,304 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_dilate".
201112-23:03:41,309 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_dilate/sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-23:03:41,964 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-23:03:41,966 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_mask".
201112-23:03:41,972 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_dilate/sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_mask/sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-23:03:42,384 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-23:03:42,385 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/unifize".
201112-23:03:42,391 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/unifize/sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-23:03:42,642 nipype.interface INFO:
stderr 2020-11-12T23:03:42.642540:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:04:56,221 nipype.interface INFO:
stderr 2020-11-12T23:04:56.221727: + Pre-processing: IAV..UW[s4817]Im
201112-23:04:56,237 nipype.interface INFO:
stderr 2020-11-12T23:04:56.237893:++ Output dataset ./uni.nii.gz
201112-23:04:56,238 nipype.interface INFO:
stderr 2020-11-12T23:04:56.238144:++ ===== Elapsed = 73.6 sec
201112-23:04:56,413 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-23:04:56,415 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass".
201112-23:04:56,421 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass/uni.nii.gz
201112-23:04:56,666 nipype.interface INFO:
stderr 2020-11-12T23:04:56.666916:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:04:56,667 nipype.interface INFO:
stderr 2020-11-12T23:04:56.667214:++ Authored by: Emperor Zhark
201112-23:04:56,669 nipype.interface INFO:
stderr 2020-11-12T23:04:56.669734:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass/uni.nii.gz
201112-23:04:56,675 nipype.interface INFO:
stderr 2020-11-12T23:04:56.675237:++ Forming automask
201112-23:04:56,677 nipype.interface INFO:
stderr 2020-11-12T23:04:56.677865: + Fixed clip level = 435.152740
201112-23:04:56,681 nipype.interface INFO:
stderr 2020-11-12T23:04:56.681249: + Used gradual clip level = 363.607758 .. 487.898529
201112-23:04:56,681 nipype.interface INFO:
stderr 2020-11-12T23:04:56.681458: + Number voxels above clip level = 29604
201112-23:04:56,681 nipype.interface INFO:
stderr 2020-11-12T23:04:56.681615: + Clustering voxels ...
201112-23:04:56,682 nipype.interface INFO:
stderr 2020-11-12T23:04:56.682765: + Largest cluster has 29598 voxels
201112-23:04:56,684 nipype.interface INFO:
stderr 2020-11-12T23:04:56.684179: + Clustering voxels ...
201112-23:04:56,685 nipype.interface INFO:
stderr 2020-11-12T23:04:56.685285: + Largest cluster has 29148 voxels
201112-23:04:56,688 nipype.interface INFO:
stderr 2020-11-12T23:04:56.688775: + Filled 942 voxels in small holes; now have 30090 voxels
201112-23:04:56,694 nipype.interface INFO:
stderr 2020-11-12T23:04:56.694083: + Filled 9 voxels in large holes; now have 30099 voxels
201112-23:04:56,695 nipype.interface INFO:
stderr 2020-11-12T23:04:56.695370: + Clustering voxels ...
201112-23:04:56,696 nipype.interface INFO:
stderr 2020-11-12T23:04:56.696465: + Largest cluster has 30096 voxels
201112-23:04:56,696 nipype.interface INFO:
stderr 2020-11-12T23:04:56.696694: + Clustering non-brain voxels ...
201112-23:04:56,696 nipype.interface INFO:
stderr 2020-11-12T23:04:56.696838: + Clustering voxels ...
201112-23:04:56,699 nipype.interface INFO:
stderr 2020-11-12T23:04:56.699700: + Largest cluster has 109124 voxels
201112-23:04:56,700 nipype.interface INFO:
stderr 2020-11-12T23:04:56.700027: + Mask now has 30140 voxels
201112-23:04:56,700 nipype.interface INFO:
stderr 2020-11-12T23:04:56.700179:++ Dilating automask
201112-23:04:56,706 nipype.interface INFO:
stderr 2020-11-12T23:04:56.706668: + Clustering voxels ...
201112-23:04:56,709 nipype.interface INFO:
stderr 2020-11-12T23:04:56.709051: + Largest cluster has 102991 voxels
201112-23:04:56,709 nipype.interface INFO:
stderr 2020-11-12T23:04:56.709392:++ 36273 voxels in the mask [out of 139264: 26.05%]
201112-23:04:56,709 nipype.interface INFO:
stderr 2020-11-12T23:04:56.709566:++ first 10 x-planes are zero [from R]
201112-23:04:56,709 nipype.interface INFO:
stderr 2020-11-12T23:04:56.709727:++ last 8 x-planes are zero [from L]
201112-23:04:56,709 nipype.interface INFO:
stderr 2020-11-12T23:04:56.709871:++ first 5 y-planes are zero [from P]
201112-23:04:56,710 nipype.interface INFO:
stderr 2020-11-12T23:04:56.710019:++ last 8 y-planes are zero [from A]
201112-23:04:56,710 nipype.interface INFO:
stderr 2020-11-12T23:04:56.710152:++ first 0 z-planes are zero [from I]
201112-23:04:56,710 nipype.interface INFO:
stderr 2020-11-12T23:04:56.710287:++ last 1 z-planes are zero [from S]
201112-23:04:56,714 nipype.interface INFO:
stderr 2020-11-12T23:04:56.714258:++ Output dataset ./uni_mask.nii.gz
201112-23:04:56,714 nipype.interface INFO:
stderr 2020-11-12T23:04:56.714457:++ applying mask to original data
201112-23:04:56,715 nipype.interface INFO:
stderr 2020-11-12T23:04:56.715139:++ Writing masked data
201112-23:04:56,729 nipype.interface INFO:
stderr 2020-11-12T23:04:56.729186:++ Output dataset ./uni_masked.nii.gz
201112-23:04:56,729 nipype.interface INFO:
stderr 2020-11-12T23:04:56.729446:++ CPU time = 0.000000 sec
201112-23:04:56,882 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-23:04:56,884 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks".
201112-23:04:56,890 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-23:04:57,290 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-23:04:57,292 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/cal_DVARS".
201112-23:04:57,298 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-23:04:57,879 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-23:04:57,881 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_extract_brain".
201112-23:04:57,888 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_motion_correct_mcflirt/sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-23:04:58,131 nipype.interface INFO:
stderr 2020-11-12T23:04:58.131906:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:04:58,132 nipype.interface INFO:
stderr 2020-11-12T23:04:58.132221:++ Authored by: A cast of thousands
201112-23:05:00,229 nipype.interface INFO:
stderr 2020-11-12T23:05:00.229151:++ Output dataset ./sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-23:05:00,409 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-23:05:00,410 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize".
201112-23:05:00,415 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_extract_brain/sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize/sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-23:05:02,183 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-23:05:02,184 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mask_normalize".
201112-23:05:02,190 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize/sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mask_normalize/sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-23:05:03,49 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-23:05:03,50 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean".
201112-23:05:03,56 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean/sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-23:05:03,299 nipype.interface INFO:
stderr 2020-11-12T23:05:03.299415:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:05:03,299 nipype.interface INFO:
stderr 2020-11-12T23:05:03.299747:++ Authored by: KR Hammett & RW Cox
201112-23:05:03,534 nipype.interface INFO:
stderr 2020-11-12T23:05:03.534400:++ Output dataset ./sub-128_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-23:05:03,691 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-23:05:03,693 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/norm_motion_params".
201112-23:05:03,698 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-23:05:03,931 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-23:05:03,932 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_motion_0/_scan_matching_run-1/motion_plot".
201112-23:05:03,937 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-23:05:04,374 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_motion_0.motion_plot".
201112-23:05:04,375 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_qc___movement_trans_plot".
201112-23:05:04,383 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:05:04,592 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___movement_trans_plot/_scan_matching_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/movement_trans_plot/_scan_matching_run-1/motion_trans_plot.png
201112-23:05:04,609 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_trans_plot".
201112-23:05:04,611 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_qc___movement_rot_plot".
201112-23:05:04,618 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:05:04,831 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___movement_rot_plot/_scan_matching_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/movement_rot_plot/_scan_matching_run-1/motion_rot_plot.png
201112-23:05:04,848 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___movement_rot_plot".
201112-23:05:04,849 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/calc_motion_parameters".
201112-23:05:04,857 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-23:05:05,90 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-23:05:05,92 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_motion_params".
201112-23:05:05,98 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:05:05,328 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_params".
201112-23:05:05,330 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/calculate_FD".
201112-23:05:05,335 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-23:05:05,571 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-23:05:05,572 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_frame_wise_displacement_power".
201112-23:05:05,580 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:05:05,811 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_frame_wise_displacement_power".
201112-23:05:05,813 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/calc_power_parameters".
201112-23:05:05,819 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-23:05:06,51 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-23:05:06,53 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_power_params".
201112-23:05:06,60 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:05:06,290 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_power_params".
201112-23:05:06,292 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_movement_parameters".
201112-23:05:06,299 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:05:06,530 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_movement_parameters".
201112-23:05:06,532 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/func_despiked_0".
201112-23:05:06,538 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-128_ses-1_task-matching_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/func_despiked_0/sub-128_ses-1_task-matching_run-1_bold_calc.nii.gz
201112-23:05:06,794 nipype.interface INFO:
stderr 2020-11-12T23:05:06.794685:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:05:06,795 nipype.interface INFO:
stderr 2020-11-12T23:05:06.795055:++ Authored by: RW Cox
201112-23:05:06,798 nipype.interface INFO:
stderr 2020-11-12T23:05:06.798302:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-23:05:06,798 nipype.interface INFO:
stderr 2020-11-12T23:05:06.798302: such as /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/func_despiked_0/sub-128_ses-1_task-matching_run-1_bold_calc.nii.gz,
201112-23:05:06,798 nipype.interface INFO:
stderr 2020-11-12T23:05:06.798302: or viewing/combining it with volumes of differing obliquity,
201112-23:05:06,798 nipype.interface INFO:
stderr 2020-11-12T23:05:06.798302: you should consider running:
201112-23:05:06,798 nipype.interface INFO:
stderr 2020-11-12T23:05:06.798302: 3dWarp -deoblique
201112-23:05:06,798 nipype.interface INFO:
stderr 2020-11-12T23:05:06.798302: on this and other oblique datasets in the same session.
201112-23:05:06,799 nipype.interface INFO:
stderr 2020-11-12T23:05:06.798302: See 3dWarp -help for details.
201112-23:05:06,799 nipype.interface INFO:
stderr 2020-11-12T23:05:06.799161:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/func_despiked_0/sub-128_ses-1_task-matching_run-1_bold_calc.nii.gz is 36.026867 degrees from plumb.
201112-23:05:06,799 nipype.interface INFO:
stderr 2020-11-12T23:05:06.799352:++ Input dataset is in short format, but output will be in float format
201112-23:05:06,799 nipype.interface INFO:
stderr 2020-11-12T23:05:06.799535:++ ignoring first 0 time points, using last 99
201112-23:05:06,799 nipype.interface INFO:
stderr 2020-11-12T23:05:06.799712:++ using 99 time points => -corder 3
201112-23:05:06,799 nipype.interface INFO:
stderr 2020-11-12T23:05:06.799882:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/func_despiked_0/sub-128_ses-1_task-matching_run-1_bold_calc.nii.gz
201112-23:05:07,157 nipype.interface INFO:
stderr 2020-11-12T23:05:07.156991:++ 34218 voxels in the automask [out of 139264 in dataset]
201112-23:05:07,162 nipype.interface INFO:
stderr 2020-11-12T23:05:07.162562:++ 58553 voxels in the dilated automask [out of 139264 in dataset]
201112-23:05:07,171 nipype.interface INFO:
stderr 2020-11-12T23:05:07.171278:++ Procesing time series with OLD model fit algorithm
201112-23:05:07,171 nipype.interface INFO:
stderr 2020-11-12T23:05:07.171703:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-23:05:07,171 nipype.interface INFO:
stderr 2020-11-12T23:05:07.171888: + [ 3.457% .. 0.072% of normal distribution]
201112-23:05:07,172 nipype.interface INFO:
stderr 2020-11-12T23:05:07.172072: + [ 8.839% .. 3.125% of Laplace distribution]
201112-23:05:07,172 nipype.interface INFO:
stderr 2020-11-12T23:05:07.172232:++ start OpenMP thread #0
201112-23:05:10,372 nipype.interface INFO:
stderr 2020-11-12T23:05:10.372263:..........................
201112-23:05:10,372 nipype.interface INFO:
stderr 2020-11-12T23:05:10.372759:++ Elapsed despike time = 3s 201ms
201112-23:05:10,372 nipype.interface INFO:
stderr 2020-11-12T23:05:10.372911:
201112-23:05:10,373 nipype.interface INFO:
stderr 2020-11-12T23:05:10.373614:++ FINAL: 5796747 data points, 384489 edits [6.633%], 40648 big edits [0.701%]
201112-23:05:13,413 nipype.interface INFO:
stderr 2020-11-12T23:05:13.413525:++ Output dataset ./sub-128_ses-1_task-matching_run-1_bold_calc_despike.nii.gz
201112-23:05:13,603 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_despiked_0".
201112-23:05:13,605 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_matching_run-1/slice_timing".
201112-23:05:13,614 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-23:05:13,614 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_matching_run-1/slice_timing/sub-128_ses-1_task-matching_run-1_bold_calc_despike.nii.gz
201112-23:05:13,829 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-23:05:13,868 nipype.interface INFO:
stderr 2020-11-12T23:05:13.868666:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:05:13,872 nipype.interface INFO:
stderr 2020-11-12T23:05:13.872772:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-23:05:13,873 nipype.interface INFO:
stderr 2020-11-12T23:05:13.872772: such as /outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_matching_run-1/slice_timing/sub-128_ses-1_task-matching_run-1_bold_calc_despike.nii.gz,
201112-23:05:13,873 nipype.interface INFO:
stderr 2020-11-12T23:05:13.872772: or viewing/combining it with volumes of differing obliquity,
201112-23:05:13,873 nipype.interface INFO:
stderr 2020-11-12T23:05:13.872772: you should consider running:
201112-23:05:13,873 nipype.interface INFO:
stderr 2020-11-12T23:05:13.872772: 3dWarp -deoblique
201112-23:05:13,873 nipype.interface INFO:
stderr 2020-11-12T23:05:13.872772: on this and other oblique datasets in the same session.
201112-23:05:13,873 nipype.interface INFO:
stderr 2020-11-12T23:05:13.872772: See 3dWarp -help for details.
201112-23:05:13,874 nipype.interface INFO:
stderr 2020-11-12T23:05:13.873983:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-1/func_slice_timing_correction_0/_scan_matching_run-1/slice_timing/sub-128_ses-1_task-matching_run-1_bold_calc_despike.nii.gz is 36.026867 degrees from plumb.
201112-23:05:17,542 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_slice_timing_correction_0.slice_timing".
201112-23:05:17,544 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique".
201112-23:05:17,589 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift.nii.gz
201112-23:05:17,835 nipype.interface INFO:
stderr 2020-11-12T23:05:17.835421:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:05:17,835 nipype.interface INFO:
stderr 2020-11-12T23:05:17.835750:++ Authored by: RW Cox
201112-23:05:17,847 nipype.interface INFO:
stderr 2020-11-12T23:05:17.847064:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift.nii.gz
201112-23:05:17,848 nipype.interface INFO:
stderr 2020-11-12T23:05:17.848116: + deoblique
201112-23:05:17,848 nipype.interface INFO:
stderr 2020-11-12T23:05:17.848306: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-23:05:19,476 nipype.interface INFO:
stderr 2020-11-12T23:05:19.476846:++ 3drefit processed 1 datasets
201112-23:05:19,654 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-23:05:19,656 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_reorient".
201112-23:05:19,663 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_reorient/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift.nii.gz
201112-23:05:21,864 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-23:05:21,865 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_RPI".
201112-23:05:21,871 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_RPI/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-23:05:22,111 nipype.interface INFO:
stderr 2020-11-12T23:05:22.111319:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:05:22,111 nipype.interface INFO:
stderr 2020-11-12T23:05:22.111621:++ Authored by: KR Hammett & RW Cox
201112-23:05:22,574 nipype.interface INFO:
stderr 2020-11-12T23:05:22.574791:++ Output dataset ./sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-23:05:22,724 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-23:05:22,725 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_generate_ref".
201112-23:05:22,733 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_RPI/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_generate_ref/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-23:05:22,975 nipype.interface INFO:
stderr 2020-11-12T23:05:22.974921:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:05:22,975 nipype.interface INFO:
stderr 2020-11-12T23:05:22.975349:++ Authored by: RW Cox
201112-23:05:22,984 nipype.interface INFO:
stderr 2020-11-12T23:05:22.984890:++ Coarse del was 10, replaced with 3
201112-23:06:43,877 nipype.interface INFO:
stderr 2020-11-12T23:06:43.877622:++ Max displacement in automask = 0.28 (mm) at sub-brick 2
201112-23:06:43,878 nipype.interface INFO:
stderr 2020-11-12T23:06:43.878205:++ Max delta displ in automask = 0.26 (mm) at sub-brick 38
201112-23:06:47,452 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-23:06:47,454 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_motion".
201112-23:06:47,461 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_motion/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-23:06:47,709 nipype.interface INFO:
stderr 2020-11-12T23:06:47.709013:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:06:47,709 nipype.interface INFO:
stderr 2020-11-12T23:06:47.709344:++ Authored by: KR Hammett & RW Cox
201112-23:06:48,321 nipype.interface INFO:
stderr 2020-11-12T23:06:48.321446:++ Output dataset ./sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-23:06:48,478 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-23:06:48,479 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_motion_correct_mcflirt".
201112-23:06:48,486 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_reorient/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_motion_correct_mcflirt/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_motion/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-23:07:05,264 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-23:07:05,271 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_motion_correct".
201112-23:07:05,279 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:07:05,507 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_correct".
201112-23:07:05,508 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_mean_skull".
201112-23:07:05,515 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_mean_skull/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-23:07:05,768 nipype.interface INFO:
stderr 2020-11-12T23:07:05.768867:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:07:05,769 nipype.interface INFO:
stderr 2020-11-12T23:07:05.769251:++ Authored by: KR Hammett & RW Cox
201112-23:07:06,259 nipype.interface INFO:
stderr 2020-11-12T23:07:06.259468:++ Output dataset ./sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-23:07:06,412 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-23:07:06,413 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass".
201112-23:07:06,418 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_mean_skull/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-23:07:08,236 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-23:07:08,238 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_dilate".
201112-23:07:08,244 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_dilate/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-23:07:08,906 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-23:07:08,907 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_mask".
201112-23:07:08,913 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_dilate/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_mask/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-23:07:09,328 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-23:07:09,329 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/unifize".
201112-23:07:09,335 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/unifize/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-23:07:09,585 nipype.interface INFO:
stderr 2020-11-12T23:07:09.585304:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:08:23,256 nipype.interface INFO:
stderr 2020-11-12T23:08:23.256487: + Pre-processing: IAV..UW[s4825]Im
201112-23:08:23,270 nipype.interface INFO:
stderr 2020-11-12T23:08:23.270075:++ Output dataset ./uni.nii.gz
201112-23:08:23,270 nipype.interface INFO:
stderr 2020-11-12T23:08:23.270354:++ ===== Elapsed = 73.7 sec
201112-23:08:23,448 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-23:08:23,450 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass".
201112-23:08:23,455 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass/uni.nii.gz
201112-23:08:23,715 nipype.interface INFO:
stderr 2020-11-12T23:08:23.715507:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:08:23,716 nipype.interface INFO:
stderr 2020-11-12T23:08:23.716069:++ Authored by: Emperor Zhark
201112-23:08:23,719 nipype.interface INFO:
stderr 2020-11-12T23:08:23.719045:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass/uni.nii.gz
201112-23:08:23,724 nipype.interface INFO:
stderr 2020-11-12T23:08:23.724218:++ Forming automask
201112-23:08:23,726 nipype.interface INFO:
stderr 2020-11-12T23:08:23.726213: + Fixed clip level = 435.292847
201112-23:08:23,730 nipype.interface INFO:
stderr 2020-11-12T23:08:23.730312: + Used gradual clip level = 364.187500 .. 487.956482
201112-23:08:23,730 nipype.interface INFO:
stderr 2020-11-12T23:08:23.730557: + Number voxels above clip level = 29610
201112-23:08:23,730 nipype.interface INFO:
stderr 2020-11-12T23:08:23.730729: + Clustering voxels ...
201112-23:08:23,731 nipype.interface INFO:
stderr 2020-11-12T23:08:23.731848: + Largest cluster has 29605 voxels
201112-23:08:23,733 nipype.interface INFO:
stderr 2020-11-12T23:08:23.733223: + Clustering voxels ...
201112-23:08:23,734 nipype.interface INFO:
stderr 2020-11-12T23:08:23.734332: + Largest cluster has 29160 voxels
201112-23:08:23,737 nipype.interface INFO:
stderr 2020-11-12T23:08:23.737727: + Filled 942 voxels in small holes; now have 30102 voxels
201112-23:08:23,743 nipype.interface INFO:
stderr 2020-11-12T23:08:23.743020: + Filled 9 voxels in large holes; now have 30111 voxels
201112-23:08:23,744 nipype.interface INFO:
stderr 2020-11-12T23:08:23.744317: + Clustering voxels ...
201112-23:08:23,745 nipype.interface INFO:
stderr 2020-11-12T23:08:23.745413: + Largest cluster has 30108 voxels
201112-23:08:23,745 nipype.interface INFO:
stderr 2020-11-12T23:08:23.745650: + Clustering non-brain voxels ...
201112-23:08:23,745 nipype.interface INFO:
stderr 2020-11-12T23:08:23.745800: + Clustering voxels ...
201112-23:08:23,748 nipype.interface INFO:
stderr 2020-11-12T23:08:23.748689: + Largest cluster has 109112 voxels
201112-23:08:23,749 nipype.interface INFO:
stderr 2020-11-12T23:08:23.749026: + Mask now has 30152 voxels
201112-23:08:23,749 nipype.interface INFO:
stderr 2020-11-12T23:08:23.749185:++ Dilating automask
201112-23:08:23,755 nipype.interface INFO:
stderr 2020-11-12T23:08:23.755234: + Clustering voxels ...
201112-23:08:23,757 nipype.interface INFO:
stderr 2020-11-12T23:08:23.757657: + Largest cluster has 102984 voxels
201112-23:08:23,758 nipype.interface INFO:
stderr 2020-11-12T23:08:23.757995:++ 36280 voxels in the mask [out of 139264: 26.05%]
201112-23:08:23,758 nipype.interface INFO:
stderr 2020-11-12T23:08:23.758170:++ first 10 x-planes are zero [from R]
201112-23:08:23,758 nipype.interface INFO:
stderr 2020-11-12T23:08:23.758335:++ last 8 x-planes are zero [from L]
201112-23:08:23,758 nipype.interface INFO:
stderr 2020-11-12T23:08:23.758495:++ first 5 y-planes are zero [from P]
201112-23:08:23,758 nipype.interface INFO:
stderr 2020-11-12T23:08:23.758651:++ last 8 y-planes are zero [from A]
201112-23:08:23,758 nipype.interface INFO:
stderr 2020-11-12T23:08:23.758789:++ first 0 z-planes are zero [from I]
201112-23:08:23,758 nipype.interface INFO:
stderr 2020-11-12T23:08:23.758929:++ last 1 z-planes are zero [from S]
201112-23:08:23,763 nipype.interface INFO:
stderr 2020-11-12T23:08:23.763188:++ Output dataset ./uni_mask.nii.gz
201112-23:08:23,763 nipype.interface INFO:
stderr 2020-11-12T23:08:23.763367:++ applying mask to original data
201112-23:08:23,764 nipype.interface INFO:
stderr 2020-11-12T23:08:23.764102:++ Writing masked data
201112-23:08:23,778 nipype.interface INFO:
stderr 2020-11-12T23:08:23.778757:++ Output dataset ./uni_masked.nii.gz
201112-23:08:23,779 nipype.interface INFO:
stderr 2020-11-12T23:08:23.779042:++ CPU time = 0.000000 sec
201112-23:08:23,928 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-23:08:23,930 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks".
201112-23:08:23,941 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-23:08:24,343 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-23:08:24,345 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-23:08:24,350 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-23:08:24,580 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-23:08:24,581 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-23:08:24,587 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-23:08:24,842 nipype.interface INFO:
stderr 2020-11-12T23:08:24.842516:++ no -frac option: defaulting to -union
201112-23:08:24,843 nipype.interface INFO:
stderr 2020-11-12T23:08:24.843004:++ processing 1 input dataset(s), NN=2...
201112-23:08:24,843 nipype.interface INFO:
stderr 2020-11-12T23:08:24.843249:++ padding all datasets by 0 (for dilations)
201112-23:08:24,850 nipype.interface INFO:
stderr 2020-11-12T23:08:24.850766:++ frac 0 over 1 volumes gives min count 0
201112-23:08:24,851 nipype.interface INFO:
stderr 2020-11-12T23:08:24.851310:++ voxel limits: 0 clipped, 36215 survived, 103049 were zero
201112-23:08:24,851 nipype.interface INFO:
stderr 2020-11-12T23:08:24.851554:++ writing result sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-23:08:24,856 nipype.interface INFO:
stderr 2020-11-12T23:08:24.856813:++ Output dataset ./sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-23:08:25,12 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-23:08:25,14 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_functional_brain_mask".
201112-23:08:25,21 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:08:25,249 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask".
201112-23:08:25,251 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/functional_brain_mask_derivative_0".
201112-23:08:25,255 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-23:08:25,469 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-23:08:25,474 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-23:08:25,962 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201112-23:08:25,979 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.functional_brain_mask_derivative_0".
201112-23:08:25,981 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_extract_brain".
201112-23:08:25,989 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_motion_correct_mcflirt/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-23:08:26,233 nipype.interface INFO:
stderr 2020-11-12T23:08:26.232966:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:08:26,233 nipype.interface INFO:
stderr 2020-11-12T23:08:26.233279:++ Authored by: A cast of thousands
201112-23:08:28,582 nipype.interface INFO:
stderr 2020-11-12T23:08:28.582664:++ Output dataset ./sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-23:08:28,762 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-23:08:28,763 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize".
201112-23:08:28,769 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_extract_brain/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-23:08:30,560 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-23:08:30,561 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-23:08:30,567 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-23:08:31,340 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.GlobalSignal_mean".
201112-23:08:31,341 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-23:08:31,346 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-23:08:31,588 nipype.interface INFO:
stderr 2020-11-12T23:08:31.588632:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:08:31,588 nipype.interface INFO:
stderr 2020-11-12T23:08:31.588931:++ Authored by: KR Hammett & RW Cox
201112-23:08:32,21 nipype.interface INFO:
stderr 2020-11-12T23:08:32.021907:++ Output dataset ./sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-23:08:32,173 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.functional_mean".
201112-23:08:32,174 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-1/std_dev".
201112-23:08:32,182 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-1/std_dev/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-23:08:32,423 nipype.interface INFO:
stderr 2020-11-12T23:08:32.422976:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:08:32,423 nipype.interface INFO:
stderr 2020-11-12T23:08:32.423273:++ Authored by: KR Hammett & RW Cox
201112-23:08:32,823 nipype.interface INFO:
stderr 2020-11-12T23:08:32.823648:++ Output dataset ./sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-23:08:32,977 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev".
201112-23:08:32,979 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_functional_preprocessed".
201112-23:08:32,987 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:08:33,217 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed".
201112-23:08:33,218 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mask_normalize".
201112-23:08:33,224 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mask_normalize/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-23:08:34,93 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-23:08:34,95 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_functional_preprocessed_mask".
201112-23:08:34,102 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:08:34,331 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_preprocessed_mask".
201112-23:08:34,333 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean".
201112-23:08:34,339 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-23:08:34,582 nipype.interface INFO:
stderr 2020-11-12T23:08:34.582372:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:08:34,582 nipype.interface INFO:
stderr 2020-11-12T23:08:34.582967:++ Authored by: KR Hammett & RW Cox
201112-23:08:35,1 nipype.interface INFO:
stderr 2020-11-12T23:08:35.001674:++ Output dataset ./sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-23:08:35,159 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-23:08:35,160 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_mean_functional".
201112-23:08:35,167 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:08:35,397 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional".
201112-23:08:35,399 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/norm_motion_params".
201112-23:08:35,404 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-23:08:35,642 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-23:08:35,643 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_slice_time_corrected".
201112-23:08:35,650 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:08:35,885 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_slice_time_corrected".
201112-23:08:35,887 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_raw_functional".
201112-23:08:35,895 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:08:36,215 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_raw_functional".
201112-23:08:36,216 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_gather_0/_scan_matching_run-1/check_func_scan".
201112-23:08:36,246 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-23:08:36,482 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_gather_0.check_func_scan".
201112-23:08:36,493 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_dataflow_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_dataflow_0/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3".
201112-23:08:36,498 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-23:08:36,748 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_dataflow_0.check_for_s3".
201112-23:08:36,749 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_dataflow_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_dataflow_0/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3".
201112-23:08:36,754 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-23:08:37,28 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_dataflow_0.check_for_s3".
201112-23:08:37,29 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_tmpl" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl".
201112-23:08:37,35 nipype.workflow INFO:
[Node] Running "lap_tmpl" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 T_template0_maths.nii.gz Laplacian /ants_template/oasis/T_template0.nii.gz 1.5 1
201112-23:08:46,766 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_tmpl".
201112-23:08:46,768 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.mrg_tmpl" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/mrg_tmpl".
201112-23:08:46,774 nipype.workflow INFO:
[Node] Running "mrg_tmpl" ("nipype.interfaces.utility.base.Merge")
201112-23:08:47,4 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.mrg_tmpl".
201112-23:08:47,6 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_tmpl" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/res_tmpl".
201112-23:08:47,11 nipype.workflow INFO:
[Node] Running "res_tmpl" ("CPAC.utils.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command:
ResampleImageBySpacing 3 /ants_template/oasis/T_template0.nii.gz T_template0_resampled.nii.gz 4 4 4 1
201112-23:08:47,665 nipype.interface INFO:
stdout 2020-11-12T23:08:47.665851: spacing [1, 1, 1] dim 3
201112-23:08:47,666 nipype.interface INFO:
stdout 2020-11-12T23:08:47.666336: spacing2 [4, 4, 4]
201112-23:08:47,666 nipype.interface INFO:
stdout 2020-11-12T23:08:47.666550: smoothing by : 3 dir 0
201112-23:08:48,6 nipype.interface INFO:
stdout 2020-11-12T23:08:48.006127: smoothing by : 3 dir 1
201112-23:08:48,427 nipype.interface INFO:
stdout 2020-11-12T23:08:48.427497: smoothing by : 3 dir 2
201112-23:08:49,209 nipype.interface INFO:
stdout 2020-11-12T23:08:49.209035: out space [4, 4, 4]
201112-23:08:49,209 nipype.interface INFO:
stdout 2020-11-12T23:08:49.209404: output size [54, 64, 72] spc [4, 4, 4]
201112-23:08:49,451 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_tmpl".
201112-23:08:49,453 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_gather_0/check_for_s3".
201112-23:08:49,460 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-23:08:49,749 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_gather_0.check_for_s3".
201112-23:08:49,751 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_deoblique".
201112-23:08:49,921 nipype.workflow INFO:
[Node] Running "anat_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-128_ses-1_T1w.nii.gz
201112-23:08:50,168 nipype.interface INFO:
stderr 2020-11-12T23:08:50.168640:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:08:50,169 nipype.interface INFO:
stderr 2020-11-12T23:08:50.169046:++ Authored by: RW Cox
201112-23:08:50,169 nipype.interface INFO:
stderr 2020-11-12T23:08:50.169676:** AFNI converts NIFTI_datatype=4 (INT16) in file /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-128_ses-1_T1w.nii.gz to FLOAT32
201112-23:08:50,169 nipype.interface INFO:
stderr 2020-11-12T23:08:50.169883: Warnings of this type will be muted for this session.
201112-23:08:50,170 nipype.interface INFO:
stderr 2020-11-12T23:08:50.169883: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201112-23:08:50,170 nipype.interface INFO:
stderr 2020-11-12T23:08:50.170797:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-128_ses-1_T1w.nii.gz
201112-23:08:50,171 nipype.interface INFO:
stderr 2020-11-12T23:08:50.171445: + deoblique
201112-23:08:50,171 nipype.interface INFO:
stderr 2020-11-12T23:08:50.171653: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-128_ses-1_T1w.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-128_ses-1_T1w.nii.gz in NIFTI storage)
201112-23:08:53,516 nipype.interface INFO:
stderr 2020-11-12T23:08:53.515991:++ 3drefit processed 1 datasets
201112-23:08:53,700 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_deoblique".
201112-23:08:53,702 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient".
201112-23:08:53,710 nipype.workflow INFO:
[Node] Running "anat_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-1_T1w_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-128_ses-1_T1w.nii.gz
201112-23:08:57,616 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_reorient".
201112-23:08:57,617 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_skullstrip_0.skull_edge" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_skullstrip_0/skull_edge".
201112-23:08:57,623 nipype.workflow INFO:
[Node] Running "skull_edge" ("CPAC.utils.interfaces.function.Function")
201112-23:09:01,714 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_skullstrip_0.skull_edge".
201112-23:09:01,716 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_skullstrip_0.montage_skull.resample_o" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_skullstrip_0/montage_skull/resample_o".
201112-23:09:01,722 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201112-23:09:03,387 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_skullstrip_0.montage_skull.resample_o".
201112-23:09:03,389 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.truncate_images" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/truncate_images".
201112-23:09:03,395 nipype.workflow INFO:
[Node] Setting-up "_truncate_images0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/truncate_images/mapflow/_truncate_images0".
201112-23:09:03,400 nipype.workflow INFO:
[Node] Running "_truncate_images0" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-128_ses-1_T1w_resample_maths.nii.gz TruncateImageIntensity /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-128_ses-1_T1w_resample.nii.gz 0.01 0.999 256
201112-23:09:07,926 nipype.workflow INFO:
[Node] Finished "_truncate_images0".
201112-23:09:07,931 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.truncate_images".
201112-23:09:07,931 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.inu_n4" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4".
201112-23:09:07,939 nipype.workflow INFO:
[Node] Setting-up "_inu_n40" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40".
201112-23:09:07,944 nipype.workflow INFO:
[Node] Running "_inu_n40" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/truncate_images/mapflow/_truncate_images0/sub-128_ses-1_T1w_resample_maths.nii.gz --convergence [ 50x50x50x50, 1e-07 ] --output sub-128_ses-1_T1w_resample_maths_corrected.nii.gz --shrink-factor 4
201112-23:12:33,524 nipype.workflow INFO:
[Node] Finished "_inu_n40".
201112-23:12:33,528 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.inu_n4".
201112-23:12:33,529 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_target" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_target".
201112-23:12:33,535 nipype.workflow INFO:
[Node] Running "lap_target" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-128_ses-1_T1w_resample_maths_corrected_maths.nii.gz Laplacian /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-128_ses-1_T1w_resample_maths_corrected.nii.gz 1.5 1
201112-23:12:42,631 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_target".
201112-23:12:42,633 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.mrg_target" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/mrg_target".
201112-23:12:42,640 nipype.workflow INFO:
[Node] Running "mrg_target" ("nipype.interfaces.utility.base.Merge")
201112-23:12:42,867 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.mrg_target".
201112-23:12:42,868 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_target" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/res_target".
201112-23:12:42,874 nipype.workflow INFO:
[Node] Running "res_target" ("CPAC.utils.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command:
ResampleImageBySpacing 3 /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-128_ses-1_T1w_resample_maths_corrected.nii.gz sub-128_ses-1_T1w_resample_maths_corrected_resampled.nii.gz 4 4 4 1
201112-23:12:43,561 nipype.interface INFO:
stdout 2020-11-12T23:12:43.561321: spacing [0.999999, 1, 1] dim 3
201112-23:12:43,561 nipype.interface INFO:
stdout 2020-11-12T23:12:43.561793: spacing2 [4, 4, 4]
201112-23:12:43,562 nipype.interface INFO:
stdout 2020-11-12T23:12:43.561995: smoothing by : 3 dir 0
201112-23:12:43,826 nipype.interface INFO:
stdout 2020-11-12T23:12:43.826535: smoothing by : 3 dir 1
201112-23:12:44,166 nipype.interface INFO:
stdout 2020-11-12T23:12:44.166555: smoothing by : 3 dir 2
201112-23:12:44,784 nipype.interface INFO:
stdout 2020-11-12T23:12:44.784814: out space [4, 4, 4]
201112-23:12:44,785 nipype.interface INFO:
stdout 2020-11-12T23:12:44.785161: output size [47, 64, 64] spc [4, 4, 4]
201112-23:12:45,20 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_target".
201112-23:12:45,21 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.init_aff" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/init_aff".
201112-23:12:45,28 nipype.workflow INFO:
[Node] Running "init_aff" ("CPAC.utils.interfaces.ants.AI"), a CommandLine Interface with command:
antsAI -c [10,0.000001,10] -d 3 -x /ants_template/oasis/T_template0_BrainCerebellumRegistrationMask.nii.gz -m Mattes[/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/res_tmpl/T_template0_resampled.nii.gz,/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/res_target/sub-128_ses-1_T1w_resample_maths_corrected_resampled.nii.gz,32,Regular,0.250000] -o initialization.mat -p 0 -s [15.000000,0.100000] -t Affine[0.100000] -v 1
201112-23:12:45,561 nipype.interface INFO:
stdout 2020-11-12T23:12:45.561319:Using the Mattes MI metric (number of bins = 32)
201112-23:12:51,321 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.init_aff".
201112-23:12:51,324 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.norm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/norm".
201112-23:12:51,336 nipype.workflow INFO:
[Node] Running "norm" ("CPAC.utils.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --masks /ants_template/oasis/T_template0_BrainCerebellumRegistrationMask.nii.gz --float 1 --initial-moving-transform [ /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ anat_to_template, anat_to_template_Warped.nii.gz ] --transform Rigid[ 0.1 ] --metric MI[ /ants_template/oasis/T_template0.nii.gz, /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-128_ses-1_T1w_resample_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --transform Affine[ 0.1 ] --metric MI[ /ants_template/oasis/T_template0.nii.gz, /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-128_ses-1_T1w_resample_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /ants_template/oasis/T_template0.nii.gz, /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-128_ses-1_T1w_resample_maths_corrected.nii.gz, 0.5, 4, None, 1 ] --metric CC[ /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl/T_template0_maths.nii.gz, /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_target/sub-128_ses-1_T1w_resample_maths_corrected_maths.nii.gz, 0.5, 4, None, 1 ] --convergence [ 50x10x0, 1e-09, 15 ] --smoothing-sigmas 2.0x1.0x0.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 -v --winsorize-image-intensities [ 0.025, 0.975 ] --write-composite-transform 0
201112-23:12:51,614 nipype.interface INFO:
stdout 2020-11-12T23:12:51.614536:All_Command_lines_OK
201112-23:12:51,614 nipype.interface INFO:
stdout 2020-11-12T23:12:51.614961:Using single precision for computations.
201112-23:12:51,777 nipype.interface INFO:
stdout 2020-11-12T23:12:51.777075:=============================================================================
201112-23:12:51,777 nipype.interface INFO:
stdout 2020-11-12T23:12:51.777254:The composite transform comprises the following transforms (in order):
201112-23:12:51,777 nipype.interface INFO:
stdout 2020-11-12T23:12:51.777450: 1. /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/init_aff/initialization.mat (type = AffineTransform)
201112-23:12:51,777 nipype.interface INFO:
stdout 2020-11-12T23:12:51.777612:=============================================================================
201112-23:12:51,777 nipype.interface INFO:
stdout 2020-11-12T23:12:51.777806: Reading mask(s).
201112-23:12:51,777 nipype.interface INFO:
stdout 2020-11-12T23:12:51.777946: Registration stage 0
201112-23:12:51,922 nipype.interface INFO:
stdout 2020-11-12T23:12:51.922412: Fixed mask = /ants_template/oasis/T_template0_BrainCerebellumRegistrationMask.nii.gz
201112-23:12:51,922 nipype.interface INFO:
stdout 2020-11-12T23:12:51.922832: number of levels = 4
201112-23:12:51,923 nipype.interface INFO:
stdout 2020-11-12T23:12:51.923023: number of levels = 4
201112-23:12:51,923 nipype.interface INFO:
stdout 2020-11-12T23:12:51.923197: number of levels = 3
201112-23:12:51,923 nipype.interface INFO:
stdout 2020-11-12T23:12:51.923368: fixed image: /ants_template/oasis/T_template0.nii.gz
201112-23:12:51,923 nipype.interface INFO:
stdout 2020-11-12T23:12:51.923517: moving image: /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-128_ses-1_T1w_resample_maths_corrected.nii.gz
201112-23:12:52,689 nipype.interface INFO:
stdout 2020-11-12T23:12:52.689062: fixed image: /ants_template/oasis/T_template0.nii.gz
201112-23:12:52,689 nipype.interface INFO:
stdout 2020-11-12T23:12:52.689398: moving image: /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-128_ses-1_T1w_resample_maths_corrected.nii.gz
201112-23:12:53,436 nipype.interface INFO:
stdout 2020-11-12T23:12:53.436875: fixed image: /ants_template/oasis/T_template0.nii.gz
201112-23:12:53,437 nipype.interface INFO:
stdout 2020-11-12T23:12:53.437198: moving image: /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-128_ses-1_T1w_resample_maths_corrected.nii.gz
201112-23:12:54,192 nipype.interface INFO:
stdout 2020-11-12T23:12:54.192841: fixed image: /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl/T_template0_maths.nii.gz
201112-23:12:54,193 nipype.interface INFO:
stdout 2020-11-12T23:12:54.193428: moving image: /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_target/sub-128_ses-1_T1w_resample_maths_corrected_maths.nii.gz
201112-23:12:54,972 nipype.interface INFO:
stdout 2020-11-12T23:12:54.972699:Dimension = 3
201112-23:12:54,973 nipype.interface INFO:
stdout 2020-11-12T23:12:54.973036:Number of stages = 3
201112-23:12:54,973 nipype.interface INFO:
stdout 2020-11-12T23:12:54.973183:Use Histogram Matching true
201112-23:12:54,973 nipype.interface INFO:
stdout 2020-11-12T23:12:54.973321:Winsorize image intensities true
201112-23:12:54,973 nipype.interface INFO:
stdout 2020-11-12T23:12:54.973515:Lower quantile = 0.025
201112-23:12:54,973 nipype.interface INFO:
stdout 2020-11-12T23:12:54.973666:Upper quantile = 0.975
201112-23:12:54,973 nipype.interface INFO:
stdout 2020-11-12T23:12:54.973836:Stage 1 State
201112-23:12:54,973 nipype.interface INFO:
stdout 2020-11-12T23:12:54.973972: Image metric = Mattes
201112-23:12:54,974 nipype.interface INFO:
stdout 2020-11-12T23:12:54.974135: Fixed image = Image (0x555555c46520)
201112-23:12:54,974 nipype.interface INFO:
stdout 2020-11-12T23:12:54.974135: RTTI typeinfo: itk::Image<float, 3u>
201112-23:12:54,974 nipype.interface INFO:
stdout 2020-11-12T23:12:54.974359: Reference Count: 2
201112-23:12:54,974 nipype.interface INFO:
stdout 2020-11-12T23:12:54.974500: Modified Time: 1602
201112-23:12:54,974 nipype.interface INFO:
stdout 2020-11-12T23:12:54.974630: Debug: Off
201112-23:12:54,974 nipype.interface INFO:
stdout 2020-11-12T23:12:54.974630: Object Name:
201112-23:12:54,974 nipype.interface INFO:
stdout 2020-11-12T23:12:54.974848: Observers:
201112-23:12:54,974 nipype.interface INFO:
stdout 2020-11-12T23:12:54.974848: none
201112-23:12:54,975 nipype.interface INFO:
stdout 2020-11-12T23:12:54.974848: Source: (none)
201112-23:12:54,975 nipype.interface INFO:
stdout 2020-11-12T23:12:54.974848: Source output name: (none)
201112-23:12:54,975 nipype.interface INFO:
stdout 2020-11-12T23:12:54.974848: Release Data: Off
201112-23:12:54,975 nipype.interface INFO:
stdout 2020-11-12T23:12:54.974848: Data Released: False
201112-23:12:54,975 nipype.interface INFO:
stdout 2020-11-12T23:12:54.974848: Global Release Data: Off
201112-23:12:54,975 nipype.interface INFO:
stdout 2020-11-12T23:12:54.974848: PipelineMTime: 0
201112-23:12:54,975 nipype.interface INFO:
stdout 2020-11-12T23:12:54.975558: UpdateMTime: 1435
201112-23:12:54,975 nipype.interface INFO:
stdout 2020-11-12T23:12:54.975697: RealTimeStamp: 0 seconds
201112-23:12:54,975 nipype.interface INFO:
stdout 2020-11-12T23:12:54.975833: LargestPossibleRegion:
201112-23:12:54,975 nipype.interface INFO:
stdout 2020-11-12T23:12:54.975970: Dimension: 3
201112-23:12:54,976 nipype.interface INFO:
stdout 2020-11-12T23:12:54.976104: Index: [0, 0, 0]
201112-23:12:54,976 nipype.interface INFO:
stdout 2020-11-12T23:12:54.976237: Size: [216, 256, 291]
201112-23:12:54,976 nipype.interface INFO:
stdout 2020-11-12T23:12:54.976367: BufferedRegion:
201112-23:12:54,976 nipype.interface INFO:
stdout 2020-11-12T23:12:54.976538: Dimension: 3
201112-23:12:54,976 nipype.interface INFO:
stdout 2020-11-12T23:12:54.976679: Index: [0, 0, 0]
201112-23:12:54,976 nipype.interface INFO:
stdout 2020-11-12T23:12:54.976842: Size: [216, 256, 291]
201112-23:12:54,976 nipype.interface INFO:
stdout 2020-11-12T23:12:54.976973: RequestedRegion:
201112-23:12:54,977 nipype.interface INFO:
stdout 2020-11-12T23:12:54.977103: Dimension: 3
201112-23:12:54,977 nipype.interface INFO:
stdout 2020-11-12T23:12:54.977236: Index: [0, 0, 0]
201112-23:12:54,977 nipype.interface INFO:
stdout 2020-11-12T23:12:54.977365: Size: [216, 256, 291]
201112-23:12:54,977 nipype.interface INFO:
stdout 2020-11-12T23:12:54.977517: Spacing: [1, 1, 1]
201112-23:12:54,977 nipype.interface INFO:
stdout 2020-11-12T23:12:54.977654: Origin: [0, 293, 0]
201112-23:12:54,977 nipype.interface INFO:
stdout 2020-11-12T23:12:54.977787: Direction:
201112-23:12:54,977 nipype.interface INFO:
stdout 2020-11-12T23:12:54.977926:1 0 0
201112-23:12:54,978 nipype.interface INFO:
stdout 2020-11-12T23:12:54.977926:0 -0 -1
201112-23:12:54,978 nipype.interface INFO:
stdout 2020-11-12T23:12:54.977926:0 -1 -0
201112-23:12:54,978 nipype.interface INFO:
stdout 2020-11-12T23:12:54.977926:
201112-23:12:54,978 nipype.interface INFO:
stdout 2020-11-12T23:12:54.978308: IndexToPointMatrix:
201112-23:12:54,978 nipype.interface INFO:
stdout 2020-11-12T23:12:54.978454:1 0 0
201112-23:12:54,978 nipype.interface INFO:
stdout 2020-11-12T23:12:54.978454:0 0 -1
201112-23:12:54,978 nipype.interface INFO:
stdout 2020-11-12T23:12:54.978454:0 -1 0
201112-23:12:54,978 nipype.interface INFO:
stdout 2020-11-12T23:12:54.978454:
201112-23:12:54,978 nipype.interface INFO:
stdout 2020-11-12T23:12:54.978841: PointToIndexMatrix:
201112-23:12:54,978 nipype.interface INFO:
stdout 2020-11-12T23:12:54.978976:1 0 0
201112-23:12:54,979 nipype.interface INFO:
stdout 2020-11-12T23:12:54.978976:0 0 -1
201112-23:12:54,979 nipype.interface INFO:
stdout 2020-11-12T23:12:54.978976:0 -1 0
201112-23:12:54,979 nipype.interface INFO:
stdout 2020-11-12T23:12:54.978976:
201112-23:12:54,979 nipype.interface INFO:
stdout 2020-11-12T23:12:54.979354: Inverse Direction:
201112-23:12:54,979 nipype.interface INFO:
stdout 2020-11-12T23:12:54.979514:1 0 0
201112-23:12:54,979 nipype.interface INFO:
stdout 2020-11-12T23:12:54.979514:0 0 -1
201112-23:12:54,979 nipype.interface INFO:
stdout 2020-11-12T23:12:54.979514:0 -1 0
201112-23:12:54,979 nipype.interface INFO:
stdout 2020-11-12T23:12:54.979514:
201112-23:12:54,979 nipype.interface INFO:
stdout 2020-11-12T23:12:54.979912: PixelContainer:
201112-23:12:54,980 nipype.interface INFO:
stdout 2020-11-12T23:12:54.980051: ImportImageContainer (0x555555c355d0)
201112-23:12:54,980 nipype.interface INFO:
stdout 2020-11-12T23:12:54.980051: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201112-23:12:54,980 nipype.interface INFO:
stdout 2020-11-12T23:12:54.980264: Reference Count: 1
201112-23:12:54,980 nipype.interface INFO:
stdout 2020-11-12T23:12:54.980403: Modified Time: 1432
201112-23:12:54,980 nipype.interface INFO:
stdout 2020-11-12T23:12:54.980541: Debug: Off
201112-23:12:54,980 nipype.interface INFO:
stdout 2020-11-12T23:12:54.980541: Object Name:
201112-23:12:54,980 nipype.interface INFO:
stdout 2020-11-12T23:12:54.980760: Observers:
201112-23:12:54,980 nipype.interface INFO:
stdout 2020-11-12T23:12:54.980760: none
201112-23:12:54,980 nipype.interface INFO:
stdout 2020-11-12T23:12:54.980760: Pointer: 0x2aaab48b5010
201112-23:12:54,981 nipype.interface INFO:
stdout 2020-11-12T23:12:54.981052: Container manages memory: true
201112-23:12:54,981 nipype.interface INFO:
stdout 2020-11-12T23:12:54.981182: Size: 16091136
201112-23:12:54,981 nipype.interface INFO:
stdout 2020-11-12T23:12:54.981312: Capacity: 16091136
201112-23:12:54,983 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:
201112-23:12:54,983 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Moving image = Image (0x555555c43360)
201112-23:12:54,983 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: RTTI typeinfo: itk::Image<float, 3u>
201112-23:12:54,983 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Reference Count: 2
201112-23:12:54,983 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Modified Time: 1603
201112-23:12:54,983 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Debug: Off
201112-23:12:54,983 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Object Name:
201112-23:12:54,983 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Observers:
201112-23:12:54,983 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: none
201112-23:12:54,983 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Source: (none)
201112-23:12:54,983 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Source output name: (none)
201112-23:12:54,984 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Release Data: Off
201112-23:12:54,984 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Data Released: False
201112-23:12:54,984 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Global Release Data: Off
201112-23:12:54,984 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: PipelineMTime: 0
201112-23:12:54,984 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: UpdateMTime: 1600
201112-23:12:54,984 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: RealTimeStamp: 0 seconds
201112-23:12:54,984 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: LargestPossibleRegion:
201112-23:12:54,984 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Dimension: 3
201112-23:12:54,984 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Index: [0, 0, 0]
201112-23:12:54,984 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Size: [192, 256, 256]
201112-23:12:54,984 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: BufferedRegion:
201112-23:12:54,984 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Dimension: 3
201112-23:12:54,984 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Index: [0, 0, 0]
201112-23:12:54,985 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Size: [192, 256, 256]
201112-23:12:54,985 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: RequestedRegion:
201112-23:12:54,985 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Dimension: 3
201112-23:12:54,985 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Index: [0, 0, 0]
201112-23:12:54,985 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Size: [192, 256, 256]
201112-23:12:54,985 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Spacing: [0.999999, 1, 1]
201112-23:12:54,985 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Origin: [-109.238, 124.317, -144.958]
201112-23:12:54,985 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Direction:
201112-23:12:54,985 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:1 0 0
201112-23:12:54,985 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 -1 0
201112-23:12:54,985 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 0 1
201112-23:12:54,985 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:
201112-23:12:54,986 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: IndexToPointMatrix:
201112-23:12:54,986 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0.999999 0 0
201112-23:12:54,986 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 -1 0
201112-23:12:54,986 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 0 1
201112-23:12:54,986 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:
201112-23:12:54,986 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: PointToIndexMatrix:
201112-23:12:54,986 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:1 0 0
201112-23:12:54,986 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 -1 0
201112-23:12:54,986 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 0 1
201112-23:12:54,986 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:
201112-23:12:54,986 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Inverse Direction:
201112-23:12:54,986 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:1 0 0
201112-23:12:54,986 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 -1 0
201112-23:12:54,987 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 0 1
201112-23:12:54,987 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:
201112-23:12:54,987 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: PixelContainer:
201112-23:12:54,987 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: ImportImageContainer (0x555555c36680)
201112-23:12:54,987 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201112-23:12:54,987 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Reference Count: 1
201112-23:12:54,987 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Modified Time: 1597
201112-23:12:54,987 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Debug: Off
201112-23:12:54,987 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Object Name:
201112-23:12:54,987 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Observers:
201112-23:12:54,987 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: none
201112-23:12:54,987 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Pointer: 0x2aaab8618010
201112-23:12:54,988 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Container manages memory: true
201112-23:12:54,988 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Size: 12582912
201112-23:12:54,988 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Capacity: 12582912
201112-23:12:54,988 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:
201112-23:12:54,988 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Weighting = 1
201112-23:12:54,988 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Sampling strategy = regular
201112-23:12:54,988 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Number of bins = 32
201112-23:12:54,988 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Radius = 4
201112-23:12:54,988 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Sampling percentage = 0.25
201112-23:12:54,988 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Transform = Rigid
201112-23:12:54,988 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Gradient step = 0.1
201112-23:12:54,988 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Update field sigma (voxel space) = 0
201112-23:12:54,989 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Total field sigma (voxel space) = 0
201112-23:12:54,989 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Update field time sigma = 0
201112-23:12:54,989 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Total field time sigma = 0
201112-23:12:54,989 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Number of time indices = 0
201112-23:12:54,989 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Number of time point samples = 0
201112-23:12:54,989 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:Stage 2 State
201112-23:12:54,989 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Image metric = Mattes
201112-23:12:54,989 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Fixed image = Image (0x555555c45e20)
201112-23:12:54,989 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: RTTI typeinfo: itk::Image<float, 3u>
201112-23:12:54,989 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Reference Count: 2
201112-23:12:54,989 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Modified Time: 1932
201112-23:12:54,989 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Debug: Off
201112-23:12:54,989 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Object Name:
201112-23:12:54,990 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Observers:
201112-23:12:54,990 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: none
201112-23:12:54,990 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Source: (none)
201112-23:12:54,990 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Source output name: (none)
201112-23:12:54,990 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Release Data: Off
201112-23:12:54,990 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Data Released: False
201112-23:12:54,990 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Global Release Data: Off
201112-23:12:54,990 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: PipelineMTime: 0
201112-23:12:54,990 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: UpdateMTime: 1765
201112-23:12:54,990 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: RealTimeStamp: 0 seconds
201112-23:12:54,990 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: LargestPossibleRegion:
201112-23:12:54,990 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Dimension: 3
201112-23:12:54,990 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Index: [0, 0, 0]
201112-23:12:54,991 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Size: [216, 256, 291]
201112-23:12:54,991 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: BufferedRegion:
201112-23:12:54,991 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Dimension: 3
201112-23:12:54,991 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Index: [0, 0, 0]
201112-23:12:54,991 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Size: [216, 256, 291]
201112-23:12:54,991 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: RequestedRegion:
201112-23:12:54,991 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Dimension: 3
201112-23:12:54,991 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Index: [0, 0, 0]
201112-23:12:54,991 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Size: [216, 256, 291]
201112-23:12:54,991 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Spacing: [1, 1, 1]
201112-23:12:54,991 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Origin: [0, 293, 0]
201112-23:12:54,991 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Direction:
201112-23:12:54,992 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:1 0 0
201112-23:12:54,992 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 -0 -1
201112-23:12:54,992 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 -1 -0
201112-23:12:54,992 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:
201112-23:12:54,992 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: IndexToPointMatrix:
201112-23:12:54,992 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:1 0 0
201112-23:12:54,992 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 0 -1
201112-23:12:54,992 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 -1 0
201112-23:12:54,992 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:
201112-23:12:54,992 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: PointToIndexMatrix:
201112-23:12:54,992 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:1 0 0
201112-23:12:54,992 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 0 -1
201112-23:12:54,993 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 -1 0
201112-23:12:54,993 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:
201112-23:12:54,993 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Inverse Direction:
201112-23:12:54,993 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:1 0 0
201112-23:12:54,993 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 0 -1
201112-23:12:54,993 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 -1 0
201112-23:12:54,993 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:
201112-23:12:54,993 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: PixelContainer:
201112-23:12:54,993 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: ImportImageContainer (0x555555c36800)
201112-23:12:54,993 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201112-23:12:54,993 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Reference Count: 1
201112-23:12:54,993 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Modified Time: 1762
201112-23:12:54,993 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Debug: Off
201112-23:12:54,994 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Object Name:
201112-23:12:54,994 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Observers:
201112-23:12:54,994 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: none
201112-23:12:54,994 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Pointer: 0x2aaabb619010
201112-23:12:54,994 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Container manages memory: true
201112-23:12:54,994 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Size: 16091136
201112-23:12:54,994 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Capacity: 16091136
201112-23:12:54,994 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:
201112-23:12:54,994 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Moving image = Image (0x555555c44e80)
201112-23:12:54,994 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: RTTI typeinfo: itk::Image<float, 3u>
201112-23:12:54,994 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Reference Count: 2
201112-23:12:54,994 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Modified Time: 1933
201112-23:12:54,995 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Debug: Off
201112-23:12:54,995 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Object Name:
201112-23:12:54,995 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Observers:
201112-23:12:54,995 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: none
201112-23:12:54,995 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Source: (none)
201112-23:12:54,995 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Source output name: (none)
201112-23:12:54,995 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Release Data: Off
201112-23:12:54,995 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Data Released: False
201112-23:12:54,995 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Global Release Data: Off
201112-23:12:54,995 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: PipelineMTime: 0
201112-23:12:54,995 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: UpdateMTime: 1930
201112-23:12:54,995 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: RealTimeStamp: 0 seconds
201112-23:12:54,995 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: LargestPossibleRegion:
201112-23:12:54,996 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Dimension: 3
201112-23:12:54,996 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Index: [0, 0, 0]
201112-23:12:54,996 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Size: [192, 256, 256]
201112-23:12:54,996 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: BufferedRegion:
201112-23:12:54,996 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Dimension: 3
201112-23:12:54,996 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Index: [0, 0, 0]
201112-23:12:54,996 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Size: [192, 256, 256]
201112-23:12:54,996 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: RequestedRegion:
201112-23:12:54,996 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Dimension: 3
201112-23:12:54,996 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Index: [0, 0, 0]
201112-23:12:54,996 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Size: [192, 256, 256]
201112-23:12:54,996 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Spacing: [0.999999, 1, 1]
201112-23:12:54,997 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Origin: [-109.238, 124.317, -144.958]
201112-23:12:54,997 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Direction:
201112-23:12:54,997 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:1 0 0
201112-23:12:54,997 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 -1 0
201112-23:12:54,997 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 0 1
201112-23:12:55,1 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:
201112-23:12:55,7 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: IndexToPointMatrix:
201112-23:12:55,7 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0.999999 0 0
201112-23:12:55,7 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 -1 0
201112-23:12:55,7 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 0 1
201112-23:12:55,7 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:
201112-23:12:55,7 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: PointToIndexMatrix:
201112-23:12:55,7 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:1 0 0
201112-23:12:55,8 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 -1 0
201112-23:12:55,8 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 0 1
201112-23:12:55,8 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:
201112-23:12:55,8 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Inverse Direction:
201112-23:12:55,8 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:1 0 0
201112-23:12:55,8 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 -1 0
201112-23:12:55,8 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:0 0 1
201112-23:12:55,8 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:
201112-23:12:55,8 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: PixelContainer:
201112-23:12:55,8 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: ImportImageContainer (0x555555c30560)
201112-23:12:55,8 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201112-23:12:55,8 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Reference Count: 1
201112-23:12:55,9 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Modified Time: 1927
201112-23:12:55,9 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Debug: Off
201112-23:12:55,9 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Object Name:
201112-23:12:55,9 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Observers:
201112-23:12:55,9 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: none
201112-23:12:55,9 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Pointer: 0x2aaabf37c010
201112-23:12:55,9 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Container manages memory: true
201112-23:12:55,9 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Size: 12582912
201112-23:12:55,9 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Capacity: 12582912
201112-23:12:55,9 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637:
201112-23:12:55,9 nipype.interface INFO:
stdout 2020-11-12T23:12:54.982637: Weighting = 1
201112-23:12:55,10 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Sampling strategy = regular
201112-23:12:55,10 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Number of bins = 32
201112-23:12:55,10 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Radius = 4
201112-23:12:55,10 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Sampling percentage = 0.25
201112-23:12:55,10 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Transform = Affine
201112-23:12:55,10 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Gradient step = 0.1
201112-23:12:55,10 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Update field sigma (voxel space) = 0
201112-23:12:55,10 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Total field sigma (voxel space) = 0
201112-23:12:55,10 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Update field time sigma = 0
201112-23:12:55,10 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Total field time sigma = 0
201112-23:12:55,10 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Number of time indices = 0
201112-23:12:55,10 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Number of time point samples = 0
201112-23:12:55,11 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:Stage 3 State
201112-23:12:55,11 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Image metric = CC
201112-23:12:55,11 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Fixed image = Image (0x555555c3f520)
201112-23:12:55,11 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: RTTI typeinfo: itk::Image<float, 3u>
201112-23:12:55,11 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Reference Count: 2
201112-23:12:55,11 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Modified Time: 2262
201112-23:12:55,11 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Debug: Off
201112-23:12:55,11 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Object Name:
201112-23:12:55,11 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Observers:
201112-23:12:55,11 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: none
201112-23:12:55,11 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Source: (none)
201112-23:12:55,11 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Source output name: (none)
201112-23:12:55,11 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Release Data: Off
201112-23:12:55,12 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Data Released: False
201112-23:12:55,12 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Global Release Data: Off
201112-23:12:55,12 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: PipelineMTime: 0
201112-23:12:55,12 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: UpdateMTime: 2095
201112-23:12:55,12 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: RealTimeStamp: 0 seconds
201112-23:12:55,12 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: LargestPossibleRegion:
201112-23:12:55,12 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Dimension: 3
201112-23:12:55,12 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Index: [0, 0, 0]
201112-23:12:55,12 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Size: [216, 256, 291]
201112-23:12:55,12 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: BufferedRegion:
201112-23:12:55,12 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Dimension: 3
201112-23:12:55,12 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Index: [0, 0, 0]
201112-23:12:55,12 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Size: [216, 256, 291]
201112-23:12:55,13 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: RequestedRegion:
201112-23:12:55,13 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Dimension: 3
201112-23:12:55,13 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Index: [0, 0, 0]
201112-23:12:55,13 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Size: [216, 256, 291]
201112-23:12:55,13 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Spacing: [1, 1, 1]
201112-23:12:55,13 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Origin: [0, 293, 0]
201112-23:12:55,13 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Direction:
201112-23:12:55,13 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:1 0 0
201112-23:12:55,13 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:0 -0 -1
201112-23:12:55,13 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:0 -1 -0
201112-23:12:55,13 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:
201112-23:12:55,13 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: IndexToPointMatrix:
201112-23:12:55,14 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:1 0 0
201112-23:12:55,14 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:0 0 -1
201112-23:12:55,14 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:0 -1 0
201112-23:12:55,14 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:
201112-23:12:55,14 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: PointToIndexMatrix:
201112-23:12:55,14 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:1 0 0
201112-23:12:55,14 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:0 0 -1
201112-23:12:55,14 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:0 -1 0
201112-23:12:55,14 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:
201112-23:12:55,14 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Inverse Direction:
201112-23:12:55,14 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:1 0 0
201112-23:12:55,14 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:0 0 -1
201112-23:12:55,14 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:0 -1 0
201112-23:12:55,15 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:
201112-23:12:55,15 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: PixelContainer:
201112-23:12:55,15 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: ImportImageContainer (0x555555c45d80)
201112-23:12:55,15 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201112-23:12:55,15 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Reference Count: 1
201112-23:12:55,15 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Modified Time: 2092
201112-23:12:55,15 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Debug: Off
201112-23:12:55,15 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Object Name:
201112-23:12:55,15 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Observers:
201112-23:12:55,15 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: none
201112-23:12:55,15 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Pointer: 0x2aaac237d010
201112-23:12:55,15 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Container manages memory: true
201112-23:12:55,15 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Size: 16091136
201112-23:12:55,16 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Capacity: 16091136
201112-23:12:55,16 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:
201112-23:12:55,16 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Moving image = Image (0x555555c3f8d0)
201112-23:12:55,16 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: RTTI typeinfo: itk::Image<float, 3u>
201112-23:12:55,16 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Reference Count: 2
201112-23:12:55,16 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Modified Time: 2263
201112-23:12:55,16 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Debug: Off
201112-23:12:55,16 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Object Name:
201112-23:12:55,16 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Observers:
201112-23:12:55,16 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: none
201112-23:12:55,16 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Source: (none)
201112-23:12:55,16 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Source output name: (none)
201112-23:12:55,16 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Release Data: Off
201112-23:12:55,17 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Data Released: False
201112-23:12:55,17 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Global Release Data: Off
201112-23:12:55,17 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: PipelineMTime: 0
201112-23:12:55,17 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: UpdateMTime: 2260
201112-23:12:55,27 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: RealTimeStamp: 0 seconds
201112-23:12:55,27 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: LargestPossibleRegion:
201112-23:12:55,27 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Dimension: 3
201112-23:12:55,27 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Index: [0, 0, 0]
201112-23:12:55,27 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Size: [192, 256, 256]
201112-23:12:55,27 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: BufferedRegion:
201112-23:12:55,27 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Dimension: 3
201112-23:12:55,27 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Index: [0, 0, 0]
201112-23:12:55,28 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Size: [192, 256, 256]
201112-23:12:55,28 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: RequestedRegion:
201112-23:12:55,28 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Dimension: 3
201112-23:12:55,28 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Index: [0, 0, 0]
201112-23:12:55,28 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Size: [192, 256, 256]
201112-23:12:55,28 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Spacing: [0.999999, 1, 1]
201112-23:12:55,28 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Origin: [-109.238, 124.317, -144.958]
201112-23:12:55,28 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Direction:
201112-23:12:55,28 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:1 0 0
201112-23:12:55,28 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:0 -1 0
201112-23:12:55,28 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:0 0 1
201112-23:12:55,28 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:
201112-23:12:55,28 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: IndexToPointMatrix:
201112-23:12:55,29 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:0.999999 0 0
201112-23:12:55,29 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:0 -1 0
201112-23:12:55,29 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:0 0 1
201112-23:12:55,29 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:
201112-23:12:55,29 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: PointToIndexMatrix:
201112-23:12:55,29 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:1 0 0
201112-23:12:55,29 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:0 -1 0
201112-23:12:55,29 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:0 0 1
201112-23:12:55,29 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:
201112-23:12:55,29 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Inverse Direction:
201112-23:12:55,29 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:1 0 0
201112-23:12:55,29 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:0 -1 0
201112-23:12:55,30 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:0 0 1
201112-23:12:55,30 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:
201112-23:12:55,30 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: PixelContainer:
201112-23:12:55,30 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: ImportImageContainer (0x555555c0f6f0)
201112-23:12:55,30 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201112-23:12:55,30 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Reference Count: 1
201112-23:12:55,30 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Modified Time: 2257
201112-23:12:55,30 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Debug: Off
201112-23:12:55,30 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Object Name:
201112-23:12:55,30 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Observers:
201112-23:12:55,30 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: none
201112-23:12:55,30 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Pointer: 0x2aaac60e0010
201112-23:12:55,30 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Container manages memory: true
201112-23:12:55,31 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Size: 12582912
201112-23:12:55,31 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Capacity: 12582912
201112-23:12:55,31 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:
201112-23:12:55,31 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Weighting = 0.5
201112-23:12:55,31 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Sampling strategy = none
201112-23:12:55,31 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Number of bins = 32
201112-23:12:55,31 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Radius = 4
201112-23:12:55,31 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Sampling percentage = 1
201112-23:12:55,31 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Transform = SyN
201112-23:12:55,31 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Gradient step = 0.1
201112-23:12:55,31 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Update field sigma (voxel space) = 3
201112-23:12:55,31 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Total field sigma (voxel space) = 0
201112-23:12:55,31 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Update field time sigma = 0
201112-23:12:55,32 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Total field time sigma = 0
201112-23:12:55,32 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Number of time indices = 0
201112-23:12:55,32 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: Number of time point samples = 0
201112-23:12:55,32 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:Registration using 3 total stages.
201112-23:12:55,32 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:
201112-23:12:55,32 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912:Stage 0
201112-23:12:55,32 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: iterations = 1000x500x250x100
201112-23:12:55,32 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: convergence threshold = 1e-08
201112-23:12:55,32 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: convergence window size = 10
201112-23:12:55,32 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: number of levels = 4
201112-23:12:55,32 nipype.interface INFO:
stdout 2020-11-12T23:12:55.009912: using the Mattes MI metric (number of bins = 32, weight = 1)
201112-23:12:57,710 nipype.interface INFO:
stdout 2020-11-12T23:12:57.710930: preprocessing: winsorizing the image intensities
201112-23:12:57,711 nipype.interface INFO:
stdout 2020-11-12T23:12:57.710930: preprocessing: histogram matching the images
201112-23:12:57,711 nipype.interface INFO:
stdout 2020-11-12T23:12:57.711393: Shrink factors (level 1 out of 4): [8, 8, 8]
201112-23:12:57,711 nipype.interface INFO:
stdout 2020-11-12T23:12:57.711544: Shrink factors (level 2 out of 4): [4, 4, 4]
201112-23:12:57,711 nipype.interface INFO:
stdout 2020-11-12T23:12:57.711682: Shrink factors (level 3 out of 4): [2, 2, 2]
201112-23:12:57,711 nipype.interface INFO:
stdout 2020-11-12T23:12:57.711817: Shrink factors (level 4 out of 4): [1, 1, 1]
201112-23:12:57,712 nipype.interface INFO:
stdout 2020-11-12T23:12:57.712001: smoothing sigmas per level: [4, 2, 1, 0]
201112-23:12:57,712 nipype.interface INFO:
stdout 2020-11-12T23:12:57.712145: regular sampling (percentage = 0.25)
201112-23:12:57,717 nipype.interface INFO:
stdout 2020-11-12T23:12:57.717899:
201112-23:12:57,718 nipype.interface INFO:
stdout 2020-11-12T23:12:57.718073:*** Running Euler3DTransform registration ***
201112-23:12:57,718 nipype.interface INFO:
stdout 2020-11-12T23:12:57.718217:
201112-23:13:09,775 nipype.interface INFO:
stdout 2020-11-12T23:13:09.775510:DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201112-23:13:09,775 nipype.interface INFO:
stdout 2020-11-12T23:13:09.775888: 2DIAGNOSTIC, 1, -9.384609460831e-01, inf, 1.2060e+01, 1.2060e+01,
201112-23:13:09,784 nipype.interface INFO:
stdout 2020-11-12T23:13:09.784420: 2DIAGNOSTIC, 2, -9.428040385246e-01, inf, 1.2068e+01, 8.3389e-03,
201112-23:13:09,792 nipype.interface INFO:
stdout 2020-11-12T23:13:09.792929: 2DIAGNOSTIC, 3, -9.488430619240e-01, inf, 1.2077e+01, 8.3170e-03,
201112-23:13:09,801 nipype.interface INFO:
stdout 2020-11-12T23:13:09.801504: 2DIAGNOSTIC, 4, -9.552840590477e-01, inf, 1.2085e+01, 8.3899e-03,
201112-23:13:09,810 nipype.interface INFO:
stdout 2020-11-12T23:13:09.810021: 2DIAGNOSTIC, 5, -9.604107737541e-01, inf, 1.2093e+01, 8.3339e-03,
201112-23:13:09,818 nipype.interface INFO:
stdout 2020-11-12T23:13:09.818537: 2DIAGNOSTIC, 6, -9.631156325340e-01, inf, 1.2102e+01, 8.3339e-03,
201112-23:13:09,827 nipype.interface INFO:
stdout 2020-11-12T23:13:09.827035: 2DIAGNOSTIC, 7, -9.655795097351e-01, inf, 1.2110e+01, 8.3151e-03,
201112-23:13:09,835 nipype.interface INFO:
stdout 2020-11-12T23:13:09.835536: 2DIAGNOSTIC, 8, -9.693877696991e-01, inf, 1.2118e+01, 8.3170e-03,
201112-23:13:09,844 nipype.interface INFO:
stdout 2020-11-12T23:13:09.844414: 2DIAGNOSTIC, 9, -9.759285449982e-01, inf, 1.2127e+01, 8.6761e-03,
201112-23:13:09,854 nipype.interface INFO:
stdout 2020-11-12T23:13:09.854902: 2DIAGNOSTIC, 10, -9.852743148804e-01, 2.826865995303e-03, 1.2137e+01, 1.0293e-02,
201112-23:13:09,868 nipype.interface INFO:
stdout 2020-11-12T23:13:09.868562: 2DIAGNOSTIC, 11, -9.885994791985e-01, 2.597572980449e-03, 1.2151e+01, 1.3461e-02,
201112-23:13:09,877 nipype.interface INFO:
stdout 2020-11-12T23:13:09.877213: 2DIAGNOSTIC, 12, -9.908120632172e-01, 2.336838748306e-03, 1.2159e+01, 8.4541e-03,
201112-23:13:09,887 nipype.interface INFO:
stdout 2020-11-12T23:13:09.887533: 2DIAGNOSTIC, 13, -9.925881624222e-01, 2.082116901875e-03, 1.2169e+01, 1.0131e-02,
201112-23:13:09,899 nipype.interface INFO:
stdout 2020-11-12T23:13:09.899669: 2DIAGNOSTIC, 14, -9.960206151009e-01, 1.878164825030e-03, 1.2181e+01, 1.1944e-02,
201112-23:13:09,910 nipype.interface INFO:
stdout 2020-11-12T23:13:09.909995: 2DIAGNOSTIC, 15, -9.980986714363e-01, 1.667151926085e-03, 1.2191e+01, 1.0136e-02,
201112-23:13:09,920 nipype.interface INFO:
stdout 2020-11-12T23:13:09.920348: 2DIAGNOSTIC, 16, -1.002756834030e+00, 1.464617322199e-03, 1.2202e+01, 1.0157e-02,
201112-23:13:09,930 nipype.interface INFO:
stdout 2020-11-12T23:13:09.930690: 2DIAGNOSTIC, 17, -1.003307104111e+00, 1.204044325277e-03, 1.2212e+01, 1.0138e-02,
201112-23:13:09,939 nipype.interface INFO:
stdout 2020-11-12T23:13:09.939339: 2DIAGNOSTIC, 18, -1.003430724144e+00, 9.259321377613e-04, 1.2220e+01, 8.4488e-03,
201112-23:13:09,949 nipype.interface INFO:
stdout 2020-11-12T23:13:09.949722: 2DIAGNOSTIC, 19, -1.003560781479e+00, 6.915210396983e-04, 1.2230e+01, 1.0187e-02,
201112-23:13:09,960 nipype.interface INFO:
stdout 2020-11-12T23:13:09.960033: 2DIAGNOSTIC, 20, -1.003689408302e+00, 5.531496717595e-04, 1.2240e+01, 1.0117e-02,
201112-23:13:09,969 nipype.interface INFO:
stdout 2020-11-12T23:13:09.969024: 2DIAGNOSTIC, 21, -1.003836035728e+00, 4.238356777932e-04, 1.2249e+01, 8.7969e-03,
201112-23:13:09,981 nipype.interface INFO:
stdout 2020-11-12T23:13:09.981035: 2DIAGNOSTIC, 22, -1.004683017731e+00, 3.073654370382e-04, 1.2261e+01, 1.1817e-02,
201112-23:13:09,989 nipype.interface INFO:
stdout 2020-11-12T23:13:09.989695: 2DIAGNOSTIC, 23, -1.004961013794e+00, 1.982056855923e-04, 1.2270e+01, 8.4629e-03,
201112-23:13:09,998 nipype.interface INFO:
stdout 2020-11-12T23:13:09.998417: 2DIAGNOSTIC, 24, -1.005023241043e+00, 1.220691920025e-04, 1.2278e+01, 8.5242e-03,
201112-23:13:10,12 nipype.interface INFO:
stdout 2020-11-12T23:13:10.011999: 2DIAGNOSTIC, 25, -1.005120873451e+00, 6.464710168075e-05, 1.2291e+01, 1.3386e-02,
201112-23:13:10,20 nipype.interface INFO:
stdout 2020-11-12T23:13:10.020646: 2DIAGNOSTIC, 26, -1.005172729492e+00, 5.785851681139e-05, 1.2300e+01, 8.4498e-03,
201112-23:13:10,29 nipype.interface INFO:
stdout 2020-11-12T23:13:10.029285: 2DIAGNOSTIC, 27, -1.005207896233e+00, 5.234348645899e-05, 1.2308e+01, 8.4460e-03,
201112-23:13:10,41 nipype.interface INFO:
stdout 2020-11-12T23:13:10.041228: 2DIAGNOSTIC, 28, -1.005291700363e+00, 4.447418905329e-05, 1.2320e+01, 1.1743e-02,
201112-23:13:10,49 nipype.interface INFO:
stdout 2020-11-12T23:13:10.049937: 2DIAGNOSTIC, 29, -1.005314707756e+00, 3.467092392384e-05, 1.2329e+01, 8.5139e-03,
201112-23:13:10,58 nipype.interface INFO:
stdout 2020-11-12T23:13:10.058585: 2DIAGNOSTIC, 30, -1.005348086357e+00, 2.400549055892e-05, 1.2337e+01, 8.4500e-03,
201112-23:13:10,72 nipype.interface INFO:
stdout 2020-11-12T23:13:10.072158: 2DIAGNOSTIC, 31, -1.005385994911e+00, 1.339124082733e-05, 1.2350e+01, 1.3381e-02,
201112-23:13:10,80 nipype.interface INFO:
stdout 2020-11-12T23:13:10.080807: 2DIAGNOSTIC, 32, -1.005419850349e+00, 1.012875509332e-05, 1.2359e+01, 8.4469e-03,
201112-23:13:10,91 nipype.interface INFO:
stdout 2020-11-12T23:13:10.091444: 2DIAGNOSTIC, 33, -1.005431175232e+00, 8.709026587894e-06, 1.2369e+01, 1.0442e-02,
201112-23:13:10,100 nipype.interface INFO:
stdout 2020-11-12T23:13:10.100206: 2DIAGNOSTIC, 34, -1.005441904068e+00, 7.242040737765e-06, 1.2378e+01, 8.5630e-03,
201112-23:13:10,112 nipype.interface INFO:
stdout 2020-11-12T23:13:10.112141: 2DIAGNOSTIC, 35, -1.005463123322e+00, 6.236111403268e-06, 1.2390e+01, 1.1744e-02,
201112-23:13:10,120 nipype.interface INFO:
stdout 2020-11-12T23:13:10.120783: 2DIAGNOSTIC, 36, -1.005487918854e+00, 5.386084012571e-06, 1.2398e+01, 8.4479e-03,
201112-23:13:10,131 nipype.interface INFO:
stdout 2020-11-12T23:13:10.131083: 2DIAGNOSTIC, 37, -1.005496621132e+00, 4.475238711166e-06, 1.2408e+01, 1.0107e-02,
201112-23:13:10,139 nipype.interface INFO:
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201112-23:13:20,3 nipype.interface INFO:
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201112-23:13:20,158 nipype.interface INFO:
stdout 2020-11-12T23:13:20.158562: 2DIAGNOSTIC, 1000, -1.005634069443e+00, 3.182680785585e-08, 2.2249e+01, 1.0102e-02,
201112-23:13:25,509 nipype.interface INFO:
stdout 2020-11-12T23:13:25.509163:DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201112-23:13:25,511 nipype.interface INFO:
stdout 2020-11-12T23:13:25.511348: 2DIAGNOSTIC, 1, -7.397124767303e-01, inf, 2.7602e+01, 5.3526e+00,
201112-23:13:25,584 nipype.interface INFO:
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stdout 2020-11-12T23:13:25.649715: 2DIAGNOSTIC, 3, -7.400180101395e-01, inf, 2.7740e+01, 6.4932e-02,
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stdout 2020-11-12T23:13:25.947726: 2DIAGNOSTIC, 7, -7.401511073112e-01, inf, 2.8037e+01, 6.4466e-02,
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stdout 2020-11-12T23:13:26.037910: 2DIAGNOSTIC, 8, -7.401790022850e-01, inf, 2.8127e+01, 8.9990e-02,
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stdout 2020-11-12T23:13:26.232959: 2DIAGNOSTIC, 11, -7.402232289314e-01, 2.160084659408e-05, 2.8322e+01, 6.4930e-02,
201112-23:13:26,310 nipype.interface INFO:
stdout 2020-11-12T23:13:26.310534: 2DIAGNOSTIC, 12, -7.402406930923e-01, 1.811272886698e-05, 2.8399e+01, 7.7368e-02,
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stdout 2020-11-12T23:13:26.730612: 2DIAGNOSTIC, 17, -7.402728199959e-01, 7.055989044602e-06, 2.8818e+01, 6.4850e-02,
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stdout 2020-11-12T23:13:26.796124: 2DIAGNOSTIC, 18, -7.402783632278e-01, 5.794084700028e-06, 2.8883e+01, 6.5304e-02,
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201112-23:13:26,938 nipype.interface INFO:
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201112-23:13:27,415 nipype.interface INFO:
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201112-23:13:31,811 nipype.interface INFO:
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201112-23:13:31,812 nipype.interface INFO:
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201112-23:13:32,385 nipype.interface INFO:
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201112-23:13:32,967 nipype.interface INFO:
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201112-23:13:33,539 nipype.interface INFO:
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201112-23:13:34,120 nipype.interface INFO:
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201112-23:13:35,46 nipype.interface INFO:
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201112-23:13:43,826 nipype.interface INFO:
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201112-23:13:46,250 nipype.interface INFO:
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201112-23:16:32,387 nipype.interface INFO:
stdout 2020-11-12T23:16:32.387093:DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
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stdout 2020-11-12T23:16:32.387471: 2DIAGNOSTIC, 1, -5.088785290718e-01, inf, 2.1437e+02, 7.1275e+00,
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stdout 2020-11-12T23:16:36.196421: 2DIAGNOSTIC, 2, -5.094766020775e-01, inf, 2.1818e+02, 3.8087e+00,
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stdout 2020-11-12T23:17:20.532620: 2DIAGNOSTIC, 11, -5.097716450691e-01, 1.788291410776e-05, 2.6251e+02, 4.5189e+00,
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stdout 2020-11-12T23:17:25.058728: 2DIAGNOSTIC, 12, -5.097715258598e-01, 2.686399511731e-06, 2.6703e+02, 4.5257e+00,
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stdout 2020-11-12T23:17:29.590894: 2DIAGNOSTIC, 13, -5.097709298134e-01, 2.417924406473e-06, 2.7157e+02, 4.5318e+00,
201112-23:17:34,118 nipype.interface INFO:
stdout 2020-11-12T23:17:34.118518: 2DIAGNOSTIC, 14, -5.097705721855e-01, 2.228309313068e-06, 2.7609e+02, 4.5273e+00,
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stdout 2020-11-12T23:17:41.526135: 2DIAGNOSTIC, 15, -5.097711682320e-01, 2.069272113658e-06, 2.8350e+02, 7.4072e+00,
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stdout 2020-11-12T23:17:55.808139: 2DIAGNOSTIC, 18, -5.097712874413e-01, 1.717137820378e-06, 2.9778e+02, 4.5223e+00,
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201112-23:20:00,73 nipype.interface INFO:
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201112-23:20:04,636 nipype.interface INFO:
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201112-23:20:13,700 nipype.interface INFO:
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201112-23:20:22,740 nipype.interface INFO:
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201112-23:20:31,785 nipype.interface INFO:
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201112-23:20:36,303 nipype.interface INFO:
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201112-23:20:40,826 nipype.interface INFO:
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201112-23:20:49,864 nipype.interface INFO:
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201112-23:20:54,380 nipype.interface INFO:
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201112-23:21:03,428 nipype.interface INFO:
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stdout 2020-11-12T23:21:57.680719: 2DIAGNOSTIC, 71, -5.097709298134e-01, 4.480416748720e-07, 5.3963e+02, 4.5245e+00,
201112-23:22:02,213 nipype.interface INFO:
stdout 2020-11-12T23:22:02.213141: 2DIAGNOSTIC, 72, -5.097709298134e-01, 4.418186847488e-07, 5.4416e+02, 4.5320e+00,
201112-23:22:06,757 nipype.interface INFO:
stdout 2020-11-12T23:22:06.757749: 2DIAGNOSTIC, 73, -5.097709298134e-01, 4.357661680388e-07, 5.4870e+02, 4.5442e+00,
201112-23:22:11,277 nipype.interface INFO:
stdout 2020-11-12T23:22:11.277569: 2DIAGNOSTIC, 74, -5.097709298134e-01, 4.298772466882e-07, 5.5322e+02, 4.5194e+00,
201112-23:22:15,799 nipype.interface INFO:
stdout 2020-11-12T23:22:15.798967: 2DIAGNOSTIC, 75, -5.097709298134e-01, 4.241453837039e-07, 5.5774e+02, 4.5210e+00,
201112-23:22:20,314 nipype.interface INFO:
stdout 2020-11-12T23:22:20.314782: 2DIAGNOSTIC, 76, -5.097709298134e-01, 4.185643547316e-07, 5.6226e+02, 4.5154e+00,
201112-23:22:24,840 nipype.interface INFO:
stdout 2020-11-12T23:22:24.840221: 2DIAGNOSTIC, 77, -5.097709298134e-01, 4.131283048991e-07, 5.6678e+02, 4.5250e+00,
201112-23:22:29,359 nipype.interface INFO:
stdout 2020-11-12T23:22:29.359805: 2DIAGNOSTIC, 78, -5.097709298134e-01, 4.078316067080e-07, 5.7130e+02, 4.5174e+00,
201112-23:22:33,888 nipype.interface INFO:
stdout 2020-11-12T23:22:33.887979: 2DIAGNOSTIC, 79, -5.097709298134e-01, 4.026690305636e-07, 5.7583e+02, 4.5277e+00,
201112-23:22:38,403 nipype.interface INFO:
stdout 2020-11-12T23:22:38.403569: 2DIAGNOSTIC, 80, -5.097709298134e-01, 3.976355458235e-07, 5.8034e+02, 4.5152e+00,
201112-23:22:42,927 nipype.interface INFO:
stdout 2020-11-12T23:22:42.927739: 2DIAGNOSTIC, 81, -5.097709298134e-01, 3.927263207970e-07, 5.8487e+02, 4.5238e+00,
201112-23:22:47,442 nipype.interface INFO:
stdout 2020-11-12T23:22:47.442836: 2DIAGNOSTIC, 82, -5.097709298134e-01, 3.879368364323e-07, 5.8938e+02, 4.5147e+00,
201112-23:22:51,968 nipype.interface INFO:
stdout 2020-11-12T23:22:51.968859: 2DIAGNOSTIC, 83, -5.097709298134e-01, 3.832627726297e-07, 5.9391e+02, 4.5256e+00,
201112-23:22:56,488 nipype.interface INFO:
stdout 2020-11-12T23:22:56.488724: 2DIAGNOSTIC, 84, -5.097709298134e-01, 3.786999798194e-07, 5.9843e+02, 4.5194e+00,
201112-23:23:01,20 nipype.interface INFO:
stdout 2020-11-12T23:23:01.020345: 2DIAGNOSTIC, 85, -5.097709298134e-01, 3.742445642274e-07, 6.0296e+02, 4.5310e+00,
201112-23:23:05,533 nipype.interface INFO:
stdout 2020-11-12T23:23:05.533733: 2DIAGNOSTIC, 86, -5.097709298134e-01, 3.698927741880e-07, 6.0747e+02, 4.5130e+00,
201112-23:23:10,58 nipype.interface INFO:
stdout 2020-11-12T23:23:10.058393: 2DIAGNOSTIC, 87, -5.097709298134e-01, 3.656410285657e-07, 6.1200e+02, 4.5242e+00,
201112-23:23:14,583 nipype.interface INFO:
stdout 2020-11-12T23:23:14.583274: 2DIAGNOSTIC, 88, -5.097709298134e-01, 3.614858883338e-07, 6.1652e+02, 4.5245e+00,
201112-23:23:19,95 nipype.interface INFO:
stdout 2020-11-12T23:23:19.095420: 2DIAGNOSTIC, 89, -5.097709298134e-01, 3.574241418391e-07, 6.2103e+02, 4.5118e+00,
201112-23:23:23,617 nipype.interface INFO:
stdout 2020-11-12T23:23:23.617488: 2DIAGNOSTIC, 90, -5.097709298134e-01, 3.534526626936e-07, 6.2555e+02, 4.5217e+00,
201112-23:23:28,133 nipype.interface INFO:
stdout 2020-11-12T23:23:28.133455: 2DIAGNOSTIC, 91, -5.097709298134e-01, 3.495684666177e-07, 6.3007e+02, 4.5156e+00,
201112-23:23:32,665 nipype.interface INFO:
stdout 2020-11-12T23:23:32.665019: 2DIAGNOSTIC, 92, -5.097709298134e-01, 3.457687114405e-07, 6.3460e+02, 4.5311e+00,
201112-23:23:37,179 nipype.interface INFO:
stdout 2020-11-12T23:23:37.179006: 2DIAGNOSTIC, 93, -5.097709298134e-01, 3.420506970997e-07, 6.3911e+02, 4.5134e+00,
201112-23:23:41,704 nipype.interface INFO:
stdout 2020-11-12T23:23:41.704597: 2DIAGNOSTIC, 94, -5.097709298134e-01, 3.384117519545e-07, 6.4364e+02, 4.5252e+00,
201112-23:23:46,218 nipype.interface INFO:
stdout 2020-11-12T23:23:46.218384: 2DIAGNOSTIC, 95, -5.097709298134e-01, 3.348494317379e-07, 6.4815e+02, 4.5134e+00,
201112-23:23:50,739 nipype.interface INFO:
stdout 2020-11-12T23:23:50.739744: 2DIAGNOSTIC, 96, -5.097709298134e-01, 3.313613490263e-07, 6.5267e+02, 4.5210e+00,
201112-23:23:55,255 nipype.interface INFO:
stdout 2020-11-12T23:23:55.255644: 2DIAGNOSTIC, 97, -5.097709298134e-01, 3.279451732396e-07, 6.5719e+02, 4.5155e+00,
201112-23:23:59,776 nipype.interface INFO:
stdout 2020-11-12T23:23:59.776656: 2DIAGNOSTIC, 98, -5.097709298134e-01, 3.245987159062e-07, 6.6171e+02, 4.5206e+00,
201112-23:24:04,324 nipype.interface INFO:
stdout 2020-11-12T23:24:04.324592: 2DIAGNOSTIC, 99, -5.097709298134e-01, 3.213198453977e-07, 6.6626e+02, 4.5475e+00,
201112-23:24:08,871 nipype.interface INFO:
stdout 2020-11-12T23:24:08.871255: 2DIAGNOSTIC, 100, -5.097709298134e-01, 3.181065721947e-07, 6.7080e+02, 4.5461e+00,
201112-23:24:08,871 nipype.interface INFO:
stdout 2020-11-12T23:24:08.871726: Elapsed time (stage 0): 6.7389e+02
201112-23:24:08,871 nipype.interface INFO:
stdout 2020-11-12T23:24:08.871887:
201112-23:24:08,876 nipype.interface INFO:
stdout 2020-11-12T23:24:08.876920:
201112-23:24:08,877 nipype.interface INFO:
stdout 2020-11-12T23:24:08.877089:Stage 1
201112-23:24:08,877 nipype.interface INFO:
stdout 2020-11-12T23:24:08.877240: iterations = 1000x500x250x100
201112-23:24:08,877 nipype.interface INFO:
stdout 2020-11-12T23:24:08.877394: convergence threshold = 1.0000e-08
201112-23:24:08,877 nipype.interface INFO:
stdout 2020-11-12T23:24:08.877576: convergence window size = 10
201112-23:24:08,877 nipype.interface INFO:
stdout 2020-11-12T23:24:08.877733: number of levels = 4
201112-23:24:08,877 nipype.interface INFO:
stdout 2020-11-12T23:24:08.877910: using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00)
201112-23:24:11,568 nipype.interface INFO:
stdout 2020-11-12T23:24:11.568523: preprocessing: winsorizing the image intensities
201112-23:24:11,568 nipype.interface INFO:
stdout 2020-11-12T23:24:11.568523: preprocessing: histogram matching the images
201112-23:24:11,568 nipype.interface INFO:
stdout 2020-11-12T23:24:11.568916: Shrink factors (level 1 out of 4): [8, 8, 8]
201112-23:24:11,569 nipype.interface INFO:
stdout 2020-11-12T23:24:11.569064: Shrink factors (level 2 out of 4): [4, 4, 4]
201112-23:24:11,569 nipype.interface INFO:
stdout 2020-11-12T23:24:11.569204: Shrink factors (level 3 out of 4): [2, 2, 2]
201112-23:24:11,569 nipype.interface INFO:
stdout 2020-11-12T23:24:11.569574: Shrink factors (level 4 out of 4): [1, 1, 1]
201112-23:24:11,569 nipype.interface INFO:
stdout 2020-11-12T23:24:11.569736: smoothing sigmas per level: [4, 2, 1, 0]
201112-23:24:11,569 nipype.interface INFO:
stdout 2020-11-12T23:24:11.569896: regular sampling (percentage = 2.5000e-01)
201112-23:24:11,573 nipype.interface INFO:
stdout 2020-11-12T23:24:11.573574:
201112-23:24:11,573 nipype.interface INFO:
stdout 2020-11-12T23:24:11.573765:*** Running AffineTransform registration ***
201112-23:24:11,573 nipype.interface INFO:
stdout 2020-11-12T23:24:11.573907:
201112-23:24:23,661 nipype.interface INFO:
stdout 2020-11-12T23:24:23.661625:DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201112-23:24:23,662 nipype.interface INFO:
stdout 2020-11-12T23:24:23.661998: 2DIAGNOSTIC, 1, -1.010586619377e+00, inf, 1.2090e+01, 1.2090e+01,
201112-23:24:23,671 nipype.interface INFO:
stdout 2020-11-12T23:24:23.671920: 2DIAGNOSTIC, 2, -1.012953519821e+00, inf, 1.2100e+01, 9.7401e-03,
201112-23:24:23,681 nipype.interface INFO:
stdout 2020-11-12T23:24:23.681837: 2DIAGNOSTIC, 3, -1.016030192375e+00, inf, 1.2110e+01, 9.7339e-03,
201112-23:24:23,691 nipype.interface INFO:
stdout 2020-11-12T23:24:23.691778: 2DIAGNOSTIC, 4, -1.019570827484e+00, inf, 1.2120e+01, 9.7601e-03,
201112-23:24:23,702 nipype.interface INFO:
stdout 2020-11-12T23:24:23.701983: 2DIAGNOSTIC, 5, -1.023035883904e+00, inf, 1.2130e+01, 1.0023e-02,
201112-23:24:23,711 nipype.interface INFO:
stdout 2020-11-12T23:24:23.711901: 2DIAGNOSTIC, 6, -1.026284098625e+00, inf, 1.2139e+01, 9.7339e-03,
201112-23:24:23,723 nipype.interface INFO:
stdout 2020-11-12T23:24:23.723528: 2DIAGNOSTIC, 7, -1.030304789543e+00, inf, 1.2151e+01, 1.1452e-02,
201112-23:24:23,735 nipype.interface INFO:
stdout 2020-11-12T23:24:23.735169: 2DIAGNOSTIC, 8, -1.034523367882e+00, inf, 1.2162e+01, 1.1465e-02,
201112-23:24:23,746 nipype.interface INFO:
stdout 2020-11-12T23:24:23.746784: 2DIAGNOSTIC, 9, -1.034926533699e+00, inf, 1.2174e+01, 1.1439e-02,
201112-23:24:23,758 nipype.interface INFO:
stdout 2020-11-12T23:24:23.758593: 2DIAGNOSTIC, 10, -1.035148143768e+00, 1.731460448354e-03, 1.2185e+01, 1.1632e-02,
201112-23:24:23,770 nipype.interface INFO:
stdout 2020-11-12T23:24:23.770365: 2DIAGNOSTIC, 11, -1.035503506660e+00, 1.415527425706e-03, 1.2197e+01, 1.1585e-02,
201112-23:24:23,780 nipype.interface INFO:
stdout 2020-11-12T23:24:23.780430: 2DIAGNOSTIC, 12, -1.035756468773e+00, 1.084632822312e-03, 1.2207e+01, 9.8701e-03,
201112-23:24:23,792 nipype.interface INFO:
stdout 2020-11-12T23:24:23.792191: 2DIAGNOSTIC, 13, -1.035882592201e+00, 7.736366242170e-04, 1.2218e+01, 1.1573e-02,
201112-23:24:23,805 nipype.interface INFO:
stdout 2020-11-12T23:24:23.805649: 2DIAGNOSTIC, 14, -1.036084771156e+00, 5.111049977131e-04, 1.2232e+01, 1.3269e-02,
201112-23:24:23,815 nipype.interface INFO:
stdout 2020-11-12T23:24:23.815878: 2DIAGNOSTIC, 15, -1.036117792130e+00, 3.022032906301e-04, 1.2242e+01, 1.0036e-02,
201112-23:24:23,826 nipype.interface INFO:
stdout 2020-11-12T23:24:23.826427: 2DIAGNOSTIC, 16, -1.036180138588e+00, 1.481935032643e-04, 1.2252e+01, 1.0363e-02,
201112-23:24:23,840 nipype.interface INFO:
stdout 2020-11-12T23:24:23.840365: 2DIAGNOSTIC, 17, -1.036234021187e+00, 6.327040318865e-05, 1.2266e+01, 1.3748e-02,
201112-23:24:23,852 nipype.interface INFO:
stdout 2020-11-12T23:24:23.852195: 2DIAGNOSTIC, 18, -1.036284923553e+00, 4.754549445352e-05, 1.2277e+01, 1.1635e-02,
201112-23:24:23,865 nipype.interface INFO:
stdout 2020-11-12T23:24:23.865698: 2DIAGNOSTIC, 19, -1.036330699921e+00, 3.574174115784e-05, 1.2291e+01, 1.3315e-02,
201112-23:24:23,877 nipype.interface INFO:
stdout 2020-11-12T23:24:23.877472: 2DIAGNOSTIC, 20, -1.036337852478e+00, 2.502811912564e-05, 1.2302e+01, 1.1586e-02,
201112-23:24:23,889 nipype.interface INFO:
stdout 2020-11-12T23:24:23.889230: 2DIAGNOSTIC, 21, -1.036343693733e+00, 1.786788197933e-05, 1.2314e+01, 1.1572e-02,
201112-23:24:23,901 nipype.interface INFO:
stdout 2020-11-12T23:24:23.900984: 2DIAGNOSTIC, 22, -1.036342740059e+00, 1.297844573855e-05, 1.2325e+01, 1.1569e-02,
201112-23:24:23,912 nipype.interface INFO:
stdout 2020-11-12T23:24:23.912755: 2DIAGNOSTIC, 23, -1.036342501640e+00, 8.882377187547e-06, 1.2337e+01, 1.1583e-02,
201112-23:24:23,924 nipype.interface INFO:
stdout 2020-11-12T23:24:23.924512: 2DIAGNOSTIC, 24, -1.036343097687e+00, 6.753264187864e-06, 1.2349e+01, 1.1570e-02,
201112-23:24:23,937 nipype.interface INFO:
stdout 2020-11-12T23:24:23.937964: 2DIAGNOSTIC, 25, -1.036343693733e+00, 4.649589754990e-06, 1.2362e+01, 1.3267e-02,
201112-23:24:23,950 nipype.interface INFO:
stdout 2020-11-12T23:24:23.949981: 2DIAGNOSTIC, 26, -1.036343574524e+00, 3.047440941373e-06, 1.2374e+01, 1.1830e-02,
201112-23:24:23,965 nipype.interface INFO:
stdout 2020-11-12T23:24:23.965134: 2DIAGNOSTIC, 27, -1.036344170570e+00, 1.941115442605e-06, 1.2389e+01, 1.4963e-02,
201112-23:24:23,976 nipype.interface INFO:
stdout 2020-11-12T23:24:23.976893: 2DIAGNOSTIC, 28, -1.036344766617e+00, 1.338063839285e-06, 1.2400e+01, 1.1572e-02,
201112-23:24:23,986 nipype.interface INFO:
stdout 2020-11-12T23:24:23.986954: 2DIAGNOSTIC, 29, -1.036344408989e+00, 1.187779844258e-06, 1.2410e+01, 9.8710e-03,
201112-23:24:23,998 nipype.interface INFO:
stdout 2020-11-12T23:24:23.998723: 2DIAGNOSTIC, 30, -1.036344051361e+00, 1.100210852201e-06, 1.2422e+01, 1.1579e-02,
201112-23:24:24,8 nipype.interface INFO:
stdout 2020-11-12T23:24:24.008783: 2DIAGNOSTIC, 31, -1.036344528198e+00, 1.071464907909e-06, 1.2431e+01, 9.8681e-03,
201112-23:24:24,20 nipype.interface INFO:
stdout 2020-11-12T23:24:24.020543: 2DIAGNOSTIC, 32, -1.036344170570e+00, 1.029217855830e-06, 1.2443e+01, 1.1573e-02,
201112-23:24:24,35 nipype.interface INFO:
stdout 2020-11-12T23:24:24.035686: 2DIAGNOSTIC, 33, -1.036344528198e+00, 9.874451052383e-07, 1.2458e+01, 1.4956e-02,
201112-23:24:24,49 nipype.interface INFO:
stdout 2020-11-12T23:24:24.049133: 2DIAGNOSTIC, 34, -1.036344766617e+00, 9.529060776003e-07, 1.2471e+01, 1.3260e-02,
201112-23:24:24,62 nipype.interface INFO:
stdout 2020-11-12T23:24:24.062633: 2DIAGNOSTIC, 35, -1.036345005035e+00, 9.257115607397e-07, 1.2485e+01, 1.3312e-02,
201112-23:24:24,74 nipype.interface INFO:
stdout 2020-11-12T23:24:24.074652: 2DIAGNOSTIC, 36, -1.036344528198e+00, 8.940212978814e-07, 1.2496e+01, 1.1831e-02,
201112-23:24:24,86 nipype.interface INFO:
stdout 2020-11-12T23:24:24.086413: 2DIAGNOSTIC, 37, -1.036344289780e+00, 8.659663990329e-07, 1.2508e+01, 1.1566e-02,
201112-23:24:24,101 nipype.interface INFO:
stdout 2020-11-12T23:24:24.101558: 2DIAGNOSTIC, 38, -1.036344528198e+00, 8.451974622403e-07, 1.2523e+01, 1.4957e-02,
201112-23:24:24,113 nipype.interface INFO:
stdout 2020-11-12T23:24:24.113320: 2DIAGNOSTIC, 39, -1.036344528198e+00, 8.223569807342e-07, 1.2535e+01, 1.1575e-02,
201112-23:24:24,125 nipype.interface INFO:
stdout 2020-11-12T23:24:24.125079: 2DIAGNOSTIC, 40, -1.036344408989e+00, 7.968674822223e-07, 1.2546e+01, 1.1565e-02,
201112-23:24:24,136 nipype.interface INFO:
stdout 2020-11-12T23:24:24.136860: 2DIAGNOSTIC, 41, -1.036344289780e+00, 7.753217232676e-07, 1.2558e+01, 1.1595e-02,
201112-23:24:24,150 nipype.interface INFO:
stdout 2020-11-12T23:24:24.150336: 2DIAGNOSTIC, 42, -1.036344170570e+00, 7.519701625824e-07, 1.2571e+01, 1.3287e-02,
201112-23:24:24,163 nipype.interface INFO:
stdout 2020-11-12T23:24:24.163788: 2DIAGNOSTIC, 43, -1.036344170570e+00, 7.326214586101e-07, 1.2584e+01, 1.3259e-02,
201112-23:24:24,175 nipype.interface INFO:
stdout 2020-11-12T23:24:24.175564: 2DIAGNOSTIC, 44, -1.036344051361e+00, 7.156510832829e-07, 1.2596e+01, 1.1573e-02,
201112-23:24:24,187 nipype.interface INFO:
stdout 2020-11-12T23:24:24.187375: 2DIAGNOSTIC, 45, -1.036343932152e+00, 7.011641400823e-07, 1.2607e+01, 1.1606e-02,
201112-23:24:24,199 nipype.interface INFO:
stdout 2020-11-12T23:24:24.199396: 2DIAGNOSTIC, 46, -1.036343932152e+00, 6.852719138806e-07, 1.2619e+01, 1.1818e-02,
201112-23:24:24,211 nipype.interface INFO:
stdout 2020-11-12T23:24:24.211189: 2DIAGNOSTIC, 47, -1.036343932152e+00, 6.693753675791e-07, 1.2631e+01, 1.1605e-02,
201112-23:24:24,222 nipype.interface INFO:
stdout 2020-11-12T23:24:24.222949: 2DIAGNOSTIC, 48, -1.036344051361e+00, 6.570413120244e-07, 1.2642e+01, 1.1568e-02,
201112-23:24:24,234 nipype.interface INFO:
stdout 2020-11-12T23:24:24.234714: 2DIAGNOSTIC, 49, -1.036344170570e+00, 6.465755291174e-07, 1.2654e+01, 1.1578e-02,
201112-23:24:24,246 nipype.interface INFO:
stdout 2020-11-12T23:24:24.246469: 2DIAGNOSTIC, 50, -1.036344170570e+00, 6.362881777022e-07, 1.2666e+01, 1.1571e-02,
201112-23:24:24,258 nipype.interface INFO:
stdout 2020-11-12T23:24:24.258235: 2DIAGNOSTIC, 51, -1.036344289780e+00, 6.265701131269e-07, 1.2677e+01, 1.1577e-02,
201112-23:24:24,270 nipype.interface INFO:
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201112-23:24:24,281 nipype.interface INFO:
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201112-23:24:24,293 nipype.interface INFO:
stdout 2020-11-12T23:24:24.293567: 2DIAGNOSTIC, 54, -1.036344051361e+00, 5.924973720539e-07, 1.2712e+01, 1.1583e-02,
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stdout 2020-11-12T23:24:32.201456: 2DIAGNOSTIC, 719, -1.036344647408e+00, 4.424919808343e-08, 2.0492e+01, 1.2087e-02,
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stdout 2020-11-12T23:24:32.213463: 2DIAGNOSTIC, 720, -1.036344647408e+00, 4.418772903136e-08, 2.0504e+01, 1.1813e-02,
201112-23:24:32,225 nipype.interface INFO:
stdout 2020-11-12T23:24:32.225220: 2DIAGNOSTIC, 721, -1.036344647408e+00, 4.412643406226e-08, 2.0516e+01, 1.1568e-02,
201112-23:24:32,237 nipype.interface INFO:
stdout 2020-11-12T23:24:32.236981: 2DIAGNOSTIC, 722, -1.036344647408e+00, 4.406530607071e-08, 2.0527e+01, 1.1576e-02,
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stdout 2020-11-12T23:24:32.248740: 2DIAGNOSTIC, 723, -1.036344647408e+00, 4.400434860941e-08, 2.0539e+01, 1.1575e-02,
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stdout 2020-11-12T23:24:32.272298: 2DIAGNOSTIC, 725, -1.036344647408e+00, 4.388293817215e-08, 2.0562e+01, 1.1616e-02,
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stdout 2020-11-12T23:24:32.295814: 2DIAGNOSTIC, 727, -1.036344647408e+00, 4.376219564506e-08, 2.0585e+01, 1.1570e-02,
201112-23:24:32,307 nipype.interface INFO:
stdout 2020-11-12T23:24:32.307573: 2DIAGNOSTIC, 728, -1.036344647408e+00, 4.370207307147e-08, 2.0597e+01, 1.1576e-02,
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stdout 2020-11-12T23:24:32.319581: 2DIAGNOSTIC, 729, -1.036344647408e+00, 4.364211392271e-08, 2.0609e+01, 1.1823e-02,
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stdout 2020-11-12T23:24:32.331349: 2DIAGNOSTIC, 730, -1.036344647408e+00, 4.358232175150e-08, 2.0620e+01, 1.1575e-02,
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stdout 2020-11-12T23:24:32.343110: 2DIAGNOSTIC, 731, -1.036344647408e+00, 4.352268945240e-08, 2.0632e+01, 1.1571e-02,
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stdout 2020-11-12T23:24:32.354871: 2DIAGNOSTIC, 732, -1.036344647408e+00, 4.346322413085e-08, 2.0643e+01, 1.1576e-02,
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stdout 2020-11-12T23:24:32.366629: 2DIAGNOSTIC, 733, -1.036344647408e+00, 4.340391868141e-08, 2.0655e+01, 1.1574e-02,
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stdout 2020-11-12T23:24:32.378389: 2DIAGNOSTIC, 734, -1.036344647408e+00, 4.334477665680e-08, 2.0666e+01, 1.1572e-02,
201112-23:24:32,390 nipype.interface INFO:
stdout 2020-11-12T23:24:32.390144: 2DIAGNOSTIC, 735, -1.036344647408e+00, 4.328579450430e-08, 2.0678e+01, 1.1570e-02,
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stdout 2020-11-12T23:24:32.401896: 2DIAGNOSTIC, 736, -1.036344647408e+00, 4.322697222392e-08, 2.0690e+01, 1.1567e-02,
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stdout 2020-11-12T23:24:32.413654: 2DIAGNOSTIC, 737, -1.036344647408e+00, 4.316830981566e-08, 2.0701e+01, 1.1575e-02,
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stdout 2020-11-12T23:24:32.425409: 2DIAGNOSTIC, 738, -1.036344647408e+00, 4.310980727951e-08, 2.0713e+01, 1.1568e-02,
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stdout 2020-11-12T23:24:32.437159: 2DIAGNOSTIC, 739, -1.036344647408e+00, 4.305146106276e-08, 2.0724e+01, 1.1566e-02,
201112-23:24:32,449 nipype.interface INFO:
stdout 2020-11-12T23:24:32.449186: 2DIAGNOSTIC, 740, -1.036344647408e+00, 4.299327471813e-08, 2.0736e+01, 1.1843e-02,
201112-23:24:32,460 nipype.interface INFO:
stdout 2020-11-12T23:24:32.460960: 2DIAGNOSTIC, 741, -1.036344647408e+00, 4.293524469290e-08, 2.0748e+01, 1.1582e-02,
201112-23:24:32,472 nipype.interface INFO:
stdout 2020-11-12T23:24:32.472722: 2DIAGNOSTIC, 742, -1.036344647408e+00, 4.287737098707e-08, 2.0759e+01, 1.1577e-02,
201112-23:24:32,484 nipype.interface INFO:
stdout 2020-11-12T23:24:32.484499: 2DIAGNOSTIC, 743, -1.036344647408e+00, 4.281965360065e-08, 2.0771e+01, 1.1595e-02,
201112-23:24:32,496 nipype.interface INFO:
stdout 2020-11-12T23:24:32.496269: 2DIAGNOSTIC, 744, -1.036344647408e+00, 4.276209253362e-08, 2.0782e+01, 1.1586e-02,
201112-23:24:32,508 nipype.interface INFO:
stdout 2020-11-12T23:24:32.508044: 2DIAGNOSTIC, 745, -1.036344647408e+00, 4.270468423329e-08, 2.0794e+01, 1.1576e-02,
201112-23:24:32,519 nipype.interface INFO:
stdout 2020-11-12T23:24:32.519801: 2DIAGNOSTIC, 746, -1.036344647408e+00, 4.264742869964e-08, 2.0806e+01, 1.1573e-02,
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stdout 2020-11-12T23:24:32.531577: 2DIAGNOSTIC, 747, -1.036344647408e+00, 4.259032948539e-08, 2.0817e+01, 1.1590e-02,
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stdout 2020-11-12T23:24:32.543353: 2DIAGNOSTIC, 748, -1.036344647408e+00, 4.253338303783e-08, 2.0829e+01, 1.1588e-02,
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stdout 2020-11-12T23:24:32.560823: 2DIAGNOSTIC, 749, -1.036344647408e+00, 4.247658580425e-08, 2.0846e+01, 1.7277e-02,
201112-23:24:32,572 nipype.interface INFO:
stdout 2020-11-12T23:24:32.572936: 2DIAGNOSTIC, 750, -1.036344647408e+00, 4.241994133736e-08, 2.0858e+01, 1.1919e-02,
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stdout 2020-11-12T23:24:32.584713: 2DIAGNOSTIC, 751, -1.036344647408e+00, 4.236344608444e-08, 2.0870e+01, 1.1586e-02,
201112-23:24:32,596 nipype.interface INFO:
stdout 2020-11-12T23:24:32.596475: 2DIAGNOSTIC, 752, -1.036344647408e+00, 4.230710359820e-08, 2.0881e+01, 1.1575e-02,
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stdout 2020-11-12T23:24:32.608237: 2DIAGNOSTIC, 753, -1.036344647408e+00, 4.225091032595e-08, 2.0893e+01, 1.1578e-02,
201112-23:24:32,620 nipype.interface INFO:
stdout 2020-11-12T23:24:32.619996: 2DIAGNOSTIC, 754, -1.036344647408e+00, 4.219486626766e-08, 2.0904e+01, 1.1570e-02,
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stdout 2020-11-12T23:24:32.631753: 2DIAGNOSTIC, 755, -1.036344647408e+00, 4.213897142336e-08, 2.0916e+01, 1.1572e-02,
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stdout 2020-11-12T23:24:32.643509: 2DIAGNOSTIC, 756, -1.036344647408e+00, 4.208322224031e-08, 2.0927e+01, 1.1571e-02,
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stdout 2020-11-12T23:24:32.655266: 2DIAGNOSTIC, 757, -1.036344647408e+00, 4.202762227123e-08, 2.0939e+01, 1.1572e-02,
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stdout 2020-11-12T23:24:32.667083: 2DIAGNOSTIC, 758, -1.036344647408e+00, 4.197216796342e-08, 2.0951e+01, 1.1618e-02,
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stdout 2020-11-12T23:24:32.678843: 2DIAGNOSTIC, 759, -1.036344647408e+00, 4.191685931687e-08, 2.0962e+01, 1.1576e-02,
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stdout 2020-11-12T23:24:32.690600: 2DIAGNOSTIC, 760, -1.036344647408e+00, 4.186169633158e-08, 2.0974e+01, 1.1574e-02,
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stdout 2020-11-12T23:24:32.702617: 2DIAGNOSTIC, 761, -1.036344647408e+00, 4.180667900755e-08, 2.0986e+01, 1.1834e-02,
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stdout 2020-11-12T23:24:32.714384: 2DIAGNOSTIC, 762, -1.036344647408e+00, 4.175180734478e-08, 2.0997e+01, 1.1574e-02,
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stdout 2020-11-12T23:24:32.726184: 2DIAGNOSTIC, 763, -1.036344647408e+00, 4.169707779056e-08, 2.1009e+01, 1.1592e-02,
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stdout 2020-11-12T23:24:32.737952: 2DIAGNOSTIC, 764, -1.036344647408e+00, 4.164249034488e-08, 2.1020e+01, 1.1585e-02,
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stdout 2020-11-12T23:24:32.749711: 2DIAGNOSTIC, 765, -1.036344647408e+00, 4.158804856047e-08, 2.1032e+01, 1.1574e-02,
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stdout 2020-11-12T23:24:32.761466: 2DIAGNOSTIC, 766, -1.036344647408e+00, 4.153374888460e-08, 2.1043e+01, 1.1571e-02,
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stdout 2020-11-12T23:24:32.773218: 2DIAGNOSTIC, 767, -1.036344647408e+00, 4.147958776457e-08, 2.1055e+01, 1.1568e-02,
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stdout 2020-11-12T23:24:32.784973: 2DIAGNOSTIC, 768, -1.036344647408e+00, 4.142556875308e-08, 2.1067e+01, 1.1571e-02,
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stdout 2020-11-12T23:24:32.796732: 2DIAGNOSTIC, 769, -1.036344647408e+00, 4.137169185014e-08, 2.1078e+01, 1.1574e-02,
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stdout 2020-11-12T23:24:32.808553: 2DIAGNOSTIC, 770, -1.036344647408e+00, 4.131795350304e-08, 2.1090e+01, 1.1638e-02,
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stdout 2020-11-12T23:24:32.820550: 2DIAGNOSTIC, 771, -1.036344647408e+00, 4.126435726448e-08, 2.1102e+01, 1.1814e-02,
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stdout 2020-11-12T23:24:32.832313: 2DIAGNOSTIC, 772, -1.036344647408e+00, 4.121089602904e-08, 2.1113e+01, 1.1575e-02,
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stdout 2020-11-12T23:24:32.844081: 2DIAGNOSTIC, 773, -1.036344647408e+00, 4.115757690215e-08, 2.1125e+01, 1.1574e-02,
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stdout 2020-11-12T23:24:32.855841: 2DIAGNOSTIC, 774, -1.036344647408e+00, 4.110439277838e-08, 2.1136e+01, 1.1576e-02,
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stdout 2020-11-12T23:24:32.867603: 2DIAGNOSTIC, 775, -1.036344647408e+00, 4.105134721044e-08, 2.1148e+01, 1.1578e-02,
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stdout 2020-11-12T23:24:32.879367: 2DIAGNOSTIC, 776, -1.036344647408e+00, 4.099843664562e-08, 2.1159e+01, 1.1578e-02,
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stdout 2020-11-12T23:24:32.891126: 2DIAGNOSTIC, 777, -1.036344647408e+00, 4.094566463664e-08, 2.1171e+01, 1.1570e-02,
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stdout 2020-11-12T23:24:32.902878: 2DIAGNOSTIC, 778, -1.036344647408e+00, 4.089302763077e-08, 2.1183e+01, 1.1569e-02,
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stdout 2020-11-12T23:24:32.914640: 2DIAGNOSTIC, 779, -1.036344647408e+00, 4.084052562803e-08, 2.1194e+01, 1.1579e-02,
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stdout 2020-11-12T23:24:32.926408: 2DIAGNOSTIC, 780, -1.036344647408e+00, 4.078815507569e-08, 2.1206e+01, 1.1570e-02,
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stdout 2020-11-12T23:24:32.938170: 2DIAGNOSTIC, 781, -1.036344647408e+00, 4.073592307918e-08, 2.1217e+01, 1.1578e-02,
201112-23:24:32,950 nipype.interface INFO:
stdout 2020-11-12T23:24:32.950186: 2DIAGNOSTIC, 782, -1.036344647408e+00, 4.068382253308e-08, 2.1229e+01, 1.1830e-02,
201112-23:24:32,961 nipype.interface INFO:
stdout 2020-11-12T23:24:32.961942: 2DIAGNOSTIC, 783, -1.036344647408e+00, 4.063185699010e-08, 2.1241e+01, 1.1569e-02,
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stdout 2020-11-12T23:24:32.973693: 2DIAGNOSTIC, 784, -1.036344647408e+00, 4.058002289753e-08, 2.1252e+01, 1.1567e-02,
201112-23:24:32,985 nipype.interface INFO:
stdout 2020-11-12T23:24:32.985503: 2DIAGNOSTIC, 785, -1.036344647408e+00, 4.052832025536e-08, 2.1264e+01, 1.1627e-02,
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stdout 2020-11-12T23:24:32.997259: 2DIAGNOSTIC, 786, -1.036344647408e+00, 4.047674906360e-08, 2.1276e+01, 1.1572e-02,
201112-23:24:33,9 nipype.interface INFO:
stdout 2020-11-12T23:24:33.009040: 2DIAGNOSTIC, 787, -1.036344647408e+00, 4.042530932225e-08, 2.1287e+01, 1.1579e-02,
201112-23:24:33,20 nipype.interface INFO:
stdout 2020-11-12T23:24:33.020800: 2DIAGNOSTIC, 788, -1.036344647408e+00, 4.037400103130e-08, 2.1299e+01, 1.1577e-02,
201112-23:24:33,32 nipype.interface INFO:
stdout 2020-11-12T23:24:33.032556: 2DIAGNOSTIC, 789, -1.036344647408e+00, 4.032282419075e-08, 2.1310e+01, 1.1571e-02,
201112-23:24:33,44 nipype.interface INFO:
stdout 2020-11-12T23:24:33.044306: 2DIAGNOSTIC, 790, -1.036344647408e+00, 4.027177169519e-08, 2.1322e+01, 1.1567e-02,
201112-23:24:33,56 nipype.interface INFO:
stdout 2020-11-12T23:24:33.056069: 2DIAGNOSTIC, 791, -1.036344647408e+00, 4.022085420274e-08, 2.1333e+01, 1.1570e-02,
201112-23:24:33,67 nipype.interface INFO:
stdout 2020-11-12T23:24:33.067822: 2DIAGNOSTIC, 792, -1.036344647408e+00, 4.017006105528e-08, 2.1345e+01, 1.1569e-02,
201112-23:24:33,79 nipype.interface INFO:
stdout 2020-11-12T23:24:33.079859: 2DIAGNOSTIC, 793, -1.036344647408e+00, 4.011939935822e-08, 2.1357e+01, 1.1854e-02,
201112-23:24:33,91 nipype.interface INFO:
stdout 2020-11-12T23:24:33.091624: 2DIAGNOSTIC, 794, -1.036344647408e+00, 4.006886200614e-08, 2.1368e+01, 1.1578e-02,
201112-23:24:33,103 nipype.interface INFO:
stdout 2020-11-12T23:24:33.103391: 2DIAGNOSTIC, 795, -1.036344647408e+00, 4.001845255175e-08, 2.1380e+01, 1.1575e-02,
201112-23:24:33,115 nipype.interface INFO:
stdout 2020-11-12T23:24:33.115152: 2DIAGNOSTIC, 796, -1.036344647408e+00, 3.996817099505e-08, 2.1392e+01, 1.1575e-02,
201112-23:24:33,126 nipype.interface INFO:
stdout 2020-11-12T23:24:33.126912: 2DIAGNOSTIC, 797, -1.036344647408e+00, 3.991801733605e-08, 2.1403e+01, 1.1575e-02,
201112-23:24:33,138 nipype.interface INFO:
stdout 2020-11-12T23:24:33.138680: 2DIAGNOSTIC, 798, -1.036344647408e+00, 3.986798446931e-08, 2.1415e+01, 1.1585e-02,
201112-23:24:33,150 nipype.interface INFO:
stdout 2020-11-12T23:24:33.150448: 2DIAGNOSTIC, 799, -1.036344647408e+00, 3.981808305298e-08, 2.1426e+01, 1.1585e-02,
201112-23:24:33,162 nipype.interface INFO:
stdout 2020-11-12T23:24:33.162207: 2DIAGNOSTIC, 800, -1.036344647408e+00, 3.976830242891e-08, 2.1438e+01, 1.1574e-02,
201112-23:24:33,173 nipype.interface INFO:
stdout 2020-11-12T23:24:33.173970: 2DIAGNOSTIC, 801, -1.036344647408e+00, 3.971864614982e-08, 2.1449e+01, 1.1579e-02,
201112-23:24:33,185 nipype.interface INFO:
stdout 2020-11-12T23:24:33.185726: 2DIAGNOSTIC, 802, -1.036344647408e+00, 3.966911421571e-08, 2.1461e+01, 1.1572e-02,
201112-23:24:33,197 nipype.interface INFO:
stdout 2020-11-12T23:24:33.197750: 2DIAGNOSTIC, 803, -1.036344647408e+00, 3.961970662658e-08, 2.1473e+01, 1.1839e-02,
201112-23:24:33,209 nipype.interface INFO:
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201112-23:24:33,221 nipype.interface INFO:
stdout 2020-11-12T23:24:33.221285: 2DIAGNOSTIC, 805, -1.036344647408e+00, 3.952125737783e-08, 2.1496e+01, 1.1567e-02,
201112-23:24:33,233 nipype.interface INFO:
stdout 2020-11-12T23:24:33.233053: 2DIAGNOSTIC, 806, -1.036344647408e+00, 3.947221571821e-08, 2.1508e+01, 1.1575e-02,
201112-23:24:33,244 nipype.interface INFO:
stdout 2020-11-12T23:24:33.244811: 2DIAGNOSTIC, 807, -1.036344647408e+00, 3.942329485085e-08, 2.1519e+01, 1.1574e-02,
201112-23:24:33,256 nipype.interface INFO:
stdout 2020-11-12T23:24:33.256570: 2DIAGNOSTIC, 808, -1.036344647408e+00, 3.937449832847e-08, 2.1531e+01, 1.1574e-02,
201112-23:24:33,268 nipype.interface INFO:
stdout 2020-11-12T23:24:33.268377: 2DIAGNOSTIC, 809, -1.036344647408e+00, 3.932581904564e-08, 2.1542e+01, 1.1622e-02,
201112-23:24:33,280 nipype.interface INFO:
stdout 2020-11-12T23:24:33.280145: 2DIAGNOSTIC, 810, -1.036344647408e+00, 3.927726410780e-08, 2.1554e+01, 1.1573e-02,
201112-23:24:33,291 nipype.interface INFO:
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201112-23:24:40,798 nipype.interface INFO:
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201112-23:25:30,140 nipype.interface INFO:
stdout 2020-11-12T23:25:30.140083:DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201112-23:25:30,140 nipype.interface INFO:
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stdout 2020-11-12T23:37:46.847456: 2DIAGNOSTIC, 96, -5.188303589821e-01, 3.298109163552e-07, 8.1483e+02, 5.4032e+00,
201112-23:37:52,248 nipype.interface INFO:
stdout 2020-11-12T23:37:52.248591: 2DIAGNOSTIC, 97, -5.188304781914e-01, 3.261201868554e-07, 8.2023e+02, 5.4007e+00,
201112-23:37:57,660 nipype.interface INFO:
stdout 2020-11-12T23:37:57.660010: 2DIAGNOSTIC, 98, -5.188304781914e-01, 3.226487308439e-07, 8.2565e+02, 5.4110e+00,
201112-23:38:03,77 nipype.interface INFO:
stdout 2020-11-12T23:38:03.077691: 2DIAGNOSTIC, 99, -5.188305377960e-01, 3.197438616098e-07, 8.3106e+02, 5.4173e+00,
201112-23:38:08,490 nipype.interface INFO:
stdout 2020-11-12T23:38:08.490188: 2DIAGNOSTIC, 100, -5.188305377960e-01, 3.170530646912e-07, 8.3647e+02, 5.4121e+00,
201112-23:38:08,492 nipype.interface INFO:
stdout 2020-11-12T23:38:08.492421: Elapsed time (stage 1): 8.3962e+02
201112-23:38:08,492 nipype.interface INFO:
stdout 2020-11-12T23:38:08.492657:
201112-23:38:08,496 nipype.interface INFO:
stdout 2020-11-12T23:38:08.496941:
201112-23:38:08,497 nipype.interface INFO:
stdout 2020-11-12T23:38:08.497110:Stage 2
201112-23:38:08,497 nipype.interface INFO:
stdout 2020-11-12T23:38:08.497258: iterations = 50x10x0
201112-23:38:08,497 nipype.interface INFO:
stdout 2020-11-12T23:38:08.497412: convergence threshold = 1.0000e-09
201112-23:38:08,497 nipype.interface INFO:
stdout 2020-11-12T23:38:08.497777: convergence window size = 15
201112-23:38:08,497 nipype.interface INFO:
stdout 2020-11-12T23:38:08.497951: number of levels = 3
201112-23:38:08,498 nipype.interface INFO:
stdout 2020-11-12T23:38:08.498116: using the CC metric (radius = 4, weight = 5.0000e-01)
201112-23:38:11,180 nipype.interface INFO:
stdout 2020-11-12T23:38:11.180355: preprocessing: winsorizing the image intensities
201112-23:38:11,180 nipype.interface INFO:
stdout 2020-11-12T23:38:11.180355: preprocessing: histogram matching the images
201112-23:38:11,180 nipype.interface INFO:
stdout 2020-11-12T23:38:11.180861: using the CC metric (radius = 4, weight = 5.0000e-01)
201112-23:38:13,945 nipype.interface INFO:
stdout 2020-11-12T23:38:13.945710: preprocessing: winsorizing the image intensities
201112-23:38:13,946 nipype.interface INFO:
stdout 2020-11-12T23:38:13.945710: preprocessing: histogram matching the images
201112-23:38:13,946 nipype.interface INFO:
stdout 2020-11-12T23:38:13.946177: Shrink factors (level 1 out of 3): [4, 4, 4]
201112-23:38:13,946 nipype.interface INFO:
stdout 2020-11-12T23:38:13.946326: Shrink factors (level 2 out of 3): [2, 2, 2]
201112-23:38:13,946 nipype.interface INFO:
stdout 2020-11-12T23:38:13.946474: Shrink factors (level 3 out of 3): [1, 1, 1]
201112-23:38:13,946 nipype.interface INFO:
stdout 2020-11-12T23:38:13.946615: smoothing sigmas per level: [2, 1, 0]
201112-23:38:13,946 nipype.interface INFO:
stdout 2020-11-12T23:38:13.946748: Using default NONE metricSamplingStrategy
201112-23:38:14,77 nipype.interface INFO:
stdout 2020-11-12T23:38:14.077651:
201112-23:38:14,78 nipype.interface INFO:
stdout 2020-11-12T23:38:14.077999:*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) ***
201112-23:38:14,78 nipype.interface INFO:
stdout 2020-11-12T23:38:14.078146:
201112-23:38:41,183 nipype.interface INFO:
stdout 2020-11-12T23:38:41.181377:XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201112-23:38:41,183 nipype.interface INFO:
stdout 2020-11-12T23:38:41.183634: 1DIAGNOSTIC, 1, -5.168911218643e-01, inf, 2.7106e+01, 2.7106e+01,
201112-23:38:59,387 nipype.interface INFO:
stdout 2020-11-12T23:38:59.387012: 1DIAGNOSTIC, 2, -5.298137664795e-01, inf, 4.5309e+01, 1.8203e+01,
201112-23:39:17,647 nipype.interface INFO:
stdout 2020-11-12T23:39:17.647633: 1DIAGNOSTIC, 3, -5.469102859497e-01, inf, 6.3569e+01, 1.8260e+01,
201112-23:39:35,999 nipype.interface INFO:
stdout 2020-11-12T23:39:35.999141: 1DIAGNOSTIC, 4, -5.591070055962e-01, inf, 8.1920e+01, 1.8351e+01,
201112-23:39:54,328 nipype.interface INFO:
stdout 2020-11-12T23:39:54.328150: 1DIAGNOSTIC, 5, -5.693349838257e-01, inf, 1.0025e+02, 1.8329e+01,
201112-23:40:12,549 nipype.interface INFO:
stdout 2020-11-12T23:40:12.549689: 1DIAGNOSTIC, 6, -5.784753561020e-01, inf, 1.1847e+02, 1.8221e+01,
201112-23:40:30,734 nipype.interface INFO:
stdout 2020-11-12T23:40:30.734423: 1DIAGNOSTIC, 7, -5.862294435501e-01, inf, 1.3665e+02, 1.8177e+01,
201112-23:40:48,920 nipype.interface INFO:
stdout 2020-11-12T23:40:48.920638: 1DIAGNOSTIC, 8, -5.937058925629e-01, inf, 1.5483e+02, 1.8186e+01,
201112-23:41:07,155 nipype.interface INFO:
stdout 2020-11-12T23:41:07.155366: 1DIAGNOSTIC, 9, -6.001040339470e-01, inf, 1.7307e+02, 1.8234e+01,
201112-23:41:25,378 nipype.interface INFO:
stdout 2020-11-12T23:41:25.377953: 1DIAGNOSTIC, 10, -6.054532527924e-01, inf, 1.9129e+02, 1.8222e+01,
201112-23:41:43,573 nipype.interface INFO:
stdout 2020-11-12T23:41:43.573258: 1DIAGNOSTIC, 11, -6.101518869400e-01, inf, 2.0948e+02, 1.8195e+01,
201112-23:42:01,807 nipype.interface INFO:
stdout 2020-11-12T23:42:01.807007: 1DIAGNOSTIC, 12, -6.142991185188e-01, inf, 2.2772e+02, 1.8233e+01,
201112-23:42:20,62 nipype.interface INFO:
stdout 2020-11-12T23:42:20.062307: 1DIAGNOSTIC, 13, -6.181502938271e-01, inf, 2.4597e+02, 1.8255e+01,
201112-23:42:38,370 nipype.interface INFO:
stdout 2020-11-12T23:42:38.370595: 1DIAGNOSTIC, 14, -6.216956377029e-01, inf, 2.6428e+02, 1.8308e+01,
201112-23:42:56,539 nipype.interface INFO:
stdout 2020-11-12T23:42:56.539727: 1DIAGNOSTIC, 15, -6.250098943710e-01, 7.241611368954e-03, 2.8245e+02, 1.8169e+01,
201112-23:43:14,885 nipype.interface INFO:
stdout 2020-11-12T23:43:14.885858: 1DIAGNOSTIC, 16, -6.281216144562e-01, 5.960119422525e-03, 3.0079e+02, 1.8346e+01,
201112-23:43:33,101 nipype.interface INFO:
stdout 2020-11-12T23:43:33.101615: 1DIAGNOSTIC, 17, -6.309325098991e-01, 4.885272122920e-03, 3.1901e+02, 1.8215e+01,
201112-23:43:51,302 nipype.interface INFO:
stdout 2020-11-12T23:43:51.302310: 1DIAGNOSTIC, 18, -6.331641674042e-01, 4.078494850546e-03, 3.3721e+02, 1.8200e+01,
201112-23:44:09,620 nipype.interface INFO:
stdout 2020-11-12T23:44:09.620799: 1DIAGNOSTIC, 19, -6.352968215942e-01, 3.432548837736e-03, 3.5553e+02, 1.8316e+01,
201112-23:44:27,936 nipype.interface INFO:
stdout 2020-11-12T23:44:27.936794: 1DIAGNOSTIC, 20, -6.371387243271e-01, 2.903457731009e-03, 3.7384e+02, 1.8316e+01,
201112-23:44:46,179 nipype.interface INFO:
stdout 2020-11-12T23:44:46.179873: 1DIAGNOSTIC, 21, -6.388238072395e-01, 2.469466533512e-03, 3.9208e+02, 1.8243e+01,
201112-23:45:04,528 nipype.interface INFO:
stdout 2020-11-12T23:45:04.527922: 1DIAGNOSTIC, 22, -6.398862600327e-01, 2.099663252011e-03, 4.1043e+02, 1.8348e+01,
201112-23:45:22,870 nipype.interface INFO:
stdout 2020-11-12T23:45:22.870554: 1DIAGNOSTIC, 23, -6.410845518112e-01, 1.794391660951e-03, 4.2877e+02, 1.8342e+01,
201112-23:45:41,168 nipype.interface INFO:
stdout 2020-11-12T23:45:41.168141: 1DIAGNOSTIC, 24, -6.419454813004e-01, 1.535471528769e-03, 4.4707e+02, 1.8297e+01,
201112-23:45:59,416 nipype.interface INFO:
stdout 2020-11-12T23:45:59.416673: 1DIAGNOSTIC, 25, -6.427583694458e-01, 1.310943043791e-03, 4.6532e+02, 1.8248e+01,
201112-23:46:17,763 nipype.interface INFO:
stdout 2020-11-12T23:46:17.763713: 1DIAGNOSTIC, 26, -6.434478759766e-01, 1.114079612307e-03, 4.8367e+02, 1.8347e+01,
201112-23:46:36,73 nipype.interface INFO:
stdout 2020-11-12T23:46:36.073311: 1DIAGNOSTIC, 27, -6.443327069283e-01, 9.435932734050e-04, 5.0197e+02, 1.8309e+01,
201112-23:46:54,375 nipype.interface INFO:
stdout 2020-11-12T23:46:54.375847: 1DIAGNOSTIC, 28, -6.449205875397e-01, 7.951495354064e-04, 5.2028e+02, 1.8302e+01,
201112-23:47:12,636 nipype.interface INFO:
stdout 2020-11-12T23:47:12.636645: 1DIAGNOSTIC, 29, -6.457225680351e-01, 6.702147657052e-04, 5.3854e+02, 1.8260e+01,
201112-23:47:30,929 nipype.interface INFO:
stdout 2020-11-12T23:47:30.929294: 1DIAGNOSTIC, 30, -6.462013721466e-01, 5.645696655847e-04, 5.5683e+02, 1.8292e+01,
201112-23:47:49,212 nipype.interface INFO:
stdout 2020-11-12T23:47:49.212160: 1DIAGNOSTIC, 31, -6.469299793243e-01, 4.804013005923e-04, 5.7511e+02, 1.8282e+01,
201112-23:48:07,495 nipype.interface INFO:
stdout 2020-11-12T23:48:07.494973: 1DIAGNOSTIC, 32, -6.476181745529e-01, 4.150802269578e-04, 5.9339e+02, 1.8282e+01,
201112-23:48:25,877 nipype.interface INFO:
stdout 2020-11-12T23:48:25.877317: 1DIAGNOSTIC, 33, -6.482428312302e-01, 3.627699625213e-04, 6.1178e+02, 1.8382e+01,
201112-23:48:44,181 nipype.interface INFO:
stdout 2020-11-12T23:48:44.181106: 1DIAGNOSTIC, 34, -6.488195657730e-01, 3.226417175028e-04, 6.3008e+02, 1.8303e+01,
201112-23:49:02,475 nipype.interface INFO:
stdout 2020-11-12T23:49:02.475603: 1DIAGNOSTIC, 35, -6.493561267853e-01, 2.919618273154e-04, 6.4837e+02, 1.8292e+01,
201112-23:49:20,845 nipype.interface INFO:
stdout 2020-11-12T23:49:20.844982: 1DIAGNOSTIC, 36, -6.499015092850e-01, 2.696815063246e-04, 6.6674e+02, 1.8369e+01,
201112-23:49:39,181 nipype.interface INFO:
stdout 2020-11-12T23:49:39.181043: 1DIAGNOSTIC, 37, -6.503911614418e-01, 2.499344409443e-04, 6.8508e+02, 1.8335e+01,
201112-23:49:57,572 nipype.interface INFO:
stdout 2020-11-12T23:49:57.572613: 1DIAGNOSTIC, 38, -6.508679389954e-01, 2.341309154872e-04, 7.0347e+02, 1.8391e+01,
201112-23:50:15,927 nipype.interface INFO:
stdout 2020-11-12T23:50:15.927339: 1DIAGNOSTIC, 39, -6.510322093964e-01, 2.171611122321e-04, 7.2182e+02, 1.8354e+01,
201112-23:50:34,291 nipype.interface INFO:
stdout 2020-11-12T23:50:34.291086: 1DIAGNOSTIC, 40, -6.512585878372e-01, 1.997666113311e-04, 7.4018e+02, 1.8363e+01,
201112-23:50:52,694 nipype.interface INFO:
stdout 2020-11-12T23:50:52.694808: 1DIAGNOSTIC, 41, -6.514691114426e-01, 1.813981070882e-04, 7.5859e+02, 1.8403e+01,
201112-23:51:11,7 nipype.interface INFO:
stdout 2020-11-12T23:51:11.006911: 1DIAGNOSTIC, 42, -6.518058776855e-01, 1.651154307183e-04, 7.7690e+02, 1.8312e+01,
201112-23:51:29,387 nipype.interface INFO:
stdout 2020-11-12T23:51:29.387326: 1DIAGNOSTIC, 43, -6.520366668701e-01, 1.482909574406e-04, 7.9528e+02, 1.8380e+01,
201112-23:51:47,833 nipype.interface INFO:
stdout 2020-11-12T23:51:47.833098: 1DIAGNOSTIC, 44, -6.522293686867e-01, 1.328076468781e-04, 8.1372e+02, 1.8445e+01,
201112-23:52:06,156 nipype.interface INFO:
stdout 2020-11-12T23:52:06.156350: 1DIAGNOSTIC, 45, -6.524415612221e-01, 1.169622191810e-04, 8.3205e+02, 1.8323e+01,
201112-23:52:24,514 nipype.interface INFO:
stdout 2020-11-12T23:52:24.513997: 1DIAGNOSTIC, 46, -6.525890827179e-01, 1.025939563988e-04, 8.5040e+02, 1.8357e+01,
201112-23:52:42,919 nipype.interface INFO:
stdout 2020-11-12T23:52:42.919587: 1DIAGNOSTIC, 47, -6.528303623199e-01, 9.049037907971e-05, 8.6881e+02, 1.8405e+01,
201112-23:53:01,249 nipype.interface INFO:
stdout 2020-11-12T23:53:01.249562: 1DIAGNOSTIC, 48, -6.530178785324e-01, 8.015515049919e-05, 8.8714e+02, 1.8329e+01,
201112-23:53:19,579 nipype.interface INFO:
stdout 2020-11-12T23:53:19.579000: 1DIAGNOSTIC, 49, -6.532112360001e-01, 7.155770435929e-05, 9.0547e+02, 1.8329e+01,
201112-23:53:37,912 nipype.interface INFO:
stdout 2020-11-12T23:53:37.912703: 1DIAGNOSTIC, 50, -6.534397006035e-01, 6.483599281637e-05, 9.2380e+02, 1.8333e+01,
201112-23:56:04,496 nipype.interface INFO:
stdout 2020-11-12T23:56:04.496357:XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201112-23:56:04,496 nipype.interface INFO:
stdout 2020-11-12T23:56:04.496914: 1DIAGNOSTIC, 1, -5.077991485596e-01, inf, 1.0704e+03, 1.4658e+02,
201112-23:58:28,33 nipype.interface INFO:
stdout 2020-11-12T23:58:28.033529: 1DIAGNOSTIC, 2, -5.106545686722e-01, inf, 1.2139e+03, 1.4354e+02,
201113-00:00:51,478 nipype.interface INFO:
stdout 2020-11-13T00:00:51.478443: 1DIAGNOSTIC, 3, -5.141443014145e-01, inf, 1.3574e+03, 1.4344e+02,
201113-00:03:14,559 nipype.interface INFO:
stdout 2020-11-13T00:03:14.559713: 1DIAGNOSTIC, 4, -5.173454284668e-01, inf, 1.5004e+03, 1.4308e+02,
201113-00:05:37,670 nipype.interface INFO:
stdout 2020-11-13T00:05:37.670161: 1DIAGNOSTIC, 5, -5.204422473907e-01, inf, 1.6436e+03, 1.4311e+02,
201113-00:08:00,795 nipype.interface INFO:
stdout 2020-11-13T00:08:00.795092: 1DIAGNOSTIC, 6, -5.231970548630e-01, inf, 1.7867e+03, 1.4312e+02,
201113-00:10:23,564 nipype.interface INFO:
stdout 2020-11-13T00:10:23.564188: 1DIAGNOSTIC, 7, -5.258527994156e-01, inf, 1.9294e+03, 1.4277e+02,
201113-00:12:46,227 nipype.interface INFO:
stdout 2020-11-13T00:12:46.227676: 1DIAGNOSTIC, 8, -5.284546017647e-01, inf, 2.0721e+03, 1.4266e+02,
201113-00:15:09,722 nipype.interface INFO:
stdout 2020-11-13T00:15:09.722286: 1DIAGNOSTIC, 9, -5.309048891068e-01, inf, 2.2156e+03, 1.4349e+02,
201113-00:17:32,293 nipype.interface INFO:
stdout 2020-11-13T00:17:32.293757: 1DIAGNOSTIC, 10, -5.332571268082e-01, inf, 2.3582e+03, 1.4257e+02,
201113-00:17:53,29 nipype.interface INFO:
stdout 2020-11-13T00:17:53.028914: Elapsed time (stage 2): 2385
201113-00:17:53,29 nipype.interface INFO:
stdout 2020-11-13T00:17:53.029429:
201113-00:17:53,34 nipype.interface INFO:
stdout 2020-11-13T00:17:53.034816:
201113-00:17:53,34 nipype.interface INFO:
stdout 2020-11-13T00:17:53.034980:Total elapsed time: 3898
201113-00:19:32,827 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.norm".
201113-00:19:32,836 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.map_brainmask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/map_brainmask".
201113-00:19:32,854 nipype.workflow INFO:
[Node] Running "map_brainmask" ("CPAC.utils.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /ants_template/oasis/T_template0_BrainCerebellumProbabilityMask.nii.gz --interpolation Gaussian --output T_template0_BrainCerebellumProbabilityMask_trans.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-128_ses-1_T1w_resample.nii.gz --transform [ /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/norm/anat_to_template0GenericAffine.mat, 1 ] --transform [ /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/norm/anat_to_template1InverseWarp.nii.gz, 0 ]
201113-00:20:04,545 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.map_brainmask".
201113-00:20:04,547 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.thr_brainmask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/thr_brainmask".
201113-00:20:04,554 nipype.workflow INFO:
[Node] Running "thr_brainmask" ("CPAC.utils.interfaces.ants.ThresholdImage"), a CommandLine Interface with command:
ThresholdImage 3 /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/map_brainmask/T_template0_BrainCerebellumProbabilityMask_trans.nii.gz T_template0_BrainCerebellumProbabilityMask_trans_resampled.nii.gz 0.500000 1.000000 1.000000 0.000000
201113-00:20:04,956 nipype.interface INFO:
stderr 2020-11-13T00:20:04.956122: file 1.000000 does not exist .
201113-00:20:05,442 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.thr_brainmask".
201113-00:20:05,444 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.03_pad_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/03_pad_mask".
201113-00:20:05,449 nipype.workflow INFO:
[Node] Running "03_pad_mask" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 T_template0_BrainCerebellumProbabilityMask_trans_resampled_maths.nii.gz PadImage /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/thr_brainmask/T_template0_BrainCerebellumProbabilityMask_trans_resampled.nii.gz 10
201113-00:20:06,781 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.03_pad_mask".
201113-00:20:06,783 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.dil_brainmask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/dil_brainmask".
201113-00:20:06,788 nipype.workflow INFO:
[Node] Running "dil_brainmask" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 T_template0_BrainCerebellumProbabilityMask_trans_resampled_maths.nii.gz MD /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/thr_brainmask/T_template0_BrainCerebellumProbabilityMask_trans_resampled.nii.gz 2
201113-00:20:08,466 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.dil_brainmask".
201113-00:20:08,468 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.get_brainmask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/get_brainmask".
201113-00:20:08,474 nipype.workflow INFO:
[Node] Running "get_brainmask" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 T_template0_BrainCerebellumProbabilityMask_trans_resampled_maths_maths.nii.gz GetLargestComponent /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/dil_brainmask/T_template0_BrainCerebellumProbabilityMask_trans_resampled_maths.nii.gz
201113-00:20:09,991 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.get_brainmask".
201113-00:20:09,993 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.01_atropos" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/01_atropos".
201113-00:20:10,0 nipype.workflow INFO:
[Node] Running "01_atropos" ("nipype.interfaces.ants.segmentation.Atropos"), a CommandLine Interface with command:
Atropos --image-dimensionality 3 --initialization KMeans[3] --intensity-image /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-128_ses-1_T1w_resample_maths_corrected.nii.gz --likelihood-model Gaussian --mask-image /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/get_brainmask/T_template0_BrainCerebellumProbabilityMask_trans_resampled_maths_maths.nii.gz --mrf [0.1,1x1x1] --convergence [3,0] --output [sub-128_ses-1_T1w_resample_maths_corrected_labeled.nii.gz] --use-random-seed 1
201113-00:20:55,506 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.01_atropos".
201113-00:20:55,508 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.02_pad_segm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/02_pad_segm".
201113-00:20:55,514 nipype.workflow INFO:
[Node] Running "02_pad_segm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-128_ses-1_T1w_resample_maths_corrected_labeled_maths.nii.gz PadImage /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/01_atropos/sub-128_ses-1_T1w_resample_maths_corrected_labeled.nii.gz 10
201113-00:20:56,904 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.02_pad_segm".
201113-00:20:56,905 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.04_sel_labels" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/04_sel_labels".
201113-00:20:56,910 nipype.workflow INFO:
[Node] Running "04_sel_labels" ("nipype.interfaces.utility.wrappers.Function")
201113-00:20:57,587 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.04_sel_labels".
201113-00:20:57,589 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.27_depad_csf" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/27_depad_csf".
201113-00:20:57,594 nipype.workflow INFO:
[Node] Running "27_depad_csf" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-128_ses-1_T1w_resample_maths_corrected_labeled_maths_class-01_maths.nii.gz PadImage /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/04_sel_labels/sub-128_ses-1_T1w_resample_maths_corrected_labeled_maths_class-01.nii.gz -10
201113-00:20:58,766 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.27_depad_csf".
201113-00:20:58,768 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.10_me_csf" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/10_me_csf".
201113-00:20:58,773 nipype.workflow INFO:
[Node] Running "10_me_csf" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-128_ses-1_T1w_resample_maths_corrected_labeled_maths_class-01_maths.nii.gz ME /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/04_sel_labels/sub-128_ses-1_T1w_resample_maths_corrected_labeled_maths_class-01.nii.gz 10
201113-00:21:03,983 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.10_me_csf".
201113-00:21:03,985 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.06_get_gm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/06_get_gm".
201113-00:21:03,990 nipype.workflow INFO:
[Node] Running "06_get_gm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-128_ses-1_T1w_resample_maths_corrected_labeled_maths_class-02_maths.nii.gz GetLargestComponent /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/04_sel_labels/sub-128_ses-1_T1w_resample_maths_corrected_labeled_maths_class-02.nii.gz
201113-00:21:05,751 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.06_get_gm".
201113-00:21:05,753 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.07_fill_gm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/07_fill_gm".
201113-00:21:05,758 nipype.workflow INFO:
[Node] Running "07_fill_gm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-128_ses-1_T1w_resample_maths_corrected_labeled_maths_class-02_maths_maths.nii.gz FillHoles /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/06_get_gm/sub-128_ses-1_T1w_resample_maths_corrected_labeled_maths_class-02_maths.nii.gz 2
201113-00:21:16,422 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.07_fill_gm".
201113-00:21:16,423 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.08_mult_gm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/08_mult_gm".
201113-00:21:16,428 nipype.workflow INFO:
[Node] Running "08_mult_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command:
MultiplyImages 3 /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/06_get_gm/sub-128_ses-1_T1w_resample_maths_corrected_labeled_maths_class-02_maths.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/07_fill_gm/sub-128_ses-1_T1w_resample_maths_corrected_labeled_maths_class-02_maths_maths.nii.gz 08_mult_gm.nii.gz
201113-00:21:17,869 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.08_mult_gm".
201113-00:21:17,870 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.11_add_gm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/11_add_gm".
201113-00:21:17,879 nipype.workflow INFO:
[Node] Running "11_add_gm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 08_mult_gm_maths.nii.gz addtozero /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/08_mult_gm/08_mult_gm.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/10_me_csf/sub-128_ses-1_T1w_resample_maths_corrected_labeled_maths_class-01_maths.nii.gz
201113-00:21:22,65 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.11_add_gm".
201113-00:21:22,66 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.12_relabel_gm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/12_relabel_gm".
201113-00:21:22,73 nipype.workflow INFO:
[Node] Running "12_relabel_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command:
MultiplyImages 3 /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/11_add_gm/08_mult_gm_maths.nii.gz 2.0 12_relabel_gm.nii.gz
201113-00:21:23,231 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.12_relabel_gm".
201113-00:21:23,232 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.25_depad_gm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/25_depad_gm".
201113-00:21:23,237 nipype.workflow INFO:
[Node] Running "25_depad_gm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 12_relabel_gm_maths.nii.gz PadImage /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz -10
201113-00:21:24,653 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.25_depad_gm".
201113-00:21:24,654 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.05_get_wm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/05_get_wm".
201113-00:21:24,659 nipype.workflow INFO:
[Node] Running "05_get_wm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-128_ses-1_T1w_resample_maths_corrected_labeled_maths_class-03_maths.nii.gz GetLargestComponent /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/04_sel_labels/sub-128_ses-1_T1w_resample_maths_corrected_labeled_maths_class-03.nii.gz
201113-00:21:26,367 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.05_get_wm".
201113-00:21:26,368 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.09_relabel_wm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/09_relabel_wm".
201113-00:21:26,374 nipype.workflow INFO:
[Node] Running "09_relabel_wm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command:
MultiplyImages 3 /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/05_get_wm/sub-128_ses-1_T1w_resample_maths_corrected_labeled_maths_class-03_maths.nii.gz 3.0 09_relabel_wm.nii.gz
201113-00:21:27,490 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.09_relabel_wm".
201113-00:21:27,492 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.26_depad_wm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/26_depad_wm".
201113-00:21:27,497 nipype.workflow INFO:
[Node] Running "26_depad_wm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths.nii.gz PadImage /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz -10
201113-00:21:28,881 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.26_depad_wm".
201113-00:21:28,883 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.merge_tpms" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/merge_tpms".
201113-00:21:28,889 nipype.workflow INFO:
[Node] Running "merge_tpms" ("nipype.interfaces.utility.base.Merge")
201113-00:21:29,116 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.merge_tpms".
201113-00:21:29,118 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.13_add_gm_wm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/13_add_gm_wm".
201113-00:21:29,124 nipype.workflow INFO:
[Node] Running "13_add_gm_wm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths.nii.gz addtozero /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz
201113-00:21:33,312 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.13_add_gm_wm".
201113-00:21:33,313 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.24_depad_segm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/24_depad_segm".
201113-00:21:33,318 nipype.workflow INFO:
[Node] Running "24_depad_segm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_maths.nii.gz PadImage /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/13_add_gm_wm/09_relabel_wm_maths.nii.gz -10
201113-00:21:34,744 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.24_depad_segm".
201113-00:21:34,746 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.14_sel_labels2" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/14_sel_labels2".
201113-00:21:34,750 nipype.workflow INFO:
[Node] Running "14_sel_labels2" ("nipype.interfaces.utility.wrappers.Function")
201113-00:21:35,363 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.14_sel_labels2".
201113-00:21:35,365 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.15_add_7" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/15_add_7".
201113-00:21:35,370 nipype.workflow INFO:
[Node] Running "15_add_7" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths.nii.gz addtozero /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-03.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-02.nii.gz
201113-00:21:39,204 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.15_add_7".
201113-00:21:39,205 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.16_me_7" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/16_me_7".
201113-00:21:39,211 nipype.workflow INFO:
[Node] Running "16_me_7" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths.nii.gz ME /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/15_add_7/09_relabel_wm_maths_class-03_maths.nii.gz 2
201113-00:21:42,752 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.16_me_7".
201113-00:21:42,754 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.17_comp_7" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/17_comp_7".
201113-00:21:42,760 nipype.workflow INFO:
[Node] Running "17_comp_7" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz GetLargestComponent /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/16_me_7/09_relabel_wm_maths_class-03_maths_maths.nii.gz
201113-00:21:44,603 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.17_comp_7".
201113-00:21:44,604 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.18_md_7" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/18_md_7".
201113-00:21:44,610 nipype.workflow INFO:
[Node] Running "18_md_7" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz MD /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/17_comp_7/09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz 4
201113-00:21:46,712 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.18_md_7".
201113-00:21:46,713 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.19_fill_7" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/19_fill_7".
201113-00:21:46,718 nipype.workflow INFO:
[Node] Running "19_fill_7" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz FillHoles /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/18_md_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz 2
201113-00:21:56,713 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.19_fill_7".
201113-00:21:56,714 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.20_add_7_2" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/20_add_7_2".
201113-00:21:56,720 nipype.workflow INFO:
[Node] Running "20_add_7_2" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz addtozero /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/19_fill_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/03_pad_mask/T_template0_BrainCerebellumProbabilityMask_trans_resampled_maths.nii.gz
201113-00:22:00,869 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.20_add_7_2".
201113-00:22:00,871 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.21_md_7_2" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/21_md_7_2".
201113-00:22:00,877 nipype.workflow INFO:
[Node] Running "21_md_7_2" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz MD /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/20_add_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz 5
201113-00:22:02,966 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.21_md_7_2".
201113-00:22:02,968 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.22_me_7_2" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/22_me_7_2".
201113-00:22:02,975 nipype.workflow INFO:
[Node] Running "22_me_7_2" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz ME /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/21_md_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz 5
201113-00:22:06,675 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.22_me_7_2".
201113-00:22:06,677 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.23_depad_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/23_depad_mask".
201113-00:22:06,683 nipype.workflow INFO:
[Node] Running "23_depad_mask" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz PadImage /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/22_me_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz -10
201113-00:22:08,32 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.23_depad_mask".
201113-00:22:08,34 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.msk_conform" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/msk_conform".
201113-00:22:08,41 nipype.workflow INFO:
[Node] Running "msk_conform" ("nipype.interfaces.utility.wrappers.Function")
201113-00:22:08,542 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.msk_conform".
201113-00:22:08,544 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.copy_xform" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/copy_xform".
201113-00:22:08,551 nipype.workflow INFO:
[Node] Running "copy_xform" ("CPAC.utils.interfaces.utils.CopyXForm")
201113-00:22:10,277 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.copy_xform".
201113-00:22:10,279 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_anatomical_brain_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/sinker_0_anatomical_brain_mask".
201113-00:22:10,287 nipype.workflow INFO:
[Node] Running "sinker_0_anatomical_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:22:10,515 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_anatomical_brain_mask".
201113-00:22:10,517 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.sel_wm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/sel_wm".
201113-00:22:10,522 nipype.workflow INFO:
[Node] Running "sel_wm" ("nipype.interfaces.utility.base.Select")
201113-00:22:10,748 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.sel_wm".
201113-00:22:10,749 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.inu_n4_final" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4_final".
201113-00:22:10,757 nipype.workflow INFO:
[Node] Setting-up "_inu_n4_final0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4_final/mapflow/_inu_n4_final0".
201113-00:22:10,762 nipype.workflow INFO:
[Node] Running "_inu_n4_final0" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-128_ses-1_T1w_resample.nii.gz --convergence [ 50x50x50x50x50, 1e-07 ] --output [ sub-128_ses-1_T1w_resample_corrected.nii.gz, sub-128_ses-1_T1w_resample_bias.nii.gz ] --shrink-factor 4 --weight-image /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/copy_xform/09_relabel_wm_maths_xform.nii.gz
201113-00:23:06,113 nipype.workflow INFO:
[Node] Finished "_inu_n4_final0".
201113-00:23:06,117 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.inu_n4_final".
201113-00:23:06,118 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.apply_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/apply_mask".
201113-00:23:06,125 nipype.workflow INFO:
[Node] Setting-up "_apply_mask0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/apply_mask/mapflow/_apply_mask0".
201113-00:23:06,131 nipype.workflow INFO:
[Node] Running "_apply_mask0" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4_final/mapflow/_inu_n4_final0/sub-128_ses-1_T1w_resample_corrected.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/copy_xform/09_relabel_wm_mask_xform.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/apply_mask/mapflow/_apply_mask0/sub-128_ses-1_T1w_resample_corrected_masked.nii.gz
201113-00:23:07,541 nipype.workflow INFO:
[Node] Finished "_apply_mask0".
201113-00:23:07,545 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.apply_mask".
201113-00:23:07,545 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.copy_xform" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform".
201113-00:23:07,553 nipype.workflow INFO:
[Node] Running "copy_xform" ("CPAC.utils.interfaces.utils.CopyXForm")
201113-00:23:13,131 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.copy_xform".
201113-00:23:13,133 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt".
201113-00:23:13,140 nipype.workflow INFO:
[Node] Running "Anatomical_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -omat sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.mat -applyisoxfm 2.000000
201113-00:23:16,744 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt".
201113-00:23:16,746 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt".
201113-00:23:16,754 nipype.workflow INFO:
[Node] Running "Anatomical_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -omat sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.mat -applyisoxfm 2.000000
201113-00:23:20,345 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt".
201113-00:23:20,346 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt".
201113-00:23:20,353 nipype.workflow INFO:
[Node] Running "Anatomical_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -omat sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.mat -applyisoxfm 2.000000
201113-00:23:23,954 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt".
201113-00:23:23,955 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt".
201113-00:23:23,966 nipype.workflow INFO:
[Node] Running "Anatomical_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -omat sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.mat -applyisoxfm 2.000000
201113-00:23:27,530 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt".
201113-00:23:27,532 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt".
201113-00:23:27,541 nipype.workflow INFO:
[Node] Running "Anatomical_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -omat sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.mat -applyisoxfm 2.000000
201113-00:23:31,151 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt".
201113-00:23:31,153 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt".
201113-00:23:31,164 nipype.workflow INFO:
[Node] Running "Anatomical_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -omat sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.mat -applyisoxfm 2.000000
201113-00:23:34,749 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt".
201113-00:23:34,751 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt".
201113-00:23:34,761 nipype.workflow INFO:
[Node] Running "Anatomical_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -omat sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.mat -applyisoxfm 2.000000
201113-00:23:38,366 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt".
201113-00:23:38,368 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt".
201113-00:23:38,379 nipype.workflow INFO:
[Node] Running "Anatomical_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -omat sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.mat -applyisoxfm 2.000000
201113-00:23:41,951 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt".
201113-00:23:41,953 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_FLIRT_0/_scan_tgng_run-3/linear_func_to_anat".
201113-00:23:41,978 nipype.workflow INFO:
[Node] Running "linear_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost corratio -dof 6 -interp trilinear
201113-00:23:48,20 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat".
201113-00:23:48,22 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_FLIRT_0/_scan_tgng_run-2/linear_func_to_anat".
201113-00:23:48,61 nipype.workflow INFO:
[Node] Running "linear_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost corratio -dof 6 -interp trilinear
201113-00:23:54,90 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat".
201113-00:23:54,92 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_FLIRT_0/_scan_tgng_run-1/linear_func_to_anat".
201113-00:23:54,113 nipype.workflow INFO:
[Node] Running "linear_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost corratio -dof 6 -interp trilinear
201113-00:24:00,545 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat".
201113-00:24:00,546 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_FLIRT_0/_scan_rest_run-1/linear_func_to_anat".
201113-00:24:00,573 nipype.workflow INFO:
[Node] Running "linear_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost corratio -dof 6 -interp trilinear
201113-00:24:10,335 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat".
201113-00:24:10,336 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_FLIRT_0/_scan_ms_run-1/linear_func_to_anat".
201113-00:24:10,347 nipype.workflow INFO:
[Node] Running "linear_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost corratio -dof 6 -interp trilinear
201113-00:24:16,644 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat".
201113-00:24:16,646 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_FLIRT_0/_scan_matching_run-3/linear_func_to_anat".
201113-00:24:16,656 nipype.workflow INFO:
[Node] Running "linear_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost corratio -dof 6 -interp trilinear
201113-00:24:23,166 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat".
201113-00:24:23,167 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_FLIRT_0/_scan_matching_run-2/linear_func_to_anat".
201113-00:24:23,178 nipype.workflow INFO:
[Node] Running "linear_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost corratio -dof 6 -interp trilinear
201113-00:24:29,483 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat".
201113-00:24:29,485 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_FLIRT_0/_scan_matching_run-1/linear_func_to_anat".
201113-00:24:29,493 nipype.workflow INFO:
[Node] Running "linear_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost corratio -dof 6 -interp trilinear
201113-00:24:35,441 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat".
201113-00:24:35,443 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_skullstrip_0.montage_skull.resample_u" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_skullstrip_0/montage_skull/resample_u".
201113-00:24:35,448 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:24:36,515 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_skullstrip_0.montage_skull.resample_u".
201113-00:24:36,517 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_skullstrip_0.montage_skull.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_skullstrip_0/montage_skull/montage_s".
201113-00:24:36,524 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_skullstrip_0/montage_skull/montage_s/mapflow/_montage_s0".
201113-00:24:36,530 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:24:39,44 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:24:39,47 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_skullstrip_0.montage_skull.montage_s".
201113-00:24:39,48 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___skullstrip_vis_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/sinker_0_qc___skullstrip_vis_s".
201113-00:24:39,56 nipype.workflow INFO:
[Node] Running "sinker_0_qc___skullstrip_vis_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:24:39,269 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___skullstrip_vis_s/_montage_s0/skull_vis_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/skullstrip_vis_s/_montage_s0/skull_vis_s.png
201113-00:24:39,286 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___skullstrip_vis_s".
201113-00:24:39,287 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_skullstrip_0.montage_skull.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_skullstrip_0/montage_skull/montage_a".
201113-00:24:39,295 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_skullstrip_0/montage_skull/montage_a/mapflow/_montage_a0".
201113-00:24:39,299 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:24:42,57 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:24:42,61 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_skullstrip_0.montage_skull.montage_a".
201113-00:24:42,61 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___skullstrip_vis_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/sinker_0_qc___skullstrip_vis_a".
201113-00:24:42,69 nipype.workflow INFO:
[Node] Running "sinker_0_qc___skullstrip_vis_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:24:42,280 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___skullstrip_vis_a/_montage_a0/skull_vis_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/skullstrip_vis_a/_montage_a0/skull_vis_a.png
201113-00:24:42,297 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___skullstrip_vis_a".
201113-00:24:42,299 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.resample_u" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/resample_u".
201113-00:24:42,303 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:24:43,350 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.resample_u".
201113-00:24:43,352 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_csf_gm_wm_0.resample_u" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_csf_gm_wm_0/resample_u".
201113-00:24:43,356 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:24:44,391 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_csf_gm_wm_0.resample_u".
201113-00:24:44,392 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.seg_preproc_0.segment" in "/outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/segment".
201113-00:24:44,400 nipype.workflow INFO:
[Node] Running "segment" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command:
fast -t 1 -o segment -p -g -S 1 /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/segment/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz
201113-00:29:14,452 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.seg_preproc_0.segment".
201113-00:29:14,454 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_to_anat_bbreg_0.wm_bb_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/wm_bb_mask".
201113-00:29:14,461 nipype.workflow INFO:
[Node] Running "wm_bb_mask" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/segment/segment_prob_2.nii.gz -thr 0.5 -bin /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz
201113-00:29:15,534 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_to_anat_bbreg_0.wm_bb_mask".
201113-00:29:15,535 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-3/bbreg_func_to_anat".
201113-00:29:15,545 nipype.workflow INFO:
[Node] Running "bbreg_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-128_ses-1_T1w_resample.nii.gz -out sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost bbr -wmseg /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz -dof 6 -init /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_FLIRT_0/_scan_tgng_run-3/linear_func_to_anat/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch
201113-00:31:29,871 nipype.interface INFO:
stdout 2020-11-13T00:31:29.871018:0.527226 0.999973 0.005883 0.004371 0.000000 -0.005885 0.999982 0.000470 0.000000 -0.004368 -0.000496 0.999990 0.000000 0.494257 -0.991250 2.640405 1.000000
201113-00:31:31,866 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat".
201113-00:31:31,868 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt".
201113-00:31:31,899 nipype.workflow INFO:
[Node] Running "Functional_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz -omat sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.mat -applyxfm -init /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-3/bbreg_func_to_anat/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:31:58,735 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt".
201113-00:31:58,736 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_tgng_run-3/resample_u".
201113-00:31:58,742 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:31:59,860 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.resample_u".
201113-00:31:59,862 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-3/std_dev_anat".
201113-00:31:59,887 nipype.workflow INFO:
[Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
applywarp --in=/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-3/std_dev/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz --ref=/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz --out=/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-3/std_dev_anat/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz --premat=/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-3/bbreg_func_to_anat/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat --interp=trilinear
201113-00:32:03,812 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev_anat".
201113-00:32:03,813 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-3/snr".
201113-00:32:03,819 nipype.workflow INFO:
[Node] Running "snr" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-3/std_dev_anat/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-3/bbreg_func_to_anat/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -expr "b/a" -prefix sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:32:04,64 nipype.interface INFO:
stderr 2020-11-13T00:32:04.064050:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:32:04,64 nipype.interface INFO:
stderr 2020-11-13T00:32:04.064397:++ Authored by: A cast of thousands
201113-00:32:06,69 nipype.interface INFO:
stderr 2020-11-13T00:32:06.069317:++ Output dataset ./sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:32:06,222 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.snr".
201113-00:32:06,223 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.dp_snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-3/dp_snr".
201113-00:32:06,228 nipype.workflow INFO:
[Node] Running "dp_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:32:07,127 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.dp_snr".
201113-00:32:07,129 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.resample_o" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-3/resample_o".
201113-00:32:07,133 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:32:08,194 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.resample_o".
201113-00:32:08,196 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-3/montage_s".
201113-00:32:08,202 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-3/montage_s/mapflow/_montage_s0".
201113-00:32:08,207 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:32:10,455 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:32:10,459 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_s".
201113-00:32:10,459 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_qc___snr_s".
201113-00:32:10,468 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:32:10,680 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_s/_scan_tgng_run-3/_montage_s0/snr_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_s/_scan_tgng_run-3/_montage_s0/snr_s.png
201113-00:32:10,696 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_s".
201113-00:32:10,698 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-3/montage_a".
201113-00:32:10,706 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-3/montage_a/mapflow/_montage_a0".
201113-00:32:10,710 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:32:13,222 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:32:13,225 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_a".
201113-00:32:13,225 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_qc___snr_a".
201113-00:32:13,232 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:32:13,442 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_a/_scan_tgng_run-3/_montage_a0/snr_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_a/_scan_tgng_run-3/_montage_a0/snr_a.png
201113-00:32:13,459 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_a".
201113-00:32:13,460 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.hist_snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-3/hist_snr".
201113-00:32:13,465 nipype.workflow INFO:
[Node] Running "hist_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:32:14,24 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.hist_snr".
201113-00:32:14,26 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_hist" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_qc___snr_hist".
201113-00:32:14,32 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_hist" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:32:14,241 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_hist/_scan_tgng_run-3/snr_hist_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_hist/_scan_tgng_run-3/snr_hist_plot.png
201113-00:32:14,261 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_hist".
201113-00:32:14,262 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.snr_val" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-3/snr_val".
201113-00:32:14,266 nipype.workflow INFO:
[Node] Running "snr_val" ("CPAC.utils.interfaces.function.Function")
201113-00:32:14,769 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.snr_val".
201113-00:32:14,770 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_val" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_qc___snr_val".
201113-00:32:14,777 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_val" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:32:14,989 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_val/_scan_tgng_run-3/average_snr_file.txt -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_val/_scan_tgng_run-3/average_snr_file.txt
201113-00:32:15,6 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_val".
201113-00:32:15,7 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_in_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_mean_functional_in_anat".
201113-00:32:15,15 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_in_anat" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:32:15,247 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_in_anat".
201113-00:32:15,249 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_anat_linear_xfm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_functional_to_anat_linear_xfm".
201113-00:32:15,257 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_anat_linear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:32:15,489 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_anat_linear_xfm".
201113-00:32:15,491 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_to_func_linear_xfm_0_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/anat_to_func_linear_xfm_0_0".
201113-00:32:15,497 nipype.workflow INFO:
[Node] Running "anat_to_func_linear_xfm_0_0" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/anat_to_func_linear_xfm_0_0/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt_inv.mat -inverse /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-3/bbreg_func_to_anat/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:32:15,930 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_to_func_linear_xfm_0_0".
201113-00:32:15,932 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.fsl_reg_2_itk_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/fsl_reg_2_itk_0".
201113-00:32:15,938 nipype.workflow INFO:
[Node] Running "fsl_reg_2_itk_0" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -src /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-3/bbreg_func_to_anat/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -fsl2ras -oitk /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/fsl_reg_2_itk_0/affine.txt
201113-00:32:16,572 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.fsl_reg_2_itk_0".
201113-00:32:16,574 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.change_transform_type_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/change_transform_type_0".
201113-00:32:16,578 nipype.workflow INFO:
[Node] Running "change_transform_type_0" ("nipype.interfaces.utility.wrappers.Function")
201113-00:32:16,807 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.change_transform_type_0".
201113-00:32:16,809 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-2/bbreg_func_to_anat".
201113-00:32:16,818 nipype.workflow INFO:
[Node] Running "bbreg_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-128_ses-1_T1w_resample.nii.gz -out sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost bbr -wmseg /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz -dof 6 -init /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_FLIRT_0/_scan_tgng_run-2/linear_func_to_anat/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch
201113-00:34:19,401 nipype.interface INFO:
stdout 2020-11-13T00:34:19.401695:0.534485 0.999969 0.001503 0.007777 0.000000 -0.001472 0.999991 -0.004067 0.000000 -0.007783 0.004056 0.999961 0.000000 0.388997 -1.281969 3.086899 1.000000
201113-00:34:21,400 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat".
201113-00:34:21,402 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt".
201113-00:34:21,431 nipype.workflow INFO:
[Node] Running "Functional_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz -omat sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.mat -applyxfm -init /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-2/bbreg_func_to_anat/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:34:48,290 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt".
201113-00:34:48,292 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_tgng_run-2/resample_u".
201113-00:34:48,298 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:34:49,432 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.resample_u".
201113-00:34:49,434 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-2/std_dev_anat".
201113-00:34:49,456 nipype.workflow INFO:
[Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
applywarp --in=/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-2/std_dev/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz --ref=/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz --out=/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-2/std_dev_anat/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz --premat=/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-2/bbreg_func_to_anat/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat --interp=trilinear
201113-00:34:53,342 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev_anat".
201113-00:34:53,343 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-2/snr".
201113-00:34:53,349 nipype.workflow INFO:
[Node] Running "snr" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-2/std_dev_anat/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-2/bbreg_func_to_anat/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -expr "b/a" -prefix sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:34:53,597 nipype.interface INFO:
stderr 2020-11-13T00:34:53.597856:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:34:53,598 nipype.interface INFO:
stderr 2020-11-13T00:34:53.598225:++ Authored by: A cast of thousands
201113-00:34:55,598 nipype.interface INFO:
stderr 2020-11-13T00:34:55.598566:++ Output dataset ./sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:34:55,752 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.snr".
201113-00:34:55,753 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.dp_snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-2/dp_snr".
201113-00:34:55,757 nipype.workflow INFO:
[Node] Running "dp_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:34:56,650 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.dp_snr".
201113-00:34:56,652 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.resample_o" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-2/resample_o".
201113-00:34:56,656 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:34:57,693 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.resample_o".
201113-00:34:57,694 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-2/montage_s".
201113-00:34:57,700 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-2/montage_s/mapflow/_montage_s0".
201113-00:34:57,705 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:34:59,936 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:34:59,940 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_s".
201113-00:34:59,941 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_qc___snr_s".
201113-00:34:59,951 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:35:00,162 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_s/_scan_tgng_run-2/_montage_s0/snr_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_s/_scan_tgng_run-2/_montage_s0/snr_s.png
201113-00:35:00,181 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_s".
201113-00:35:00,182 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-2/montage_a".
201113-00:35:00,188 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-2/montage_a/mapflow/_montage_a0".
201113-00:35:00,193 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:35:02,712 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:35:02,715 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_a".
201113-00:35:02,716 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_qc___snr_a".
201113-00:35:02,724 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:35:02,933 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_a/_scan_tgng_run-2/_montage_a0/snr_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_a/_scan_tgng_run-2/_montage_a0/snr_a.png
201113-00:35:02,951 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_a".
201113-00:35:02,953 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.hist_snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-2/hist_snr".
201113-00:35:02,959 nipype.workflow INFO:
[Node] Running "hist_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:35:03,523 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.hist_snr".
201113-00:35:03,524 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_hist" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_qc___snr_hist".
201113-00:35:03,531 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_hist" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:35:03,742 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_hist/_scan_tgng_run-2/snr_hist_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_hist/_scan_tgng_run-2/snr_hist_plot.png
201113-00:35:03,759 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_hist".
201113-00:35:03,761 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.snr_val" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-2/snr_val".
201113-00:35:03,765 nipype.workflow INFO:
[Node] Running "snr_val" ("CPAC.utils.interfaces.function.Function")
201113-00:35:04,271 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.snr_val".
201113-00:35:04,273 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_val" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_qc___snr_val".
201113-00:35:04,282 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_val" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:35:04,492 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_val/_scan_tgng_run-2/average_snr_file.txt -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_val/_scan_tgng_run-2/average_snr_file.txt
201113-00:35:04,510 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_val".
201113-00:35:04,512 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_in_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_mean_functional_in_anat".
201113-00:35:04,519 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_in_anat" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:35:04,749 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_in_anat".
201113-00:35:04,751 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_anat_linear_xfm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_functional_to_anat_linear_xfm".
201113-00:35:04,758 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_anat_linear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:35:04,990 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_anat_linear_xfm".
201113-00:35:04,992 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_to_func_linear_xfm_0_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/anat_to_func_linear_xfm_0_0".
201113-00:35:04,997 nipype.workflow INFO:
[Node] Running "anat_to_func_linear_xfm_0_0" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/anat_to_func_linear_xfm_0_0/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt_inv.mat -inverse /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-2/bbreg_func_to_anat/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:35:05,437 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_to_func_linear_xfm_0_0".
201113-00:35:05,439 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.fsl_reg_2_itk_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/fsl_reg_2_itk_0".
201113-00:35:05,445 nipype.workflow INFO:
[Node] Running "fsl_reg_2_itk_0" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -src /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-2/bbreg_func_to_anat/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -fsl2ras -oitk /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/fsl_reg_2_itk_0/affine.txt
201113-00:35:06,74 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.fsl_reg_2_itk_0".
201113-00:35:06,75 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.change_transform_type_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/change_transform_type_0".
201113-00:35:06,79 nipype.workflow INFO:
[Node] Running "change_transform_type_0" ("nipype.interfaces.utility.wrappers.Function")
201113-00:35:06,310 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.change_transform_type_0".
201113-00:35:06,311 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-1/bbreg_func_to_anat".
201113-00:35:06,321 nipype.workflow INFO:
[Node] Running "bbreg_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-128_ses-1_T1w_resample.nii.gz -out sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost bbr -wmseg /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz -dof 6 -init /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_FLIRT_0/_scan_tgng_run-1/linear_func_to_anat/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch
201113-00:37:23,114 nipype.interface INFO:
stdout 2020-11-13T00:37:23.114030:0.538257 0.999843 0.017599 0.001912 0.000000 -0.017595 0.999843 -0.002240 0.000000 -0.001951 0.002206 0.999996 0.000000 1.858182 -2.707790 3.309415 1.000000
201113-00:37:25,105 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat".
201113-00:37:25,107 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt".
201113-00:37:25,134 nipype.workflow INFO:
[Node] Running "Functional_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz -omat sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.mat -applyxfm -init /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-1/bbreg_func_to_anat/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:37:51,974 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt".
201113-00:37:51,976 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_tgng_run-1/resample_u".
201113-00:37:51,981 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:37:53,153 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.resample_u".
201113-00:37:53,154 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-1/std_dev_anat".
201113-00:37:53,181 nipype.workflow INFO:
[Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
applywarp --in=/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-1/std_dev/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz --ref=/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz --out=/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-1/std_dev_anat/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz --premat=/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-1/bbreg_func_to_anat/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat --interp=trilinear
201113-00:37:57,65 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev_anat".
201113-00:37:57,67 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-1/snr".
201113-00:37:57,73 nipype.workflow INFO:
[Node] Running "snr" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-1/std_dev_anat/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-1/bbreg_func_to_anat/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -expr "b/a" -prefix sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:37:57,316 nipype.interface INFO:
stderr 2020-11-13T00:37:57.316845:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:37:57,317 nipype.interface INFO:
stderr 2020-11-13T00:37:57.317183:++ Authored by: A cast of thousands
201113-00:37:59,330 nipype.interface INFO:
stderr 2020-11-13T00:37:59.330819:++ Output dataset ./sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:37:59,486 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.snr".
201113-00:37:59,487 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.dp_snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-1/dp_snr".
201113-00:37:59,492 nipype.workflow INFO:
[Node] Running "dp_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:38:00,389 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.dp_snr".
201113-00:38:00,391 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.resample_o" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-1/resample_o".
201113-00:38:00,395 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:38:01,444 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.resample_o".
201113-00:38:01,446 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-1/montage_s".
201113-00:38:01,452 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-1/montage_s/mapflow/_montage_s0".
201113-00:38:01,456 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:38:03,685 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:38:03,689 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_s".
201113-00:38:03,689 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_qc___snr_s".
201113-00:38:03,698 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:38:03,910 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_s/_scan_tgng_run-1/_montage_s0/snr_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_s/_scan_tgng_run-1/_montage_s0/snr_s.png
201113-00:38:03,927 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_s".
201113-00:38:03,928 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-1/montage_a".
201113-00:38:03,934 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-1/montage_a/mapflow/_montage_a0".
201113-00:38:03,939 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:38:06,476 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:38:06,480 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_a".
201113-00:38:06,480 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_qc___snr_a".
201113-00:38:06,487 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:38:06,700 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_a/_scan_tgng_run-1/_montage_a0/snr_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_a/_scan_tgng_run-1/_montage_a0/snr_a.png
201113-00:38:06,716 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_a".
201113-00:38:06,718 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.hist_snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-1/hist_snr".
201113-00:38:06,722 nipype.workflow INFO:
[Node] Running "hist_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:38:07,269 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.hist_snr".
201113-00:38:07,270 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_hist" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_qc___snr_hist".
201113-00:38:07,277 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_hist" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:38:07,489 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_hist/_scan_tgng_run-1/snr_hist_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_hist/_scan_tgng_run-1/snr_hist_plot.png
201113-00:38:07,509 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_hist".
201113-00:38:07,511 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.snr_val" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_tgng_run-1/snr_val".
201113-00:38:07,515 nipype.workflow INFO:
[Node] Running "snr_val" ("CPAC.utils.interfaces.function.Function")
201113-00:38:08,33 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.snr_val".
201113-00:38:08,34 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_val" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_qc___snr_val".
201113-00:38:08,42 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_val" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:38:08,251 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_val/_scan_tgng_run-1/average_snr_file.txt -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_val/_scan_tgng_run-1/average_snr_file.txt
201113-00:38:08,270 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_val".
201113-00:38:08,271 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_in_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_mean_functional_in_anat".
201113-00:38:08,278 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_in_anat" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:38:08,507 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_in_anat".
201113-00:38:08,509 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_anat_linear_xfm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_functional_to_anat_linear_xfm".
201113-00:38:08,515 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_anat_linear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:38:08,745 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_anat_linear_xfm".
201113-00:38:08,746 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_to_func_linear_xfm_0_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/anat_to_func_linear_xfm_0_0".
201113-00:38:08,752 nipype.workflow INFO:
[Node] Running "anat_to_func_linear_xfm_0_0" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/anat_to_func_linear_xfm_0_0/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt_inv.mat -inverse /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-1/bbreg_func_to_anat/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:38:09,186 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_to_func_linear_xfm_0_0".
201113-00:38:09,188 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.fsl_reg_2_itk_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/fsl_reg_2_itk_0".
201113-00:38:09,195 nipype.workflow INFO:
[Node] Running "fsl_reg_2_itk_0" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -src /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-1/bbreg_func_to_anat/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -fsl2ras -oitk /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/fsl_reg_2_itk_0/affine.txt
201113-00:38:09,822 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.fsl_reg_2_itk_0".
201113-00:38:09,824 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.change_transform_type_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/change_transform_type_0".
201113-00:38:09,828 nipype.workflow INFO:
[Node] Running "change_transform_type_0" ("nipype.interfaces.utility.wrappers.Function")
201113-00:38:10,58 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.change_transform_type_0".
201113-00:38:10,60 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_rest_run-1/bbreg_func_to_anat".
201113-00:38:10,69 nipype.workflow INFO:
[Node] Running "bbreg_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-128_ses-1_T1w_resample.nii.gz -out sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost bbr -wmseg /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz -dof 6 -init /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_FLIRT_0/_scan_rest_run-1/linear_func_to_anat/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch
201113-00:38:37,614 nipype.interface INFO:
stdout 2020-11-13T00:38:37.613964:Applying POWELL correction
201113-00:38:37,614 nipype.interface INFO:
stdout 2020-11-13T00:38:37.614452:finit, fend, fextrap = 0.683997 , 0.682416 , 0.682545
201113-00:38:37,619 nipype.interface INFO:
stdout 2020-11-13T00:38:37.619239:fval = 0.682351
201113-00:40:32,157 nipype.interface INFO:
stdout 2020-11-13T00:40:32.157755:0.660115 0.999157 0.030702 0.027266 0.000000 -0.031432 0.999147 0.026783 0.000000 -0.026420 -0.027618 0.999269 0.000000 5.310488 -0.453029 -1.453100 1.000000
201113-00:40:34,7 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat".
201113-00:40:34,9 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt".
201113-00:40:34,46 nipype.workflow INFO:
[Node] Running "Functional_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz -omat sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.mat -applyxfm -init /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_rest_run-1/bbreg_func_to_anat/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:41:07,176 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt".
201113-00:41:07,178 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_rest_run-1/resample_u".
201113-00:41:07,184 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:41:08,340 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.resample_u".
201113-00:41:08,342 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_rest_run-1/std_dev_anat".
201113-00:41:08,363 nipype.workflow INFO:
[Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
applywarp --in=/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_rest_run-1/std_dev/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz --ref=/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz --out=/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_rest_run-1/std_dev_anat/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz --premat=/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_rest_run-1/bbreg_func_to_anat/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat --interp=trilinear
201113-00:41:12,51 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev_anat".
201113-00:41:12,52 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_rest_run-1/snr".
201113-00:41:12,58 nipype.workflow INFO:
[Node] Running "snr" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_rest_run-1/std_dev_anat/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_rest_run-1/bbreg_func_to_anat/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -expr "b/a" -prefix sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:41:12,304 nipype.interface INFO:
stderr 2020-11-13T00:41:12.304027:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:41:12,304 nipype.interface INFO:
stderr 2020-11-13T00:41:12.304371:++ Authored by: A cast of thousands
201113-00:41:14,302 nipype.interface INFO:
stderr 2020-11-13T00:41:14.302514:++ Output dataset ./sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:41:14,458 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.snr".
201113-00:41:14,460 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.dp_snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_rest_run-1/dp_snr".
201113-00:41:14,464 nipype.workflow INFO:
[Node] Running "dp_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:41:15,353 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.dp_snr".
201113-00:41:15,354 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.resample_o" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_rest_run-1/resample_o".
201113-00:41:15,357 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:41:16,376 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.resample_o".
201113-00:41:16,377 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_rest_run-1/montage_s".
201113-00:41:16,384 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_rest_run-1/montage_s/mapflow/_montage_s0".
201113-00:41:16,388 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:41:18,612 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:41:18,615 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_s".
201113-00:41:18,615 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_qc___snr_s".
201113-00:41:18,624 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:41:18,838 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_s/_scan_rest_run-1/_montage_s0/snr_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_s/_scan_rest_run-1/_montage_s0/snr_s.png
201113-00:41:18,855 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_s".
201113-00:41:18,856 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_rest_run-1/montage_a".
201113-00:41:18,863 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_rest_run-1/montage_a/mapflow/_montage_a0".
201113-00:41:18,868 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:41:21,390 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:41:21,393 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_a".
201113-00:41:21,394 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_qc___snr_a".
201113-00:41:21,401 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:41:21,611 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_a/_scan_rest_run-1/_montage_a0/snr_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_a/_scan_rest_run-1/_montage_a0/snr_a.png
201113-00:41:21,628 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_a".
201113-00:41:21,629 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.hist_snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_rest_run-1/hist_snr".
201113-00:41:21,634 nipype.workflow INFO:
[Node] Running "hist_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:41:22,186 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.hist_snr".
201113-00:41:22,187 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_hist" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_qc___snr_hist".
201113-00:41:22,194 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_hist" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:41:22,402 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_hist/_scan_rest_run-1/snr_hist_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_hist/_scan_rest_run-1/snr_hist_plot.png
201113-00:41:22,420 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_hist".
201113-00:41:22,422 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.snr_val" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_rest_run-1/snr_val".
201113-00:41:22,426 nipype.workflow INFO:
[Node] Running "snr_val" ("CPAC.utils.interfaces.function.Function")
201113-00:41:22,927 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.snr_val".
201113-00:41:22,928 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_val" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_qc___snr_val".
201113-00:41:22,935 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_val" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:41:23,148 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_val/_scan_rest_run-1/average_snr_file.txt -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_val/_scan_rest_run-1/average_snr_file.txt
201113-00:41:23,168 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_val".
201113-00:41:23,170 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_in_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_mean_functional_in_anat".
201113-00:41:23,179 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_in_anat" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:41:23,409 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_in_anat".
201113-00:41:23,411 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_anat_linear_xfm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_functional_to_anat_linear_xfm".
201113-00:41:23,418 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_anat_linear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:41:23,649 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_anat_linear_xfm".
201113-00:41:23,650 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_to_func_linear_xfm_0_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/anat_to_func_linear_xfm_0_0".
201113-00:41:23,656 nipype.workflow INFO:
[Node] Running "anat_to_func_linear_xfm_0_0" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/anat_to_func_linear_xfm_0_0/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt_inv.mat -inverse /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_rest_run-1/bbreg_func_to_anat/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:41:24,94 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_to_func_linear_xfm_0_0".
201113-00:41:24,95 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.fsl_reg_2_itk_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/fsl_reg_2_itk_0".
201113-00:41:24,101 nipype.workflow INFO:
[Node] Running "fsl_reg_2_itk_0" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -src /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_rest_run-1/bbreg_func_to_anat/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -fsl2ras -oitk /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/fsl_reg_2_itk_0/affine.txt
201113-00:41:24,724 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.fsl_reg_2_itk_0".
201113-00:41:24,725 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.change_transform_type_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/change_transform_type_0".
201113-00:41:24,729 nipype.workflow INFO:
[Node] Running "change_transform_type_0" ("nipype.interfaces.utility.wrappers.Function")
201113-00:41:24,958 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.change_transform_type_0".
201113-00:41:24,959 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_ms_run-1/bbreg_func_to_anat".
201113-00:41:24,970 nipype.workflow INFO:
[Node] Running "bbreg_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-128_ses-1_T1w_resample.nii.gz -out sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost bbr -wmseg /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz -dof 6 -init /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_FLIRT_0/_scan_ms_run-1/linear_func_to_anat/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch
201113-00:43:43,650 nipype.interface INFO:
stdout 2020-11-13T00:43:43.650664:0.532145 0.999986 -0.000294 0.005337 0.000000 0.000335 0.999970 -0.007787 0.000000 -0.005335 0.007789 0.999955 0.000000 -0.290181 -1.785493 3.751537 1.000000
201113-00:43:45,644 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat".
201113-00:43:45,646 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt".
201113-00:43:45,680 nipype.workflow INFO:
[Node] Running "Functional_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz -omat sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.mat -applyxfm -init /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_ms_run-1/bbreg_func_to_anat/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:44:15,27 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt".
201113-00:44:15,29 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_ms_run-1/resample_u".
201113-00:44:15,35 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:44:16,204 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.resample_u".
201113-00:44:16,205 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_ms_run-1/std_dev_anat".
201113-00:44:16,245 nipype.workflow INFO:
[Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
applywarp --in=/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_ms_run-1/std_dev/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz --ref=/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz --out=/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_ms_run-1/std_dev_anat/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz --premat=/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_ms_run-1/bbreg_func_to_anat/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat --interp=trilinear
201113-00:44:20,116 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev_anat".
201113-00:44:20,118 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_ms_run-1/snr".
201113-00:44:20,124 nipype.workflow INFO:
[Node] Running "snr" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_ms_run-1/std_dev_anat/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_ms_run-1/bbreg_func_to_anat/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -expr "b/a" -prefix sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:44:20,368 nipype.interface INFO:
stderr 2020-11-13T00:44:20.368129:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:44:20,368 nipype.interface INFO:
stderr 2020-11-13T00:44:20.368494:++ Authored by: A cast of thousands
201113-00:44:22,387 nipype.interface INFO:
stderr 2020-11-13T00:44:22.387740:++ Output dataset ./sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:44:22,539 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.snr".
201113-00:44:22,541 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.dp_snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_ms_run-1/dp_snr".
201113-00:44:22,545 nipype.workflow INFO:
[Node] Running "dp_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:44:23,443 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.dp_snr".
201113-00:44:23,445 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.resample_o" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_ms_run-1/resample_o".
201113-00:44:23,449 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:44:24,512 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.resample_o".
201113-00:44:24,513 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_ms_run-1/montage_s".
201113-00:44:24,519 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_ms_run-1/montage_s/mapflow/_montage_s0".
201113-00:44:24,524 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:44:26,736 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:44:26,739 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_s".
201113-00:44:26,740 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_qc___snr_s".
201113-00:44:26,749 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:44:26,960 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_s/_scan_ms_run-1/_montage_s0/snr_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_s/_scan_ms_run-1/_montage_s0/snr_s.png
201113-00:44:26,976 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_s".
201113-00:44:26,978 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_ms_run-1/montage_a".
201113-00:44:26,984 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_ms_run-1/montage_a/mapflow/_montage_a0".
201113-00:44:26,988 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:44:29,511 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:44:29,515 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_a".
201113-00:44:29,515 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_qc___snr_a".
201113-00:44:29,523 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:44:29,732 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_a/_scan_ms_run-1/_montage_a0/snr_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_a/_scan_ms_run-1/_montage_a0/snr_a.png
201113-00:44:29,748 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_a".
201113-00:44:29,750 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.hist_snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_ms_run-1/hist_snr".
201113-00:44:29,754 nipype.workflow INFO:
[Node] Running "hist_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:44:30,310 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.hist_snr".
201113-00:44:30,312 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_hist" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_qc___snr_hist".
201113-00:44:30,318 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_hist" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:44:30,529 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_hist/_scan_ms_run-1/snr_hist_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_hist/_scan_ms_run-1/snr_hist_plot.png
201113-00:44:30,547 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_hist".
201113-00:44:30,549 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.snr_val" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_ms_run-1/snr_val".
201113-00:44:30,553 nipype.workflow INFO:
[Node] Running "snr_val" ("CPAC.utils.interfaces.function.Function")
201113-00:44:31,52 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.snr_val".
201113-00:44:31,53 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_val" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_qc___snr_val".
201113-00:44:31,61 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_val" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:44:31,271 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_val/_scan_ms_run-1/average_snr_file.txt -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_val/_scan_ms_run-1/average_snr_file.txt
201113-00:44:31,288 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_val".
201113-00:44:31,290 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_in_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_mean_functional_in_anat".
201113-00:44:31,297 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_in_anat" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:44:31,527 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_in_anat".
201113-00:44:31,529 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_anat_linear_xfm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_functional_to_anat_linear_xfm".
201113-00:44:31,537 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_anat_linear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:44:31,768 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_anat_linear_xfm".
201113-00:44:31,770 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_to_func_linear_xfm_0_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/anat_to_func_linear_xfm_0_0".
201113-00:44:31,775 nipype.workflow INFO:
[Node] Running "anat_to_func_linear_xfm_0_0" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/anat_to_func_linear_xfm_0_0/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt_inv.mat -inverse /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_ms_run-1/bbreg_func_to_anat/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:44:32,211 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_to_func_linear_xfm_0_0".
201113-00:44:32,213 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.fsl_reg_2_itk_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/fsl_reg_2_itk_0".
201113-00:44:32,220 nipype.workflow INFO:
[Node] Running "fsl_reg_2_itk_0" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -src /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_ms_run-1/bbreg_func_to_anat/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -fsl2ras -oitk /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/fsl_reg_2_itk_0/affine.txt
201113-00:44:32,845 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.fsl_reg_2_itk_0".
201113-00:44:32,846 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.change_transform_type_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/change_transform_type_0".
201113-00:44:32,851 nipype.workflow INFO:
[Node] Running "change_transform_type_0" ("nipype.interfaces.utility.wrappers.Function")
201113-00:44:33,85 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.change_transform_type_0".
201113-00:44:33,86 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_matching_run-3/bbreg_func_to_anat".
201113-00:44:33,96 nipype.workflow INFO:
[Node] Running "bbreg_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-128_ses-1_T1w_resample.nii.gz -out sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost bbr -wmseg /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz -dof 6 -init /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_FLIRT_0/_scan_matching_run-3/linear_func_to_anat/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch
201113-00:47:00,980 nipype.interface INFO:
stdout 2020-11-13T00:47:00.980122:0.538905 0.999627 -0.001618 0.027265 0.000000 0.001459 0.999982 0.005853 0.000000 -0.027274 -0.005811 0.999611 0.000000 2.479053 0.136207 0.071594 1.000000
201113-00:47:02,974 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat".
201113-00:47:02,976 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt".
201113-00:47:02,986 nipype.workflow INFO:
[Node] Running "Functional_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz -omat sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.mat -applyxfm -init /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_matching_run-3/bbreg_func_to_anat/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:47:23,428 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt".
201113-00:47:23,430 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_matching_run-3/resample_u".
201113-00:47:23,435 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:47:24,569 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.resample_u".
201113-00:47:24,570 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-3/std_dev_anat".
201113-00:47:24,608 nipype.workflow INFO:
[Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
applywarp --in=/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-3/std_dev/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz --ref=/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz --out=/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-3/std_dev_anat/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz --premat=/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_matching_run-3/bbreg_func_to_anat/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat --interp=trilinear
201113-00:47:28,477 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev_anat".
201113-00:47:28,479 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-3/snr".
201113-00:47:28,485 nipype.workflow INFO:
[Node] Running "snr" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-3/std_dev_anat/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_matching_run-3/bbreg_func_to_anat/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -expr "b/a" -prefix sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:47:28,732 nipype.interface INFO:
stderr 2020-11-13T00:47:28.732472:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:47:28,732 nipype.interface INFO:
stderr 2020-11-13T00:47:28.732799:++ Authored by: A cast of thousands
201113-00:47:30,751 nipype.interface INFO:
stderr 2020-11-13T00:47:30.750959:++ Output dataset ./sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:47:30,906 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.snr".
201113-00:47:30,908 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.dp_snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-3/dp_snr".
201113-00:47:30,913 nipype.workflow INFO:
[Node] Running "dp_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:47:31,806 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.dp_snr".
201113-00:47:31,807 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.resample_o" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_matching_run-3/resample_o".
201113-00:47:31,811 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:47:32,865 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.resample_o".
201113-00:47:32,867 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_matching_run-3/montage_s".
201113-00:47:32,873 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_matching_run-3/montage_s/mapflow/_montage_s0".
201113-00:47:32,878 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:47:35,105 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:47:35,109 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_s".
201113-00:47:35,109 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_qc___snr_s".
201113-00:47:35,118 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:47:35,330 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_s/_scan_matching_run-3/_montage_s0/snr_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_s/_scan_matching_run-3/_montage_s0/snr_s.png
201113-00:47:35,348 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_s".
201113-00:47:35,349 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_matching_run-3/montage_a".
201113-00:47:35,356 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_matching_run-3/montage_a/mapflow/_montage_a0".
201113-00:47:35,361 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:47:37,872 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:47:37,876 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_a".
201113-00:47:37,876 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_qc___snr_a".
201113-00:47:37,883 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:47:38,92 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_a/_scan_matching_run-3/_montage_a0/snr_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_a/_scan_matching_run-3/_montage_a0/snr_a.png
201113-00:47:38,110 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_a".
201113-00:47:38,112 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.hist_snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-3/hist_snr".
201113-00:47:38,116 nipype.workflow INFO:
[Node] Running "hist_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:47:38,687 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.hist_snr".
201113-00:47:38,689 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_hist" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_qc___snr_hist".
201113-00:47:38,697 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_hist" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:47:38,910 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_hist/_scan_matching_run-3/snr_hist_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_hist/_scan_matching_run-3/snr_hist_plot.png
201113-00:47:38,930 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_hist".
201113-00:47:38,931 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.snr_val" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-3/snr_val".
201113-00:47:38,935 nipype.workflow INFO:
[Node] Running "snr_val" ("CPAC.utils.interfaces.function.Function")
201113-00:47:39,443 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.snr_val".
201113-00:47:39,444 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_val" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_qc___snr_val".
201113-00:47:39,452 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_val" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:47:39,662 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_val/_scan_matching_run-3/average_snr_file.txt -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_val/_scan_matching_run-3/average_snr_file.txt
201113-00:47:39,680 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_val".
201113-00:47:39,682 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_in_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_mean_functional_in_anat".
201113-00:47:39,689 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_in_anat" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:47:39,919 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_in_anat".
201113-00:47:39,921 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_anat_linear_xfm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_functional_to_anat_linear_xfm".
201113-00:47:39,928 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_anat_linear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:47:40,163 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_anat_linear_xfm".
201113-00:47:40,164 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_to_func_linear_xfm_0_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/anat_to_func_linear_xfm_0_0".
201113-00:47:40,170 nipype.workflow INFO:
[Node] Running "anat_to_func_linear_xfm_0_0" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/anat_to_func_linear_xfm_0_0/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt_inv.mat -inverse /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_matching_run-3/bbreg_func_to_anat/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:47:40,600 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_to_func_linear_xfm_0_0".
201113-00:47:40,601 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.fsl_reg_2_itk_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/fsl_reg_2_itk_0".
201113-00:47:40,608 nipype.workflow INFO:
[Node] Running "fsl_reg_2_itk_0" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -src /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_matching_run-3/bbreg_func_to_anat/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -fsl2ras -oitk /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/fsl_reg_2_itk_0/affine.txt
201113-00:47:41,236 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.fsl_reg_2_itk_0".
201113-00:47:41,238 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.change_transform_type_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/change_transform_type_0".
201113-00:47:41,242 nipype.workflow INFO:
[Node] Running "change_transform_type_0" ("nipype.interfaces.utility.wrappers.Function")
201113-00:47:41,470 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.change_transform_type_0".
201113-00:47:41,472 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_matching_run-2/bbreg_func_to_anat".
201113-00:47:41,480 nipype.workflow INFO:
[Node] Running "bbreg_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-128_ses-1_T1w_resample.nii.gz -out sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost bbr -wmseg /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz -dof 6 -init /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_FLIRT_0/_scan_matching_run-2/linear_func_to_anat/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch
201113-00:49:48,743 nipype.interface INFO:
stdout 2020-11-13T00:49:48.743639:0.530276 0.999963 0.008197 0.002565 0.000000 -0.008190 0.999962 -0.002947 0.000000 -0.002589 0.002925 0.999992 0.000000 0.551937 -2.075161 3.599225 1.000000
201113-00:49:50,732 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat".
201113-00:49:50,735 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt".
201113-00:49:50,784 nipype.workflow INFO:
[Node] Running "Functional_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz -omat sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.mat -applyxfm -init /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_matching_run-2/bbreg_func_to_anat/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:50:11,239 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt".
201113-00:50:11,240 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_matching_run-2/resample_u".
201113-00:50:11,246 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:50:12,377 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.resample_u".
201113-00:50:12,379 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-2/std_dev_anat".
201113-00:50:12,412 nipype.workflow INFO:
[Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
applywarp --in=/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-2/std_dev/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz --ref=/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz --out=/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-2/std_dev_anat/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz --premat=/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_matching_run-2/bbreg_func_to_anat/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat --interp=trilinear
201113-00:50:16,280 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev_anat".
201113-00:50:16,282 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-2/snr".
201113-00:50:16,288 nipype.workflow INFO:
[Node] Running "snr" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-2/std_dev_anat/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_matching_run-2/bbreg_func_to_anat/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -expr "b/a" -prefix sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:50:16,535 nipype.interface INFO:
stderr 2020-11-13T00:50:16.535162:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:50:16,535 nipype.interface INFO:
stderr 2020-11-13T00:50:16.535544:++ Authored by: A cast of thousands
201113-00:50:18,555 nipype.interface INFO:
stderr 2020-11-13T00:50:18.555599:++ Output dataset ./sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:50:18,711 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.snr".
201113-00:50:18,713 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.dp_snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-2/dp_snr".
201113-00:50:18,719 nipype.workflow INFO:
[Node] Running "dp_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:50:19,606 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.dp_snr".
201113-00:50:19,608 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.resample_o" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_matching_run-2/resample_o".
201113-00:50:19,613 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:50:20,667 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.resample_o".
201113-00:50:20,668 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_matching_run-2/montage_s".
201113-00:50:20,675 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_matching_run-2/montage_s/mapflow/_montage_s0".
201113-00:50:20,679 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:50:22,894 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:50:22,897 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_s".
201113-00:50:22,897 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_qc___snr_s".
201113-00:50:22,905 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:50:23,118 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_s/_scan_matching_run-2/_montage_s0/snr_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_s/_scan_matching_run-2/_montage_s0/snr_s.png
201113-00:50:23,135 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_s".
201113-00:50:23,136 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_matching_run-2/montage_a".
201113-00:50:23,142 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_matching_run-2/montage_a/mapflow/_montage_a0".
201113-00:50:23,146 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:50:25,685 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:50:25,688 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_a".
201113-00:50:25,689 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_qc___snr_a".
201113-00:50:25,696 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:50:25,909 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_a/_scan_matching_run-2/_montage_a0/snr_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_a/_scan_matching_run-2/_montage_a0/snr_a.png
201113-00:50:25,925 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_a".
201113-00:50:25,927 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.hist_snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-2/hist_snr".
201113-00:50:25,931 nipype.workflow INFO:
[Node] Running "hist_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:50:26,482 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.hist_snr".
201113-00:50:26,484 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_hist" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_qc___snr_hist".
201113-00:50:26,491 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_hist" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:50:26,701 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_hist/_scan_matching_run-2/snr_hist_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_hist/_scan_matching_run-2/snr_hist_plot.png
201113-00:50:26,720 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_hist".
201113-00:50:26,721 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.snr_val" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-2/snr_val".
201113-00:50:26,726 nipype.workflow INFO:
[Node] Running "snr_val" ("CPAC.utils.interfaces.function.Function")
201113-00:50:27,231 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.snr_val".
201113-00:50:27,233 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_val" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_qc___snr_val".
201113-00:50:27,240 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_val" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:50:27,451 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_val/_scan_matching_run-2/average_snr_file.txt -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_val/_scan_matching_run-2/average_snr_file.txt
201113-00:50:27,469 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_val".
201113-00:50:27,471 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_in_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_mean_functional_in_anat".
201113-00:50:27,478 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_in_anat" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:50:27,709 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_in_anat".
201113-00:50:27,711 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_anat_linear_xfm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_functional_to_anat_linear_xfm".
201113-00:50:27,718 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_anat_linear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:50:27,948 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_anat_linear_xfm".
201113-00:50:27,950 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_to_func_linear_xfm_0_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/anat_to_func_linear_xfm_0_0".
201113-00:50:27,956 nipype.workflow INFO:
[Node] Running "anat_to_func_linear_xfm_0_0" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/anat_to_func_linear_xfm_0_0/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt_inv.mat -inverse /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_matching_run-2/bbreg_func_to_anat/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:50:28,402 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_to_func_linear_xfm_0_0".
201113-00:50:28,403 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.fsl_reg_2_itk_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/fsl_reg_2_itk_0".
201113-00:50:28,411 nipype.workflow INFO:
[Node] Running "fsl_reg_2_itk_0" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -src /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_matching_run-2/bbreg_func_to_anat/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -fsl2ras -oitk /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/fsl_reg_2_itk_0/affine.txt
201113-00:50:29,34 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.fsl_reg_2_itk_0".
201113-00:50:29,36 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.change_transform_type_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/change_transform_type_0".
201113-00:50:29,40 nipype.workflow INFO:
[Node] Running "change_transform_type_0" ("nipype.interfaces.utility.wrappers.Function")
201113-00:50:29,268 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.change_transform_type_0".
201113-00:50:29,270 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_matching_run-1/bbreg_func_to_anat".
201113-00:50:29,296 nipype.workflow INFO:
[Node] Running "bbreg_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-128_ses-1_T1w_resample.nii.gz -out sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost bbr -wmseg /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz -dof 6 -init /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_FLIRT_0/_scan_matching_run-1/linear_func_to_anat/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch
201113-00:52:42,724 nipype.interface INFO:
stdout 2020-11-13T00:52:42.723905:0.527075 0.999950 0.009477 0.003256 0.000000 -0.009471 0.999953 -0.001810 0.000000 -0.003273 0.001779 0.999993 0.000000 0.804388 -2.146639 3.332744 1.000000
201113-00:52:44,711 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat".
201113-00:52:44,714 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt".
201113-00:52:44,723 nipype.workflow INFO:
[Node] Running "Functional_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz -omat sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.mat -applyxfm -init /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_matching_run-1/bbreg_func_to_anat/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:53:05,152 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt".
201113-00:53:05,153 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_matching_run-1/resample_u".
201113-00:53:05,160 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:53:06,294 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.resample_u".
201113-00:53:06,295 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-1/std_dev_anat".
201113-00:53:06,303 nipype.workflow INFO:
[Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
applywarp --in=/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-1/std_dev/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz --ref=/outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz --out=/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-1/std_dev_anat/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz --premat=/outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_matching_run-1/bbreg_func_to_anat/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat --interp=trilinear
201113-00:53:10,146 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.std_dev_anat".
201113-00:53:10,148 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-1/snr".
201113-00:53:10,154 nipype.workflow INFO:
[Node] Running "snr" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-1/std_dev_anat/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_matching_run-1/bbreg_func_to_anat/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -expr "b/a" -prefix sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:53:10,397 nipype.interface INFO:
stderr 2020-11-13T00:53:10.397552:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:53:10,397 nipype.interface INFO:
stderr 2020-11-13T00:53:10.397911:++ Authored by: A cast of thousands
201113-00:53:12,422 nipype.interface INFO:
stderr 2020-11-13T00:53:12.422005:++ Output dataset ./sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:53:12,574 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.snr".
201113-00:53:12,575 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.dp_snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-1/dp_snr".
201113-00:53:12,580 nipype.workflow INFO:
[Node] Running "dp_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:53:13,478 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.dp_snr".
201113-00:53:13,480 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.resample_o" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_matching_run-1/resample_o".
201113-00:53:13,484 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:53:14,532 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.resample_o".
201113-00:53:14,534 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_matching_run-1/montage_s".
201113-00:53:14,540 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_matching_run-1/montage_s/mapflow/_montage_s0".
201113-00:53:14,545 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:53:16,776 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:53:16,780 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_s".
201113-00:53:16,780 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_qc___snr_s".
201113-00:53:16,787 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:53:16,999 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_s/_scan_matching_run-1/_montage_s0/snr_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_s/_scan_matching_run-1/_montage_s0/snr_s.png
201113-00:53:17,16 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_s".
201113-00:53:17,18 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_matching_run-1/montage_a".
201113-00:53:17,24 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/montage_snr/_scan_matching_run-1/montage_a/mapflow/_montage_a0".
201113-00:53:17,29 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:53:19,554 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:53:19,557 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.montage_snr.montage_a".
201113-00:53:19,557 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_qc___snr_a".
201113-00:53:19,564 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:53:19,777 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_a/_scan_matching_run-1/_montage_a0/snr_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_a/_scan_matching_run-1/_montage_a0/snr_a.png
201113-00:53:19,794 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_a".
201113-00:53:19,795 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.hist_snr" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-1/hist_snr".
201113-00:53:19,800 nipype.workflow INFO:
[Node] Running "hist_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:53:20,354 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.hist_snr".
201113-00:53:20,355 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_hist" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_qc___snr_hist".
201113-00:53:20,362 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_hist" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:53:20,571 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_hist/_scan_matching_run-1/snr_hist_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_hist/_scan_matching_run-1/snr_hist_plot.png
201113-00:53:20,590 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_hist".
201113-00:53:20,591 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.qc_snr_0.snr_val" in "/outputs/tmp/resting_preproc_sub-128_ses-1/qc_snr_0/_scan_matching_run-1/snr_val".
201113-00:53:20,595 nipype.workflow INFO:
[Node] Running "snr_val" ("CPAC.utils.interfaces.function.Function")
201113-00:53:21,93 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.qc_snr_0.snr_val".
201113-00:53:21,94 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_val" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_qc___snr_val".
201113-00:53:21,101 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_val" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:53:21,311 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___snr_val/_scan_matching_run-1/average_snr_file.txt -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/snr_val/_scan_matching_run-1/average_snr_file.txt
201113-00:53:21,329 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___snr_val".
201113-00:53:21,330 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_in_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_mean_functional_in_anat".
201113-00:53:21,338 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_in_anat" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:53:21,569 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_in_anat".
201113-00:53:21,571 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_anat_linear_xfm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_functional_to_anat_linear_xfm".
201113-00:53:21,578 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_anat_linear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:53:21,811 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_anat_linear_xfm".
201113-00:53:21,813 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_to_func_linear_xfm_0_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/anat_to_func_linear_xfm_0_0".
201113-00:53:21,819 nipype.workflow INFO:
[Node] Running "anat_to_func_linear_xfm_0_0" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/anat_to_func_linear_xfm_0_0/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt_inv.mat -inverse /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_matching_run-1/bbreg_func_to_anat/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:53:22,257 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_to_func_linear_xfm_0_0".
201113-00:53:22,259 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.fsl_reg_2_itk_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/fsl_reg_2_itk_0".
201113-00:53:22,266 nipype.workflow INFO:
[Node] Running "fsl_reg_2_itk_0" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz -src /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-1/func_to_anat_bbreg_0/_scan_matching_run-1/bbreg_func_to_anat/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -fsl2ras -oitk /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/fsl_reg_2_itk_0/affine.txt
201113-00:53:22,890 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.fsl_reg_2_itk_0".
201113-00:53:22,892 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.change_transform_type_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/change_transform_type_0".
201113-00:53:22,896 nipype.workflow INFO:
[Node] Running "change_transform_type_0" ("nipype.interfaces.utility.wrappers.Function")
201113-00:53:23,127 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.change_transform_type_0".
201113-00:53:23,129 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_seg_probability_maps" in "/outputs/tmp/resting_preproc_sub-128_ses-1/sinker_0_seg_probability_maps".
201113-00:53:23,136 nipype.workflow INFO:
[Node] Running "sinker_0_seg_probability_maps" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:53:23,370 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_seg_probability_maps".
201113-00:53:23,373 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_seg_partial_volume_map" in "/outputs/tmp/resting_preproc_sub-128_ses-1/sinker_0_seg_partial_volume_map".
201113-00:53:23,381 nipype.workflow INFO:
[Node] Running "sinker_0_seg_partial_volume_map" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:53:23,609 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_seg_partial_volume_map".
201113-00:53:23,611 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_seg_partial_volume_files" in "/outputs/tmp/resting_preproc_sub-128_ses-1/sinker_0_seg_partial_volume_files".
201113-00:53:23,618 nipype.workflow INFO:
[Node] Running "sinker_0_seg_partial_volume_files" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:53:23,848 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_seg_partial_volume_files".
201113-00:53:23,850 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_seg_mixeltype" in "/outputs/tmp/resting_preproc_sub-128_ses-1/sinker_0_seg_mixeltype".
201113-00:53:23,857 nipype.workflow INFO:
[Node] Running "sinker_0_seg_mixeltype" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:53:24,87 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_seg_mixeltype".
201113-00:53:24,89 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.seg_preproc_0.GM.threshold_segmentmap_GM" in "/outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/GM/threshold_segmentmap_GM".
201113-00:53:24,95 nipype.workflow INFO:
[Node] Running "threshold_segmentmap_GM" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/segment/segment_prob_1.nii.gz -thr 0.950000 /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/GM/threshold_segmentmap_GM/segment_prob_1_maths.nii.gz
201113-00:53:25,141 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.seg_preproc_0.GM.threshold_segmentmap_GM".
201113-00:53:25,143 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.seg_preproc_0.GM.binarize_GM" in "/outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/GM/binarize_GM".
201113-00:53:25,147 nipype.workflow INFO:
[Node] Running "binarize_GM" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/GM/threshold_segmentmap_GM/segment_prob_1_maths.nii.gz -bin /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/GM/binarize_GM/segment_prob_1_maths_maths.nii.gz
201113-00:53:26,166 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.seg_preproc_0.GM.binarize_GM".
201113-00:53:26,168 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_csf_gm_wm_0.resample_o_gm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_csf_gm_wm_0/resample_o_gm".
201113-00:53:26,172 nipype.workflow INFO:
[Node] Running "resample_o_gm" ("CPAC.utils.interfaces.function.Function")
201113-00:53:27,91 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_csf_gm_wm_0.resample_o_gm".
201113-00:53:27,93 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_anatomical_gm_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/sinker_0_anatomical_gm_mask".
201113-00:53:27,101 nipype.workflow INFO:
[Node] Running "sinker_0_anatomical_gm_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:53:27,329 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_anatomical_gm_mask".
201113-00:53:27,331 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.seg_preproc_0.WM.threshold_segmentmap_WM" in "/outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/WM/threshold_segmentmap_WM".
201113-00:53:27,337 nipype.workflow INFO:
[Node] Running "threshold_segmentmap_WM" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/segment/segment_prob_2.nii.gz -thr 0.950000 /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/WM/threshold_segmentmap_WM/segment_prob_2_maths.nii.gz
201113-00:53:28,410 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.seg_preproc_0.WM.threshold_segmentmap_WM".
201113-00:53:28,411 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.seg_preproc_0.WM.binarize_WM" in "/outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/WM/binarize_WM".
201113-00:53:28,416 nipype.workflow INFO:
[Node] Running "binarize_WM" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/WM/threshold_segmentmap_WM/segment_prob_2_maths.nii.gz -bin /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/WM/binarize_WM/segment_prob_2_maths_maths.nii.gz
201113-00:53:29,409 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.seg_preproc_0.WM.binarize_WM".
201113-00:53:29,410 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.seg_preproc_0.WM.erode_skullstrip_mask_WM" in "/outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/WM/erode_skullstrip_mask_WM".
201113-00:53:29,416 nipype.workflow INFO:
[Node] Running "erode_skullstrip_mask_WM" ("nipype.interfaces.utility.wrappers.Function")
201113-00:53:34,435 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.seg_preproc_0.WM.erode_skullstrip_mask_WM".
201113-00:53:34,436 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.seg_preproc_0.WM.erosion_segmentmap_WM" in "/outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM".
201113-00:53:34,441 nipype.workflow INFO:
[Node] Running "erosion_segmentmap_WM" ("nipype.interfaces.utility.wrappers.Function")
201113-00:53:35,642 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.seg_preproc_0.WM.erosion_segmentmap_WM".
201113-00:53:35,643 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_2mm_flirt".
201113-00:53:35,651 nipype.workflow INFO:
[Node] Running "WhiteMatter_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:53:36,433 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt".
201113-00:53:36,435 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_merge_masks".
201113-00:53:36,439 nipype.workflow INFO:
[Node] Running "WhiteMatter_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:53:36,666 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks".
201113-00:53:36,667 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks".
201113-00:53:36,673 nipype.workflow INFO:
[Node] Running "WhiteMatter_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:53:36,926 nipype.interface INFO:
stderr 2020-11-13T00:53:36.926656:++ no -frac option: defaulting to -union
201113-00:53:36,927 nipype.interface INFO:
stderr 2020-11-13T00:53:36.927048:++ processing 1 input dataset(s), NN=2...
201113-00:53:36,927 nipype.interface INFO:
stderr 2020-11-13T00:53:36.927208:++ padding all datasets by 0 (for dilations)
201113-00:53:36,966 nipype.interface INFO:
stderr 2020-11-13T00:53:36.966886:++ frac 0 over 1 volumes gives min count 0
201113-00:53:36,968 nipype.interface INFO:
stderr 2020-11-13T00:53:36.968500:++ voxel limits: 0 clipped, 6191 survived, 1550289 were zero
201113-00:53:36,968 nipype.interface INFO:
stderr 2020-11-13T00:53:36.968676:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:53:36,988 nipype.interface INFO:
stderr 2020-11-13T00:53:36.988195:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:53:37,144 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks".
201113-00:53:37,145 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_mean".
201113-00:53:37,150 nipype.workflow INFO:
[Node] Running "WhiteMatter_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:53:40,959 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_mean".
201113-00:53:40,961 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_2mm_flirt".
201113-00:53:40,967 nipype.workflow INFO:
[Node] Running "WhiteMatter_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:53:41,725 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt".
201113-00:53:41,726 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_merge_masks".
201113-00:53:41,731 nipype.workflow INFO:
[Node] Running "WhiteMatter_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:53:41,962 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks".
201113-00:53:41,963 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks".
201113-00:53:41,968 nipype.workflow INFO:
[Node] Running "WhiteMatter_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:53:42,228 nipype.interface INFO:
stderr 2020-11-13T00:53:42.228214:++ no -frac option: defaulting to -union
201113-00:53:42,229 nipype.interface INFO:
stderr 2020-11-13T00:53:42.229019:++ processing 1 input dataset(s), NN=2...
201113-00:53:42,229 nipype.interface INFO:
stderr 2020-11-13T00:53:42.229320:++ padding all datasets by 0 (for dilations)
201113-00:53:42,269 nipype.interface INFO:
stderr 2020-11-13T00:53:42.269154:++ frac 0 over 1 volumes gives min count 0
201113-00:53:42,271 nipype.interface INFO:
stderr 2020-11-13T00:53:42.271014:++ voxel limits: 0 clipped, 6191 survived, 1550289 were zero
201113-00:53:42,271 nipype.interface INFO:
stderr 2020-11-13T00:53:42.271192:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:53:42,291 nipype.interface INFO:
stderr 2020-11-13T00:53:42.290974:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:53:42,448 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks".
201113-00:53:42,450 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_mean".
201113-00:53:42,456 nipype.workflow INFO:
[Node] Running "WhiteMatter_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:53:46,236 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_mean".
201113-00:53:46,237 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_2mm_flirt".
201113-00:53:46,245 nipype.workflow INFO:
[Node] Running "WhiteMatter_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:53:46,997 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt".
201113-00:53:46,999 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_merge_masks".
201113-00:53:47,3 nipype.workflow INFO:
[Node] Running "WhiteMatter_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:53:47,229 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks".
201113-00:53:47,231 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks".
201113-00:53:47,236 nipype.workflow INFO:
[Node] Running "WhiteMatter_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:53:47,492 nipype.interface INFO:
stderr 2020-11-13T00:53:47.492885:++ no -frac option: defaulting to -union
201113-00:53:47,493 nipype.interface INFO:
stderr 2020-11-13T00:53:47.493249:++ processing 1 input dataset(s), NN=2...
201113-00:53:47,493 nipype.interface INFO:
stderr 2020-11-13T00:53:47.493666:++ padding all datasets by 0 (for dilations)
201113-00:53:47,533 nipype.interface INFO:
stderr 2020-11-13T00:53:47.533350:++ frac 0 over 1 volumes gives min count 0
201113-00:53:47,534 nipype.interface INFO:
stderr 2020-11-13T00:53:47.534965:++ voxel limits: 0 clipped, 6191 survived, 1550289 were zero
201113-00:53:47,535 nipype.interface INFO:
stderr 2020-11-13T00:53:47.535143:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:53:47,554 nipype.interface INFO:
stderr 2020-11-13T00:53:47.554314:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:53:47,708 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks".
201113-00:53:47,710 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_mean".
201113-00:53:47,716 nipype.workflow INFO:
[Node] Running "WhiteMatter_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:53:51,521 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_mean".
201113-00:53:51,523 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_2mm_flirt".
201113-00:53:51,529 nipype.workflow INFO:
[Node] Running "WhiteMatter_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:53:52,286 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt".
201113-00:53:52,288 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_merge_masks".
201113-00:53:52,292 nipype.workflow INFO:
[Node] Running "WhiteMatter_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:53:52,521 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks".
201113-00:53:52,523 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks".
201113-00:53:52,528 nipype.workflow INFO:
[Node] Running "WhiteMatter_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:53:52,787 nipype.interface INFO:
stderr 2020-11-13T00:53:52.787219:++ no -frac option: defaulting to -union
201113-00:53:52,787 nipype.interface INFO:
stderr 2020-11-13T00:53:52.787906:++ processing 1 input dataset(s), NN=2...
201113-00:53:52,788 nipype.interface INFO:
stderr 2020-11-13T00:53:52.788193:++ padding all datasets by 0 (for dilations)
201113-00:53:52,827 nipype.interface INFO:
stderr 2020-11-13T00:53:52.827305:++ frac 0 over 1 volumes gives min count 0
201113-00:53:52,828 nipype.interface INFO:
stderr 2020-11-13T00:53:52.828921:++ voxel limits: 0 clipped, 6191 survived, 1550289 were zero
201113-00:53:52,829 nipype.interface INFO:
stderr 2020-11-13T00:53:52.829098:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:53:52,848 nipype.interface INFO:
stderr 2020-11-13T00:53:52.848790:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:53:53,5 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks".
201113-00:53:53,6 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_mean".
201113-00:53:53,14 nipype.workflow INFO:
[Node] Running "WhiteMatter_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:53:58,286 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_mean".
201113-00:53:58,288 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_2mm_flirt".
201113-00:53:58,296 nipype.workflow INFO:
[Node] Running "WhiteMatter_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:53:59,52 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt".
201113-00:53:59,54 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_merge_masks".
201113-00:53:59,58 nipype.workflow INFO:
[Node] Running "WhiteMatter_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:53:59,286 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks".
201113-00:53:59,288 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks".
201113-00:53:59,294 nipype.workflow INFO:
[Node] Running "WhiteMatter_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:53:59,546 nipype.interface INFO:
stderr 2020-11-13T00:53:59.546906:++ no -frac option: defaulting to -union
201113-00:53:59,547 nipype.interface INFO:
stderr 2020-11-13T00:53:59.547255:++ processing 1 input dataset(s), NN=2...
201113-00:53:59,547 nipype.interface INFO:
stderr 2020-11-13T00:53:59.547782:++ padding all datasets by 0 (for dilations)
201113-00:53:59,586 nipype.interface INFO:
stderr 2020-11-13T00:53:59.586703:++ frac 0 over 1 volumes gives min count 0
201113-00:53:59,588 nipype.interface INFO:
stderr 2020-11-13T00:53:59.588306:++ voxel limits: 0 clipped, 6191 survived, 1550289 were zero
201113-00:53:59,588 nipype.interface INFO:
stderr 2020-11-13T00:53:59.588682:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:53:59,607 nipype.interface INFO:
stderr 2020-11-13T00:53:59.607451:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:53:59,760 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks".
201113-00:53:59,762 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_mean".
201113-00:53:59,769 nipype.workflow INFO:
[Node] Running "WhiteMatter_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:54:06,323 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_mean".
201113-00:54:06,325 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_2mm_flirt".
201113-00:54:06,332 nipype.workflow INFO:
[Node] Running "WhiteMatter_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:54:07,91 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt".
201113-00:54:07,93 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_merge_masks".
201113-00:54:07,97 nipype.workflow INFO:
[Node] Running "WhiteMatter_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:54:07,326 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks".
201113-00:54:07,328 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks".
201113-00:54:07,334 nipype.workflow INFO:
[Node] Running "WhiteMatter_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:54:07,598 nipype.interface INFO:
stderr 2020-11-13T00:54:07.597964:++ no -frac option: defaulting to -union
201113-00:54:07,598 nipype.interface INFO:
stderr 2020-11-13T00:54:07.598446:++ processing 1 input dataset(s), NN=2...
201113-00:54:07,598 nipype.interface INFO:
stderr 2020-11-13T00:54:07.598616:++ padding all datasets by 0 (for dilations)
201113-00:54:07,634 nipype.interface INFO:
stderr 2020-11-13T00:54:07.634366:++ frac 0 over 1 volumes gives min count 0
201113-00:54:07,635 nipype.interface INFO:
stderr 2020-11-13T00:54:07.635976:++ voxel limits: 0 clipped, 6191 survived, 1550289 were zero
201113-00:54:07,636 nipype.interface INFO:
stderr 2020-11-13T00:54:07.636152:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:54:07,654 nipype.interface INFO:
stderr 2020-11-13T00:54:07.654656:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:54:07,814 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks".
201113-00:54:07,816 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_mean".
201113-00:54:07,822 nipype.workflow INFO:
[Node] Running "WhiteMatter_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:54:12,649 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_mean".
201113-00:54:12,651 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_2mm_flirt".
201113-00:54:12,660 nipype.workflow INFO:
[Node] Running "WhiteMatter_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:54:13,449 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt".
201113-00:54:13,451 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_merge_masks".
201113-00:54:13,455 nipype.workflow INFO:
[Node] Running "WhiteMatter_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:54:13,685 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks".
201113-00:54:13,686 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks".
201113-00:54:13,692 nipype.workflow INFO:
[Node] Running "WhiteMatter_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:54:13,945 nipype.interface INFO:
stderr 2020-11-13T00:54:13.945364:++ no -frac option: defaulting to -union
201113-00:54:13,946 nipype.interface INFO:
stderr 2020-11-13T00:54:13.945970:++ processing 1 input dataset(s), NN=2...
201113-00:54:13,946 nipype.interface INFO:
stderr 2020-11-13T00:54:13.946198:++ padding all datasets by 0 (for dilations)
201113-00:54:13,984 nipype.interface INFO:
stderr 2020-11-13T00:54:13.984010:++ frac 0 over 1 volumes gives min count 0
201113-00:54:13,985 nipype.interface INFO:
stderr 2020-11-13T00:54:13.985616:++ voxel limits: 0 clipped, 6191 survived, 1550289 were zero
201113-00:54:13,985 nipype.interface INFO:
stderr 2020-11-13T00:54:13.985789:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:54:14,3 nipype.interface INFO:
stderr 2020-11-13T00:54:14.003918:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:54:14,157 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks".
201113-00:54:14,159 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_mean".
201113-00:54:14,164 nipype.workflow INFO:
[Node] Running "WhiteMatter_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:54:19,15 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_mean".
201113-00:54:19,16 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_2mm_flirt".
201113-00:54:19,24 nipype.workflow INFO:
[Node] Running "WhiteMatter_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:54:19,778 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt".
201113-00:54:19,780 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_merge_masks".
201113-00:54:19,785 nipype.workflow INFO:
[Node] Running "WhiteMatter_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:54:20,14 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks".
201113-00:54:20,15 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks".
201113-00:54:20,20 nipype.workflow INFO:
[Node] Running "WhiteMatter_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:54:20,274 nipype.interface INFO:
stderr 2020-11-13T00:54:20.274634:++ no -frac option: defaulting to -union
201113-00:54:20,275 nipype.interface INFO:
stderr 2020-11-13T00:54:20.275091:++ processing 1 input dataset(s), NN=2...
201113-00:54:20,275 nipype.interface INFO:
stderr 2020-11-13T00:54:20.275321:++ padding all datasets by 0 (for dilations)
201113-00:54:20,315 nipype.interface INFO:
stderr 2020-11-13T00:54:20.315959:++ frac 0 over 1 volumes gives min count 0
201113-00:54:20,317 nipype.interface INFO:
stderr 2020-11-13T00:54:20.317683:++ voxel limits: 0 clipped, 6191 survived, 1550289 were zero
201113-00:54:20,317 nipype.interface INFO:
stderr 2020-11-13T00:54:20.317910:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:54:20,339 nipype.interface INFO:
stderr 2020-11-13T00:54:20.339370:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:54:20,497 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks".
201113-00:54:20,499 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_mean".
201113-00:54:20,506 nipype.workflow INFO:
[Node] Running "WhiteMatter_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:54:25,330 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.WhiteMatter_mean".
201113-00:54:25,331 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_csf_gm_wm_0.resample_o_wm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_csf_gm_wm_0/resample_o_wm".
201113-00:54:25,335 nipype.workflow INFO:
[Node] Running "resample_o_wm" ("CPAC.utils.interfaces.function.Function")
201113-00:54:26,120 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_csf_gm_wm_0.resample_o_wm".
201113-00:54:26,121 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_anatomical_wm_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/sinker_0_anatomical_wm_mask".
201113-00:54:26,128 nipype.workflow INFO:
[Node] Running "sinker_0_anatomical_wm_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:54:26,361 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_anatomical_wm_mask".
201113-00:54:26,363 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.seg_preproc_0.CSF.threshold_segmentmap_CSF" in "/outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/CSF/threshold_segmentmap_CSF".
201113-00:54:26,368 nipype.workflow INFO:
[Node] Running "threshold_segmentmap_CSF" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/segment/segment_prob_0.nii.gz -thr 0.950000 /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/CSF/threshold_segmentmap_CSF/segment_prob_0_maths.nii.gz
201113-00:54:27,372 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.seg_preproc_0.CSF.threshold_segmentmap_CSF".
201113-00:54:27,373 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.seg_preproc_0.CSF.binarize_CSF" in "/outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/CSF/binarize_CSF".
201113-00:54:27,379 nipype.workflow INFO:
[Node] Running "binarize_CSF" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/CSF/threshold_segmentmap_CSF/segment_prob_0_maths.nii.gz -bin /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/CSF/binarize_CSF/segment_prob_0_maths_maths.nii.gz
201113-00:54:28,364 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.seg_preproc_0.CSF.binarize_CSF".
201113-00:54:28,365 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.erode_skullstrip_brain_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/erode_skullstrip_brain_mask".
201113-00:54:28,370 nipype.workflow INFO:
[Node] Running "erode_skullstrip_brain_mask" ("nipype.interfaces.utility.wrappers.Function")
201113-00:54:29,824 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.erode_skullstrip_brain_mask".
201113-00:54:29,825 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.seg_preproc_0.CSF.erode_skullstrip_mask_CSF" in "/outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/CSF/erode_skullstrip_mask_CSF".
201113-00:54:29,830 nipype.workflow INFO:
[Node] Running "erode_skullstrip_mask_CSF" ("nipype.interfaces.utility.wrappers.Function")
201113-00:54:31,286 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.seg_preproc_0.CSF.erode_skullstrip_mask_CSF".
201113-00:54:31,288 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.seg_preproc_0.CSF.erosion_segmentmap_CSF" in "/outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF".
201113-00:54:31,293 nipype.workflow INFO:
[Node] Running "erosion_segmentmap_CSF" ("nipype.interfaces.utility.wrappers.Function")
201113-00:54:31,856 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.seg_preproc_0.CSF.erosion_segmentmap_CSF".
201113-00:54:31,858 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_2mm_flirt".
201113-00:54:31,865 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:54:32,641 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt".
201113-00:54:32,643 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_merge_masks".
201113-00:54:32,647 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:54:32,876 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks".
201113-00:54:32,877 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks".
201113-00:54:32,884 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:54:33,138 nipype.interface INFO:
stderr 2020-11-13T00:54:33.138116:++ no -frac option: defaulting to -union
201113-00:54:33,138 nipype.interface INFO:
stderr 2020-11-13T00:54:33.138753:++ processing 1 input dataset(s), NN=2...
201113-00:54:33,139 nipype.interface INFO:
stderr 2020-11-13T00:54:33.139038:++ padding all datasets by 0 (for dilations)
201113-00:54:33,178 nipype.interface INFO:
stderr 2020-11-13T00:54:33.178249:++ frac 0 over 1 volumes gives min count 0
201113-00:54:33,179 nipype.interface INFO:
stderr 2020-11-13T00:54:33.179820:++ voxel limits: 0 clipped, 1225 survived, 1555255 were zero
201113-00:54:33,180 nipype.interface INFO:
stderr 2020-11-13T00:54:33.180014:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:54:33,198 nipype.interface INFO:
stderr 2020-11-13T00:54:33.198504:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:54:33,358 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks".
201113-00:54:33,360 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_mean".
201113-00:54:33,366 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:54:37,140 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean".
201113-00:54:37,141 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.build_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors".
201113-00:54:37,175 nipype.workflow INFO:
[Node] Running "build_nuisance_regressors" ("CPAC.utils.interfaces.function.Function")
201113-00:54:37,427 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.build_nuisance_regressors".
201113-00:54:37,429 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_before-filt_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:54:37,455 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_before-filt_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
201113-00:54:37,743 nipype.interface INFO:
stderr 2020-11-13T00:54:37.743158:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:54:37,743 nipype.interface INFO:
stderr 2020-11-13T00:54:37.743673:++ Authored by: Cox the Algebraic (Linear)
201113-00:54:38,112 nipype.interface INFO:
stderr 2020-11-13T00:54:38.112389:++ Setting up regressors
201113-00:54:38,112 nipype.interface INFO:
stderr 2020-11-13T00:54:38.112708:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:54:38,112 nipype.interface INFO:
stderr 2020-11-13T00:54:38.112861: + -- 36 other fixed ort regressors
201113-00:54:38,113 nipype.interface INFO:
stderr 2020-11-13T00:54:38.113004:++ 99 retained time points MINUS 39 regressors ==> 60 D.O.F. left
201113-00:54:38,113 nipype.interface INFO:
stderr 2020-11-13T00:54:38.113526:++ 36215 voxels in the spatial mask
201113-00:54:38,113 nipype.interface INFO:
stderr 2020-11-13T00:54:38.113696:++ Compute pseudo-inverse of fixed orts
201113-00:54:38,116 nipype.interface INFO:
stderr 2020-11-13T00:54:38.116068:++ Loading dataset
201113-00:54:38,149 nipype.interface INFO:
stderr 2020-11-13T00:54:38.149651:++ Starting project-orization
201113-00:54:38,382 nipype.interface INFO:
stderr 2020-11-13T00:54:38.382205:++ Convert results to output dataset
201113-00:54:39,394 nipype.interface INFO:
stderr 2020-11-13T00:54:39.394111:++ Output dataset ./residuals.nii.gz
201113-00:54:39,394 nipype.interface INFO:
stderr 2020-11-13T00:54:39.394665:++ ===== clock time = 1s 651ms
201113-00:54:39,583 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression".
201113-00:54:39,585 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.frequency_filtering_0_0.frequency_filter" in "/outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter".
201113-00:54:39,592 nipype.workflow INFO:
[Node] Running "frequency_filter" ("CPAC.utils.interfaces.function.Function")
201113-00:54:44,497 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.frequency_filtering_0_0.frequency_filter".
201113-00:54:44,499 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:54:44,508 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/bandpassed_demeaned_filtered.nii.gz -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/regressor_bandpassed_demeaned_filtered.1D -polort 2 -prefix residuals.nii.gz
201113-00:54:44,763 nipype.interface INFO:
stderr 2020-11-13T00:54:44.763153:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:54:44,763 nipype.interface INFO:
stderr 2020-11-13T00:54:44.763816:++ Authored by: Cox the Algebraic (Linear)
201113-00:54:45,62 nipype.interface INFO:
stderr 2020-11-13T00:54:45.062282:++ Setting up regressors
201113-00:54:45,62 nipype.interface INFO:
stderr 2020-11-13T00:54:45.062611:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:54:45,62 nipype.interface INFO:
stderr 2020-11-13T00:54:45.062765: + -- 36 other fixed ort regressors
201113-00:54:45,62 nipype.interface INFO:
stderr 2020-11-13T00:54:45.062913:++ 99 retained time points MINUS 39 regressors ==> 60 D.O.F. left
201113-00:54:45,63 nipype.interface INFO:
stderr 2020-11-13T00:54:45.063428:++ 36215 voxels in the spatial mask
201113-00:54:45,63 nipype.interface INFO:
stderr 2020-11-13T00:54:45.063598:++ Compute pseudo-inverse of fixed orts
201113-00:54:45,64 nipype.interface INFO:
stderr 2020-11-13T00:54:45.064800:++ Loading dataset
201113-00:54:45,98 nipype.interface INFO:
stderr 2020-11-13T00:54:45.098511:++ Starting project-orization
201113-00:54:45,330 nipype.interface INFO:
stderr 2020-11-13T00:54:45.330374:++ Convert results to output dataset
201113-00:54:46,408 nipype.interface INFO:
stderr 2020-11-13T00:54:46.406332:++ Output dataset ./residuals.nii.gz
201113-00:54:46,409 nipype.interface INFO:
stderr 2020-11-13T00:54:46.409211:++ ===== clock time = 1s 645ms
201113-00:54:46,593 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression".
201113-00:54:46,594 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_residuals" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_residuals".
201113-00:54:46,602 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_residuals" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:54:46,830 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_residuals".
201113-00:54:46,832 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_freq_filtered" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_freq_filtered".
201113-00:54:46,840 nipype.workflow INFO:
[Node] Running "sinker_0_functional_freq_filtered" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:54:47,68 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_freq_filtered".
201113-00:54:47,70 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_regressors".
201113-00:54:47,77 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_regressors" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:54:47,309 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_regressors".
201113-00:54:47,311 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_2mm_flirt".
201113-00:54:47,318 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:54:48,72 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt".
201113-00:54:48,74 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_merge_masks".
201113-00:54:48,78 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:54:48,307 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks".
201113-00:54:48,308 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks".
201113-00:54:48,320 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:54:48,578 nipype.interface INFO:
stderr 2020-11-13T00:54:48.578082:++ no -frac option: defaulting to -union
201113-00:54:48,578 nipype.interface INFO:
stderr 2020-11-13T00:54:48.578825:++ processing 1 input dataset(s), NN=2...
201113-00:54:48,579 nipype.interface INFO:
stderr 2020-11-13T00:54:48.579071:++ padding all datasets by 0 (for dilations)
201113-00:54:48,618 nipype.interface INFO:
stderr 2020-11-13T00:54:48.618183:++ frac 0 over 1 volumes gives min count 0
201113-00:54:48,619 nipype.interface INFO:
stderr 2020-11-13T00:54:48.619763:++ voxel limits: 0 clipped, 1225 survived, 1555255 were zero
201113-00:54:48,619 nipype.interface INFO:
stderr 2020-11-13T00:54:48.619951:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:54:48,638 nipype.interface INFO:
stderr 2020-11-13T00:54:48.638361:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:54:48,795 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks".
201113-00:54:48,796 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_mean".
201113-00:54:48,802 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:54:52,599 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean".
201113-00:54:52,601 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.build_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors".
201113-00:54:52,627 nipype.workflow INFO:
[Node] Running "build_nuisance_regressors" ("CPAC.utils.interfaces.function.Function")
201113-00:54:52,884 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.build_nuisance_regressors".
201113-00:54:52,885 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_before-filt_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:54:52,917 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_before-filt_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
201113-00:54:53,170 nipype.interface INFO:
stderr 2020-11-13T00:54:53.170903:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:54:53,171 nipype.interface INFO:
stderr 2020-11-13T00:54:53.171253:++ Authored by: Cox the Algebraic (Linear)
201113-00:54:53,502 nipype.interface INFO:
stderr 2020-11-13T00:54:53.502388:++ Setting up regressors
201113-00:54:53,502 nipype.interface INFO:
stderr 2020-11-13T00:54:53.502708:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:54:53,502 nipype.interface INFO:
stderr 2020-11-13T00:54:53.502860: + -- 36 other fixed ort regressors
201113-00:54:53,503 nipype.interface INFO:
stderr 2020-11-13T00:54:53.503003:++ 99 retained time points MINUS 39 regressors ==> 60 D.O.F. left
201113-00:54:53,503 nipype.interface INFO:
stderr 2020-11-13T00:54:53.503525:++ 36240 voxels in the spatial mask
201113-00:54:53,503 nipype.interface INFO:
stderr 2020-11-13T00:54:53.503697:++ Compute pseudo-inverse of fixed orts
201113-00:54:53,505 nipype.interface INFO:
stderr 2020-11-13T00:54:53.505229:++ Loading dataset
201113-00:54:53,540 nipype.interface INFO:
stderr 2020-11-13T00:54:53.540120:++ Starting project-orization
201113-00:54:53,770 nipype.interface INFO:
stderr 2020-11-13T00:54:53.770120:++ Convert results to output dataset
201113-00:54:54,815 nipype.interface INFO:
stderr 2020-11-13T00:54:54.815301:++ Output dataset ./residuals.nii.gz
201113-00:54:54,815 nipype.interface INFO:
stderr 2020-11-13T00:54:54.815820:++ ===== clock time = 1s 644ms
201113-00:54:54,999 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression".
201113-00:54:55,1 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.frequency_filtering_0_0.frequency_filter" in "/outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter".
201113-00:54:55,8 nipype.workflow INFO:
[Node] Running "frequency_filter" ("CPAC.utils.interfaces.function.Function")
201113-00:54:59,952 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.frequency_filtering_0_0.frequency_filter".
201113-00:54:59,954 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:54:59,963 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/bandpassed_demeaned_filtered.nii.gz -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/regressor_bandpassed_demeaned_filtered.1D -polort 2 -prefix residuals.nii.gz
201113-00:55:00,223 nipype.interface INFO:
stderr 2020-11-13T00:55:00.223269:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:55:00,224 nipype.interface INFO:
stderr 2020-11-13T00:55:00.223983:++ Authored by: Cox the Algebraic (Linear)
201113-00:55:00,527 nipype.interface INFO:
stderr 2020-11-13T00:55:00.527595:++ Setting up regressors
201113-00:55:00,527 nipype.interface INFO:
stderr 2020-11-13T00:55:00.527916:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:55:00,528 nipype.interface INFO:
stderr 2020-11-13T00:55:00.528068: + -- 36 other fixed ort regressors
201113-00:55:00,528 nipype.interface INFO:
stderr 2020-11-13T00:55:00.528212:++ 99 retained time points MINUS 39 regressors ==> 60 D.O.F. left
201113-00:55:00,528 nipype.interface INFO:
stderr 2020-11-13T00:55:00.528733:++ 36240 voxels in the spatial mask
201113-00:55:00,528 nipype.interface INFO:
stderr 2020-11-13T00:55:00.528903:++ Compute pseudo-inverse of fixed orts
201113-00:55:00,530 nipype.interface INFO:
stderr 2020-11-13T00:55:00.530104:++ Loading dataset
201113-00:55:00,564 nipype.interface INFO:
stderr 2020-11-13T00:55:00.564593:++ Starting project-orization
201113-00:55:00,794 nipype.interface INFO:
stderr 2020-11-13T00:55:00.794152:++ Convert results to output dataset
201113-00:55:01,877 nipype.interface INFO:
stderr 2020-11-13T00:55:01.877810:++ Output dataset ./residuals.nii.gz
201113-00:55:01,878 nipype.interface INFO:
stderr 2020-11-13T00:55:01.878352:++ ===== clock time = 1s 654ms
201113-00:55:02,59 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression".
201113-00:55:02,61 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_residuals" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_residuals".
201113-00:55:02,69 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_residuals" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:55:02,298 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_residuals".
201113-00:55:02,299 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_freq_filtered" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_freq_filtered".
201113-00:55:02,306 nipype.workflow INFO:
[Node] Running "sinker_0_functional_freq_filtered" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:55:02,538 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_freq_filtered".
201113-00:55:02,540 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_regressors".
201113-00:55:02,547 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_regressors" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:55:02,779 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_regressors".
201113-00:55:02,780 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_2mm_flirt".
201113-00:55:02,788 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:55:03,544 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt".
201113-00:55:03,546 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_merge_masks".
201113-00:55:03,550 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:55:03,777 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks".
201113-00:55:03,778 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks".
201113-00:55:03,785 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:55:04,40 nipype.interface INFO:
stderr 2020-11-13T00:55:04.040511:++ no -frac option: defaulting to -union
201113-00:55:04,40 nipype.interface INFO:
stderr 2020-11-13T00:55:04.040861:++ processing 1 input dataset(s), NN=2...
201113-00:55:04,41 nipype.interface INFO:
stderr 2020-11-13T00:55:04.041023:++ padding all datasets by 0 (for dilations)
201113-00:55:04,77 nipype.interface INFO:
stderr 2020-11-13T00:55:04.077896:++ frac 0 over 1 volumes gives min count 0
201113-00:55:04,79 nipype.interface INFO:
stderr 2020-11-13T00:55:04.079645:++ voxel limits: 0 clipped, 1225 survived, 1555255 were zero
201113-00:55:04,79 nipype.interface INFO:
stderr 2020-11-13T00:55:04.079845:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:55:04,99 nipype.interface INFO:
stderr 2020-11-13T00:55:04.099001:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:55:04,254 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks".
201113-00:55:04,255 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_mean".
201113-00:55:04,261 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:55:08,33 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean".
201113-00:55:08,34 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.build_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors".
201113-00:55:08,89 nipype.workflow INFO:
[Node] Running "build_nuisance_regressors" ("CPAC.utils.interfaces.function.Function")
201113-00:55:08,362 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.build_nuisance_regressors".
201113-00:55:08,364 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_before-filt_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:55:08,384 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_before-filt_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
201113-00:55:08,644 nipype.interface INFO:
stderr 2020-11-13T00:55:08.644298:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:55:08,645 nipype.interface INFO:
stderr 2020-11-13T00:55:08.645027:++ Authored by: Cox the Algebraic (Linear)
201113-00:55:08,999 nipype.interface INFO:
stderr 2020-11-13T00:55:08.999336:++ Setting up regressors
201113-00:55:08,999 nipype.interface INFO:
stderr 2020-11-13T00:55:08.999662:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:55:08,999 nipype.interface INFO:
stderr 2020-11-13T00:55:08.999815: + -- 36 other fixed ort regressors
201113-00:55:08,999 nipype.interface INFO:
stderr 2020-11-13T00:55:08.999960:++ 99 retained time points MINUS 39 regressors ==> 60 D.O.F. left
201113-00:55:09,0 nipype.interface INFO:
stderr 2020-11-13T00:55:09.000481:++ 36206 voxels in the spatial mask
201113-00:55:09,0 nipype.interface INFO:
stderr 2020-11-13T00:55:09.000653:++ Compute pseudo-inverse of fixed orts
201113-00:55:09,1 nipype.interface INFO:
stderr 2020-11-13T00:55:09.001922:++ Loading dataset
201113-00:55:09,35 nipype.interface INFO:
stderr 2020-11-13T00:55:09.035802:++ Starting project-orization
201113-00:55:09,265 nipype.interface INFO:
stderr 2020-11-13T00:55:09.265916:++ Convert results to output dataset
201113-00:55:10,273 nipype.interface INFO:
stderr 2020-11-13T00:55:10.273252:++ Output dataset ./residuals.nii.gz
201113-00:55:10,273 nipype.interface INFO:
stderr 2020-11-13T00:55:10.273830:++ ===== clock time = 1s 628ms
201113-00:55:10,461 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression".
201113-00:55:10,463 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.frequency_filtering_0_0.frequency_filter" in "/outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter".
201113-00:55:10,469 nipype.workflow INFO:
[Node] Running "frequency_filter" ("CPAC.utils.interfaces.function.Function")
201113-00:55:15,481 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.frequency_filtering_0_0.frequency_filter".
201113-00:55:15,483 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:55:15,490 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/bandpassed_demeaned_filtered.nii.gz -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/regressor_bandpassed_demeaned_filtered.1D -polort 2 -prefix residuals.nii.gz
201113-00:55:15,742 nipype.interface INFO:
stderr 2020-11-13T00:55:15.742224:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:55:15,742 nipype.interface INFO:
stderr 2020-11-13T00:55:15.742910:++ Authored by: Cox the Algebraic (Linear)
201113-00:55:16,41 nipype.interface INFO:
stderr 2020-11-13T00:55:16.041101:++ Setting up regressors
201113-00:55:16,41 nipype.interface INFO:
stderr 2020-11-13T00:55:16.041434:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:55:16,41 nipype.interface INFO:
stderr 2020-11-13T00:55:16.041585: + -- 36 other fixed ort regressors
201113-00:55:16,41 nipype.interface INFO:
stderr 2020-11-13T00:55:16.041732:++ 99 retained time points MINUS 39 regressors ==> 60 D.O.F. left
201113-00:55:16,42 nipype.interface INFO:
stderr 2020-11-13T00:55:16.042259:++ 36206 voxels in the spatial mask
201113-00:55:16,42 nipype.interface INFO:
stderr 2020-11-13T00:55:16.042433:++ Compute pseudo-inverse of fixed orts
201113-00:55:16,43 nipype.interface INFO:
stderr 2020-11-13T00:55:16.043633:++ Loading dataset
201113-00:55:16,77 nipype.interface INFO:
stderr 2020-11-13T00:55:16.077446:++ Starting project-orization
201113-00:55:16,307 nipype.interface INFO:
stderr 2020-11-13T00:55:16.307427:++ Convert results to output dataset
201113-00:55:17,380 nipype.interface INFO:
stderr 2020-11-13T00:55:17.380631:++ Output dataset ./residuals.nii.gz
201113-00:55:17,381 nipype.interface INFO:
stderr 2020-11-13T00:55:17.381060:++ ===== clock time = 1s 638ms
201113-00:55:17,566 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression".
201113-00:55:17,568 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_residuals" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_residuals".
201113-00:55:17,576 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_residuals" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:55:17,805 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_residuals".
201113-00:55:17,806 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_freq_filtered" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_freq_filtered".
201113-00:55:17,812 nipype.workflow INFO:
[Node] Running "sinker_0_functional_freq_filtered" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:55:18,42 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_freq_filtered".
201113-00:55:18,44 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_regressors".
201113-00:55:18,51 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_regressors" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:55:18,281 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_regressors".
201113-00:55:18,283 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_2mm_flirt".
201113-00:55:18,291 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:55:19,57 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt".
201113-00:55:19,59 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_merge_masks".
201113-00:55:19,64 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:55:19,290 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks".
201113-00:55:19,292 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks".
201113-00:55:19,299 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:55:19,559 nipype.interface INFO:
stderr 2020-11-13T00:55:19.559345:++ no -frac option: defaulting to -union
201113-00:55:19,560 nipype.interface INFO:
stderr 2020-11-13T00:55:19.560088:++ processing 1 input dataset(s), NN=2...
201113-00:55:19,560 nipype.interface INFO:
stderr 2020-11-13T00:55:19.560354:++ padding all datasets by 0 (for dilations)
201113-00:55:19,599 nipype.interface INFO:
stderr 2020-11-13T00:55:19.599260:++ frac 0 over 1 volumes gives min count 0
201113-00:55:19,600 nipype.interface INFO:
stderr 2020-11-13T00:55:19.600850:++ voxel limits: 0 clipped, 1225 survived, 1555255 were zero
201113-00:55:19,601 nipype.interface INFO:
stderr 2020-11-13T00:55:19.601040:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:55:19,619 nipype.interface INFO:
stderr 2020-11-13T00:55:19.619402:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:55:19,777 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks".
201113-00:55:19,779 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_mean".
201113-00:55:19,785 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:55:25,49 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean".
201113-00:55:25,51 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.build_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors".
201113-00:55:25,113 nipype.workflow INFO:
[Node] Running "build_nuisance_regressors" ("CPAC.utils.interfaces.function.Function")
201113-00:55:25,394 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.build_nuisance_regressors".
201113-00:55:25,396 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_before-filt_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:55:25,425 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_before-filt_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
201113-00:55:25,683 nipype.interface INFO:
stderr 2020-11-13T00:55:25.683612:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:55:25,684 nipype.interface INFO:
stderr 2020-11-13T00:55:25.684091:++ Authored by: Cox the Algebraic (Linear)
201113-00:55:26,186 nipype.interface INFO:
stderr 2020-11-13T00:55:26.186786:++ Setting up regressors
201113-00:55:26,187 nipype.interface INFO:
stderr 2020-11-13T00:55:26.187108:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:55:26,187 nipype.interface INFO:
stderr 2020-11-13T00:55:26.187260: + -- 36 other fixed ort regressors
201113-00:55:26,187 nipype.interface INFO:
stderr 2020-11-13T00:55:26.187417:++ 143 retained time points MINUS 39 regressors ==> 104 D.O.F. left
201113-00:55:26,187 nipype.interface INFO:
stderr 2020-11-13T00:55:26.187930:++ 36194 voxels in the spatial mask
201113-00:55:26,188 nipype.interface INFO:
stderr 2020-11-13T00:55:26.188106:++ Compute pseudo-inverse of fixed orts
201113-00:55:26,189 nipype.interface INFO:
stderr 2020-11-13T00:55:26.189791:++ Loading dataset
201113-00:55:26,244 nipype.interface INFO:
stderr 2020-11-13T00:55:26.244735:++ Starting project-orization
201113-00:55:26,564 nipype.interface INFO:
stderr 2020-11-13T00:55:26.564056:++ Convert results to output dataset
201113-00:55:28,16 nipype.interface INFO:
stderr 2020-11-13T00:55:28.016800:++ Output dataset ./residuals.nii.gz
201113-00:55:28,17 nipype.interface INFO:
stderr 2020-11-13T00:55:28.017270:++ ===== clock time = 2s 333ms
201113-00:55:28,206 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression".
201113-00:55:28,208 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.frequency_filtering_0_0.frequency_filter" in "/outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter".
201113-00:55:28,215 nipype.workflow INFO:
[Node] Running "frequency_filter" ("CPAC.utils.interfaces.function.Function")
201113-00:55:33,865 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.frequency_filtering_0_0.frequency_filter".
201113-00:55:33,866 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:55:33,875 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/bandpassed_demeaned_filtered.nii.gz -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/regressor_bandpassed_demeaned_filtered.1D -polort 2 -prefix residuals.nii.gz
201113-00:55:34,131 nipype.interface INFO:
stderr 2020-11-13T00:55:34.131693:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:55:34,132 nipype.interface INFO:
stderr 2020-11-13T00:55:34.132137:++ Authored by: Cox the Algebraic (Linear)
201113-00:55:34,558 nipype.interface INFO:
stderr 2020-11-13T00:55:34.558489:++ Setting up regressors
201113-00:55:34,558 nipype.interface INFO:
stderr 2020-11-13T00:55:34.558818:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:55:34,558 nipype.interface INFO:
stderr 2020-11-13T00:55:34.558972: + -- 36 other fixed ort regressors
201113-00:55:34,559 nipype.interface INFO:
stderr 2020-11-13T00:55:34.559118:++ 143 retained time points MINUS 39 regressors ==> 104 D.O.F. left
201113-00:55:34,559 nipype.interface INFO:
stderr 2020-11-13T00:55:34.559631:++ 36194 voxels in the spatial mask
201113-00:55:34,559 nipype.interface INFO:
stderr 2020-11-13T00:55:34.559806:++ Compute pseudo-inverse of fixed orts
201113-00:55:34,561 nipype.interface INFO:
stderr 2020-11-13T00:55:34.561454:++ Loading dataset
201113-00:55:34,616 nipype.interface INFO:
stderr 2020-11-13T00:55:34.616543:++ Starting project-orization
201113-00:55:34,935 nipype.interface INFO:
stderr 2020-11-13T00:55:34.935712:++ Convert results to output dataset
201113-00:55:36,447 nipype.interface INFO:
stderr 2020-11-13T00:55:36.447240:++ Output dataset ./residuals.nii.gz
201113-00:55:36,448 nipype.interface INFO:
stderr 2020-11-13T00:55:36.447975:++ ===== clock time = 2s 316ms
201113-00:55:36,635 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression".
201113-00:55:36,637 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_residuals" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_residuals".
201113-00:55:36,645 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_residuals" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:55:36,875 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_residuals".
201113-00:55:36,877 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_freq_filtered" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_freq_filtered".
201113-00:55:36,883 nipype.workflow INFO:
[Node] Running "sinker_0_functional_freq_filtered" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:55:37,110 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_freq_filtered".
201113-00:55:37,112 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_regressors".
201113-00:55:37,119 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_regressors" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:55:37,351 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_regressors".
201113-00:55:37,352 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_2mm_flirt".
201113-00:55:37,361 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:55:38,132 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt".
201113-00:55:38,134 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_merge_masks".
201113-00:55:38,138 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:55:38,370 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks".
201113-00:55:38,371 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks".
201113-00:55:38,377 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:55:38,627 nipype.interface INFO:
stderr 2020-11-13T00:55:38.627896:++ no -frac option: defaulting to -union
201113-00:55:38,628 nipype.interface INFO:
stderr 2020-11-13T00:55:38.628263:++ processing 1 input dataset(s), NN=2...
201113-00:55:38,628 nipype.interface INFO:
stderr 2020-11-13T00:55:38.628446:++ padding all datasets by 0 (for dilations)
201113-00:55:38,662 nipype.interface INFO:
stderr 2020-11-13T00:55:38.662893:++ frac 0 over 1 volumes gives min count 0
201113-00:55:38,664 nipype.interface INFO:
stderr 2020-11-13T00:55:38.664728:++ voxel limits: 0 clipped, 1225 survived, 1555255 were zero
201113-00:55:38,664 nipype.interface INFO:
stderr 2020-11-13T00:55:38.664908:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:55:38,681 nipype.interface INFO:
stderr 2020-11-13T00:55:38.681129:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:55:38,839 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks".
201113-00:55:38,841 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_mean".
201113-00:55:38,847 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:55:45,352 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean".
201113-00:55:45,353 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.build_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors".
201113-00:55:45,394 nipype.workflow INFO:
[Node] Running "build_nuisance_regressors" ("CPAC.utils.interfaces.function.Function")
201113-00:55:45,746 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.build_nuisance_regressors".
201113-00:55:45,747 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_before-filt_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:55:45,779 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_before-filt_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
201113-00:55:46,37 nipype.interface INFO:
stderr 2020-11-13T00:55:46.037792:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:55:46,38 nipype.interface INFO:
stderr 2020-11-13T00:55:46.038162:++ Authored by: Cox the Algebraic (Linear)
201113-00:55:46,607 nipype.interface INFO:
stderr 2020-11-13T00:55:46.607096:++ Setting up regressors
201113-00:55:46,607 nipype.interface INFO:
stderr 2020-11-13T00:55:46.607429:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:55:46,607 nipype.interface INFO:
stderr 2020-11-13T00:55:46.607585: + -- 36 other fixed ort regressors
201113-00:55:46,607 nipype.interface INFO:
stderr 2020-11-13T00:55:46.607731:++ 180 retained time points MINUS 39 regressors ==> 141 D.O.F. left
201113-00:55:46,608 nipype.interface INFO:
stderr 2020-11-13T00:55:46.608251:++ 21259 voxels in the spatial mask
201113-00:55:46,608 nipype.interface INFO:
stderr 2020-11-13T00:55:46.608445:++ Compute pseudo-inverse of fixed orts
201113-00:55:46,610 nipype.interface INFO:
stderr 2020-11-13T00:55:46.610460:++ Loading dataset
201113-00:55:46,647 nipype.interface INFO:
stderr 2020-11-13T00:55:46.647500:++ Starting project-orization
201113-00:55:46,880 nipype.interface INFO:
stderr 2020-11-13T00:55:46.880396:++ Convert results to output dataset
201113-00:55:48,190 nipype.interface INFO:
stderr 2020-11-13T00:55:48.189892:++ Output dataset ./residuals.nii.gz
201113-00:55:48,190 nipype.interface INFO:
stderr 2020-11-13T00:55:48.190375:++ ===== clock time = 2s 152ms
201113-00:55:48,385 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression".
201113-00:55:48,387 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.frequency_filtering_0_0.frequency_filter" in "/outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter".
201113-00:55:48,393 nipype.workflow INFO:
[Node] Running "frequency_filter" ("CPAC.utils.interfaces.function.Function")
201113-00:55:52,372 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.frequency_filtering_0_0.frequency_filter".
201113-00:55:52,373 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:55:52,380 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/bandpassed_demeaned_filtered.nii.gz -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/regressor_bandpassed_demeaned_filtered.1D -polort 2 -prefix residuals.nii.gz
201113-00:55:52,632 nipype.interface INFO:
stderr 2020-11-13T00:55:52.632294:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:55:52,632 nipype.interface INFO:
stderr 2020-11-13T00:55:52.632952:++ Authored by: Cox the Algebraic (Linear)
201113-00:55:53,92 nipype.interface INFO:
stderr 2020-11-13T00:55:53.092054:++ Setting up regressors
201113-00:55:53,92 nipype.interface INFO:
stderr 2020-11-13T00:55:53.092390:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:55:53,92 nipype.interface INFO:
stderr 2020-11-13T00:55:53.092547: + -- 36 other fixed ort regressors
201113-00:55:53,92 nipype.interface INFO:
stderr 2020-11-13T00:55:53.092696:++ 180 retained time points MINUS 39 regressors ==> 141 D.O.F. left
201113-00:55:53,93 nipype.interface INFO:
stderr 2020-11-13T00:55:53.093227:++ 21259 voxels in the spatial mask
201113-00:55:53,93 nipype.interface INFO:
stderr 2020-11-13T00:55:53.093418:++ Compute pseudo-inverse of fixed orts
201113-00:55:53,95 nipype.interface INFO:
stderr 2020-11-13T00:55:53.095451:++ Loading dataset
201113-00:55:53,132 nipype.interface INFO:
stderr 2020-11-13T00:55:53.132490:++ Starting project-orization
201113-00:55:53,367 nipype.interface INFO:
stderr 2020-11-13T00:55:53.367949:++ Convert results to output dataset
201113-00:55:54,721 nipype.interface INFO:
stderr 2020-11-13T00:55:54.721700:++ Output dataset ./residuals.nii.gz
201113-00:55:54,722 nipype.interface INFO:
stderr 2020-11-13T00:55:54.722156:++ ===== clock time = 2s 89ms
201113-00:55:54,908 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression".
201113-00:55:54,910 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_residuals" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_residuals".
201113-00:55:54,919 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_residuals" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:55:55,146 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_residuals".
201113-00:55:55,148 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_freq_filtered" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_freq_filtered".
201113-00:55:55,155 nipype.workflow INFO:
[Node] Running "sinker_0_functional_freq_filtered" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:55:55,386 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_freq_filtered".
201113-00:55:55,387 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_regressors".
201113-00:55:55,394 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_regressors" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:55:55,622 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_regressors".
201113-00:55:55,624 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_2mm_flirt".
201113-00:55:55,630 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:55:56,388 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt".
201113-00:55:56,390 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_merge_masks".
201113-00:55:56,395 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:55:56,624 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks".
201113-00:55:56,626 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks".
201113-00:55:56,631 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:55:56,923 nipype.interface INFO:
stderr 2020-11-13T00:55:56.923479:++ no -frac option: defaulting to -union
201113-00:55:56,923 nipype.interface INFO:
stderr 2020-11-13T00:55:56.923833:++ processing 1 input dataset(s), NN=2...
201113-00:55:56,924 nipype.interface INFO:
stderr 2020-11-13T00:55:56.923994:++ padding all datasets by 0 (for dilations)
201113-00:55:56,960 nipype.interface INFO:
stderr 2020-11-13T00:55:56.960789:++ frac 0 over 1 volumes gives min count 0
201113-00:55:56,962 nipype.interface INFO:
stderr 2020-11-13T00:55:56.962348:++ voxel limits: 0 clipped, 1225 survived, 1555255 were zero
201113-00:55:56,962 nipype.interface INFO:
stderr 2020-11-13T00:55:56.962521:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:55:56,977 nipype.interface INFO:
stderr 2020-11-13T00:55:56.977962:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:55:57,136 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks".
201113-00:55:57,138 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_mean".
201113-00:55:57,144 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:56:01,987 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean".
201113-00:56:01,989 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.build_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors".
201113-00:56:02,50 nipype.workflow INFO:
[Node] Running "build_nuisance_regressors" ("CPAC.utils.interfaces.function.Function")
201113-00:56:02,323 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.build_nuisance_regressors".
201113-00:56:02,324 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_before-filt_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:56:02,349 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_before-filt_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
201113-00:56:02,611 nipype.interface INFO:
stderr 2020-11-13T00:56:02.610900:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:56:02,611 nipype.interface INFO:
stderr 2020-11-13T00:56:02.611668:++ Authored by: Cox the Algebraic (Linear)
201113-00:56:03,56 nipype.interface INFO:
stderr 2020-11-13T00:56:03.056244:++ Setting up regressors
201113-00:56:03,56 nipype.interface INFO:
stderr 2020-11-13T00:56:03.056576:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:56:03,56 nipype.interface INFO:
stderr 2020-11-13T00:56:03.056729: + -- 36 other fixed ort regressors
201113-00:56:03,56 nipype.interface INFO:
stderr 2020-11-13T00:56:03.056874:++ 130 retained time points MINUS 39 regressors ==> 91 D.O.F. left
201113-00:56:03,57 nipype.interface INFO:
stderr 2020-11-13T00:56:03.057401:++ 36196 voxels in the spatial mask
201113-00:56:03,57 nipype.interface INFO:
stderr 2020-11-13T00:56:03.057578:++ Compute pseudo-inverse of fixed orts
201113-00:56:03,59 nipype.interface INFO:
stderr 2020-11-13T00:56:03.059128:++ Loading dataset
201113-00:56:03,105 nipype.interface INFO:
stderr 2020-11-13T00:56:03.105911:++ Starting project-orization
201113-00:56:03,403 nipype.interface INFO:
stderr 2020-11-13T00:56:03.403369:++ Convert results to output dataset
201113-00:56:04,740 nipype.interface INFO:
stderr 2020-11-13T00:56:04.740072:++ Output dataset ./residuals.nii.gz
201113-00:56:04,740 nipype.interface INFO:
stderr 2020-11-13T00:56:04.740546:++ ===== clock time = 2s 129ms
201113-00:56:04,926 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression".
201113-00:56:04,928 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.frequency_filtering_0_0.frequency_filter" in "/outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter".
201113-00:56:04,935 nipype.workflow INFO:
[Node] Running "frequency_filter" ("CPAC.utils.interfaces.function.Function")
201113-00:56:10,463 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.frequency_filtering_0_0.frequency_filter".
201113-00:56:10,464 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:56:10,472 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/bandpassed_demeaned_filtered.nii.gz -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/regressor_bandpassed_demeaned_filtered.1D -polort 2 -prefix residuals.nii.gz
201113-00:56:10,745 nipype.interface INFO:
stderr 2020-11-13T00:56:10.745313:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:56:10,745 nipype.interface INFO:
stderr 2020-11-13T00:56:10.745944:++ Authored by: Cox the Algebraic (Linear)
201113-00:56:11,131 nipype.interface INFO:
stderr 2020-11-13T00:56:11.131807:++ Setting up regressors
201113-00:56:11,132 nipype.interface INFO:
stderr 2020-11-13T00:56:11.132138:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:56:11,132 nipype.interface INFO:
stderr 2020-11-13T00:56:11.132291: + -- 36 other fixed ort regressors
201113-00:56:11,132 nipype.interface INFO:
stderr 2020-11-13T00:56:11.132447:++ 130 retained time points MINUS 39 regressors ==> 91 D.O.F. left
201113-00:56:11,132 nipype.interface INFO:
stderr 2020-11-13T00:56:11.132964:++ 36196 voxels in the spatial mask
201113-00:56:11,133 nipype.interface INFO:
stderr 2020-11-13T00:56:11.133137:++ Compute pseudo-inverse of fixed orts
201113-00:56:11,134 nipype.interface INFO:
stderr 2020-11-13T00:56:11.134637:++ Loading dataset
201113-00:56:11,182 nipype.interface INFO:
stderr 2020-11-13T00:56:11.182489:++ Starting project-orization
201113-00:56:11,480 nipype.interface INFO:
stderr 2020-11-13T00:56:11.480073:++ Convert results to output dataset
201113-00:56:12,873 nipype.interface INFO:
stderr 2020-11-13T00:56:12.873210:++ Output dataset ./residuals.nii.gz
201113-00:56:12,873 nipype.interface INFO:
stderr 2020-11-13T00:56:12.873686:++ ===== clock time = 2s 128ms
201113-00:56:13,61 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression".
201113-00:56:13,63 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_residuals" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_residuals".
201113-00:56:13,72 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_residuals" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:56:13,300 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_residuals".
201113-00:56:13,302 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_freq_filtered" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_freq_filtered".
201113-00:56:13,307 nipype.workflow INFO:
[Node] Running "sinker_0_functional_freq_filtered" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:56:13,539 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_freq_filtered".
201113-00:56:13,541 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_regressors".
201113-00:56:13,548 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_regressors" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:56:13,780 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_regressors".
201113-00:56:13,782 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_2mm_flirt".
201113-00:56:13,790 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:56:14,552 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt".
201113-00:56:14,554 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_merge_masks".
201113-00:56:14,558 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:56:14,785 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks".
201113-00:56:14,786 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks".
201113-00:56:14,792 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:56:15,39 nipype.interface INFO:
stderr 2020-11-13T00:56:15.039922:++ no -frac option: defaulting to -union
201113-00:56:15,40 nipype.interface INFO:
stderr 2020-11-13T00:56:15.040267:++ processing 1 input dataset(s), NN=2...
201113-00:56:15,40 nipype.interface INFO:
stderr 2020-11-13T00:56:15.040457:++ padding all datasets by 0 (for dilations)
201113-00:56:15,75 nipype.interface INFO:
stderr 2020-11-13T00:56:15.075771:++ frac 0 over 1 volumes gives min count 0
201113-00:56:15,77 nipype.interface INFO:
stderr 2020-11-13T00:56:15.077321:++ voxel limits: 0 clipped, 1225 survived, 1555255 were zero
201113-00:56:15,77 nipype.interface INFO:
stderr 2020-11-13T00:56:15.077500:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:56:15,94 nipype.interface INFO:
stderr 2020-11-13T00:56:15.094627:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:56:15,252 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks".
201113-00:56:15,253 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_mean".
201113-00:56:15,259 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:56:20,85 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean".
201113-00:56:20,87 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.build_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors".
201113-00:56:20,133 nipype.workflow INFO:
[Node] Running "build_nuisance_regressors" ("CPAC.utils.interfaces.function.Function")
201113-00:56:20,403 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.build_nuisance_regressors".
201113-00:56:20,404 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_before-filt_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:56:20,430 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_before-filt_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
201113-00:56:20,685 nipype.interface INFO:
stderr 2020-11-13T00:56:20.685810:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:56:20,686 nipype.interface INFO:
stderr 2020-11-13T00:56:20.686189:++ Authored by: Cox the Algebraic (Linear)
201113-00:56:21,126 nipype.interface INFO:
stderr 2020-11-13T00:56:21.126373:++ Setting up regressors
201113-00:56:21,126 nipype.interface INFO:
stderr 2020-11-13T00:56:21.126946:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:56:21,127 nipype.interface INFO:
stderr 2020-11-13T00:56:21.127102: + -- 36 other fixed ort regressors
201113-00:56:21,127 nipype.interface INFO:
stderr 2020-11-13T00:56:21.127246:++ 130 retained time points MINUS 39 regressors ==> 91 D.O.F. left
201113-00:56:21,127 nipype.interface INFO:
stderr 2020-11-13T00:56:21.127780:++ 36319 voxels in the spatial mask
201113-00:56:21,127 nipype.interface INFO:
stderr 2020-11-13T00:56:21.127957:++ Compute pseudo-inverse of fixed orts
201113-00:56:21,129 nipype.interface INFO:
stderr 2020-11-13T00:56:21.129699:++ Loading dataset
201113-00:56:21,177 nipype.interface INFO:
stderr 2020-11-13T00:56:21.176961:++ Starting project-orization
201113-00:56:21,471 nipype.interface INFO:
stderr 2020-11-13T00:56:21.471620:++ Convert results to output dataset
201113-00:56:22,807 nipype.interface INFO:
stderr 2020-11-13T00:56:22.807197:++ Output dataset ./residuals.nii.gz
201113-00:56:22,807 nipype.interface INFO:
stderr 2020-11-13T00:56:22.807900:++ ===== clock time = 2s 122ms
201113-00:56:22,996 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression".
201113-00:56:22,997 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.frequency_filtering_0_0.frequency_filter" in "/outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter".
201113-00:56:23,4 nipype.workflow INFO:
[Node] Running "frequency_filter" ("CPAC.utils.interfaces.function.Function")
201113-00:56:28,522 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.frequency_filtering_0_0.frequency_filter".
201113-00:56:28,524 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:56:28,532 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/bandpassed_demeaned_filtered.nii.gz -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/regressor_bandpassed_demeaned_filtered.1D -polort 2 -prefix residuals.nii.gz
201113-00:56:28,783 nipype.interface INFO:
stderr 2020-11-13T00:56:28.783686:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:56:28,784 nipype.interface INFO:
stderr 2020-11-13T00:56:28.784025:++ Authored by: Cox the Algebraic (Linear)
201113-00:56:29,172 nipype.interface INFO:
stderr 2020-11-13T00:56:29.172418:++ Setting up regressors
201113-00:56:29,172 nipype.interface INFO:
stderr 2020-11-13T00:56:29.172971:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:56:29,173 nipype.interface INFO:
stderr 2020-11-13T00:56:29.173124: + -- 36 other fixed ort regressors
201113-00:56:29,173 nipype.interface INFO:
stderr 2020-11-13T00:56:29.173269:++ 130 retained time points MINUS 39 regressors ==> 91 D.O.F. left
201113-00:56:29,173 nipype.interface INFO:
stderr 2020-11-13T00:56:29.173877:++ 36319 voxels in the spatial mask
201113-00:56:29,174 nipype.interface INFO:
stderr 2020-11-13T00:56:29.174052:++ Compute pseudo-inverse of fixed orts
201113-00:56:29,175 nipype.interface INFO:
stderr 2020-11-13T00:56:29.175545:++ Loading dataset
201113-00:56:29,222 nipype.interface INFO:
stderr 2020-11-13T00:56:29.222401:++ Starting project-orization
201113-00:56:29,517 nipype.interface INFO:
stderr 2020-11-13T00:56:29.517634:++ Convert results to output dataset
201113-00:56:30,914 nipype.interface INFO:
stderr 2020-11-13T00:56:30.914277:++ Output dataset ./residuals.nii.gz
201113-00:56:30,915 nipype.interface INFO:
stderr 2020-11-13T00:56:30.914987:++ ===== clock time = 2s 131ms
201113-00:56:31,106 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression".
201113-00:56:31,107 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_residuals" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_residuals".
201113-00:56:31,115 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_residuals" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:56:31,345 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_residuals".
201113-00:56:31,346 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_freq_filtered" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_freq_filtered".
201113-00:56:31,353 nipype.workflow INFO:
[Node] Running "sinker_0_functional_freq_filtered" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:56:31,581 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_freq_filtered".
201113-00:56:31,583 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_regressors".
201113-00:56:31,590 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_regressors" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:56:31,820 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_regressors".
201113-00:56:31,822 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_2mm_flirt".
201113-00:56:31,830 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-128_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:56:32,593 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt".
201113-00:56:32,594 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_merge_masks".
201113-00:56:32,599 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:56:32,826 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks".
201113-00:56:32,827 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks".
201113-00:56:32,833 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:56:33,105 nipype.interface INFO:
stderr 2020-11-13T00:56:33.105512:++ no -frac option: defaulting to -union
201113-00:56:33,105 nipype.interface INFO:
stderr 2020-11-13T00:56:33.105870:++ processing 1 input dataset(s), NN=2...
201113-00:56:33,106 nipype.interface INFO:
stderr 2020-11-13T00:56:33.106029:++ padding all datasets by 0 (for dilations)
201113-00:56:33,144 nipype.interface INFO:
stderr 2020-11-13T00:56:33.144757:++ frac 0 over 1 volumes gives min count 0
201113-00:56:33,146 nipype.interface INFO:
stderr 2020-11-13T00:56:33.146347:++ voxel limits: 0 clipped, 1225 survived, 1555255 were zero
201113-00:56:33,146 nipype.interface INFO:
stderr 2020-11-13T00:56:33.146527:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:56:33,164 nipype.interface INFO:
stderr 2020-11-13T00:56:33.164061:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:56:33,318 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks".
201113-00:56:33,320 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_mean".
201113-00:56:33,326 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:56:38,155 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean".
201113-00:56:38,156 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.build_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors".
201113-00:56:38,230 nipype.workflow INFO:
[Node] Running "build_nuisance_regressors" ("CPAC.utils.interfaces.function.Function")
201113-00:56:38,516 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regressor_0_0.build_nuisance_regressors".
201113-00:56:38,518 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_before-filt_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:56:38,549 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_before-filt_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
201113-00:56:38,807 nipype.interface INFO:
stderr 2020-11-13T00:56:38.807713:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:56:38,808 nipype.interface INFO:
stderr 2020-11-13T00:56:38.808215:++ Authored by: Cox the Algebraic (Linear)
201113-00:56:39,250 nipype.interface INFO:
stderr 2020-11-13T00:56:39.250654:++ Setting up regressors
201113-00:56:39,250 nipype.interface INFO:
stderr 2020-11-13T00:56:39.250976:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:56:39,251 nipype.interface INFO:
stderr 2020-11-13T00:56:39.251130: + -- 36 other fixed ort regressors
201113-00:56:39,251 nipype.interface INFO:
stderr 2020-11-13T00:56:39.251274:++ 130 retained time points MINUS 39 regressors ==> 91 D.O.F. left
201113-00:56:39,251 nipype.interface INFO:
stderr 2020-11-13T00:56:39.251800:++ 36279 voxels in the spatial mask
201113-00:56:39,251 nipype.interface INFO:
stderr 2020-11-13T00:56:39.251975:++ Compute pseudo-inverse of fixed orts
201113-00:56:39,253 nipype.interface INFO:
stderr 2020-11-13T00:56:39.253525:++ Loading dataset
201113-00:56:39,301 nipype.interface INFO:
stderr 2020-11-13T00:56:39.301061:++ Starting project-orization
201113-00:56:39,594 nipype.interface INFO:
stderr 2020-11-13T00:56:39.594833:++ Convert results to output dataset
201113-00:56:40,924 nipype.interface INFO:
stderr 2020-11-13T00:56:40.924262:++ Output dataset ./residuals.nii.gz
201113-00:56:40,924 nipype.interface INFO:
stderr 2020-11-13T00:56:40.924750:++ ===== clock time = 2s 117ms
201113-00:56:41,113 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression".
201113-00:56:41,114 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.frequency_filtering_0_0.frequency_filter" in "/outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter".
201113-00:56:41,121 nipype.workflow INFO:
[Node] Running "frequency_filter" ("CPAC.utils.interfaces.function.Function")
201113-00:56:46,620 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.frequency_filtering_0_0.frequency_filter".
201113-00:56:46,621 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:56:46,630 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/bandpassed_demeaned_filtered.nii.gz -mask /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/regressor_bandpassed_demeaned_filtered.1D -polort 2 -prefix residuals.nii.gz
201113-00:56:46,883 nipype.interface INFO:
stderr 2020-11-13T00:56:46.883279:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:56:46,883 nipype.interface INFO:
stderr 2020-11-13T00:56:46.883744:++ Authored by: Cox the Algebraic (Linear)
201113-00:56:47,272 nipype.interface INFO:
stderr 2020-11-13T00:56:47.272435:++ Setting up regressors
201113-00:56:47,272 nipype.interface INFO:
stderr 2020-11-13T00:56:47.272766:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:56:47,272 nipype.interface INFO:
stderr 2020-11-13T00:56:47.272919: + -- 36 other fixed ort regressors
201113-00:56:47,273 nipype.interface INFO:
stderr 2020-11-13T00:56:47.273062:++ 130 retained time points MINUS 39 regressors ==> 91 D.O.F. left
201113-00:56:47,273 nipype.interface INFO:
stderr 2020-11-13T00:56:47.273641:++ 36279 voxels in the spatial mask
201113-00:56:47,273 nipype.interface INFO:
stderr 2020-11-13T00:56:47.273867:++ Compute pseudo-inverse of fixed orts
201113-00:56:47,275 nipype.interface INFO:
stderr 2020-11-13T00:56:47.275392:++ Loading dataset
201113-00:56:47,322 nipype.interface INFO:
stderr 2020-11-13T00:56:47.322485:++ Starting project-orization
201113-00:56:47,617 nipype.interface INFO:
stderr 2020-11-13T00:56:47.617397:++ Convert results to output dataset
201113-00:56:48,999 nipype.interface INFO:
stderr 2020-11-13T00:56:48.999467:++ Output dataset ./residuals.nii.gz
201113-00:56:48,999 nipype.interface INFO:
stderr 2020-11-13T00:56:48.999929:++ ===== clock time = 2s 116ms
201113-00:56:49,187 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression".
201113-00:56:49,189 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_residuals" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_residuals".
201113-00:56:49,197 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_residuals" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:56:49,426 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_residuals".
201113-00:56:49,428 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_freq_filtered" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_freq_filtered".
201113-00:56:49,436 nipype.workflow INFO:
[Node] Running "sinker_0_functional_freq_filtered" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:56:49,666 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_freq_filtered".
201113-00:56:49,669 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_regressors".
201113-00:56:49,676 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_regressors" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:56:49,907 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_nuisance_regressors".
201113-00:56:49,909 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_csf_gm_wm_0.resample_o_csf" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_csf_gm_wm_0/resample_o_csf".
201113-00:56:49,914 nipype.workflow INFO:
[Node] Running "resample_o_csf" ("CPAC.utils.interfaces.function.Function")
201113-00:56:50,697 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_csf_gm_wm_0.resample_o_csf".
201113-00:56:50,699 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_csf_gm_wm_0.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_csf_gm_wm_0/montage_s".
201113-00:56:50,724 nipype.workflow INFO:
[Node] Running "montage_s" ("CPAC.utils.interfaces.function.Function")
201113-00:56:54,190 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_csf_gm_wm_0.montage_s".
201113-00:56:54,192 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___csf_gm_wm_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/sinker_0_qc___csf_gm_wm_s".
201113-00:56:54,199 nipype.workflow INFO:
[Node] Running "sinker_0_qc___csf_gm_wm_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:56:54,412 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___csf_gm_wm_s/montage_csf_gm_wm_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/csf_gm_wm_s/montage_csf_gm_wm_s.png
201113-00:56:54,430 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___csf_gm_wm_s".
201113-00:56:54,432 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_csf_gm_wm_0.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_csf_gm_wm_0/montage_a".
201113-00:56:54,439 nipype.workflow INFO:
[Node] Running "montage_a" ("CPAC.utils.interfaces.function.Function")
201113-00:56:58,123 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_csf_gm_wm_0.montage_a".
201113-00:56:58,124 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___csf_gm_wm_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/sinker_0_qc___csf_gm_wm_a".
201113-00:56:58,131 nipype.workflow INFO:
[Node] Running "sinker_0_qc___csf_gm_wm_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:56:58,344 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___csf_gm_wm_a/montage_csf_gm_wm_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/csf_gm_wm_a/montage_csf_gm_wm_a.png
201113-00:56:58,363 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___csf_gm_wm_a".
201113-00:56:58,364 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_anatomical_csf_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/sinker_0_anatomical_csf_mask".
201113-00:56:58,370 nipype.workflow INFO:
[Node] Running "sinker_0_anatomical_csf_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:56:58,602 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_anatomical_csf_mask".
201113-00:56:58,604 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_anatomical_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-1/sinker_0_anatomical_brain".
201113-00:56:58,612 nipype.workflow INFO:
[Node] Running "sinker_0_anatomical_brain" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:56:58,842 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_anatomical_brain".
201113-00:56:58,843 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_edge_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_edge_0".
201113-00:56:58,848 nipype.workflow INFO:
[Node] Running "anat_edge_0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:02,164 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_edge_0".
201113-00:57:02,166 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.resample_o" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/resample_o".
201113-00:57:02,171 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:57:03,79 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.resample_o".
201113-00:57:03,80 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_tgng_run-3/montage_s".
201113-00:57:03,112 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_tgng_run-3/montage_s/mapflow/_montage_s0".
201113-00:57:03,117 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:05,511 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:57:05,515 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.montage_s".
201113-00:57:05,515 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:05,523 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:05,732 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_t1_edge_s/_scan_tgng_run-3/_montage_s0/t1_edge_on_mean_func_in_t1_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_t1_edge_s/_scan_tgng_run-3/_montage_s0/t1_edge_on_mean_func_in_t1_s.png
201113-00:57:05,748 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:05,750 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_tgng_run-3/montage_a".
201113-00:57:05,756 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_tgng_run-3/montage_a/mapflow/_montage_a0".
201113-00:57:05,761 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:08,353 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:57:08,356 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.montage_a".
201113-00:57:08,356 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:08,364 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:08,573 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_t1_edge_a/_scan_tgng_run-3/_montage_a0/t1_edge_on_mean_func_in_t1_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_t1_edge_a/_scan_tgng_run-3/_montage_a0/t1_edge_on_mean_func_in_t1_a.png
201113-00:57:08,590 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:08,592 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_tgng_run-2/montage_s".
201113-00:57:08,599 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_tgng_run-2/montage_s/mapflow/_montage_s0".
201113-00:57:08,603 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:10,913 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:57:10,916 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.montage_s".
201113-00:57:10,916 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:10,924 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:11,133 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_t1_edge_s/_scan_tgng_run-2/_montage_s0/t1_edge_on_mean_func_in_t1_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_t1_edge_s/_scan_tgng_run-2/_montage_s0/t1_edge_on_mean_func_in_t1_s.png
201113-00:57:11,151 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:11,153 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_tgng_run-2/montage_a".
201113-00:57:11,159 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_tgng_run-2/montage_a/mapflow/_montage_a0".
201113-00:57:11,164 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:13,748 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:57:13,752 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.montage_a".
201113-00:57:13,752 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:13,759 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:13,970 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_t1_edge_a/_scan_tgng_run-2/_montage_a0/t1_edge_on_mean_func_in_t1_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_t1_edge_a/_scan_tgng_run-2/_montage_a0/t1_edge_on_mean_func_in_t1_a.png
201113-00:57:13,988 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:13,990 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_tgng_run-1/montage_s".
201113-00:57:13,997 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_tgng_run-1/montage_s/mapflow/_montage_s0".
201113-00:57:14,2 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:16,415 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:57:16,419 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.montage_s".
201113-00:57:16,419 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:16,426 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:16,639 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_t1_edge_s/_scan_tgng_run-1/_montage_s0/t1_edge_on_mean_func_in_t1_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_t1_edge_s/_scan_tgng_run-1/_montage_s0/t1_edge_on_mean_func_in_t1_s.png
201113-00:57:16,656 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:16,657 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_tgng_run-1/montage_a".
201113-00:57:16,664 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_tgng_run-1/montage_a/mapflow/_montage_a0".
201113-00:57:16,668 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:19,254 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:57:19,259 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.montage_a".
201113-00:57:19,259 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:19,266 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:19,480 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_t1_edge_a/_scan_tgng_run-1/_montage_a0/t1_edge_on_mean_func_in_t1_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_t1_edge_a/_scan_tgng_run-1/_montage_a0/t1_edge_on_mean_func_in_t1_a.png
201113-00:57:19,498 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:19,500 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_rest_run-1/montage_s".
201113-00:57:19,526 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_rest_run-1/montage_s/mapflow/_montage_s0".
201113-00:57:19,531 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:21,832 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:57:21,835 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.montage_s".
201113-00:57:21,836 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:21,843 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:22,52 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_t1_edge_s/_scan_rest_run-1/_montage_s0/t1_edge_on_mean_func_in_t1_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_t1_edge_s/_scan_rest_run-1/_montage_s0/t1_edge_on_mean_func_in_t1_s.png
201113-00:57:22,70 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:22,71 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_rest_run-1/montage_a".
201113-00:57:22,77 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_rest_run-1/montage_a/mapflow/_montage_a0".
201113-00:57:22,81 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:24,688 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:57:24,691 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.montage_a".
201113-00:57:24,692 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:24,699 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:24,911 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_t1_edge_a/_scan_rest_run-1/_montage_a0/t1_edge_on_mean_func_in_t1_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_t1_edge_a/_scan_rest_run-1/_montage_a0/t1_edge_on_mean_func_in_t1_a.png
201113-00:57:24,928 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:24,929 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_ms_run-1/montage_s".
201113-00:57:24,936 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_ms_run-1/montage_s/mapflow/_montage_s0".
201113-00:57:24,940 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:27,260 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:57:27,263 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.montage_s".
201113-00:57:27,264 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:27,271 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:27,481 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_t1_edge_s/_scan_ms_run-1/_montage_s0/t1_edge_on_mean_func_in_t1_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_t1_edge_s/_scan_ms_run-1/_montage_s0/t1_edge_on_mean_func_in_t1_s.png
201113-00:57:27,497 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:27,499 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_ms_run-1/montage_a".
201113-00:57:27,505 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_ms_run-1/montage_a/mapflow/_montage_a0".
201113-00:57:27,509 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:30,112 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:57:30,115 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.montage_a".
201113-00:57:30,115 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:30,122 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:30,332 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_t1_edge_a/_scan_ms_run-1/_montage_a0/t1_edge_on_mean_func_in_t1_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_t1_edge_a/_scan_ms_run-1/_montage_a0/t1_edge_on_mean_func_in_t1_a.png
201113-00:57:30,348 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:30,350 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_matching_run-3/montage_s".
201113-00:57:30,386 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_matching_run-3/montage_s/mapflow/_montage_s0".
201113-00:57:30,391 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:32,703 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:57:32,706 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.montage_s".
201113-00:57:32,706 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:32,714 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:32,923 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_t1_edge_s/_scan_matching_run-3/_montage_s0/t1_edge_on_mean_func_in_t1_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_t1_edge_s/_scan_matching_run-3/_montage_s0/t1_edge_on_mean_func_in_t1_s.png
201113-00:57:32,939 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:32,941 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_matching_run-3/montage_a".
201113-00:57:32,948 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_matching_run-3/montage_a/mapflow/_montage_a0".
201113-00:57:32,951 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:35,563 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:57:35,566 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.montage_a".
201113-00:57:35,566 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:35,573 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:35,783 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_t1_edge_a/_scan_matching_run-3/_montage_a0/t1_edge_on_mean_func_in_t1_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_t1_edge_a/_scan_matching_run-3/_montage_a0/t1_edge_on_mean_func_in_t1_a.png
201113-00:57:35,800 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:35,801 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_matching_run-2/montage_s".
201113-00:57:35,806 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_matching_run-2/montage_s/mapflow/_montage_s0".
201113-00:57:35,811 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:38,132 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:57:38,136 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.montage_s".
201113-00:57:38,136 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:38,144 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:38,353 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_t1_edge_s/_scan_matching_run-2/_montage_s0/t1_edge_on_mean_func_in_t1_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_t1_edge_s/_scan_matching_run-2/_montage_s0/t1_edge_on_mean_func_in_t1_s.png
201113-00:57:38,370 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:38,371 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_matching_run-2/montage_a".
201113-00:57:38,378 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_matching_run-2/montage_a/mapflow/_montage_a0".
201113-00:57:38,382 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:40,992 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:57:40,995 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.montage_a".
201113-00:57:40,995 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:41,2 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:41,212 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_t1_edge_a/_scan_matching_run-2/_montage_a0/t1_edge_on_mean_func_in_t1_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_t1_edge_a/_scan_matching_run-2/_montage_a0/t1_edge_on_mean_func_in_t1_a.png
201113-00:57:41,228 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:41,230 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_matching_run-1/montage_s".
201113-00:57:41,236 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_matching_run-1/montage_s/mapflow/_montage_s0".
201113-00:57:41,240 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:43,545 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:57:43,550 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.montage_s".
201113-00:57:43,550 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:43,558 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:43,770 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_t1_edge_s/_scan_matching_run-1/_montage_s0/t1_edge_on_mean_func_in_t1_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_t1_edge_s/_scan_matching_run-1/_montage_s0/t1_edge_on_mean_func_in_t1_s.png
201113-00:57:43,789 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:57:43,790 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_matching_run-1/montage_a".
201113-00:57:43,797 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_anat_0/_scan_matching_run-1/montage_a/mapflow/_montage_a0".
201113-00:57:43,801 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:46,405 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:57:46,408 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_anat_0.montage_a".
201113-00:57:46,408 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:46,416 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:46,629 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_t1_edge_a/_scan_matching_run-1/_montage_a0/t1_edge_on_mean_func_in_t1_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_t1_edge_a/_scan_matching_run-1/_montage_a0/t1_edge_on_mean_func_in_t1_a.png
201113-00:57:46,647 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:57:46,649 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_estimate_filter_info_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/sinker_0_motion_estimate_filter_info_plot".
201113-00:57:46,656 nipype.workflow INFO:
[Node] Running "sinker_0_motion_estimate_filter_info_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:46,890 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_estimate_filter_info_plot".
201113-00:57:46,892 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_estimate_filter_info_design" in "/outputs/tmp/resting_preproc_sub-128_ses-1/sinker_0_motion_estimate_filter_info_design".
201113-00:57:46,898 nipype.workflow INFO:
[Node] Running "sinker_0_motion_estimate_filter_info_design" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:57:47,127 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_estimate_filter_info_design".
201113-00:57:47,129 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.check_for_s3_lateral_ventricles_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/check_for_s3_lateral_ventricles_mask".
201113-00:57:47,133 nipype.workflow INFO:
[Node] Running "check_for_s3_lateral_ventricles_mask" ("CPAC.utils.interfaces.function.Function")
201113-00:57:47,365 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.check_for_s3_lateral_ventricles_mask".
201113-00:57:47,366 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.resampled_template_brain_for_func_derivative" in "/outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_brain_for_func_derivative".
201113-00:57:47,373 nipype.workflow INFO:
[Node] Running "resampled_template_brain_for_func_derivative" ("CPAC.utils.interfaces.function.Function")
201113-00:57:47,604 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.resampled_template_brain_for_func_derivative".
201113-00:57:47,605 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.resampled_template_brain_for_func_preproc" in "/outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_brain_for_func_preproc".
201113-00:57:47,610 nipype.workflow INFO:
[Node] Running "resampled_template_brain_for_func_preproc" ("CPAC.utils.interfaces.function.Function")
201113-00:57:47,841 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.resampled_template_brain_for_func_preproc".
201113-00:57:47,842 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.func_template_edge_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/func_template_edge_0".
201113-00:57:47,847 nipype.workflow INFO:
[Node] Running "func_template_edge_0" ("CPAC.utils.interfaces.function.Function")
201113-00:57:48,353 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.func_template_edge_0".
201113-00:57:48,355 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.resample_o" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/resample_o".
201113-00:57:48,359 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:57:48,803 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.resample_o".
201113-00:57:48,805 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.resampled_template_skull_for_func_derivative" in "/outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_func_derivative".
201113-00:57:48,809 nipype.workflow INFO:
[Node] Running "resampled_template_skull_for_func_derivative" ("CPAC.utils.interfaces.function.Function")
201113-00:57:49,21 nipype.workflow INFO:
[Node] Setting-up "template_skull_for_func_derivative" in "/outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative".
201113-00:57:49,26 nipype.workflow INFO:
[Node] Running "template_skull_for_func_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference.nii.gz
201113-00:57:49,771 nipype.workflow INFO:
[Node] Finished "template_skull_for_func_derivative".
201113-00:57:49,786 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.resampled_template_skull_for_func_derivative".
201113-00:57:49,788 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.resampled_template_skull_for_func_preproc" in "/outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_func_preproc".
201113-00:57:49,792 nipype.workflow INFO:
[Node] Running "resampled_template_skull_for_func_preproc" ("CPAC.utils.interfaces.function.Function")
201113-00:57:50,2 nipype.workflow INFO:
[Node] Setting-up "template_skull_for_func_preproc" in "/outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc".
201113-00:57:50,7 nipype.workflow INFO:
[Node] Running "template_skull_for_func_preproc" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference.nii.gz
201113-00:57:50,675 nipype.workflow INFO:
[Node] Finished "template_skull_for_func_preproc".
201113-00:57:50,689 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.resampled_template_skull_for_func_preproc".
201113-00:57:50,690 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.check_for_s3_PRIORS_WHITE" in "/outputs/tmp/resting_preproc_sub-128_ses-1/check_for_s3_PRIORS_WHITE".
201113-00:57:50,694 nipype.workflow INFO:
[Node] Running "check_for_s3_PRIORS_WHITE" ("CPAC.utils.interfaces.function.Function")
201113-00:57:50,939 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.check_for_s3_PRIORS_WHITE".
201113-00:57:50,940 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.check_for_s3_PRIORS_GRAY" in "/outputs/tmp/resting_preproc_sub-128_ses-1/check_for_s3_PRIORS_GRAY".
201113-00:57:50,944 nipype.workflow INFO:
[Node] Running "check_for_s3_PRIORS_GRAY" ("CPAC.utils.interfaces.function.Function")
201113-00:57:51,169 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.check_for_s3_PRIORS_GRAY".
201113-00:57:51,170 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.check_for_s3_PRIORS_CSF" in "/outputs/tmp/resting_preproc_sub-128_ses-1/check_for_s3_PRIORS_CSF".
201113-00:57:51,174 nipype.workflow INFO:
[Node] Running "check_for_s3_PRIORS_CSF" ("CPAC.utils.interfaces.function.Function")
201113-00:57:51,420 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.check_for_s3_PRIORS_CSF".
201113-00:57:51,422 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.resampled_template_skull_for_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_anat".
201113-00:57:51,426 nipype.workflow INFO:
[Node] Running "resampled_template_skull_for_anat" ("CPAC.utils.interfaces.function.Function")
201113-00:57:51,639 nipype.workflow INFO:
[Node] Setting-up "template_skull_for_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_anat/template_skull_for_anat".
201113-00:57:51,645 nipype.workflow INFO:
[Node] Running "template_skull_for_anat" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix mni_icbm152_t1_tal_nlin_asym_09c_resample.nii.gz -rmode Cu -dxyz 1.000000 1.000000 1.000000 -inset /outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_anat/template_skull_for_anat/mni_icbm152_t1_tal_nlin_asym_09c.nii
201113-00:57:51,900 nipype.interface INFO:
stderr 2020-11-13T00:57:51.900823:** AFNI converts NIFTI_datatype=4 (INT16) in file /outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_anat/template_skull_for_anat/mni_icbm152_t1_tal_nlin_asym_09c.nii to FLOAT32
201113-00:57:51,901 nipype.interface INFO:
stderr 2020-11-13T00:57:51.901204: Warnings of this type will be muted for this session.
201113-00:57:51,901 nipype.interface INFO:
stderr 2020-11-13T00:57:51.901204: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-00:57:54,466 nipype.workflow INFO:
[Node] Finished "template_skull_for_anat".
201113-00:57:54,481 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.resampled_template_skull_for_anat".
201113-00:57:54,482 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.resampled_template_brain_for_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_brain_for_anat".
201113-00:57:54,486 nipype.workflow INFO:
[Node] Running "resampled_template_brain_for_anat" ("CPAC.utils.interfaces.function.Function")
201113-00:57:54,699 nipype.workflow INFO:
[Node] Setting-up "template_brain_for_anat" in "/outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_brain_for_anat/template_brain_for_anat".
201113-00:57:54,704 nipype.workflow INFO:
[Node] Running "template_brain_for_anat" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix tpl-MNI152NLin2009cAsym_res-01_desc-brain_T1w_resample.nii.gz -rmode Cu -dxyz 1.000000 1.000000 1.000000 -inset /outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_brain_for_anat/template_brain_for_anat/tpl-MNI152NLin2009cAsym_res-01_desc-brain_T1w.nii.gz
201113-00:57:56,506 nipype.workflow INFO:
[Node] Finished "template_brain_for_anat".
201113-00:57:56,521 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.resampled_template_brain_for_anat".
201113-00:57:56,522 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_mni_ants_register_0.calc_ants_warp" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp".
201113-00:57:56,533 nipype.workflow INFO:
[Node] Running "calc_ants_warp" ("nipype.interfaces.utility.wrappers.Function")
201113-04:29:43,607 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_mni_ants_register_0.calc_ants_warp".
201113-04:29:43,618 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mni_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mni_anat_0/resample_u".
201113-04:29:43,629 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-04:29:44,897 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mni_anat_0.resample_u".
201113-04:29:44,900 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_anatomical_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/sinker_0_anatomical_to_standard".
201113-04:29:44,916 nipype.workflow INFO:
[Node] Running "sinker_0_anatomical_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:29:45,146 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_anatomical_to_standard".
201113-04:29:45,148 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_mni_ants_register_0.select_inverse_warp" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/select_inverse_warp".
201113-04:29:45,160 nipype.workflow INFO:
[Node] Running "select_inverse_warp" ("nipype.interfaces.utility.wrappers.Function")
201113-04:29:45,388 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_mni_ants_register_0.select_inverse_warp".
201113-04:29:45,389 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mni_to_anatomical_nonlinear_xfm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/sinker_0_mni_to_anatomical_nonlinear_xfm".
201113-04:29:45,396 nipype.workflow INFO:
[Node] Running "sinker_0_mni_to_anatomical_nonlinear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:29:45,627 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mni_to_anatomical_nonlinear_xfm".
201113-04:29:45,629 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_mni_ants_register_0.select_forward_warp" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/select_forward_warp".
201113-04:29:45,640 nipype.workflow INFO:
[Node] Running "select_forward_warp" ("nipype.interfaces.utility.wrappers.Function")
201113-04:29:45,871 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_mni_ants_register_0.select_forward_warp".
201113-04:29:45,872 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_anatomical_to_mni_nonlinear_xfm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/sinker_0_anatomical_to_mni_nonlinear_xfm".
201113-04:29:45,878 nipype.workflow INFO:
[Node] Running "sinker_0_anatomical_to_mni_nonlinear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:29:46,109 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_anatomical_to_mni_nonlinear_xfm".
201113-04:29:46,111 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_mni_ants_register_0.select_forward_affine" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/select_forward_affine".
201113-04:29:46,122 nipype.workflow INFO:
[Node] Running "select_forward_affine" ("nipype.interfaces.utility.wrappers.Function")
201113-04:29:46,351 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_mni_ants_register_0.select_forward_affine".
201113-04:29:46,352 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_ants_affine_xfm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/sinker_0_ants_affine_xfm".
201113-04:29:46,361 nipype.workflow INFO:
[Node] Running "sinker_0_ants_affine_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:29:46,591 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_ants_affine_xfm".
201113-04:29:46,593 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_mni_ants_register_0.select_forward_rigid" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/select_forward_rigid".
201113-04:29:46,603 nipype.workflow INFO:
[Node] Running "select_forward_rigid" ("nipype.interfaces.utility.wrappers.Function")
201113-04:29:46,833 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_mni_ants_register_0.select_forward_rigid".
201113-04:29:46,834 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_ants_rigid_xfm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/sinker_0_ants_rigid_xfm".
201113-04:29:46,841 nipype.workflow INFO:
[Node] Running "sinker_0_ants_rigid_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:29:47,71 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_ants_rigid_xfm".
201113-04:29:47,73 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_mni_ants_register_0.select_forward_initial" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/select_forward_initial".
201113-04:29:47,84 nipype.workflow INFO:
[Node] Running "select_forward_initial" ("nipype.interfaces.utility.wrappers.Function")
201113-04:29:47,316 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_mni_ants_register_0.select_forward_initial".
201113-04:29:47,318 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-04:29:47,326 nipype.workflow INFO:
[Node] Running "collect_transforms_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.base.Merge")
201113-04:29:47,557 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-04:29:47,559 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-04:29:47,563 nipype.workflow INFO:
[Node] Running "check_transformsfunctional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-04:29:47,793 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-04:29:47,794 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-04:29:47,803 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_freq_filtered_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/bandpassed_demeaned_filtered.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output bandpassed_demeaned_filtered_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-04:29:50,457 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-04:29:50,459 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.write_composite_xfm_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/write_composite_xfm_functional_to_standard__t1_0".
201113-04:29:50,466 nipype.workflow INFO:
[Node] Running "write_composite_xfm_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output [ func_to_standard_xfm.nii.gz, 1 ] --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-04:41:16,456 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.write_composite_xfm_functional_to_standard__t1_0".
201113-04:41:16,459 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard_xfm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard_xfm".
201113-04:41:16,467 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:41:16,698 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard_xfm".
201113-04:41:16,699 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0".
201113-04:41:16,707 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-04:53:01,212 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_to_standard__t1_0".
201113-04:53:01,214 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-04:53:01,246 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-04:53:01,699 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.resample_functional_roi_0".
201113-04:53:01,701 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-04:53:01,707 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-04:53:07,488 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats".
201113-04:53:07,490 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-04:53:07,495 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-04:53:07,740 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv".
201113-04:53:07,741 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-04:53:07,783 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-04:53:07,816 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-04:53:08,344 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-04:53:08,347 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.ndmg_graphs_0".
201113-04:53:08,348 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-04:53:08,355 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:53:08,591 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph".
201113-04:53:08,592 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-04:53:08,598 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-04:53:08,832 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz".
201113-04:53:08,833 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-04:53:08,840 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:53:09,72 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries".
201113-04:53:09,73 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-04:53:09,101 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-04:53:09,551 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.resample_functional_roi_0".
201113-04:53:09,553 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-04:53:09,558 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-04:53:15,316 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats".
201113-04:53:15,318 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-04:53:15,323 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-04:53:15,560 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv".
201113-04:53:15,562 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-04:53:15,606 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-04:53:15,639 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-04:53:16,162 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-04:53:16,165 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.ndmg_graphs_0".
201113-04:53:16,165 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-04:53:16,173 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:53:16,399 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph".
201113-04:53:16,401 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-04:53:16,405 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-04:53:16,637 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz".
201113-04:53:16,639 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-04:53:16,645 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:53:16,876 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries".
201113-04:53:16,878 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard".
201113-04:53:16,887 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:53:17,118 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard".
201113-04:53:17,120 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-04:53:17,127 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-04:53:19,795 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-04:53:19,797 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/apply_ants_warp_motion_correct_to_standard__t1_0".
201113-04:53:19,941 nipype.workflow INFO:
[Node] Running "apply_ants_warp_motion_correct_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-05:05:14,297 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0".
201113-05:05:14,299 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_correct_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_motion_correct_to_standard".
201113-05:05:14,308 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:05:14,536 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_correct_to_standard".
201113-05:05:14,538 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-05:05:14,568 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-05:05:22,76 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-05:05:22,78 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard__t1_0".
201113-05:05:22,86 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-05:05:29,563 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0".
201113-05:05:29,565 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.resample_u" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_tgng_run-3/resample_u".
201113-05:05:29,570 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-05:05:30,294 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.resample_u".
201113-05:05:30,296 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_tgng_run-3/montage_s".
201113-05:05:30,303 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_tgng_run-3/montage_s/mapflow/_montage_s0".
201113-05:05:30,308 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-05:05:32,82 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-05:05:32,86 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_s".
201113-05:05:32,86 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_qc___mean_func_with_mni_edge_s".
201113-05:05:32,94 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:05:32,303 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_mni_edge_s/_scan_tgng_run-3/_montage_s0/MNI_edge_on_mean_func_mni_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_mni_edge_s/_scan_tgng_run-3/_montage_s0/MNI_edge_on_mean_func_mni_s.png
201113-05:05:32,321 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_s".
201113-05:05:32,323 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_tgng_run-3/montage_a".
201113-05:05:32,329 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_tgng_run-3/montage_a/mapflow/_montage_a0".
201113-05:05:32,333 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-05:05:34,319 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-05:05:34,323 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_a".
201113-05:05:34,323 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_qc___mean_func_with_mni_edge_a".
201113-05:05:34,330 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:05:34,540 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_mni_edge_a/_scan_tgng_run-3/_montage_a0/MNI_edge_on_mean_func_mni_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_mni_edge_a/_scan_tgng_run-3/_montage_a0/MNI_edge_on_mean_func_mni_a.png
201113-05:05:34,559 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_a".
201113-05:05:34,560 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-3/csf_resample".
201113-05:05:34,568 nipype.workflow INFO:
[Node] Running "csf_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_csf_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-3/csf_resample/avg152T1_csf_bin.nii.gz
201113-05:05:34,818 nipype.interface INFO:
stderr 2020-11-13T05:05:34.818680:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-05:05:34,819 nipype.interface INFO:
stderr 2020-11-13T05:05:34.819054: Warnings of this type will be muted for this session.
201113-05:05:34,819 nipype.interface INFO:
stderr 2020-11-13T05:05:34.819054: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-05:05:35,71 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_resample".
201113-05:05:35,73 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-3/csf_mask".
201113-05:05:35,78 nipype.workflow INFO:
[Node] Running "csf_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-3/csf_resample/avg152T1_csf_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_csf_bin_resample_calc.nii
201113-05:05:35,326 nipype.interface INFO:
stderr 2020-11-13T05:05:35.326804:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-05:05:35,327 nipype.interface INFO:
stderr 2020-11-13T05:05:35.327167:++ Authored by: A cast of thousands
201113-05:05:35,454 nipype.interface INFO:
stderr 2020-11-13T05:05:35.454681:++ Output dataset ./avg152T1_csf_bin_resample_calc.nii
201113-05:05:35,615 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_mask".
201113-05:05:35,616 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-3/wm_resample".
201113-05:05:35,623 nipype.workflow INFO:
[Node] Running "wm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_white_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-3/wm_resample/avg152T1_white_bin.nii.gz
201113-05:05:35,869 nipype.interface INFO:
stderr 2020-11-13T05:05:35.869490:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-05:05:35,869 nipype.interface INFO:
stderr 2020-11-13T05:05:35.869853: Warnings of this type will be muted for this session.
201113-05:05:35,869 nipype.interface INFO:
stderr 2020-11-13T05:05:35.869853: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-05:05:36,68 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_resample".
201113-05:05:36,70 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-3/wm_mask".
201113-05:05:36,76 nipype.workflow INFO:
[Node] Running "wm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-3/wm_resample/avg152T1_white_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_white_bin_resample_calc.nii
201113-05:05:36,327 nipype.interface INFO:
stderr 2020-11-13T05:05:36.327131:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-05:05:36,327 nipype.interface INFO:
stderr 2020-11-13T05:05:36.327526:++ Authored by: A cast of thousands
201113-05:05:36,421 nipype.interface INFO:
stderr 2020-11-13T05:05:36.420970:++ Output dataset ./avg152T1_white_bin_resample_calc.nii
201113-05:05:36,580 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_mask".
201113-05:05:36,581 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-3/gm_resample".
201113-05:05:36,590 nipype.workflow INFO:
[Node] Running "gm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_gray_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-3/gm_resample/avg152T1_gray_bin.nii.gz
201113-05:05:36,837 nipype.interface INFO:
stderr 2020-11-13T05:05:36.837133:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-05:05:36,837 nipype.interface INFO:
stderr 2020-11-13T05:05:36.837504: Warnings of this type will be muted for this session.
201113-05:05:36,837 nipype.interface INFO:
stderr 2020-11-13T05:05:36.837504: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-05:05:37,57 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_resample".
201113-05:05:37,59 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-3/gm_mask".
201113-05:05:37,64 nipype.workflow INFO:
[Node] Running "gm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-3/gm_resample/avg152T1_gray_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_gray_bin_resample_calc.nii
201113-05:05:37,307 nipype.interface INFO:
stderr 2020-11-13T05:05:37.307445:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-05:05:37,307 nipype.interface INFO:
stderr 2020-11-13T05:05:37.307791:++ Authored by: A cast of thousands
201113-05:05:37,403 nipype.interface INFO:
stderr 2020-11-13T05:05:37.403749:++ Output dataset ./avg152T1_gray_bin_resample_calc.nii
201113-05:05:37,559 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_mask".
201113-05:05:37,561 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.carpet_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_plot".
201113-05:05:37,568 nipype.workflow INFO:
[Node] Running "carpet_plot" ("CPAC.utils.interfaces.function.Function")
201113-05:05:43,217 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.carpet_plot".
201113-05:05:43,220 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___carpet" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_qc___carpet".
201113-05:05:43,226 nipype.workflow INFO:
[Node] Running "sinker_0_qc___carpet" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:05:43,439 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___carpet/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/carpet/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png
201113-05:05:43,456 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___carpet".
201113-05:05:43,458 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_mean_functional_to_standard".
201113-05:05:43,465 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:05:43,696 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_to_standard".
201113-05:05:43,697 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-05:05:43,707 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-05:05:46,262 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-05:05:46,264 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-05:05:46,273 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-128_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-05:05:48,733 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-05:05:48,735 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/sinker_0_functional_brain_mask_to_standard".
201113-05:05:48,742 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:05:48,970 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask_to_standard".
201113-05:05:48,972 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-3/inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-05:05:48,977 nipype.workflow INFO:
[Node] Running "inverse_transform_flags_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-05:05:49,205 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-05:05:49,206 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-05:05:49,217 nipype.workflow INFO:
[Node] Running "collect_transforms_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.base.Merge")
201113-05:05:49,447 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-05:05:49,449 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-05:05:49,454 nipype.workflow INFO:
[Node] Running "check_transformsfunctional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-05:05:49,690 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-05:05:49,692 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-05:05:49,702 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_freq_filtered_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/bandpassed_demeaned_filtered.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output bandpassed_demeaned_filtered_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:05:52,343 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-05:05:52,345 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.write_composite_xfm_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/write_composite_xfm_functional_to_standard__t1_0".
201113-05:05:52,355 nipype.workflow INFO:
[Node] Running "write_composite_xfm_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output [ func_to_standard_xfm.nii.gz, 1 ] --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:17:13,620 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.write_composite_xfm_functional_to_standard__t1_0".
201113-05:17:13,623 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard_xfm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard_xfm".
201113-05:17:13,631 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:17:13,860 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard_xfm".
201113-05:17:13,861 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0".
201113-05:17:13,869 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:28:55,882 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_to_standard__t1_0".
201113-05:28:55,884 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-05:28:55,891 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-05:28:56,336 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.resample_functional_roi_0".
201113-05:28:56,338 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-05:28:56,344 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-05:29:02,130 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats".
201113-05:29:02,132 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-05:29:02,136 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-05:29:02,380 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv".
201113-05:29:02,382 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-05:29:02,424 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-05:29:02,458 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-05:29:02,981 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-05:29:02,985 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.ndmg_graphs_0".
201113-05:29:02,985 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-05:29:02,993 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:29:03,220 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph".
201113-05:29:03,222 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-05:29:03,226 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-05:29:03,458 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz".
201113-05:29:03,459 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-05:29:03,466 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:29:03,698 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries".
201113-05:29:03,700 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-05:29:03,706 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-05:29:04,153 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.resample_functional_roi_0".
201113-05:29:04,154 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-05:29:04,160 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-05:29:09,894 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats".
201113-05:29:09,895 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-05:29:09,900 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-05:29:10,140 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv".
201113-05:29:10,142 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-05:29:10,182 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-05:29:10,215 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-05:29:10,748 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-05:29:10,751 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.ndmg_graphs_0".
201113-05:29:10,752 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-05:29:10,759 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:29:10,987 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph".
201113-05:29:10,989 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-05:29:10,994 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-05:29:11,222 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz".
201113-05:29:11,223 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-05:29:11,231 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:29:11,460 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries".
201113-05:29:11,462 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard".
201113-05:29:11,470 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:29:11,700 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard".
201113-05:29:11,702 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-05:29:11,710 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:29:14,409 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-05:29:14,412 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/apply_ants_warp_motion_correct_to_standard__t1_0".
201113-05:29:14,532 nipype.workflow INFO:
[Node] Running "apply_ants_warp_motion_correct_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:41:05,27 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0".
201113-05:41:05,30 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_correct_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_motion_correct_to_standard".
201113-05:41:05,38 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:41:05,267 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_correct_to_standard".
201113-05:41:05,269 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-05:41:05,292 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:41:12,783 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-05:41:12,785 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard__t1_0".
201113-05:41:12,793 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:41:20,233 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0".
201113-05:41:20,234 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.resample_u" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_tgng_run-2/resample_u".
201113-05:41:20,239 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-05:41:20,962 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.resample_u".
201113-05:41:20,964 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_tgng_run-2/montage_s".
201113-05:41:20,972 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_tgng_run-2/montage_s/mapflow/_montage_s0".
201113-05:41:20,977 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-05:41:22,739 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-05:41:22,743 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_s".
201113-05:41:22,743 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_qc___mean_func_with_mni_edge_s".
201113-05:41:22,750 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:41:22,961 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_mni_edge_s/_scan_tgng_run-2/_montage_s0/MNI_edge_on_mean_func_mni_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_mni_edge_s/_scan_tgng_run-2/_montage_s0/MNI_edge_on_mean_func_mni_s.png
201113-05:41:22,977 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_s".
201113-05:41:22,979 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_tgng_run-2/montage_a".
201113-05:41:22,986 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_tgng_run-2/montage_a/mapflow/_montage_a0".
201113-05:41:22,990 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-05:41:24,976 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-05:41:24,980 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_a".
201113-05:41:24,980 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_qc___mean_func_with_mni_edge_a".
201113-05:41:24,988 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:41:25,200 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_mni_edge_a/_scan_tgng_run-2/_montage_a0/MNI_edge_on_mean_func_mni_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_mni_edge_a/_scan_tgng_run-2/_montage_a0/MNI_edge_on_mean_func_mni_a.png
201113-05:41:25,219 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_a".
201113-05:41:25,220 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-2/csf_resample".
201113-05:41:25,227 nipype.workflow INFO:
[Node] Running "csf_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_csf_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-2/csf_resample/avg152T1_csf_bin.nii.gz
201113-05:41:25,482 nipype.interface INFO:
stderr 2020-11-13T05:41:25.482186:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-05:41:25,482 nipype.interface INFO:
stderr 2020-11-13T05:41:25.482596: Warnings of this type will be muted for this session.
201113-05:41:25,482 nipype.interface INFO:
stderr 2020-11-13T05:41:25.482596: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-05:41:25,734 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_resample".
201113-05:41:25,735 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-2/csf_mask".
201113-05:41:25,741 nipype.workflow INFO:
[Node] Running "csf_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-2/csf_resample/avg152T1_csf_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_csf_bin_resample_calc.nii
201113-05:41:25,992 nipype.interface INFO:
stderr 2020-11-13T05:41:25.992168:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-05:41:25,992 nipype.interface INFO:
stderr 2020-11-13T05:41:25.992744:++ Authored by: A cast of thousands
201113-05:41:26,89 nipype.interface INFO:
stderr 2020-11-13T05:41:26.089167:++ Output dataset ./avg152T1_csf_bin_resample_calc.nii
201113-05:41:26,252 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_mask".
201113-05:41:26,253 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-2/wm_resample".
201113-05:41:26,262 nipype.workflow INFO:
[Node] Running "wm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_white_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-2/wm_resample/avg152T1_white_bin.nii.gz
201113-05:41:26,506 nipype.interface INFO:
stderr 2020-11-13T05:41:26.506646:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-05:41:26,507 nipype.interface INFO:
stderr 2020-11-13T05:41:26.506996: Warnings of this type will be muted for this session.
201113-05:41:26,507 nipype.interface INFO:
stderr 2020-11-13T05:41:26.506996: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-05:41:26,723 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_resample".
201113-05:41:26,724 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-2/wm_mask".
201113-05:41:26,729 nipype.workflow INFO:
[Node] Running "wm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-2/wm_resample/avg152T1_white_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_white_bin_resample_calc.nii
201113-05:41:26,977 nipype.interface INFO:
stderr 2020-11-13T05:41:26.977180:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-05:41:26,977 nipype.interface INFO:
stderr 2020-11-13T05:41:26.977536:++ Authored by: A cast of thousands
201113-05:41:27,72 nipype.interface INFO:
stderr 2020-11-13T05:41:27.071999:++ Output dataset ./avg152T1_white_bin_resample_calc.nii
201113-05:41:27,234 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_mask".
201113-05:41:27,236 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-2/gm_resample".
201113-05:41:27,243 nipype.workflow INFO:
[Node] Running "gm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_gray_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-2/gm_resample/avg152T1_gray_bin.nii.gz
201113-05:41:27,486 nipype.interface INFO:
stderr 2020-11-13T05:41:27.486194:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-05:41:27,486 nipype.interface INFO:
stderr 2020-11-13T05:41:27.486543: Warnings of this type will be muted for this session.
201113-05:41:27,486 nipype.interface INFO:
stderr 2020-11-13T05:41:27.486543: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-05:41:27,702 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_resample".
201113-05:41:27,704 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-2/gm_mask".
201113-05:41:27,709 nipype.workflow INFO:
[Node] Running "gm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-2/gm_resample/avg152T1_gray_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_gray_bin_resample_calc.nii
201113-05:41:27,954 nipype.interface INFO:
stderr 2020-11-13T05:41:27.954824:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-05:41:27,955 nipype.interface INFO:
stderr 2020-11-13T05:41:27.955165:++ Authored by: A cast of thousands
201113-05:41:28,49 nipype.interface INFO:
stderr 2020-11-13T05:41:28.049006:++ Output dataset ./avg152T1_gray_bin_resample_calc.nii
201113-05:41:28,205 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_mask".
201113-05:41:28,207 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.carpet_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_plot".
201113-05:41:28,214 nipype.workflow INFO:
[Node] Running "carpet_plot" ("CPAC.utils.interfaces.function.Function")
201113-05:41:33,876 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.carpet_plot".
201113-05:41:33,877 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___carpet" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_qc___carpet".
201113-05:41:33,884 nipype.workflow INFO:
[Node] Running "sinker_0_qc___carpet" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:41:34,98 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___carpet/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/carpet/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png
201113-05:41:34,115 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___carpet".
201113-05:41:34,116 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_mean_functional_to_standard".
201113-05:41:34,123 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:41:34,350 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_to_standard".
201113-05:41:34,352 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-05:41:34,362 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:41:36,853 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-05:41:36,854 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-05:41:36,863 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-128_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:41:39,328 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-05:41:39,330 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/sinker_0_functional_brain_mask_to_standard".
201113-05:41:39,338 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:41:39,568 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask_to_standard".
201113-05:41:39,570 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-2/inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-05:41:39,574 nipype.workflow INFO:
[Node] Running "inverse_transform_flags_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-05:41:39,801 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-05:41:39,802 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-05:41:39,841 nipype.workflow INFO:
[Node] Running "collect_transforms_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.base.Merge")
201113-05:41:40,71 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-05:41:40,73 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-05:41:40,77 nipype.workflow INFO:
[Node] Running "check_transformsfunctional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-05:41:40,311 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-05:41:40,312 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-05:41:40,323 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_freq_filtered_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/bandpassed_demeaned_filtered.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output bandpassed_demeaned_filtered_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-05:41:42,965 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-05:41:42,967 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.write_composite_xfm_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/write_composite_xfm_functional_to_standard__t1_0".
201113-05:41:42,994 nipype.workflow INFO:
[Node] Running "write_composite_xfm_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output [ func_to_standard_xfm.nii.gz, 1 ] --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-05:53:11,310 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.write_composite_xfm_functional_to_standard__t1_0".
201113-05:53:11,313 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard_xfm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard_xfm".
201113-05:53:11,322 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:53:11,550 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard_xfm".
201113-05:53:11,552 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0".
201113-05:53:11,559 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-06:05:00,97 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_to_standard__t1_0".
201113-06:05:00,100 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-06:05:00,107 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-06:05:00,565 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.resample_functional_roi_0".
201113-06:05:00,566 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-06:05:00,572 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-06:05:06,363 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats".
201113-06:05:06,365 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-06:05:06,370 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-06:05:06,616 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv".
201113-06:05:06,617 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-06:05:06,661 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-06:05:06,694 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-06:05:07,218 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-06:05:07,222 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.ndmg_graphs_0".
201113-06:05:07,222 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-06:05:07,227 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:05:07,457 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph".
201113-06:05:07,459 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-06:05:07,464 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-06:05:07,691 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz".
201113-06:05:07,692 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-06:05:07,698 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:05:07,928 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries".
201113-06:05:07,930 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-06:05:07,936 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-06:05:08,385 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.resample_functional_roi_0".
201113-06:05:08,386 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-06:05:08,393 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-06:05:14,164 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats".
201113-06:05:14,166 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-06:05:14,170 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-06:05:14,411 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv".
201113-06:05:14,413 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-06:05:14,453 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-06:05:14,487 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-06:05:15,11 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-06:05:15,15 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.ndmg_graphs_0".
201113-06:05:15,15 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-06:05:15,22 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:05:15,250 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph".
201113-06:05:15,252 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-06:05:15,255 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-06:05:15,488 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz".
201113-06:05:15,489 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-06:05:15,496 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:05:15,727 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries".
201113-06:05:15,728 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard".
201113-06:05:15,736 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:05:15,967 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard".
201113-06:05:15,969 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-06:05:15,976 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-06:05:18,739 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-06:05:18,741 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/apply_ants_warp_motion_correct_to_standard__t1_0".
201113-06:05:18,866 nipype.workflow INFO:
[Node] Running "apply_ants_warp_motion_correct_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-06:17:15,641 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0".
201113-06:17:15,644 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_correct_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_motion_correct_to_standard".
201113-06:17:15,653 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:17:15,883 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_correct_to_standard".
201113-06:17:15,884 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-06:17:15,906 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-06:17:23,562 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-06:17:23,564 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard__t1_0".
201113-06:17:23,573 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-06:17:31,59 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0".
201113-06:17:31,61 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.resample_u" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_tgng_run-1/resample_u".
201113-06:17:31,66 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-06:17:31,790 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.resample_u".
201113-06:17:31,792 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_tgng_run-1/montage_s".
201113-06:17:31,798 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_tgng_run-1/montage_s/mapflow/_montage_s0".
201113-06:17:31,803 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-06:17:33,560 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-06:17:33,564 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_s".
201113-06:17:33,564 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_qc___mean_func_with_mni_edge_s".
201113-06:17:33,572 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:17:33,782 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_mni_edge_s/_scan_tgng_run-1/_montage_s0/MNI_edge_on_mean_func_mni_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_mni_edge_s/_scan_tgng_run-1/_montage_s0/MNI_edge_on_mean_func_mni_s.png
201113-06:17:33,798 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_s".
201113-06:17:33,800 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_tgng_run-1/montage_a".
201113-06:17:33,807 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_tgng_run-1/montage_a/mapflow/_montage_a0".
201113-06:17:33,812 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-06:17:35,798 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-06:17:35,802 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_a".
201113-06:17:35,803 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_qc___mean_func_with_mni_edge_a".
201113-06:17:35,810 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:17:36,21 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_mni_edge_a/_scan_tgng_run-1/_montage_a0/MNI_edge_on_mean_func_mni_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_mni_edge_a/_scan_tgng_run-1/_montage_a0/MNI_edge_on_mean_func_mni_a.png
201113-06:17:36,37 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_a".
201113-06:17:36,39 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-1/csf_resample".
201113-06:17:36,45 nipype.workflow INFO:
[Node] Running "csf_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_csf_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-1/csf_resample/avg152T1_csf_bin.nii.gz
201113-06:17:36,296 nipype.interface INFO:
stderr 2020-11-13T06:17:36.296472:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-06:17:36,296 nipype.interface INFO:
stderr 2020-11-13T06:17:36.296844: Warnings of this type will be muted for this session.
201113-06:17:36,296 nipype.interface INFO:
stderr 2020-11-13T06:17:36.296844: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-06:17:36,522 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_resample".
201113-06:17:36,524 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-1/csf_mask".
201113-06:17:36,529 nipype.workflow INFO:
[Node] Running "csf_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-1/csf_resample/avg152T1_csf_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_csf_bin_resample_calc.nii
201113-06:17:36,779 nipype.interface INFO:
stderr 2020-11-13T06:17:36.779841:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-06:17:36,780 nipype.interface INFO:
stderr 2020-11-13T06:17:36.780205:++ Authored by: A cast of thousands
201113-06:17:36,903 nipype.interface INFO:
stderr 2020-11-13T06:17:36.903736:++ Output dataset ./avg152T1_csf_bin_resample_calc.nii
201113-06:17:37,72 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_mask".
201113-06:17:37,73 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-1/wm_resample".
201113-06:17:37,80 nipype.workflow INFO:
[Node] Running "wm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_white_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-1/wm_resample/avg152T1_white_bin.nii.gz
201113-06:17:37,327 nipype.interface INFO:
stderr 2020-11-13T06:17:37.327399:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-06:17:37,327 nipype.interface INFO:
stderr 2020-11-13T06:17:37.327738: Warnings of this type will be muted for this session.
201113-06:17:37,327 nipype.interface INFO:
stderr 2020-11-13T06:17:37.327738: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-06:17:37,521 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_resample".
201113-06:17:37,523 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-1/wm_mask".
201113-06:17:37,528 nipype.workflow INFO:
[Node] Running "wm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-1/wm_resample/avg152T1_white_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_white_bin_resample_calc.nii
201113-06:17:37,775 nipype.interface INFO:
stderr 2020-11-13T06:17:37.775786:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-06:17:37,776 nipype.interface INFO:
stderr 2020-11-13T06:17:37.776120:++ Authored by: A cast of thousands
201113-06:17:37,892 nipype.interface INFO:
stderr 2020-11-13T06:17:37.892643:++ Output dataset ./avg152T1_white_bin_resample_calc.nii
201113-06:17:38,50 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_mask".
201113-06:17:38,51 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-1/gm_resample".
201113-06:17:38,60 nipype.workflow INFO:
[Node] Running "gm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_gray_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-1/gm_resample/avg152T1_gray_bin.nii.gz
201113-06:17:38,305 nipype.interface INFO:
stderr 2020-11-13T06:17:38.305768:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-06:17:38,306 nipype.interface INFO:
stderr 2020-11-13T06:17:38.306109: Warnings of this type will be muted for this session.
201113-06:17:38,306 nipype.interface INFO:
stderr 2020-11-13T06:17:38.306109: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-06:17:38,520 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_resample".
201113-06:17:38,521 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-1/gm_mask".
201113-06:17:38,526 nipype.workflow INFO:
[Node] Running "gm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-1/gm_resample/avg152T1_gray_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_gray_bin_resample_calc.nii
201113-06:17:38,774 nipype.interface INFO:
stderr 2020-11-13T06:17:38.774159:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-06:17:38,774 nipype.interface INFO:
stderr 2020-11-13T06:17:38.774505:++ Authored by: A cast of thousands
201113-06:17:38,893 nipype.interface INFO:
stderr 2020-11-13T06:17:38.893847:++ Output dataset ./avg152T1_gray_bin_resample_calc.nii
201113-06:17:39,55 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_mask".
201113-06:17:39,57 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.carpet_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_plot".
201113-06:17:39,64 nipype.workflow INFO:
[Node] Running "carpet_plot" ("CPAC.utils.interfaces.function.Function")
201113-06:17:44,725 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.carpet_plot".
201113-06:17:44,727 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___carpet" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_qc___carpet".
201113-06:17:44,735 nipype.workflow INFO:
[Node] Running "sinker_0_qc___carpet" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:17:44,948 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___carpet/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/carpet/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png
201113-06:17:44,966 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___carpet".
201113-06:17:44,967 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_mean_functional_to_standard".
201113-06:17:44,974 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:17:45,200 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_to_standard".
201113-06:17:45,202 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-06:17:45,210 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-06:17:47,706 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-06:17:47,708 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-06:17:47,716 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-128_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-06:17:50,208 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-06:17:50,210 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/sinker_0_functional_brain_mask_to_standard".
201113-06:17:50,218 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:17:50,448 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask_to_standard".
201113-06:17:50,450 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_tgng_run-1/inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-06:17:50,454 nipype.workflow INFO:
[Node] Running "inverse_transform_flags_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-06:17:50,680 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-06:17:50,681 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-06:17:50,693 nipype.workflow INFO:
[Node] Running "collect_transforms_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.base.Merge")
201113-06:17:50,920 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-06:17:50,922 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-06:17:50,926 nipype.workflow INFO:
[Node] Running "check_transformsfunctional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-06:17:51,162 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-06:17:51,163 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-06:17:51,173 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_freq_filtered_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/bandpassed_demeaned_filtered.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output bandpassed_demeaned_filtered_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/change_transform_type_0/updated_affine.txt
201113-06:17:53,774 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-06:17:53,776 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.write_composite_xfm_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/write_composite_xfm_functional_to_standard__t1_0".
201113-06:17:53,785 nipype.workflow INFO:
[Node] Running "write_composite_xfm_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output [ func_to_standard_xfm.nii.gz, 1 ] --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/change_transform_type_0/updated_affine.txt
201113-06:34:51,292 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.write_composite_xfm_functional_to_standard__t1_0".
201113-06:34:51,295 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard_xfm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard_xfm".
201113-06:34:51,303 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:34:51,530 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard_xfm".
201113-06:34:51,532 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0".
201113-06:34:51,540 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/change_transform_type_0/updated_affine.txt
201113-06:52:20,107 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_to_standard__t1_0".
201113-06:52:20,110 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-06:52:20,117 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-06:52:20,572 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.resample_functional_roi_0".
201113-06:52:20,573 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-06:52:20,579 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-06:52:28,491 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats".
201113-06:52:28,492 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-06:52:28,496 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-06:52:28,732 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv".
201113-06:52:28,733 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-06:52:28,743 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-06:52:28,750 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-06:52:29,266 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-06:52:29,270 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.ndmg_graphs_0".
201113-06:52:29,271 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-06:52:29,280 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:52:29,509 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph".
201113-06:52:29,511 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-06:52:29,515 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-06:52:29,749 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz".
201113-06:52:29,750 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-06:52:29,757 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:52:29,988 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries".
201113-06:52:29,990 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-06:52:29,996 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-06:52:30,441 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.resample_functional_roi_0".
201113-06:52:30,443 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-06:52:30,448 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-06:52:38,422 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats".
201113-06:52:38,424 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-06:52:38,429 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-06:52:38,664 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv".
201113-06:52:38,665 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-06:52:38,675 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-06:52:38,682 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-06:52:39,200 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-06:52:39,204 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.ndmg_graphs_0".
201113-06:52:39,205 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-06:52:39,212 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:52:39,441 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph".
201113-06:52:39,443 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-06:52:39,447 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-06:52:39,682 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz".
201113-06:52:39,683 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-06:52:39,691 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:52:39,920 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries".
201113-06:52:39,923 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard".
201113-06:52:39,931 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:52:40,162 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard".
201113-06:52:40,164 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-06:52:40,172 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/change_transform_type_0/updated_affine.txt
201113-06:52:42,723 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-06:52:42,725 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/apply_ants_warp_motion_correct_to_standard__t1_0".
201113-06:52:42,896 nipype.workflow INFO:
[Node] Running "apply_ants_warp_motion_correct_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/change_transform_type_0/updated_affine.txt
201113-07:10:26,46 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0".
201113-07:10:26,50 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_correct_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_motion_correct_to_standard".
201113-07:10:26,58 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:10:26,288 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_correct_to_standard".
201113-07:10:26,289 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-07:10:26,316 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/change_transform_type_0/updated_affine.txt
201113-07:10:34,331 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-07:10:34,333 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/apply_ants_warp_mean_functional_to_standard__t1_0".
201113-07:10:34,340 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/change_transform_type_0/updated_affine.txt
201113-07:10:42,290 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0".
201113-07:10:42,293 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.resample_u" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_rest_run-1/resample_u".
201113-07:10:42,297 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-07:10:43,17 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.resample_u".
201113-07:10:43,18 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_rest_run-1/montage_s".
201113-07:10:43,25 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_rest_run-1/montage_s/mapflow/_montage_s0".
201113-07:10:43,29 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-07:10:44,780 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-07:10:44,783 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_s".
201113-07:10:44,783 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_qc___mean_func_with_mni_edge_s".
201113-07:10:44,790 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:10:45,1 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_mni_edge_s/_scan_rest_run-1/_montage_s0/MNI_edge_on_mean_func_mni_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_mni_edge_s/_scan_rest_run-1/_montage_s0/MNI_edge_on_mean_func_mni_s.png
201113-07:10:45,17 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_s".
201113-07:10:45,19 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_rest_run-1/montage_a".
201113-07:10:45,26 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_rest_run-1/montage_a/mapflow/_montage_a0".
201113-07:10:45,30 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-07:10:46,996 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-07:10:47,1 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_a".
201113-07:10:47,1 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_qc___mean_func_with_mni_edge_a".
201113-07:10:47,9 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:10:47,221 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_mni_edge_a/_scan_rest_run-1/_montage_a0/MNI_edge_on_mean_func_mni_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_mni_edge_a/_scan_rest_run-1/_montage_a0/MNI_edge_on_mean_func_mni_a.png
201113-07:10:47,240 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_a".
201113-07:10:47,241 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_rest_run-1/csf_resample".
201113-07:10:47,248 nipype.workflow INFO:
[Node] Running "csf_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_csf_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_rest_run-1/csf_resample/avg152T1_csf_bin.nii.gz
201113-07:10:47,501 nipype.interface INFO:
stderr 2020-11-13T07:10:47.501776:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-07:10:47,502 nipype.interface INFO:
stderr 2020-11-13T07:10:47.502167: Warnings of this type will be muted for this session.
201113-07:10:47,502 nipype.interface INFO:
stderr 2020-11-13T07:10:47.502167: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-07:10:47,774 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_resample".
201113-07:10:47,775 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_rest_run-1/csf_mask".
201113-07:10:47,781 nipype.workflow INFO:
[Node] Running "csf_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_rest_run-1/csf_resample/avg152T1_csf_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_csf_bin_resample_calc.nii
201113-07:10:48,26 nipype.interface INFO:
stderr 2020-11-13T07:10:48.026069:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-07:10:48,26 nipype.interface INFO:
stderr 2020-11-13T07:10:48.026417:++ Authored by: A cast of thousands
201113-07:10:48,153 nipype.interface INFO:
stderr 2020-11-13T07:10:48.153044:++ Output dataset ./avg152T1_csf_bin_resample_calc.nii
201113-07:10:48,314 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_mask".
201113-07:10:48,315 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_rest_run-1/wm_resample".
201113-07:10:48,322 nipype.workflow INFO:
[Node] Running "wm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_white_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_rest_run-1/wm_resample/avg152T1_white_bin.nii.gz
201113-07:10:48,568 nipype.interface INFO:
stderr 2020-11-13T07:10:48.568388:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-07:10:48,568 nipype.interface INFO:
stderr 2020-11-13T07:10:48.568757: Warnings of this type will be muted for this session.
201113-07:10:48,568 nipype.interface INFO:
stderr 2020-11-13T07:10:48.568757: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-07:10:48,789 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_resample".
201113-07:10:48,790 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_rest_run-1/wm_mask".
201113-07:10:48,795 nipype.workflow INFO:
[Node] Running "wm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_rest_run-1/wm_resample/avg152T1_white_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_white_bin_resample_calc.nii
201113-07:10:49,45 nipype.interface INFO:
stderr 2020-11-13T07:10:49.045276:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-07:10:49,45 nipype.interface INFO:
stderr 2020-11-13T07:10:49.045638:++ Authored by: A cast of thousands
201113-07:10:49,170 nipype.interface INFO:
stderr 2020-11-13T07:10:49.170693:++ Output dataset ./avg152T1_white_bin_resample_calc.nii
201113-07:10:49,324 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_mask".
201113-07:10:49,325 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_rest_run-1/gm_resample".
201113-07:10:49,333 nipype.workflow INFO:
[Node] Running "gm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_gray_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_rest_run-1/gm_resample/avg152T1_gray_bin.nii.gz
201113-07:10:49,582 nipype.interface INFO:
stderr 2020-11-13T07:10:49.582881:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-07:10:49,583 nipype.interface INFO:
stderr 2020-11-13T07:10:49.583246: Warnings of this type will be muted for this session.
201113-07:10:49,583 nipype.interface INFO:
stderr 2020-11-13T07:10:49.583246: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-07:10:49,793 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_resample".
201113-07:10:49,794 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_rest_run-1/gm_mask".
201113-07:10:49,799 nipype.workflow INFO:
[Node] Running "gm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_rest_run-1/gm_resample/avg152T1_gray_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_gray_bin_resample_calc.nii
201113-07:10:50,45 nipype.interface INFO:
stderr 2020-11-13T07:10:50.045045:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-07:10:50,45 nipype.interface INFO:
stderr 2020-11-13T07:10:50.045388:++ Authored by: A cast of thousands
201113-07:10:50,159 nipype.interface INFO:
stderr 2020-11-13T07:10:50.159254:++ Output dataset ./avg152T1_gray_bin_resample_calc.nii
201113-07:10:50,318 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_mask".
201113-07:10:50,320 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.carpet_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_plot".
201113-07:10:50,327 nipype.workflow INFO:
[Node] Running "carpet_plot" ("CPAC.utils.interfaces.function.Function")
201113-07:10:58,196 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.carpet_plot".
201113-07:10:58,198 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___carpet" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_qc___carpet".
201113-07:10:58,205 nipype.workflow INFO:
[Node] Running "sinker_0_qc___carpet" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:10:58,419 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___carpet/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/carpet/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png
201113-07:10:58,436 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___carpet".
201113-07:10:58,437 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_mean_functional_to_standard".
201113-07:10:58,444 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:10:58,676 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_to_standard".
201113-07:10:58,677 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-07:10:58,704 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/change_transform_type_0/updated_affine.txt
201113-07:11:01,185 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-07:11:01,188 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-07:11:01,195 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-128_ses-1_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/change_transform_type_0/updated_affine.txt
201113-07:11:03,689 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-07:11:03,691 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/sinker_0_functional_brain_mask_to_standard".
201113-07:11:03,698 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:11:03,927 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask_to_standard".
201113-07:11:03,929 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_rest_run-1/inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-07:11:03,934 nipype.workflow INFO:
[Node] Running "inverse_transform_flags_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-07:11:04,164 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-07:11:04,165 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-07:11:04,198 nipype.workflow INFO:
[Node] Running "collect_transforms_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.base.Merge")
201113-07:11:04,429 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-07:11:04,430 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-07:11:04,435 nipype.workflow INFO:
[Node] Running "check_transformsfunctional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-07:11:04,669 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-07:11:04,671 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-07:11:04,696 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_freq_filtered_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/bandpassed_demeaned_filtered.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output bandpassed_demeaned_filtered_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-07:11:07,298 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-07:11:07,300 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.write_composite_xfm_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/write_composite_xfm_functional_to_standard__t1_0".
201113-07:11:07,325 nipype.workflow INFO:
[Node] Running "write_composite_xfm_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output [ func_to_standard_xfm.nii.gz, 1 ] --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-07:23:04,897 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.write_composite_xfm_functional_to_standard__t1_0".
201113-07:23:04,900 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard_xfm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard_xfm".
201113-07:23:04,909 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:23:05,142 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard_xfm".
201113-07:23:05,143 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0".
201113-07:23:05,151 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-07:35:26,895 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_to_standard__t1_0".
201113-07:35:26,898 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-07:35:26,905 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-07:35:27,359 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.resample_functional_roi_0".
201113-07:35:27,361 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-07:35:27,367 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-07:35:33,676 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats".
201113-07:35:33,678 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-07:35:33,683 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-07:35:33,925 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv".
201113-07:35:33,926 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-07:35:33,972 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-07:35:34,8 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-07:35:34,544 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-07:35:34,548 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.ndmg_graphs_0".
201113-07:35:34,549 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-07:35:34,556 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:35:34,788 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph".
201113-07:35:34,790 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-07:35:34,795 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-07:35:35,29 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz".
201113-07:35:35,31 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-07:35:35,39 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:35:35,271 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries".
201113-07:35:35,273 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-07:35:35,280 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-07:35:35,729 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.resample_functional_roi_0".
201113-07:35:35,731 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-07:35:35,737 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-07:35:42,41 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats".
201113-07:35:42,42 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-07:35:42,47 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-07:35:42,294 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv".
201113-07:35:42,295 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-07:35:42,341 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-07:35:42,377 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-07:35:42,904 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-07:35:42,908 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.ndmg_graphs_0".
201113-07:35:42,908 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-07:35:42,915 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:35:43,147 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph".
201113-07:35:43,149 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-07:35:43,155 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-07:35:43,390 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz".
201113-07:35:43,391 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-07:35:43,398 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:35:43,629 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries".
201113-07:35:43,631 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard".
201113-07:35:43,638 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:35:43,869 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard".
201113-07:35:43,871 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-07:35:43,879 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-07:35:46,499 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-07:35:46,501 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/apply_ants_warp_motion_correct_to_standard__t1_0".
201113-07:35:46,643 nipype.workflow INFO:
[Node] Running "apply_ants_warp_motion_correct_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_motion_correct_mcflirt/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-07:48:16,140 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0".
201113-07:48:16,143 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_correct_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_motion_correct_to_standard".
201113-07:48:16,152 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:48:16,378 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_correct_to_standard".
201113-07:48:16,380 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-07:48:16,418 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-07:48:23,751 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-07:48:23,753 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard__t1_0".
201113-07:48:23,761 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-07:48:31,10 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0".
201113-07:48:31,12 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.resample_u" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_ms_run-1/resample_u".
201113-07:48:31,17 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-07:48:31,729 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.resample_u".
201113-07:48:31,730 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_ms_run-1/montage_s".
201113-07:48:31,736 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_ms_run-1/montage_s/mapflow/_montage_s0".
201113-07:48:31,741 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-07:48:33,491 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-07:48:33,495 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_s".
201113-07:48:33,495 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_qc___mean_func_with_mni_edge_s".
201113-07:48:33,503 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:48:33,712 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_mni_edge_s/_scan_ms_run-1/_montage_s0/MNI_edge_on_mean_func_mni_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_mni_edge_s/_scan_ms_run-1/_montage_s0/MNI_edge_on_mean_func_mni_s.png
201113-07:48:33,729 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_s".
201113-07:48:33,730 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_ms_run-1/montage_a".
201113-07:48:33,737 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_ms_run-1/montage_a/mapflow/_montage_a0".
201113-07:48:33,741 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-07:48:35,720 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-07:48:35,723 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_a".
201113-07:48:35,724 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_qc___mean_func_with_mni_edge_a".
201113-07:48:35,731 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:48:35,943 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_mni_edge_a/_scan_ms_run-1/_montage_a0/MNI_edge_on_mean_func_mni_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_mni_edge_a/_scan_ms_run-1/_montage_a0/MNI_edge_on_mean_func_mni_a.png
201113-07:48:35,962 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_a".
201113-07:48:35,963 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_ms_run-1/csf_resample".
201113-07:48:35,970 nipype.workflow INFO:
[Node] Running "csf_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_csf_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_ms_run-1/csf_resample/avg152T1_csf_bin.nii.gz
201113-07:48:36,221 nipype.interface INFO:
stderr 2020-11-13T07:48:36.221852:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-07:48:36,222 nipype.interface INFO:
stderr 2020-11-13T07:48:36.222234: Warnings of this type will be muted for this session.
201113-07:48:36,222 nipype.interface INFO:
stderr 2020-11-13T07:48:36.222234: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-07:48:36,482 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_resample".
201113-07:48:36,483 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_ms_run-1/csf_mask".
201113-07:48:36,490 nipype.workflow INFO:
[Node] Running "csf_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_ms_run-1/csf_resample/avg152T1_csf_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_csf_bin_resample_calc.nii
201113-07:48:36,737 nipype.interface INFO:
stderr 2020-11-13T07:48:36.737389:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-07:48:36,737 nipype.interface INFO:
stderr 2020-11-13T07:48:36.737757:++ Authored by: A cast of thousands
201113-07:48:36,853 nipype.interface INFO:
stderr 2020-11-13T07:48:36.853351:++ Output dataset ./avg152T1_csf_bin_resample_calc.nii
201113-07:48:37,13 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_mask".
201113-07:48:37,14 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_ms_run-1/wm_resample".
201113-07:48:37,21 nipype.workflow INFO:
[Node] Running "wm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_white_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_ms_run-1/wm_resample/avg152T1_white_bin.nii.gz
201113-07:48:37,267 nipype.interface INFO:
stderr 2020-11-13T07:48:37.267137:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-07:48:37,267 nipype.interface INFO:
stderr 2020-11-13T07:48:37.267507: Warnings of this type will be muted for this session.
201113-07:48:37,267 nipype.interface INFO:
stderr 2020-11-13T07:48:37.267507: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-07:48:37,489 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_resample".
201113-07:48:37,491 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_ms_run-1/wm_mask".
201113-07:48:37,496 nipype.workflow INFO:
[Node] Running "wm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_ms_run-1/wm_resample/avg152T1_white_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_white_bin_resample_calc.nii
201113-07:48:37,745 nipype.interface INFO:
stderr 2020-11-13T07:48:37.745054:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-07:48:37,745 nipype.interface INFO:
stderr 2020-11-13T07:48:37.745417:++ Authored by: A cast of thousands
201113-07:48:37,864 nipype.interface INFO:
stderr 2020-11-13T07:48:37.864539:++ Output dataset ./avg152T1_white_bin_resample_calc.nii
201113-07:48:38,22 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_mask".
201113-07:48:38,23 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_ms_run-1/gm_resample".
201113-07:48:38,30 nipype.workflow INFO:
[Node] Running "gm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_gray_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_ms_run-1/gm_resample/avg152T1_gray_bin.nii.gz
201113-07:48:38,278 nipype.interface INFO:
stderr 2020-11-13T07:48:38.278692:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-07:48:38,279 nipype.interface INFO:
stderr 2020-11-13T07:48:38.279141: Warnings of this type will be muted for this session.
201113-07:48:38,279 nipype.interface INFO:
stderr 2020-11-13T07:48:38.279141: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-07:48:38,495 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_resample".
201113-07:48:38,496 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_ms_run-1/gm_mask".
201113-07:48:38,501 nipype.workflow INFO:
[Node] Running "gm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_ms_run-1/gm_resample/avg152T1_gray_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_gray_bin_resample_calc.nii
201113-07:48:38,747 nipype.interface INFO:
stderr 2020-11-13T07:48:38.747559:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-07:48:38,747 nipype.interface INFO:
stderr 2020-11-13T07:48:38.747910:++ Authored by: A cast of thousands
201113-07:48:38,864 nipype.interface INFO:
stderr 2020-11-13T07:48:38.864687:++ Output dataset ./avg152T1_gray_bin_resample_calc.nii
201113-07:48:39,25 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_mask".
201113-07:48:39,26 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.carpet_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_plot".
201113-07:48:39,34 nipype.workflow INFO:
[Node] Running "carpet_plot" ("CPAC.utils.interfaces.function.Function")
201113-07:48:45,274 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.carpet_plot".
201113-07:48:45,276 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___carpet" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_qc___carpet".
201113-07:48:45,284 nipype.workflow INFO:
[Node] Running "sinker_0_qc___carpet" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:48:45,494 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___carpet/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/carpet/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png
201113-07:48:45,514 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___carpet".
201113-07:48:45,515 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_mean_functional_to_standard".
201113-07:48:45,522 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:48:45,749 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_to_standard".
201113-07:48:45,751 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-07:48:45,777 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-07:48:48,308 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-07:48:48,310 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-07:48:48,317 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-128_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-07:48:50,814 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-07:48:50,816 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/sinker_0_functional_brain_mask_to_standard".
201113-07:48:50,823 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:48:51,54 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask_to_standard".
201113-07:48:51,55 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_ms_run-1/inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-07:48:51,60 nipype.workflow INFO:
[Node] Running "inverse_transform_flags_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-07:48:51,287 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-07:48:51,289 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-07:48:51,321 nipype.workflow INFO:
[Node] Running "collect_transforms_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.base.Merge")
201113-07:48:51,550 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-07:48:51,552 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-07:48:51,557 nipype.workflow INFO:
[Node] Running "check_transformsfunctional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-07:48:51,790 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-07:48:51,791 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-07:48:51,817 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_freq_filtered_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/bandpassed_demeaned_filtered.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output bandpassed_demeaned_filtered_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-07:48:54,495 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-07:48:54,496 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.write_composite_xfm_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/write_composite_xfm_functional_to_standard__t1_0".
201113-07:48:54,526 nipype.workflow INFO:
[Node] Running "write_composite_xfm_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output [ func_to_standard_xfm.nii.gz, 1 ] --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-07:57:22,795 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.write_composite_xfm_functional_to_standard__t1_0".
201113-07:57:22,797 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard_xfm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard_xfm".
201113-07:57:22,805 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:57:23,35 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard_xfm".
201113-07:57:23,37 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0".
201113-07:57:23,44 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-08:06:05,685 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_to_standard__t1_0".
201113-08:06:05,687 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-08:06:05,694 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-08:06:06,161 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.resample_functional_roi_0".
201113-08:06:06,163 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-08:06:06,169 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-08:06:10,655 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats".
201113-08:06:10,656 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-08:06:10,660 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-08:06:10,899 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv".
201113-08:06:10,901 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-08:06:10,936 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-08:06:10,965 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-08:06:11,494 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-08:06:11,498 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.ndmg_graphs_0".
201113-08:06:11,498 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-08:06:11,505 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:06:11,736 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph".
201113-08:06:11,738 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-08:06:11,742 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-08:06:11,971 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz".
201113-08:06:11,973 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-08:06:11,980 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:06:12,212 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries".
201113-08:06:12,214 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-08:06:12,219 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-08:06:12,663 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.resample_functional_roi_0".
201113-08:06:12,664 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-08:06:12,672 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-08:06:17,183 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats".
201113-08:06:17,185 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-08:06:17,189 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-08:06:17,429 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv".
201113-08:06:17,430 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-08:06:17,465 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-08:06:17,492 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-08:06:18,13 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-08:06:18,17 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.ndmg_graphs_0".
201113-08:06:18,17 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-08:06:18,26 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:06:18,257 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph".
201113-08:06:18,260 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-08:06:18,264 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-08:06:18,492 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz".
201113-08:06:18,493 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-08:06:18,500 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:06:18,730 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries".
201113-08:06:18,732 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard".
201113-08:06:18,739 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:06:18,968 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard".
201113-08:06:18,970 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-08:06:18,978 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-08:06:21,599 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-08:06:21,601 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/apply_ants_warp_motion_correct_to_standard__t1_0".
201113-08:06:21,712 nipype.workflow INFO:
[Node] Running "apply_ants_warp_motion_correct_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_motion_correct_mcflirt/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-08:15:10,985 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0".
201113-08:15:10,987 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_correct_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_motion_correct_to_standard".
201113-08:15:10,996 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:15:11,225 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_correct_to_standard".
201113-08:15:11,227 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-08:15:11,255 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-08:15:18,625 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-08:15:18,627 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard__t1_0".
201113-08:15:18,635 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-08:15:25,945 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0".
201113-08:15:25,947 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.resample_u" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_matching_run-3/resample_u".
201113-08:15:25,952 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-08:15:26,663 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.resample_u".
201113-08:15:26,665 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_matching_run-3/montage_s".
201113-08:15:26,672 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_matching_run-3/montage_s/mapflow/_montage_s0".
201113-08:15:26,676 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-08:15:28,440 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-08:15:28,443 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_s".
201113-08:15:28,444 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_qc___mean_func_with_mni_edge_s".
201113-08:15:28,451 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:15:28,662 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_mni_edge_s/_scan_matching_run-3/_montage_s0/MNI_edge_on_mean_func_mni_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_mni_edge_s/_scan_matching_run-3/_montage_s0/MNI_edge_on_mean_func_mni_s.png
201113-08:15:28,680 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_s".
201113-08:15:28,681 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_matching_run-3/montage_a".
201113-08:15:28,688 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_matching_run-3/montage_a/mapflow/_montage_a0".
201113-08:15:28,692 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-08:15:30,682 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-08:15:30,685 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_a".
201113-08:15:30,685 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_qc___mean_func_with_mni_edge_a".
201113-08:15:30,692 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:15:30,902 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_mni_edge_a/_scan_matching_run-3/_montage_a0/MNI_edge_on_mean_func_mni_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_mni_edge_a/_scan_matching_run-3/_montage_a0/MNI_edge_on_mean_func_mni_a.png
201113-08:15:30,918 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_a".
201113-08:15:30,920 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-3/csf_resample".
201113-08:15:30,926 nipype.workflow INFO:
[Node] Running "csf_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_csf_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-3/csf_resample/avg152T1_csf_bin.nii.gz
201113-08:15:31,182 nipype.interface INFO:
stderr 2020-11-13T08:15:31.182320:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-08:15:31,183 nipype.interface INFO:
stderr 2020-11-13T08:15:31.183128: Warnings of this type will be muted for this session.
201113-08:15:31,183 nipype.interface INFO:
stderr 2020-11-13T08:15:31.183128: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-08:15:31,409 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_resample".
201113-08:15:31,410 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-3/csf_mask".
201113-08:15:31,416 nipype.workflow INFO:
[Node] Running "csf_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-3/csf_resample/avg152T1_csf_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_csf_bin_resample_calc.nii
201113-08:15:31,664 nipype.interface INFO:
stderr 2020-11-13T08:15:31.664406:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:15:31,665 nipype.interface INFO:
stderr 2020-11-13T08:15:31.664988:++ Authored by: A cast of thousands
201113-08:15:31,756 nipype.interface INFO:
stderr 2020-11-13T08:15:31.756805:++ Output dataset ./avg152T1_csf_bin_resample_calc.nii
201113-08:15:31,920 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_mask".
201113-08:15:31,921 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-3/wm_resample".
201113-08:15:31,928 nipype.workflow INFO:
[Node] Running "wm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_white_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-3/wm_resample/avg152T1_white_bin.nii.gz
201113-08:15:32,178 nipype.interface INFO:
stderr 2020-11-13T08:15:32.178436:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-08:15:32,178 nipype.interface INFO:
stderr 2020-11-13T08:15:32.178787: Warnings of this type will be muted for this session.
201113-08:15:32,178 nipype.interface INFO:
stderr 2020-11-13T08:15:32.178787: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-08:15:32,395 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_resample".
201113-08:15:32,396 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-3/wm_mask".
201113-08:15:32,401 nipype.workflow INFO:
[Node] Running "wm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-3/wm_resample/avg152T1_white_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_white_bin_resample_calc.nii
201113-08:15:32,646 nipype.interface INFO:
stderr 2020-11-13T08:15:32.646447:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:15:32,646 nipype.interface INFO:
stderr 2020-11-13T08:15:32.646792:++ Authored by: A cast of thousands
201113-08:15:32,747 nipype.interface INFO:
stderr 2020-11-13T08:15:32.747850:++ Output dataset ./avg152T1_white_bin_resample_calc.nii
201113-08:15:32,912 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_mask".
201113-08:15:32,913 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-3/gm_resample".
201113-08:15:32,920 nipype.workflow INFO:
[Node] Running "gm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_gray_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-3/gm_resample/avg152T1_gray_bin.nii.gz
201113-08:15:33,166 nipype.interface INFO:
stderr 2020-11-13T08:15:33.166793:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-08:15:33,167 nipype.interface INFO:
stderr 2020-11-13T08:15:33.167165: Warnings of this type will be muted for this session.
201113-08:15:33,167 nipype.interface INFO:
stderr 2020-11-13T08:15:33.167165: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-08:15:33,363 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_resample".
201113-08:15:33,364 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-3/gm_mask".
201113-08:15:33,369 nipype.workflow INFO:
[Node] Running "gm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-3/gm_resample/avg152T1_gray_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_gray_bin_resample_calc.nii
201113-08:15:33,614 nipype.interface INFO:
stderr 2020-11-13T08:15:33.614618:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:15:33,614 nipype.interface INFO:
stderr 2020-11-13T08:15:33.614955:++ Authored by: A cast of thousands
201113-08:15:33,734 nipype.interface INFO:
stderr 2020-11-13T08:15:33.734585:++ Output dataset ./avg152T1_gray_bin_resample_calc.nii
201113-08:15:33,892 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_mask".
201113-08:15:33,894 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.carpet_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_plot".
201113-08:15:33,900 nipype.workflow INFO:
[Node] Running "carpet_plot" ("CPAC.utils.interfaces.function.Function")
201113-08:15:38,373 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.carpet_plot".
201113-08:15:38,374 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___carpet" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_qc___carpet".
201113-08:15:38,382 nipype.workflow INFO:
[Node] Running "sinker_0_qc___carpet" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:15:38,592 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___carpet/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/carpet/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png
201113-08:15:38,609 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___carpet".
201113-08:15:38,611 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_mean_functional_to_standard".
201113-08:15:38,618 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:15:38,847 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_to_standard".
201113-08:15:38,849 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-08:15:38,877 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-08:15:41,369 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-08:15:41,372 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-08:15:41,380 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-128_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-08:15:43,842 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-08:15:43,844 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/sinker_0_functional_brain_mask_to_standard".
201113-08:15:43,854 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:15:44,80 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask_to_standard".
201113-08:15:44,81 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-3/inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-08:15:44,86 nipype.workflow INFO:
[Node] Running "inverse_transform_flags_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-08:15:44,316 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-08:15:44,317 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-08:15:44,353 nipype.workflow INFO:
[Node] Running "collect_transforms_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.base.Merge")
201113-08:15:44,581 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-08:15:44,583 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-08:15:44,589 nipype.workflow INFO:
[Node] Running "check_transformsfunctional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-08:15:44,822 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-08:15:44,823 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-08:15:44,854 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_freq_filtered_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/bandpassed_demeaned_filtered.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output bandpassed_demeaned_filtered_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-08:15:47,497 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-08:15:47,499 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.write_composite_xfm_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/write_composite_xfm_functional_to_standard__t1_0".
201113-08:15:47,511 nipype.workflow INFO:
[Node] Running "write_composite_xfm_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output [ func_to_standard_xfm.nii.gz, 1 ] --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-08:24:17,57 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.write_composite_xfm_functional_to_standard__t1_0".
201113-08:24:17,60 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard_xfm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard_xfm".
201113-08:24:17,69 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:24:17,297 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard_xfm".
201113-08:24:17,299 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0".
201113-08:24:17,306 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-08:33:01,94 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_to_standard__t1_0".
201113-08:33:01,97 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-08:33:01,104 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-08:33:01,552 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.resample_functional_roi_0".
201113-08:33:01,554 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-08:33:01,560 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-08:33:06,64 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats".
201113-08:33:06,65 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-08:33:06,70 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-08:33:06,308 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv".
201113-08:33:06,310 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-08:33:06,345 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-08:33:06,372 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-08:33:06,896 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-08:33:06,901 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.ndmg_graphs_0".
201113-08:33:06,902 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-08:33:06,908 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:33:07,138 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph".
201113-08:33:07,140 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-08:33:07,144 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-08:33:07,372 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz".
201113-08:33:07,373 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-08:33:07,380 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:33:07,608 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries".
201113-08:33:07,610 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-08:33:07,616 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-08:33:08,62 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.resample_functional_roi_0".
201113-08:33:08,63 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-08:33:08,69 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-08:33:12,559 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats".
201113-08:33:12,561 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-08:33:12,565 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-08:33:12,808 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv".
201113-08:33:12,809 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-08:33:12,844 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-08:33:12,871 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-08:33:13,391 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-08:33:13,395 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.ndmg_graphs_0".
201113-08:33:13,395 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-08:33:13,404 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:33:13,630 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph".
201113-08:33:13,632 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-08:33:13,636 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-08:33:13,869 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz".
201113-08:33:13,870 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-08:33:13,877 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:33:14,107 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries".
201113-08:33:14,109 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard".
201113-08:33:14,117 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:33:14,348 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard".
201113-08:33:14,350 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-08:33:14,358 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-08:33:16,991 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-08:33:16,993 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/apply_ants_warp_motion_correct_to_standard__t1_0".
201113-08:33:17,108 nipype.workflow INFO:
[Node] Running "apply_ants_warp_motion_correct_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_motion_correct_mcflirt/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-08:42:07,110 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0".
201113-08:42:07,112 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_correct_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_motion_correct_to_standard".
201113-08:42:07,122 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:42:07,348 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_correct_to_standard".
201113-08:42:07,350 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-08:42:07,372 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-08:42:14,764 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-08:42:14,766 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard__t1_0".
201113-08:42:14,773 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-08:42:22,96 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0".
201113-08:42:22,98 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.resample_u" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_matching_run-2/resample_u".
201113-08:42:22,103 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-08:42:22,823 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.resample_u".
201113-08:42:22,824 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_matching_run-2/montage_s".
201113-08:42:22,830 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_matching_run-2/montage_s/mapflow/_montage_s0".
201113-08:42:22,834 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-08:42:24,586 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-08:42:24,590 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_s".
201113-08:42:24,590 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_qc___mean_func_with_mni_edge_s".
201113-08:42:24,598 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:42:24,810 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_mni_edge_s/_scan_matching_run-2/_montage_s0/MNI_edge_on_mean_func_mni_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_mni_edge_s/_scan_matching_run-2/_montage_s0/MNI_edge_on_mean_func_mni_s.png
201113-08:42:24,827 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_s".
201113-08:42:24,829 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_matching_run-2/montage_a".
201113-08:42:24,836 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_matching_run-2/montage_a/mapflow/_montage_a0".
201113-08:42:24,840 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-08:42:26,836 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-08:42:26,839 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_a".
201113-08:42:26,840 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_qc___mean_func_with_mni_edge_a".
201113-08:42:26,848 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:42:27,60 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_mni_edge_a/_scan_matching_run-2/_montage_a0/MNI_edge_on_mean_func_mni_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_mni_edge_a/_scan_matching_run-2/_montage_a0/MNI_edge_on_mean_func_mni_a.png
201113-08:42:27,77 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_a".
201113-08:42:27,79 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-2/csf_resample".
201113-08:42:27,85 nipype.workflow INFO:
[Node] Running "csf_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_csf_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-2/csf_resample/avg152T1_csf_bin.nii.gz
201113-08:42:27,357 nipype.interface INFO:
stderr 2020-11-13T08:42:27.356978:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-08:42:27,357 nipype.interface INFO:
stderr 2020-11-13T08:42:27.357345: Warnings of this type will be muted for this session.
201113-08:42:27,357 nipype.interface INFO:
stderr 2020-11-13T08:42:27.357345: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-08:42:27,602 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_resample".
201113-08:42:27,604 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-2/csf_mask".
201113-08:42:27,611 nipype.workflow INFO:
[Node] Running "csf_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-2/csf_resample/avg152T1_csf_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_csf_bin_resample_calc.nii
201113-08:42:27,858 nipype.interface INFO:
stderr 2020-11-13T08:42:27.858728:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:42:27,859 nipype.interface INFO:
stderr 2020-11-13T08:42:27.859102:++ Authored by: A cast of thousands
201113-08:42:27,976 nipype.interface INFO:
stderr 2020-11-13T08:42:27.976056:++ Output dataset ./avg152T1_csf_bin_resample_calc.nii
201113-08:42:28,138 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_mask".
201113-08:42:28,139 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-2/wm_resample".
201113-08:42:28,146 nipype.workflow INFO:
[Node] Running "wm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_white_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-2/wm_resample/avg152T1_white_bin.nii.gz
201113-08:42:28,397 nipype.interface INFO:
stderr 2020-11-13T08:42:28.397155:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-08:42:28,397 nipype.interface INFO:
stderr 2020-11-13T08:42:28.397538: Warnings of this type will be muted for this session.
201113-08:42:28,397 nipype.interface INFO:
stderr 2020-11-13T08:42:28.397538: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-08:42:28,619 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_resample".
201113-08:42:28,621 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-2/wm_mask".
201113-08:42:28,626 nipype.workflow INFO:
[Node] Running "wm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-2/wm_resample/avg152T1_white_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_white_bin_resample_calc.nii
201113-08:42:28,876 nipype.interface INFO:
stderr 2020-11-13T08:42:28.876265:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:42:28,876 nipype.interface INFO:
stderr 2020-11-13T08:42:28.876640:++ Authored by: A cast of thousands
201113-08:42:28,971 nipype.interface INFO:
stderr 2020-11-13T08:42:28.971555:++ Output dataset ./avg152T1_white_bin_resample_calc.nii
201113-08:42:29,136 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_mask".
201113-08:42:29,137 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-2/gm_resample".
201113-08:42:29,144 nipype.workflow INFO:
[Node] Running "gm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_gray_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-2/gm_resample/avg152T1_gray_bin.nii.gz
201113-08:42:29,396 nipype.interface INFO:
stderr 2020-11-13T08:42:29.396724:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-08:42:29,397 nipype.interface INFO:
stderr 2020-11-13T08:42:29.397121: Warnings of this type will be muted for this session.
201113-08:42:29,397 nipype.interface INFO:
stderr 2020-11-13T08:42:29.397121: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-08:42:29,622 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_resample".
201113-08:42:29,624 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-2/gm_mask".
201113-08:42:29,629 nipype.workflow INFO:
[Node] Running "gm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-2/gm_resample/avg152T1_gray_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_gray_bin_resample_calc.nii
201113-08:42:29,876 nipype.interface INFO:
stderr 2020-11-13T08:42:29.876901:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:42:29,877 nipype.interface INFO:
stderr 2020-11-13T08:42:29.877261:++ Authored by: A cast of thousands
201113-08:42:30,1 nipype.interface INFO:
stderr 2020-11-13T08:42:30.001850:++ Output dataset ./avg152T1_gray_bin_resample_calc.nii
201113-08:42:30,161 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_mask".
201113-08:42:30,163 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.carpet_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_plot".
201113-08:42:30,169 nipype.workflow INFO:
[Node] Running "carpet_plot" ("CPAC.utils.interfaces.function.Function")
201113-08:42:34,666 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.carpet_plot".
201113-08:42:34,668 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___carpet" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_qc___carpet".
201113-08:42:34,675 nipype.workflow INFO:
[Node] Running "sinker_0_qc___carpet" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:42:34,888 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___carpet/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/carpet/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png
201113-08:42:34,906 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___carpet".
201113-08:42:34,908 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_mean_functional_to_standard".
201113-08:42:34,915 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:42:35,146 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_to_standard".
201113-08:42:35,148 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-08:42:35,182 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-08:42:37,695 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-08:42:37,697 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-08:42:37,707 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-128_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-08:42:40,175 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-08:42:40,176 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/sinker_0_functional_brain_mask_to_standard".
201113-08:42:40,185 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:42:40,416 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask_to_standard".
201113-08:42:40,417 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-2/inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-08:42:40,423 nipype.workflow INFO:
[Node] Running "inverse_transform_flags_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-08:42:40,649 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-08:42:40,651 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-08:42:40,685 nipype.workflow INFO:
[Node] Running "collect_transforms_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.base.Merge")
201113-08:42:40,916 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-08:42:40,918 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-08:42:40,922 nipype.workflow INFO:
[Node] Running "check_transformsfunctional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-08:42:41,152 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-08:42:41,154 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-08:42:41,184 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_freq_filtered_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/frequency_filtering_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/bandpassed_demeaned_filtered.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output bandpassed_demeaned_filtered_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-08:42:43,797 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-08:42:43,799 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.write_composite_xfm_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/write_composite_xfm_functional_to_standard__t1_0".
201113-08:42:43,824 nipype.workflow INFO:
[Node] Running "write_composite_xfm_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output [ func_to_standard_xfm.nii.gz, 1 ] --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-08:51:13,30 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.write_composite_xfm_functional_to_standard__t1_0".
201113-08:51:13,32 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard_xfm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard_xfm".
201113-08:51:13,41 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:51:13,268 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard_xfm".
201113-08:51:13,270 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0".
201113-08:51:13,277 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-08:59:57,77 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_to_standard__t1_0".
201113-08:59:57,80 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-08:59:57,87 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-08:59:57,539 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.resample_functional_roi_0".
201113-08:59:57,541 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-08:59:57,547 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-09:00:02,81 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats".
201113-09:00:02,83 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-09:00:02,87 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-09:00:02,328 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv".
201113-09:00:02,329 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-09:00:02,365 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-09:00:02,392 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-09:00:02,913 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-09:00:02,916 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.ndmg_graphs_0".
201113-09:00:02,917 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-09:00:02,923 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:00:03,152 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph".
201113-09:00:03,153 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-09:00:03,157 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-09:00:03,388 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz".
201113-09:00:03,390 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-09:00:03,396 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:00:03,628 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries".
201113-09:00:03,630 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-09:00:03,635 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-09:00:04,82 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.resample_functional_roi_0".
201113-09:00:04,83 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-09:00:04,89 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-09:00:08,684 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.3dROIstats".
201113-09:00:08,685 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-09:00:08,690 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-09:00:08,929 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.clean_roi_csv".
201113-09:00:08,930 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-09:00:08,967 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-09:00:08,994 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-09:00:09,517 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-09:00:09,521 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.ndmg_graphs_0".
201113-09:00:09,521 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-09:00:09,530 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:00:09,763 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_ndmg_graph".
201113-09:00:09,764 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-128_ses-1/roi_timeseries_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-09:00:09,768 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-09:00:10,0 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.roi_timeseries_0.write_roi_npz".
201113-09:00:10,2 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-09:00:10,9 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:00:10,243 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_roi_timeseries".
201113-09:00:10,245 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard".
201113-09:00:10,252 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:00:10,481 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_to_standard".
201113-09:00:10,482 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-09:00:10,490 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-09:00:13,134 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-09:00:13,136 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/apply_ants_warp_motion_correct_to_standard__t1_0".
201113-09:00:13,270 nipype.workflow INFO:
[Node] Running "apply_ants_warp_motion_correct_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_motion_correct_mcflirt/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-09:09:04,235 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0".
201113-09:09:04,238 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_motion_correct_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_motion_correct_to_standard".
201113-09:09:04,246 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:09:04,476 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_motion_correct_to_standard".
201113-09:09:04,478 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-09:09:04,508 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-09:09:11,885 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-09:09:11,887 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard__t1_0".
201113-09:09:11,895 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-09:09:19,232 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0".
201113-09:09:19,234 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.resample_u" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_matching_run-1/resample_u".
201113-09:09:19,238 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-09:09:19,957 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.resample_u".
201113-09:09:19,958 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_matching_run-1/montage_s".
201113-09:09:19,965 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_matching_run-1/montage_s/mapflow/_montage_s0".
201113-09:09:19,969 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-09:09:21,726 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-09:09:21,729 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_s".
201113-09:09:21,730 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_qc___mean_func_with_mni_edge_s".
201113-09:09:21,738 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:09:21,950 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_mni_edge_s/_scan_matching_run-1/_montage_s0/MNI_edge_on_mean_func_mni_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_mni_edge_s/_scan_matching_run-1/_montage_s0/MNI_edge_on_mean_func_mni_s.png
201113-09:09:21,968 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_s".
201113-09:09:21,970 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_matching_run-1/montage_a".
201113-09:09:21,977 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mfi_0/_scan_matching_run-1/montage_a/mapflow/_montage_a0".
201113-09:09:21,983 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-09:09:23,972 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-09:09:23,975 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mfi_0.montage_a".
201113-09:09:23,976 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_qc___mean_func_with_mni_edge_a".
201113-09:09:23,983 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:09:24,192 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mean_func_with_mni_edge_a/_scan_matching_run-1/_montage_a0/MNI_edge_on_mean_func_mni_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mean_func_with_mni_edge_a/_scan_matching_run-1/_montage_a0/MNI_edge_on_mean_func_mni_a.png
201113-09:09:24,209 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mean_func_with_mni_edge_a".
201113-09:09:24,210 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-1/csf_resample".
201113-09:09:24,218 nipype.workflow INFO:
[Node] Running "csf_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_csf_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-1/csf_resample/avg152T1_csf_bin.nii.gz
201113-09:09:24,479 nipype.interface INFO:
stderr 2020-11-13T09:09:24.479052:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-09:09:24,479 nipype.interface INFO:
stderr 2020-11-13T09:09:24.479644: Warnings of this type will be muted for this session.
201113-09:09:24,479 nipype.interface INFO:
stderr 2020-11-13T09:09:24.479644: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-09:09:24,737 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_resample".
201113-09:09:24,739 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-1/csf_mask".
201113-09:09:24,744 nipype.workflow INFO:
[Node] Running "csf_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-1/csf_resample/avg152T1_csf_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_csf_bin_resample_calc.nii
201113-09:09:24,989 nipype.interface INFO:
stderr 2020-11-13T09:09:24.989452:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:09:24,989 nipype.interface INFO:
stderr 2020-11-13T09:09:24.989818:++ Authored by: A cast of thousands
201113-09:09:25,109 nipype.interface INFO:
stderr 2020-11-13T09:09:25.109070:++ Output dataset ./avg152T1_csf_bin_resample_calc.nii
201113-09:09:25,268 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.csf_mask".
201113-09:09:25,270 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-1/wm_resample".
201113-09:09:25,277 nipype.workflow INFO:
[Node] Running "wm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_white_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-1/wm_resample/avg152T1_white_bin.nii.gz
201113-09:09:25,525 nipype.interface INFO:
stderr 2020-11-13T09:09:25.525026:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-09:09:25,525 nipype.interface INFO:
stderr 2020-11-13T09:09:25.525374: Warnings of this type will be muted for this session.
201113-09:09:25,525 nipype.interface INFO:
stderr 2020-11-13T09:09:25.525374: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-09:09:25,753 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_resample".
201113-09:09:25,754 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-1/wm_mask".
201113-09:09:25,760 nipype.workflow INFO:
[Node] Running "wm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-1/wm_resample/avg152T1_white_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_white_bin_resample_calc.nii
201113-09:09:26,5 nipype.interface INFO:
stderr 2020-11-13T09:09:26.005234:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:09:26,5 nipype.interface INFO:
stderr 2020-11-13T09:09:26.005583:++ Authored by: A cast of thousands
201113-09:09:26,132 nipype.interface INFO:
stderr 2020-11-13T09:09:26.132418:++ Output dataset ./avg152T1_white_bin_resample_calc.nii
201113-09:09:26,297 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.wm_mask".
201113-09:09:26,298 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_resample" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-1/gm_resample".
201113-09:09:26,305 nipype.workflow INFO:
[Node] Running "gm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_gray_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-1/gm_resample/avg152T1_gray_bin.nii.gz
201113-09:09:26,554 nipype.interface INFO:
stderr 2020-11-13T09:09:26.553974:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-09:09:26,554 nipype.interface INFO:
stderr 2020-11-13T09:09:26.554318: Warnings of this type will be muted for this session.
201113-09:09:26,554 nipype.interface INFO:
stderr 2020-11-13T09:09:26.554318: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-09:09:26,775 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_resample".
201113-09:09:26,776 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-1/gm_mask".
201113-09:09:26,782 nipype.workflow INFO:
[Node] Running "gm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-1/gm_resample/avg152T1_gray_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_gray_bin_resample_calc.nii
201113-09:09:27,29 nipype.interface INFO:
stderr 2020-11-13T09:09:27.029916:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:09:27,30 nipype.interface INFO:
stderr 2020-11-13T09:09:27.030287:++ Authored by: A cast of thousands
201113-09:09:27,148 nipype.interface INFO:
stderr 2020-11-13T09:09:27.148543:++ Output dataset ./avg152T1_gray_bin_resample_calc.nii
201113-09:09:27,316 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.gm_mask".
201113-09:09:27,318 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.carpet_seg_0.carpet_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-1/carpet_seg_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_plot".
201113-09:09:27,325 nipype.workflow INFO:
[Node] Running "carpet_plot" ("CPAC.utils.interfaces.function.Function")
201113-09:09:31,751 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.carpet_seg_0.carpet_plot".
201113-09:09:31,753 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___carpet" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_qc___carpet".
201113-09:09:31,759 nipype.workflow INFO:
[Node] Running "sinker_0_qc___carpet" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:09:31,971 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___carpet/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/carpet/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png
201113-09:09:31,989 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___carpet".
201113-09:09:31,991 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_mean_functional_to_standard".
201113-09:09:31,999 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:09:32,229 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_mean_functional_to_standard".
201113-09:09:32,231 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-09:09:32,260 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-09:09:34,761 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-09:09:34,763 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-09:09:34,771 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-128_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-128_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-128_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-09:09:37,244 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-09:09:37,246 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask_to_standard" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/sinker_0_functional_brain_mask_to_standard".
201113-09:09:37,253 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:09:37,480 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_functional_brain_mask_to_standard".
201113-09:09:37,482 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/_scan_matching_run-1/inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-09:09:37,487 nipype.workflow INFO:
[Node] Running "inverse_transform_flags_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-09:09:37,716 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-09:09:37,717 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.seg_preproc_0.GM.GM_collect_linear_transforms" in "/outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/GM/GM_collect_linear_transforms".
201113-09:09:37,725 nipype.workflow INFO:
[Node] Running "GM_collect_linear_transforms" ("nipype.interfaces.utility.base.Merge")
201113-09:09:37,956 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.seg_preproc_0.GM.GM_collect_linear_transforms".
201113-09:09:37,958 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.seg_preproc_0.GM.GM_check_transforms" in "/outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/GM/GM_check_transforms".
201113-09:09:37,962 nipype.workflow INFO:
[Node] Running "GM_check_transforms" ("nipype.interfaces.utility.wrappers.Function")
201113-09:09:38,193 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.seg_preproc_0.GM.GM_check_transforms".
201113-09:09:38,194 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.seg_preproc_0.GM.GM_inverse_transform_flags" in "/outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/GM/GM_inverse_transform_flags".
201113-09:09:38,199 nipype.workflow INFO:
[Node] Running "GM_inverse_transform_flags" ("nipype.interfaces.utility.wrappers.Function")
201113-09:09:38,431 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.seg_preproc_0.GM.GM_inverse_transform_flags".
201113-09:09:38,433 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.seg_preproc_0.GM.GM_prior_mni_to_t1" in "/outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/GM/GM_prior_mni_to_t1".
201113-09:09:38,464 nipype.workflow INFO:
[Node] Running "GM_prior_mni_to_t1" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 0 --input /usr/share/fsl/5.0/data/standard/tissuepriors/2mm/avg152T1_gray_bin.nii.gz --interpolation NearestNeighbor --output avg152T1_gray_bin_trans.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz --transform [ /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat, 1 ]
201113-09:09:39,938 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.seg_preproc_0.GM.GM_prior_mni_to_t1".
201113-09:09:39,940 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.seg_preproc_0.WM.WM_collect_linear_transforms" in "/outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/WM/WM_collect_linear_transforms".
201113-09:09:39,946 nipype.workflow INFO:
[Node] Running "WM_collect_linear_transforms" ("nipype.interfaces.utility.base.Merge")
201113-09:09:40,175 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.seg_preproc_0.WM.WM_collect_linear_transforms".
201113-09:09:40,176 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.seg_preproc_0.WM.WM_check_transforms" in "/outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/WM/WM_check_transforms".
201113-09:09:40,181 nipype.workflow INFO:
[Node] Running "WM_check_transforms" ("nipype.interfaces.utility.wrappers.Function")
201113-09:09:40,407 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.seg_preproc_0.WM.WM_check_transforms".
201113-09:09:40,409 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.seg_preproc_0.WM.WM_inverse_transform_flags" in "/outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/WM/WM_inverse_transform_flags".
201113-09:09:40,413 nipype.workflow INFO:
[Node] Running "WM_inverse_transform_flags" ("nipype.interfaces.utility.wrappers.Function")
201113-09:09:40,639 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.seg_preproc_0.WM.WM_inverse_transform_flags".
201113-09:09:40,641 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.seg_preproc_0.WM.WM_prior_mni_to_t1" in "/outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/WM/WM_prior_mni_to_t1".
201113-09:09:40,649 nipype.workflow INFO:
[Node] Running "WM_prior_mni_to_t1" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 0 --input /usr/share/fsl/5.0/data/standard/tissuepriors/2mm/avg152T1_white_bin.nii.gz --interpolation NearestNeighbor --output avg152T1_white_bin_trans.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz --transform [ /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat, 1 ]
201113-09:09:42,53 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.seg_preproc_0.WM.WM_prior_mni_to_t1".
201113-09:09:42,54 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.seg_preproc_0.CSF.CSF_collect_linear_transforms" in "/outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/CSF/CSF_collect_linear_transforms".
201113-09:09:42,61 nipype.workflow INFO:
[Node] Running "CSF_collect_linear_transforms" ("nipype.interfaces.utility.base.Merge")
201113-09:09:42,288 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.seg_preproc_0.CSF.CSF_collect_linear_transforms".
201113-09:09:42,290 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.seg_preproc_0.CSF.CSF_check_transforms" in "/outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/CSF/CSF_check_transforms".
201113-09:09:42,294 nipype.workflow INFO:
[Node] Running "CSF_check_transforms" ("nipype.interfaces.utility.wrappers.Function")
201113-09:09:42,519 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.seg_preproc_0.CSF.CSF_check_transforms".
201113-09:09:42,520 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.seg_preproc_0.CSF.CSF_inverse_transform_flags" in "/outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/CSF/CSF_inverse_transform_flags".
201113-09:09:42,524 nipype.workflow INFO:
[Node] Running "CSF_inverse_transform_flags" ("nipype.interfaces.utility.wrappers.Function")
201113-09:09:42,750 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.seg_preproc_0.CSF.CSF_inverse_transform_flags".
201113-09:09:42,751 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.seg_preproc_0.CSF.CSF_prior_mni_to_t1" in "/outputs/tmp/resting_preproc_sub-128_ses-1/seg_preproc_0/CSF/CSF_prior_mni_to_t1".
201113-09:09:42,760 nipype.workflow INFO:
[Node] Running "CSF_prior_mni_to_t1" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 0 --input /usr/share/fsl/5.0/data/standard/tissuepriors/2mm/avg152T1_csf_bin.nii.gz --interpolation NearestNeighbor --output avg152T1_csf_bin_trans.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-128_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-128_ses-1_T1w_resample_corrected_masked_xform.nii.gz --transform [ /outputs/tmp/resting_preproc_sub-128_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat, 1 ]
201113-09:09:44,138 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.seg_preproc_0.CSF.CSF_prior_mni_to_t1".
201113-09:09:44,140 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_ants_initial_xfm" in "/outputs/tmp/resting_preproc_sub-128_ses-1/sinker_0_ants_initial_xfm".
201113-09:09:44,147 nipype.workflow INFO:
[Node] Running "sinker_0_ants_initial_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:09:44,375 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_ants_initial_xfm".
201113-09:09:44,377 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.anat_template_edge_0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/anat_template_edge_0".
201113-09:09:44,413 nipype.workflow INFO:
[Node] Running "anat_template_edge_0" ("CPAC.utils.interfaces.function.Function")
201113-09:09:46,593 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.anat_template_edge_0".
201113-09:09:46,595 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mni_anat_0.resample_o" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mni_anat_0/resample_o".
201113-09:09:46,600 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-09:09:47,158 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mni_anat_0.resample_o".
201113-09:09:47,160 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mni_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mni_anat_0/montage_s".
201113-09:09:47,194 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mni_anat_0/montage_s/mapflow/_montage_s0".
201113-09:09:47,199 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-09:09:49,186 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-09:09:49,189 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mni_anat_0.montage_s".
201113-09:09:49,190 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mni_normalized_anatomical_s" in "/outputs/tmp/resting_preproc_sub-128_ses-1/sinker_0_qc___mni_normalized_anatomical_s".
201113-09:09:49,197 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mni_normalized_anatomical_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:09:49,410 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mni_normalized_anatomical_s/_montage_s0/mni_anat_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mni_normalized_anatomical_s/_montage_s0/mni_anat_s.png
201113-09:09:49,427 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mni_normalized_anatomical_s".
201113-09:09:49,428 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.montage_mni_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mni_anat_0/montage_a".
201113-09:09:49,435 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-128_ses-1/montage_mni_anat_0/montage_a/mapflow/_montage_a0".
201113-09:09:49,439 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-09:09:51,606 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-09:09:51,609 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.montage_mni_anat_0.montage_a".
201113-09:09:51,610 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.sinker_0_qc___mni_normalized_anatomical_a" in "/outputs/tmp/resting_preproc_sub-128_ses-1/sinker_0_qc___mni_normalized_anatomical_a".
201113-09:09:51,617 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mni_normalized_anatomical_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:09:51,830 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc___mni_normalized_anatomical_a/_montage_a0/mni_anat_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-1/qc/mni_normalized_anatomical_a/_montage_a0/mni_anat_a.png
201113-09:09:51,846 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.sinker_0_qc___mni_normalized_anatomical_a".
201113-09:09:51,848 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.check_for_s3_acpc_template_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-1/check_for_s3_acpc_template_brain".
201113-09:09:51,852 nipype.workflow INFO:
[Node] Running "check_for_s3_acpc_template_brain" ("CPAC.utils.interfaces.function.Function")
201113-09:09:52,81 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.check_for_s3_acpc_template_brain".
201113-09:09:52,82 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-1.check_for_s3_acpc_template_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-1/check_for_s3_acpc_template_skull".
201113-09:09:52,86 nipype.workflow INFO:
[Node] Running "check_for_s3_acpc_template_skull" ("CPAC.utils.interfaces.function.Function")
201113-09:09:52,362 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-1.check_for_s3_acpc_template_skull".
201113-09:10:19,456 nipype.workflow INFO:
End of subject workflow resting_preproc_sub-128_ses-1
CPAC run complete:
Pipeline configuration: cpac_fmriprep-options
Subject workflow: resting_preproc_sub-128_ses-1
Elapsed run time (minutes): 665.9193616628647
Timing information saved in /outputs/log/cpac_individual_timing_cpac_fmriprep-options.csv
System time of start: 2020-11-12 22:04:28
System time of completion: 2020-11-13 09:10:19
201113-09:10:19,469 nipype.workflow INFO:
C-PAC version: 1.7.2
Setting maximum number of cores per participant to 1
Setting number of participants at once to 1
Setting OMP_NUM_THREADS to 1
Setting MKL_NUM_THREADS to 1
Setting ANTS/ITK thread usage to 1
Maximum potential number of cores that might be used during this run: 1
201113-09:10:21,738 nipype.workflow INFO:
Pipeline building completed.
201113-09:10:21,739 nipype.workflow INFO:
Strategy forks:
- cpac_fmriprep-options
201113-09:10:24,483 nipype.workflow INFO:
Workflow resting_preproc_sub-128_ses-2 settings: ['check', 'execution', 'logging', 'monitoring']
201113-09:10:25,739 nipype.workflow INFO:
Running serially.
201113-09:10:25,748 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_vigilance_run-2/select_scan_params".
201113-09:10:25,781 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:10:26,17 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.select_scan_params".
201113-09:10:26,29 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_vigilance_run-2/s3_scan_params".
201113-09:10:26,36 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:10:26,266 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.s3_scan_params".
201113-09:10:26,270 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/scan_params_0".
201113-09:10:26,279 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-09:10:26,508 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.scan_params_0".
201113-09:10:26,511 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_vigilance_run-2/selectrest".
201113-09:10:26,545 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-09:10:26,779 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.selectrest".
201113-09:10:26,790 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_vigilance_run-2/check_for_s3".
201113-09:10:26,795 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-09:10:27,82 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.check_for_s3".
201113-09:10:27,83 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-128_ses-2/edit_func_0/_scan_vigilance_run-2/func_get_idx".
201113-09:10:27,91 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-09:10:27,325 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.edit_func_0.func_get_idx".
201113-09:10:27,326 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-128_ses-2/edit_func_0/_scan_vigilance_run-2/func_drop_trs".
201113-09:10:27,334 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-128/ses-2/func/sub-128_ses-2_task-vigilance_run-2_bold.nii.gz[0..68] -expr "a" -prefix sub-128_ses-2_task-vigilance_run-2_bold_calc.nii.gz
201113-09:10:27,592 nipype.interface INFO:
stderr 2020-11-13T09:10:27.592025:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:10:27,592 nipype.interface INFO:
stderr 2020-11-13T09:10:27.592457:++ Authored by: A cast of thousands
201113-09:10:30,753 nipype.interface INFO:
stderr 2020-11-13T09:10:30.753065:++ Output dataset ./sub-128_ses-2_task-vigilance_run-2_bold_calc.nii.gz
201113-09:10:30,942 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.edit_func_0.func_drop_trs".
201113-09:10:30,944 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique".
201113-09:10:30,970 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-128_ses-2_task-vigilance_run-2_bold_calc.nii.gz
201113-09:10:31,219 nipype.interface INFO:
stderr 2020-11-13T09:10:31.219214:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:10:31,219 nipype.interface INFO:
stderr 2020-11-13T09:10:31.219812:++ Authored by: RW Cox
201113-09:10:31,231 nipype.interface INFO:
stderr 2020-11-13T09:10:31.231769:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-128_ses-2_task-vigilance_run-2_bold_calc.nii.gz
201113-09:10:31,232 nipype.interface INFO:
stderr 2020-11-13T09:10:31.232780: + deoblique
201113-09:10:31,233 nipype.interface INFO:
stderr 2020-11-13T09:10:31.233090: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-128_ses-2_task-vigilance_run-2_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-128_ses-2_task-vigilance_run-2_bold_calc.nii.gz in NIFTI storage)
201113-09:10:33,254 nipype.interface INFO:
stderr 2020-11-13T09:10:33.254288:++ 3drefit processed 1 datasets
201113-09:10:33,466 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:10:33,467 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_reorient".
201113-09:10:33,474 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-2_task-vigilance_run-2_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_reorient/sub-128_ses-2_task-vigilance_run-2_bold_calc.nii.gz
201113-09:10:36,109 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:10:36,111 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_RPI".
201113-09:10:36,117 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_RPI/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample.nii.gz
201113-09:10:36,364 nipype.interface INFO:
stderr 2020-11-13T09:10:36.364440:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:10:36,364 nipype.interface INFO:
stderr 2020-11-13T09:10:36.364763:++ Authored by: KR Hammett & RW Cox
201113-09:10:36,631 nipype.interface INFO:
stderr 2020-11-13T09:10:36.631250:++ Output dataset ./sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_tstat.nii.gz
201113-09:10:36,815 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:10:36,817 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_generate_ref".
201113-09:10:36,824 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-2_task-vigilance_run-2_bold_calc_resample.1D -1Dmatrix_save sub-128_ses-2_task-vigilance_run-2_bold_calc_resample.aff12.1D -prefix sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_RPI/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_generate_ref/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample.nii.gz
201113-09:10:37,69 nipype.interface INFO:
stderr 2020-11-13T09:10:37.069284:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:10:37,69 nipype.interface INFO:
stderr 2020-11-13T09:10:37.069872:++ Authored by: RW Cox
201113-09:10:37,79 nipype.interface INFO:
stderr 2020-11-13T09:10:37.079866:++ Coarse del was 10, replaced with 3
201113-09:11:34,463 nipype.interface INFO:
stderr 2020-11-13T09:11:34.463550:++ Max displacement in automask = 0.46 (mm) at sub-brick 55
201113-09:11:34,464 nipype.interface INFO:
stderr 2020-11-13T09:11:34.464016:++ Max delta displ in automask = 0.53 (mm) at sub-brick 66
201113-09:11:36,564 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:11:36,566 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_motion".
201113-09:11:36,573 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_motion/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_volreg.nii.gz
201113-09:11:36,829 nipype.interface INFO:
stderr 2020-11-13T09:11:36.829214:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:11:36,829 nipype.interface INFO:
stderr 2020-11-13T09:11:36.829810:++ Authored by: KR Hammett & RW Cox
201113-09:11:37,105 nipype.interface INFO:
stderr 2020-11-13T09:11:37.105662:++ Output dataset ./sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_volreg_tstat.nii.gz
201113-09:11:37,292 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:11:37,293 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_motion_correct_mcflirt".
201113-09:11:37,301 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_reorient/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_motion_correct_mcflirt/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_motion/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:11:50,351 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:11:50,357 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/calculate_FDJ".
201113-09:11:50,363 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201113-09:11:50,590 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201113-09:11:50,591 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/sinker_0_frame_wise_displacement_jenkinson".
201113-09:11:50,599 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:11:50,828 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201113-09:11:50,830 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/sinker_0_max_displacement".
201113-09:11:50,838 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:11:51,69 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_max_displacement".
201113-09:11:51,71 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/sinker_0_coordinate_transformation".
201113-09:11:51,84 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:11:51,325 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_coordinate_transformation".
201113-09:11:51,332 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_mean_skull".
201113-09:11:51,339 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_mean_skull/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf.nii.gz
201113-09:11:51,594 nipype.interface INFO:
stderr 2020-11-13T09:11:51.594528:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:11:51,594 nipype.interface INFO:
stderr 2020-11-13T09:11:51.594972:++ Authored by: KR Hammett & RW Cox
201113-09:11:51,886 nipype.interface INFO:
stderr 2020-11-13T09:11:51.886695:++ Output dataset ./sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat.nii.gz
201113-09:11:52,82 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:11:52,84 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass".
201113-09:11:52,90 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_mean_skull/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:11:53,920 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:11:53,921 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_dilate".
201113-09:11:53,928 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_dilate/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:11:54,630 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:11:54,632 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_mask".
201113-09:11:54,638 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_dilate/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_mask/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:11:55,89 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:11:55,91 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/unifize".
201113-09:11:55,97 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/unifize/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:11:55,344 nipype.interface INFO:
stderr 2020-11-13T09:11:55.344022:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:13:09,157 nipype.interface INFO:
stderr 2020-11-13T09:13:09.157870: + Pre-processing: IAV..UW[s3880]Im
201113-09:13:09,171 nipype.interface INFO:
stderr 2020-11-13T09:13:09.171719:++ Output dataset ./uni.nii.gz
201113-09:13:09,172 nipype.interface INFO:
stderr 2020-11-13T09:13:09.172006:++ ===== Elapsed = 73.8 sec
201113-09:13:09,388 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:13:09,390 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass".
201113-09:13:09,395 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass/uni.nii.gz
201113-09:13:09,649 nipype.interface INFO:
stderr 2020-11-13T09:13:09.649620:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:13:09,649 nipype.interface INFO:
stderr 2020-11-13T09:13:09.649962:++ Authored by: Emperor Zhark
201113-09:13:09,652 nipype.interface INFO:
stderr 2020-11-13T09:13:09.652336:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass/uni.nii.gz
201113-09:13:09,657 nipype.interface INFO:
stderr 2020-11-13T09:13:09.657781:++ Forming automask
201113-09:13:09,659 nipype.interface INFO:
stderr 2020-11-13T09:13:09.659187: + Fixed clip level = 404.538239
201113-09:13:09,662 nipype.interface INFO:
stderr 2020-11-13T09:13:09.662474: + Used gradual clip level = 368.271454 .. 478.853424
201113-09:13:09,662 nipype.interface INFO:
stderr 2020-11-13T09:13:09.662685: + Number voxels above clip level = 29862
201113-09:13:09,662 nipype.interface INFO:
stderr 2020-11-13T09:13:09.662845: + Clustering voxels ...
201113-09:13:09,663 nipype.interface INFO:
stderr 2020-11-13T09:13:09.663944: + Largest cluster has 29855 voxels
201113-09:13:09,665 nipype.interface INFO:
stderr 2020-11-13T09:13:09.665273: + Clustering voxels ...
201113-09:13:09,666 nipype.interface INFO:
stderr 2020-11-13T09:13:09.666370: + Largest cluster has 29401 voxels
201113-09:13:09,669 nipype.interface INFO:
stderr 2020-11-13T09:13:09.669741: + Filled 651 voxels in small holes; now have 30052 voxels
201113-09:13:09,671 nipype.interface INFO:
stderr 2020-11-13T09:13:09.671969: + Filled 1 voxels in large holes; now have 30053 voxels
201113-09:13:09,673 nipype.interface INFO:
stderr 2020-11-13T09:13:09.673211: + Clustering voxels ...
201113-09:13:09,674 nipype.interface INFO:
stderr 2020-11-13T09:13:09.674289: + Largest cluster has 30053 voxels
201113-09:13:09,674 nipype.interface INFO:
stderr 2020-11-13T09:13:09.674528: + Clustering non-brain voxels ...
201113-09:13:09,674 nipype.interface INFO:
stderr 2020-11-13T09:13:09.674675: + Clustering voxels ...
201113-09:13:09,677 nipype.interface INFO:
stderr 2020-11-13T09:13:09.677557: + Largest cluster has 109173 voxels
201113-09:13:09,677 nipype.interface INFO:
stderr 2020-11-13T09:13:09.677890: + Mask now has 30091 voxels
201113-09:13:09,678 nipype.interface INFO:
stderr 2020-11-13T09:13:09.678047:++ Dilating automask
201113-09:13:09,684 nipype.interface INFO:
stderr 2020-11-13T09:13:09.684473: + Clustering voxels ...
201113-09:13:09,686 nipype.interface INFO:
stderr 2020-11-13T09:13:09.686887: + Largest cluster has 103140 voxels
201113-09:13:09,687 nipype.interface INFO:
stderr 2020-11-13T09:13:09.687222:++ 36124 voxels in the mask [out of 139264: 25.94%]
201113-09:13:09,687 nipype.interface INFO:
stderr 2020-11-13T09:13:09.687403:++ first 9 x-planes are zero [from R]
201113-09:13:09,687 nipype.interface INFO:
stderr 2020-11-13T09:13:09.687780:++ last 9 x-planes are zero [from L]
201113-09:13:09,687 nipype.interface INFO:
stderr 2020-11-13T09:13:09.687959:++ first 5 y-planes are zero [from P]
201113-09:13:09,688 nipype.interface INFO:
stderr 2020-11-13T09:13:09.688104:++ last 4 y-planes are zero [from A]
201113-09:13:09,688 nipype.interface INFO:
stderr 2020-11-13T09:13:09.688244:++ first 0 z-planes are zero [from I]
201113-09:13:09,688 nipype.interface INFO:
stderr 2020-11-13T09:13:09.688396:++ last 3 z-planes are zero [from S]
201113-09:13:09,692 nipype.interface INFO:
stderr 2020-11-13T09:13:09.692259:++ Output dataset ./uni_mask.nii.gz
201113-09:13:09,692 nipype.interface INFO:
stderr 2020-11-13T09:13:09.692441:++ applying mask to original data
201113-09:13:09,693 nipype.interface INFO:
stderr 2020-11-13T09:13:09.693112:++ Writing masked data
201113-09:13:09,706 nipype.interface INFO:
stderr 2020-11-13T09:13:09.706180:++ Output dataset ./uni_masked.nii.gz
201113-09:13:09,706 nipype.interface INFO:
stderr 2020-11-13T09:13:09.706513:++ CPU time = 0.000000 sec
201113-09:13:09,885 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:13:09,886 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/combine_masks".
201113-09:13:09,892 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/combine_masks/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:13:10,322 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:13:10,323 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/cal_DVARS".
201113-09:13:10,329 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201113-09:13:10,784 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201113-09:13:10,785 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_extract_brain".
201113-09:13:10,792 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_motion_correct_mcflirt/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/combine_masks/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-09:13:11,36 nipype.interface INFO:
stderr 2020-11-13T09:13:11.036119:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:13:11,36 nipype.interface INFO:
stderr 2020-11-13T09:13:11.036677:++ Authored by: A cast of thousands
201113-09:13:12,510 nipype.interface INFO:
stderr 2020-11-13T09:13:12.510487:++ Output dataset ./sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-09:13:12,696 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:13:12,697 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_normalize".
201113-09:13:12,703 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_extract_brain/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_normalize/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201113-09:13:14,58 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:13:14,60 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mask_normalize".
201113-09:13:14,65 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_normalize/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mask_normalize/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:13:14,826 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:13:14,828 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mean".
201113-09:13:14,834 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mean/sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-09:13:15,84 nipype.interface INFO:
stderr 2020-11-13T09:13:15.084828:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:13:15,85 nipype.interface INFO:
stderr 2020-11-13T09:13:15.085172:++ Authored by: KR Hammett & RW Cox
201113-09:13:15,257 nipype.interface INFO:
stderr 2020-11-13T09:13:15.256973:++ Output dataset ./sub-128_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz
201113-09:13:15,442 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:13:15,443 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/norm_motion_params".
201113-09:13:15,449 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:13:15,681 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:13:15,682 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-2/qc_motion_0/_scan_vigilance_run-2/motion_plot".
201113-09:13:15,689 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201113-09:13:16,127 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.qc_motion_0.motion_plot".
201113-09:13:16,129 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/sinker_0_qc___movement_trans_plot".
201113-09:13:16,137 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:13:16,352 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc___movement_trans_plot/_scan_vigilance_run-2/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc/movement_trans_plot/_scan_vigilance_run-2/motion_trans_plot.png
201113-09:13:16,367 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_trans_plot".
201113-09:13:16,369 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/sinker_0_qc___movement_rot_plot".
201113-09:13:16,376 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:13:16,589 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc___movement_rot_plot/_scan_vigilance_run-2/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc/movement_rot_plot/_scan_vigilance_run-2/motion_rot_plot.png
201113-09:13:16,607 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_rot_plot".
201113-09:13:16,609 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/calc_motion_parameters".
201113-09:13:16,616 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:13:16,851 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201113-09:13:16,853 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/sinker_0_motion_params".
201113-09:13:16,861 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:13:17,93 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_motion_params".
201113-09:13:17,94 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/calculate_FD".
201113-09:13:17,99 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201113-09:13:17,332 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201113-09:13:17,334 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/sinker_0_frame_wise_displacement_power".
201113-09:13:17,341 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:13:17,572 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_power".
201113-09:13:17,574 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/calc_power_parameters".
201113-09:13:17,580 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:13:17,811 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201113-09:13:17,813 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/sinker_0_power_params".
201113-09:13:17,821 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:13:18,52 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_power_params".
201113-09:13:18,54 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/sinker_0_movement_parameters".
201113-09:13:18,62 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:13:18,292 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_movement_parameters".
201113-09:13:18,293 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/func_despiked_0".
201113-09:13:18,300 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-128_ses-2_task-vigilance_run-2_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/func_despiked_0/sub-128_ses-2_task-vigilance_run-2_bold_calc.nii.gz
201113-09:13:18,554 nipype.interface INFO:
stderr 2020-11-13T09:13:18.554295:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:13:18,554 nipype.interface INFO:
stderr 2020-11-13T09:13:18.554687:++ Authored by: RW Cox
201113-09:13:18,556 nipype.interface INFO:
stderr 2020-11-13T09:13:18.556755:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:13:18,556 nipype.interface INFO:
stderr 2020-11-13T09:13:18.556755: such as /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/func_despiked_0/sub-128_ses-2_task-vigilance_run-2_bold_calc.nii.gz,
201113-09:13:18,557 nipype.interface INFO:
stderr 2020-11-13T09:13:18.556755: or viewing/combining it with volumes of differing obliquity,
201113-09:13:18,557 nipype.interface INFO:
stderr 2020-11-13T09:13:18.556755: you should consider running:
201113-09:13:18,557 nipype.interface INFO:
stderr 2020-11-13T09:13:18.556755: 3dWarp -deoblique
201113-09:13:18,557 nipype.interface INFO:
stderr 2020-11-13T09:13:18.556755: on this and other oblique datasets in the same session.
201113-09:13:18,557 nipype.interface INFO:
stderr 2020-11-13T09:13:18.556755: See 3dWarp -help for details.
201113-09:13:18,557 nipype.interface INFO:
stderr 2020-11-13T09:13:18.557643:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/func_despiked_0/sub-128_ses-2_task-vigilance_run-2_bold_calc.nii.gz is 19.900011 degrees from plumb.
201113-09:13:18,557 nipype.interface INFO:
stderr 2020-11-13T09:13:18.557830:++ Input dataset is in short format, but output will be in float format
201113-09:13:18,558 nipype.interface INFO:
stderr 2020-11-13T09:13:18.558000:++ ignoring first 0 time points, using last 69
201113-09:13:18,558 nipype.interface INFO:
stderr 2020-11-13T09:13:18.558170:++ using 69 time points => -corder 2
201113-09:13:18,558 nipype.interface INFO:
stderr 2020-11-13T09:13:18.558334:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/func_despiked_0/sub-128_ses-2_task-vigilance_run-2_bold_calc.nii.gz
201113-09:13:18,806 nipype.interface INFO:
stderr 2020-11-13T09:13:18.806389:++ 33540 voxels in the automask [out of 139264 in dataset]
201113-09:13:18,812 nipype.interface INFO:
stderr 2020-11-13T09:13:18.812127:++ 57495 voxels in the dilated automask [out of 139264 in dataset]
201113-09:13:18,818 nipype.interface INFO:
stderr 2020-11-13T09:13:18.818077:++ Procesing time series with OLD model fit algorithm
201113-09:13:18,818 nipype.interface INFO:
stderr 2020-11-13T09:13:18.818258:++ smash edit thresholds: 3.1 .. 5.0 MADs
201113-09:13:18,818 nipype.interface INFO:
stderr 2020-11-13T09:13:18.818426: + [ 3.457% .. 0.072% of normal distribution]
201113-09:13:18,818 nipype.interface INFO:
stderr 2020-11-13T09:13:18.818580: + [ 8.839% .. 3.125% of Laplace distribution]
201113-09:13:18,818 nipype.interface INFO:
stderr 2020-11-13T09:13:18.818735:++ start OpenMP thread #0
201113-09:13:20,503 nipype.interface INFO:
stderr 2020-11-13T09:13:20.503537:............................
201113-09:13:20,503 nipype.interface INFO:
stderr 2020-11-13T09:13:20.503872:++ Elapsed despike time = 1s 685ms
201113-09:13:20,504 nipype.interface INFO:
stderr 2020-11-13T09:13:20.504021:
201113-09:13:20,504 nipype.interface INFO:
stderr 2020-11-13T09:13:20.504542:++ FINAL: 3967155 data points, 303866 edits [7.660%], 53802 big edits [1.356%]
201113-09:13:22,628 nipype.interface INFO:
stderr 2020-11-13T09:13:22.628611:++ Output dataset ./sub-128_ses-2_task-vigilance_run-2_bold_calc_despike.nii.gz
201113-09:13:22,825 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_despiked_0".
201113-09:13:22,826 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-2/slice_timing".
201113-09:13:22,834 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:13:22,834 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-2/slice_timing/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike.nii.gz
201113-09:13:23,48 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:13:23,84 nipype.interface INFO:
stderr 2020-11-13T09:13:23.084370:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:13:23,86 nipype.interface INFO:
stderr 2020-11-13T09:13:23.086823:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:13:23,86 nipype.interface INFO:
stderr 2020-11-13T09:13:23.086823: such as /outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-2/slice_timing/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike.nii.gz,
201113-09:13:23,87 nipype.interface INFO:
stderr 2020-11-13T09:13:23.086823: or viewing/combining it with volumes of differing obliquity,
201113-09:13:23,87 nipype.interface INFO:
stderr 2020-11-13T09:13:23.086823: you should consider running:
201113-09:13:23,87 nipype.interface INFO:
stderr 2020-11-13T09:13:23.086823: 3dWarp -deoblique
201113-09:13:23,87 nipype.interface INFO:
stderr 2020-11-13T09:13:23.086823: on this and other oblique datasets in the same session.
201113-09:13:23,87 nipype.interface INFO:
stderr 2020-11-13T09:13:23.086823: See 3dWarp -help for details.
201113-09:13:23,87 nipype.interface INFO:
stderr 2020-11-13T09:13:23.087576:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-2/slice_timing/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike.nii.gz is 19.900011 degrees from plumb.
201113-09:13:25,853 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_slice_timing_correction_0.slice_timing".
201113-09:13:25,854 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique".
201113-09:13:25,886 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift.nii.gz
201113-09:13:26,137 nipype.interface INFO:
stderr 2020-11-13T09:13:26.137110:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:13:26,137 nipype.interface INFO:
stderr 2020-11-13T09:13:26.137488:++ Authored by: RW Cox
201113-09:13:26,139 nipype.interface INFO:
stderr 2020-11-13T09:13:26.139628:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift.nii.gz
201113-09:13:26,140 nipype.interface INFO:
stderr 2020-11-13T09:13:26.140235: + deoblique
201113-09:13:26,140 nipype.interface INFO:
stderr 2020-11-13T09:13:26.140430: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201113-09:13:27,274 nipype.interface INFO:
stderr 2020-11-13T09:13:27.274243:++ 3drefit processed 1 datasets
201113-09:13:27,457 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:13:27,459 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_reorient".
201113-09:13:27,464 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_reorient/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift.nii.gz
201113-09:13:29,199 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:13:29,201 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_RPI".
201113-09:13:29,209 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_RPI/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample.nii.gz
201113-09:13:29,454 nipype.interface INFO:
stderr 2020-11-13T09:13:29.454806:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:13:29,455 nipype.interface INFO:
stderr 2020-11-13T09:13:29.455125:++ Authored by: KR Hammett & RW Cox
201113-09:13:29,782 nipype.interface INFO:
stderr 2020-11-13T09:13:29.782733:++ Output dataset ./sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz
201113-09:13:29,965 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:13:29,966 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_generate_ref".
201113-09:13:29,973 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_RPI/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_generate_ref/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample.nii.gz
201113-09:13:30,218 nipype.interface INFO:
stderr 2020-11-13T09:13:30.218197:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:13:30,218 nipype.interface INFO:
stderr 2020-11-13T09:13:30.218736:++ Authored by: RW Cox
201113-09:13:30,225 nipype.interface INFO:
stderr 2020-11-13T09:13:30.225731:++ Coarse del was 10, replaced with 3
201113-09:14:27,394 nipype.interface INFO:
stderr 2020-11-13T09:14:27.394664:++ Max displacement in automask = 0.37 (mm) at sub-brick 67
201113-09:14:27,395 nipype.interface INFO:
stderr 2020-11-13T09:14:27.395277:++ Max delta displ in automask = 0.40 (mm) at sub-brick 56
201113-09:14:30,44 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:14:30,45 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_motion".
201113-09:14:30,52 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_motion/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz
201113-09:14:30,305 nipype.interface INFO:
stderr 2020-11-13T09:14:30.305473:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:14:30,305 nipype.interface INFO:
stderr 2020-11-13T09:14:30.305922:++ Authored by: KR Hammett & RW Cox
201113-09:14:30,744 nipype.interface INFO:
stderr 2020-11-13T09:14:30.744449:++ Output dataset ./sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201113-09:14:30,928 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:14:30,929 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_motion_correct_mcflirt".
201113-09:14:30,936 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_reorient/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_motion_correct_mcflirt/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_motion/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:14:43,135 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:14:43,141 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/sinker_0_motion_correct".
201113-09:14:43,151 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:14:43,378 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_motion_correct".
201113-09:14:43,380 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_mean_skull".
201113-09:14:43,388 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_mean_skull/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz
201113-09:14:43,644 nipype.interface INFO:
stderr 2020-11-13T09:14:43.643970:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:14:43,644 nipype.interface INFO:
stderr 2020-11-13T09:14:43.644390:++ Authored by: KR Hammett & RW Cox
201113-09:14:43,996 nipype.interface INFO:
stderr 2020-11-13T09:14:43.996025:++ Output dataset ./sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201113-09:14:44,183 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:14:44,184 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass".
201113-09:14:44,190 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_mean_skull/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:14:46,41 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:14:46,43 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_dilate".
201113-09:14:46,48 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_dilate/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:14:46,713 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:14:46,714 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_mask".
201113-09:14:46,720 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_dilate/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_mask/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:14:47,171 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:14:47,172 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/unifize".
201113-09:14:47,179 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/unifize/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:14:47,427 nipype.interface INFO:
stderr 2020-11-13T09:14:47.427097:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:16:01,117 nipype.interface INFO:
stderr 2020-11-13T09:16:01.117153: + Pre-processing: IAV..UW[s3861]Im
201113-09:16:01,134 nipype.interface INFO:
stderr 2020-11-13T09:16:01.134065:++ Output dataset ./uni.nii.gz
201113-09:16:01,134 nipype.interface INFO:
stderr 2020-11-13T09:16:01.134368:++ ===== Elapsed = 73.7 sec
201113-09:16:01,341 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:16:01,343 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass".
201113-09:16:01,349 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass/uni.nii.gz
201113-09:16:01,605 nipype.interface INFO:
stderr 2020-11-13T09:16:01.605081:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:16:01,605 nipype.interface INFO:
stderr 2020-11-13T09:16:01.605622:++ Authored by: Emperor Zhark
201113-09:16:01,608 nipype.interface INFO:
stderr 2020-11-13T09:16:01.608421:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass/uni.nii.gz
201113-09:16:01,612 nipype.interface INFO:
stderr 2020-11-13T09:16:01.612906:++ Forming automask
201113-09:16:01,614 nipype.interface INFO:
stderr 2020-11-13T09:16:01.614714: + Fixed clip level = 404.231812
201113-09:16:01,618 nipype.interface INFO:
stderr 2020-11-13T09:16:01.618971: + Used gradual clip level = 367.982788 .. 478.545715
201113-09:16:01,619 nipype.interface INFO:
stderr 2020-11-13T09:16:01.619178: + Number voxels above clip level = 29850
201113-09:16:01,619 nipype.interface INFO:
stderr 2020-11-13T09:16:01.619335: + Clustering voxels ...
201113-09:16:01,620 nipype.interface INFO:
stderr 2020-11-13T09:16:01.620436: + Largest cluster has 29842 voxels
201113-09:16:01,621 nipype.interface INFO:
stderr 2020-11-13T09:16:01.621773: + Clustering voxels ...
201113-09:16:01,622 nipype.interface INFO:
stderr 2020-11-13T09:16:01.622870: + Largest cluster has 29379 voxels
201113-09:16:01,626 nipype.interface INFO:
stderr 2020-11-13T09:16:01.626232: + Filled 654 voxels in small holes; now have 30033 voxels
201113-09:16:01,628 nipype.interface INFO:
stderr 2020-11-13T09:16:01.628447: + Filled 1 voxels in large holes; now have 30034 voxels
201113-09:16:01,629 nipype.interface INFO:
stderr 2020-11-13T09:16:01.629686: + Clustering voxels ...
201113-09:16:01,630 nipype.interface INFO:
stderr 2020-11-13T09:16:01.630780: + Largest cluster has 30034 voxels
201113-09:16:01,631 nipype.interface INFO:
stderr 2020-11-13T09:16:01.631010: + Clustering non-brain voxels ...
201113-09:16:01,631 nipype.interface INFO:
stderr 2020-11-13T09:16:01.631154: + Clustering voxels ...
201113-09:16:01,634 nipype.interface INFO:
stderr 2020-11-13T09:16:01.634000: + Largest cluster has 109192 voxels
201113-09:16:01,634 nipype.interface INFO:
stderr 2020-11-13T09:16:01.634329: + Mask now has 30072 voxels
201113-09:16:01,634 nipype.interface INFO:
stderr 2020-11-13T09:16:01.634490:++ Dilating automask
201113-09:16:01,640 nipype.interface INFO:
stderr 2020-11-13T09:16:01.640746: + Clustering voxels ...
201113-09:16:01,643 nipype.interface INFO:
stderr 2020-11-13T09:16:01.643158: + Largest cluster has 103147 voxels
201113-09:16:01,643 nipype.interface INFO:
stderr 2020-11-13T09:16:01.643495:++ 36117 voxels in the mask [out of 139264: 25.93%]
201113-09:16:01,643 nipype.interface INFO:
stderr 2020-11-13T09:16:01.643665:++ first 9 x-planes are zero [from R]
201113-09:16:01,643 nipype.interface INFO:
stderr 2020-11-13T09:16:01.643828:++ last 9 x-planes are zero [from L]
201113-09:16:01,643 nipype.interface INFO:
stderr 2020-11-13T09:16:01.643972:++ first 5 y-planes are zero [from P]
201113-09:16:01,644 nipype.interface INFO:
stderr 2020-11-13T09:16:01.644115:++ last 4 y-planes are zero [from A]
201113-09:16:01,644 nipype.interface INFO:
stderr 2020-11-13T09:16:01.644249:++ first 0 z-planes are zero [from I]
201113-09:16:01,644 nipype.interface INFO:
stderr 2020-11-13T09:16:01.644395:++ last 3 z-planes are zero [from S]
201113-09:16:01,648 nipype.interface INFO:
stderr 2020-11-13T09:16:01.648874:++ Output dataset ./uni_mask.nii.gz
201113-09:16:01,649 nipype.interface INFO:
stderr 2020-11-13T09:16:01.649092:++ applying mask to original data
201113-09:16:01,649 nipype.interface INFO:
stderr 2020-11-13T09:16:01.649961:++ Writing masked data
201113-09:16:01,663 nipype.interface INFO:
stderr 2020-11-13T09:16:01.663802:++ Output dataset ./uni_masked.nii.gz
201113-09:16:01,664 nipype.interface INFO:
stderr 2020-11-13T09:16:01.664115:++ CPU time = 0.000000 sec
201113-09:16:01,847 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:16:01,849 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/combine_masks".
201113-09:16:01,855 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/combine_masks/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:16:02,295 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:16:02,297 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201113-09:16:02,303 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-09:16:02,534 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201113-09:16:02,535 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201113-09:16:02,541 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:16:02,799 nipype.interface INFO:
stderr 2020-11-13T09:16:02.799161:++ no -frac option: defaulting to -union
201113-09:16:02,799 nipype.interface INFO:
stderr 2020-11-13T09:16:02.799539:++ processing 1 input dataset(s), NN=2...
201113-09:16:02,799 nipype.interface INFO:
stderr 2020-11-13T09:16:02.799694:++ padding all datasets by 0 (for dilations)
201113-09:16:02,804 nipype.interface INFO:
stderr 2020-11-13T09:16:02.804610:++ frac 0 over 1 volumes gives min count 0
201113-09:16:02,805 nipype.interface INFO:
stderr 2020-11-13T09:16:02.805005:++ voxel limits: 0 clipped, 36017 survived, 103247 were zero
201113-09:16:02,805 nipype.interface INFO:
stderr 2020-11-13T09:16:02.805171:++ writing result sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201113-09:16:02,809 nipype.interface INFO:
stderr 2020-11-13T09:16:02.809650:++ Output dataset ./sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201113-09:16:02,994 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201113-09:16:02,995 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/sinker_0_functional_brain_mask".
201113-09:16:03,2 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:16:03,231 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_functional_brain_mask".
201113-09:16:03,233 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/functional_brain_mask_derivative_0".
201113-09:16:03,237 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201113-09:16:03,450 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201113-09:16:03,455 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:16:03,972 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201113-09:16:03,986 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.functional_brain_mask_derivative_0".
201113-09:16:03,988 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_extract_brain".
201113-09:16:03,996 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_motion_correct_mcflirt/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/combine_masks/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:16:04,245 nipype.interface INFO:
stderr 2020-11-13T09:16:04.245561:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:16:04,245 nipype.interface INFO:
stderr 2020-11-13T09:16:04.245921:++ Authored by: A cast of thousands
201113-09:16:05,882 nipype.interface INFO:
stderr 2020-11-13T09:16:05.881881:++ Output dataset ./sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:16:06,95 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:16:06,96 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_normalize".
201113-09:16:06,101 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_extract_brain/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_normalize/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201113-09:16:07,536 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:16:07,538 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201113-09:16:07,544 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_normalize/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:16:08,224 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201113-09:16:08,225 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201113-09:16:08,231 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:16:08,477 nipype.interface INFO:
stderr 2020-11-13T09:16:08.477908:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:16:08,478 nipype.interface INFO:
stderr 2020-11-13T09:16:08.478249:++ Authored by: KR Hammett & RW Cox
201113-09:16:08,788 nipype.interface INFO:
stderr 2020-11-13T09:16:08.788261:++ Output dataset ./sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:16:08,973 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.functional_mean".
201113-09:16:08,974 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-128_ses-2/qc_snr_0/_scan_vigilance_run-2/std_dev".
201113-09:16:08,980 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/combine_masks/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/qc_snr_0/_scan_vigilance_run-2/std_dev/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:16:09,226 nipype.interface INFO:
stderr 2020-11-13T09:16:09.226880:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:16:09,227 nipype.interface INFO:
stderr 2020-11-13T09:16:09.227214:++ Authored by: KR Hammett & RW Cox
201113-09:16:09,512 nipype.interface INFO:
stderr 2020-11-13T09:16:09.512830:++ Output dataset ./sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:16:09,699 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.qc_snr_0.std_dev".
201113-09:16:09,700 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/sinker_0_functional_preprocessed".
201113-09:16:09,707 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:16:09,936 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed".
201113-09:16:09,938 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mask_normalize".
201113-09:16:09,944 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_normalize/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mask_normalize/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:16:10,718 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:16:10,720 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/sinker_0_functional_preprocessed_mask".
201113-09:16:10,727 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:16:10,960 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed_mask".
201113-09:16:10,962 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mean".
201113-09:16:10,967 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mean/sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:16:11,218 nipype.interface INFO:
stderr 2020-11-13T09:16:11.218156:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:16:11,218 nipype.interface INFO:
stderr 2020-11-13T09:16:11.218521:++ Authored by: KR Hammett & RW Cox
201113-09:16:11,517 nipype.interface INFO:
stderr 2020-11-13T09:16:11.516986:++ Output dataset ./sub-128_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201113-09:16:11,698 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:16:11,700 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/sinker_0_mean_functional".
201113-09:16:11,707 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:16:11,936 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_mean_functional".
201113-09:16:11,938 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/norm_motion_params".
201113-09:16:11,943 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:16:12,173 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:16:12,174 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/sinker_0_slice_time_corrected".
201113-09:16:12,182 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:16:12,413 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_slice_time_corrected".
201113-09:16:12,414 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-2/sinker_0_raw_functional".
201113-09:16:12,421 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:16:12,731 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_raw_functional".
201113-09:16:12,732 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_vigilance_run-2/check_func_scan".
201113-09:16:12,768 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201113-09:16:13,3 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.check_func_scan".
201113-09:16:13,15 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_vigilance_run-1/select_scan_params".
201113-09:16:13,46 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:16:13,282 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.select_scan_params".
201113-09:16:13,293 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_vigilance_run-1/s3_scan_params".
201113-09:16:13,303 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:16:13,532 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.s3_scan_params".
201113-09:16:13,536 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/scan_params_0".
201113-09:16:13,545 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-09:16:13,778 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.scan_params_0".
201113-09:16:13,780 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_vigilance_run-1/selectrest".
201113-09:16:13,817 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-09:16:14,54 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.selectrest".
201113-09:16:14,65 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_vigilance_run-1/check_for_s3".
201113-09:16:14,71 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-09:16:14,359 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.check_for_s3".
201113-09:16:14,361 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-128_ses-2/edit_func_0/_scan_vigilance_run-1/func_get_idx".
201113-09:16:14,366 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-09:16:14,599 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.edit_func_0.func_get_idx".
201113-09:16:14,600 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-128_ses-2/edit_func_0/_scan_vigilance_run-1/func_drop_trs".
201113-09:16:14,606 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-128/ses-2/func/sub-128_ses-2_task-vigilance_run-1_bold.nii.gz[0..68] -expr "a" -prefix sub-128_ses-2_task-vigilance_run-1_bold_calc.nii.gz
201113-09:16:14,860 nipype.interface INFO:
stderr 2020-11-13T09:16:14.860396:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:16:14,860 nipype.interface INFO:
stderr 2020-11-13T09:16:14.860792:++ Authored by: A cast of thousands
201113-09:16:17,915 nipype.interface INFO:
stderr 2020-11-13T09:16:17.915281:++ Output dataset ./sub-128_ses-2_task-vigilance_run-1_bold_calc.nii.gz
201113-09:16:18,135 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.edit_func_0.func_drop_trs".
201113-09:16:18,136 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique".
201113-09:16:18,164 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-128_ses-2_task-vigilance_run-1_bold_calc.nii.gz
201113-09:16:18,417 nipype.interface INFO:
stderr 2020-11-13T09:16:18.417781:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:16:18,418 nipype.interface INFO:
stderr 2020-11-13T09:16:18.418152:++ Authored by: RW Cox
201113-09:16:18,420 nipype.interface INFO:
stderr 2020-11-13T09:16:18.420662:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-128_ses-2_task-vigilance_run-1_bold_calc.nii.gz
201113-09:16:18,421 nipype.interface INFO:
stderr 2020-11-13T09:16:18.421269: + deoblique
201113-09:16:18,421 nipype.interface INFO:
stderr 2020-11-13T09:16:18.421463: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-128_ses-2_task-vigilance_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-128_ses-2_task-vigilance_run-1_bold_calc.nii.gz in NIFTI storage)
201113-09:16:20,430 nipype.interface INFO:
stderr 2020-11-13T09:16:20.430289:++ 3drefit processed 1 datasets
201113-09:16:20,608 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:16:20,610 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_reorient".
201113-09:16:20,619 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-2_task-vigilance_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_reorient/sub-128_ses-2_task-vigilance_run-1_bold_calc.nii.gz
201113-09:16:23,223 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:16:23,225 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_RPI".
201113-09:16:23,230 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_RPI/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample.nii.gz
201113-09:16:23,476 nipype.interface INFO:
stderr 2020-11-13T09:16:23.476034:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:16:23,476 nipype.interface INFO:
stderr 2020-11-13T09:16:23.476364:++ Authored by: KR Hammett & RW Cox
201113-09:16:23,742 nipype.interface INFO:
stderr 2020-11-13T09:16:23.742685:++ Output dataset ./sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_tstat.nii.gz
201113-09:16:23,922 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:16:23,923 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_generate_ref".
201113-09:16:23,930 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-2_task-vigilance_run-1_bold_calc_resample.1D -1Dmatrix_save sub-128_ses-2_task-vigilance_run-1_bold_calc_resample.aff12.1D -prefix sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_RPI/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_generate_ref/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample.nii.gz
201113-09:16:24,185 nipype.interface INFO:
stderr 2020-11-13T09:16:24.185854:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:16:24,186 nipype.interface INFO:
stderr 2020-11-13T09:16:24.186232:++ Authored by: RW Cox
201113-09:16:24,200 nipype.interface INFO:
stderr 2020-11-13T09:16:24.200021:++ Coarse del was 10, replaced with 3
201113-09:17:21,446 nipype.interface INFO:
stderr 2020-11-13T09:17:21.446358:++ Max displacement in automask = 1.15 (mm) at sub-brick 63
201113-09:17:21,446 nipype.interface INFO:
stderr 2020-11-13T09:17:21.446858:++ Max delta displ in automask = 1.59 (mm) at sub-brick 64
201113-09:17:23,600 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:17:23,602 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_motion".
201113-09:17:23,609 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_motion/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_volreg.nii.gz
201113-09:17:23,862 nipype.interface INFO:
stderr 2020-11-13T09:17:23.862228:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:17:23,862 nipype.interface INFO:
stderr 2020-11-13T09:17:23.862831:++ Authored by: KR Hammett & RW Cox
201113-09:17:24,136 nipype.interface INFO:
stderr 2020-11-13T09:17:24.136639:++ Output dataset ./sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_volreg_tstat.nii.gz
201113-09:17:24,319 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:17:24,320 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_motion_correct_mcflirt".
201113-09:17:24,327 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_reorient/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_motion_correct_mcflirt/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_motion/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:17:37,3 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:17:37,9 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/calculate_FDJ".
201113-09:17:37,14 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201113-09:17:37,244 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201113-09:17:37,245 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/sinker_0_frame_wise_displacement_jenkinson".
201113-09:17:37,252 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:17:37,480 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201113-09:17:37,481 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/sinker_0_max_displacement".
201113-09:17:37,489 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:17:37,719 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_max_displacement".
201113-09:17:37,721 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/sinker_0_coordinate_transformation".
201113-09:17:37,734 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:17:37,983 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_coordinate_transformation".
201113-09:17:37,988 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_mean_skull".
201113-09:17:37,995 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_mean_skull/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf.nii.gz
201113-09:17:38,250 nipype.interface INFO:
stderr 2020-11-13T09:17:38.250115:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:17:38,250 nipype.interface INFO:
stderr 2020-11-13T09:17:38.250534:++ Authored by: KR Hammett & RW Cox
201113-09:17:38,538 nipype.interface INFO:
stderr 2020-11-13T09:17:38.538008:++ Output dataset ./sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat.nii.gz
201113-09:17:38,719 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:17:38,721 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass".
201113-09:17:38,726 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_mean_skull/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:17:40,582 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:17:40,583 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_dilate".
201113-09:17:40,589 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_dilate/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:17:41,283 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:17:41,285 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_mask".
201113-09:17:41,291 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_dilate/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_mask/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:17:41,742 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:17:41,743 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/unifize".
201113-09:17:41,749 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/unifize/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:17:42,9 nipype.interface INFO:
stderr 2020-11-13T09:17:42.009096:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:18:55,968 nipype.interface INFO:
stderr 2020-11-13T09:18:55.968085: + Pre-processing: IAV..UW[s3890]Im
201113-09:18:55,982 nipype.interface INFO:
stderr 2020-11-13T09:18:55.982059:++ Output dataset ./uni.nii.gz
201113-09:18:55,982 nipype.interface INFO:
stderr 2020-11-13T09:18:55.982339:++ ===== Elapsed = 74.0 sec
201113-09:18:56,193 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:18:56,194 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass".
201113-09:18:56,200 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:18:56,456 nipype.interface INFO:
stderr 2020-11-13T09:18:56.456340:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:18:56,456 nipype.interface INFO:
stderr 2020-11-13T09:18:56.456856:++ Authored by: Emperor Zhark
201113-09:18:56,460 nipype.interface INFO:
stderr 2020-11-13T09:18:56.460232:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:18:56,467 nipype.interface INFO:
stderr 2020-11-13T09:18:56.467119:++ Forming automask
201113-09:18:56,468 nipype.interface INFO:
stderr 2020-11-13T09:18:56.468898: + Fixed clip level = 404.127441
201113-09:18:56,472 nipype.interface INFO:
stderr 2020-11-13T09:18:56.472158: + Used gradual clip level = 367.895325 .. 477.972809
201113-09:18:56,472 nipype.interface INFO:
stderr 2020-11-13T09:18:56.472362: + Number voxels above clip level = 29949
201113-09:18:56,472 nipype.interface INFO:
stderr 2020-11-13T09:18:56.472526: + Clustering voxels ...
201113-09:18:56,473 nipype.interface INFO:
stderr 2020-11-13T09:18:56.473831: + Largest cluster has 29947 voxels
201113-09:18:56,475 nipype.interface INFO:
stderr 2020-11-13T09:18:56.475181: + Clustering voxels ...
201113-09:18:56,476 nipype.interface INFO:
stderr 2020-11-13T09:18:56.476272: + Largest cluster has 29540 voxels
201113-09:18:56,479 nipype.interface INFO:
stderr 2020-11-13T09:18:56.479876: + Filled 635 voxels in small holes; now have 30175 voxels
201113-09:18:56,482 nipype.interface INFO:
stderr 2020-11-13T09:18:56.482106: + Filled 2 voxels in large holes; now have 30177 voxels
201113-09:18:56,483 nipype.interface INFO:
stderr 2020-11-13T09:18:56.483341: + Clustering voxels ...
201113-09:18:56,484 nipype.interface INFO:
stderr 2020-11-13T09:18:56.484719: + Largest cluster has 30177 voxels
201113-09:18:56,484 nipype.interface INFO:
stderr 2020-11-13T09:18:56.484950: + Clustering non-brain voxels ...
201113-09:18:56,485 nipype.interface INFO:
stderr 2020-11-13T09:18:56.485096: + Clustering voxels ...
201113-09:18:56,487 nipype.interface INFO:
stderr 2020-11-13T09:18:56.487948: + Largest cluster has 109061 voxels
201113-09:18:56,488 nipype.interface INFO:
stderr 2020-11-13T09:18:56.488276: + Mask now has 30203 voxels
201113-09:18:56,488 nipype.interface INFO:
stderr 2020-11-13T09:18:56.488435:++ Dilating automask
201113-09:18:56,495 nipype.interface INFO:
stderr 2020-11-13T09:18:56.495343: + Clustering voxels ...
201113-09:18:56,497 nipype.interface INFO:
stderr 2020-11-13T09:18:56.497819: + Largest cluster has 103068 voxels
201113-09:18:56,498 nipype.interface INFO:
stderr 2020-11-13T09:18:56.498152:++ 36196 voxels in the mask [out of 139264: 25.99%]
201113-09:18:56,498 nipype.interface INFO:
stderr 2020-11-13T09:18:56.498322:++ first 9 x-planes are zero [from R]
201113-09:18:56,498 nipype.interface INFO:
stderr 2020-11-13T09:18:56.498494:++ last 9 x-planes are zero [from L]
201113-09:18:56,498 nipype.interface INFO:
stderr 2020-11-13T09:18:56.498637:++ first 5 y-planes are zero [from P]
201113-09:18:56,498 nipype.interface INFO:
stderr 2020-11-13T09:18:56.498778:++ last 4 y-planes are zero [from A]
201113-09:18:56,498 nipype.interface INFO:
stderr 2020-11-13T09:18:56.498911:++ first 0 z-planes are zero [from I]
201113-09:18:56,499 nipype.interface INFO:
stderr 2020-11-13T09:18:56.499051:++ last 3 z-planes are zero [from S]
201113-09:18:56,503 nipype.interface INFO:
stderr 2020-11-13T09:18:56.503035:++ Output dataset ./uni_mask.nii.gz
201113-09:18:56,503 nipype.interface INFO:
stderr 2020-11-13T09:18:56.503210:++ applying mask to original data
201113-09:18:56,503 nipype.interface INFO:
stderr 2020-11-13T09:18:56.503888:++ Writing masked data
201113-09:18:56,517 nipype.interface INFO:
stderr 2020-11-13T09:18:56.517874:++ Output dataset ./uni_masked.nii.gz
201113-09:18:56,518 nipype.interface INFO:
stderr 2020-11-13T09:18:56.518131:++ CPU time = 0.000000 sec
201113-09:18:56,703 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:18:56,705 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/combine_masks".
201113-09:18:56,711 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/combine_masks/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:18:57,152 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:18:57,153 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/cal_DVARS".
201113-09:18:57,160 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201113-09:18:57,614 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201113-09:18:57,615 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_extract_brain".
201113-09:18:57,623 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_motion_correct_mcflirt/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/combine_masks/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:18:57,872 nipype.interface INFO:
stderr 2020-11-13T09:18:57.872356:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:18:57,872 nipype.interface INFO:
stderr 2020-11-13T09:18:57.872709:++ Authored by: A cast of thousands
201113-09:18:59,357 nipype.interface INFO:
stderr 2020-11-13T09:18:59.357904:++ Output dataset ./sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:18:59,568 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:18:59,569 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_normalize".
201113-09:18:59,575 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_extract_brain/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_normalize/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201113-09:19:00,905 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:19:00,906 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mask_normalize".
201113-09:19:00,912 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_normalize/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mask_normalize/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:19:01,671 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:19:01,672 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mean".
201113-09:19:01,678 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mean/sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:19:01,925 nipype.interface INFO:
stderr 2020-11-13T09:19:01.925062:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:19:01,925 nipype.interface INFO:
stderr 2020-11-13T09:19:01.925403:++ Authored by: KR Hammett & RW Cox
201113-09:19:02,96 nipype.interface INFO:
stderr 2020-11-13T09:19:02.096741:++ Output dataset ./sub-128_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201113-09:19:02,284 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:19:02,285 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/norm_motion_params".
201113-09:19:02,290 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:19:02,518 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:19:02,520 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-2/qc_motion_0/_scan_vigilance_run-1/motion_plot".
201113-09:19:02,524 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201113-09:19:02,962 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.qc_motion_0.motion_plot".
201113-09:19:02,963 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/sinker_0_qc___movement_trans_plot".
201113-09:19:02,969 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:19:03,180 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc___movement_trans_plot/_scan_vigilance_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc/movement_trans_plot/_scan_vigilance_run-1/motion_trans_plot.png
201113-09:19:03,198 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_trans_plot".
201113-09:19:03,199 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/sinker_0_qc___movement_rot_plot".
201113-09:19:03,206 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:19:03,419 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc___movement_rot_plot/_scan_vigilance_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc/movement_rot_plot/_scan_vigilance_run-1/motion_rot_plot.png
201113-09:19:03,436 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_rot_plot".
201113-09:19:03,437 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/calc_motion_parameters".
201113-09:19:03,445 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:19:03,679 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201113-09:19:03,681 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/sinker_0_motion_params".
201113-09:19:03,688 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:19:03,919 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_motion_params".
201113-09:19:03,921 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/calculate_FD".
201113-09:19:03,925 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201113-09:19:04,158 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201113-09:19:04,159 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/sinker_0_frame_wise_displacement_power".
201113-09:19:04,166 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:19:04,398 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_power".
201113-09:19:04,400 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/calc_power_parameters".
201113-09:19:04,405 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:19:04,637 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201113-09:19:04,639 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/sinker_0_power_params".
201113-09:19:04,646 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:19:04,879 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_power_params".
201113-09:19:04,881 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/sinker_0_movement_parameters".
201113-09:19:04,888 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:19:05,120 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_movement_parameters".
201113-09:19:05,122 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/func_despiked_0".
201113-09:19:05,128 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-128_ses-2_task-vigilance_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/func_despiked_0/sub-128_ses-2_task-vigilance_run-1_bold_calc.nii.gz
201113-09:19:05,385 nipype.interface INFO:
stderr 2020-11-13T09:19:05.385829:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:19:05,386 nipype.interface INFO:
stderr 2020-11-13T09:19:05.386216:++ Authored by: RW Cox
201113-09:19:05,388 nipype.interface INFO:
stderr 2020-11-13T09:19:05.388072:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:19:05,388 nipype.interface INFO:
stderr 2020-11-13T09:19:05.388072: such as /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/func_despiked_0/sub-128_ses-2_task-vigilance_run-1_bold_calc.nii.gz,
201113-09:19:05,388 nipype.interface INFO:
stderr 2020-11-13T09:19:05.388072: or viewing/combining it with volumes of differing obliquity,
201113-09:19:05,388 nipype.interface INFO:
stderr 2020-11-13T09:19:05.388072: you should consider running:
201113-09:19:05,388 nipype.interface INFO:
stderr 2020-11-13T09:19:05.388072: 3dWarp -deoblique
201113-09:19:05,388 nipype.interface INFO:
stderr 2020-11-13T09:19:05.388072: on this and other oblique datasets in the same session.
201113-09:19:05,388 nipype.interface INFO:
stderr 2020-11-13T09:19:05.388072: See 3dWarp -help for details.
201113-09:19:05,388 nipype.interface INFO:
stderr 2020-11-13T09:19:05.388961:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/func_despiked_0/sub-128_ses-2_task-vigilance_run-1_bold_calc.nii.gz is 19.900011 degrees from plumb.
201113-09:19:05,389 nipype.interface INFO:
stderr 2020-11-13T09:19:05.389146:++ Input dataset is in short format, but output will be in float format
201113-09:19:05,389 nipype.interface INFO:
stderr 2020-11-13T09:19:05.389315:++ ignoring first 0 time points, using last 69
201113-09:19:05,389 nipype.interface INFO:
stderr 2020-11-13T09:19:05.389495:++ using 69 time points => -corder 2
201113-09:19:05,389 nipype.interface INFO:
stderr 2020-11-13T09:19:05.389660:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/func_despiked_0/sub-128_ses-2_task-vigilance_run-1_bold_calc.nii.gz
201113-09:19:05,640 nipype.interface INFO:
stderr 2020-11-13T09:19:05.640322:++ 33529 voxels in the automask [out of 139264 in dataset]
201113-09:19:05,645 nipype.interface INFO:
stderr 2020-11-13T09:19:05.645806:++ 57644 voxels in the dilated automask [out of 139264 in dataset]
201113-09:19:05,651 nipype.interface INFO:
stderr 2020-11-13T09:19:05.651760:++ Procesing time series with OLD model fit algorithm
201113-09:19:05,651 nipype.interface INFO:
stderr 2020-11-13T09:19:05.651939:++ smash edit thresholds: 3.1 .. 5.0 MADs
201113-09:19:05,652 nipype.interface INFO:
stderr 2020-11-13T09:19:05.652101: + [ 3.457% .. 0.072% of normal distribution]
201113-09:19:05,652 nipype.interface INFO:
stderr 2020-11-13T09:19:05.652254: + [ 8.839% .. 3.125% of Laplace distribution]
201113-09:19:05,652 nipype.interface INFO:
stderr 2020-11-13T09:19:05.652417:++ start OpenMP thread #0
201113-09:19:07,411 nipype.interface INFO:
stderr 2020-11-13T09:19:07.411666:..........................
201113-09:19:07,412 nipype.interface INFO:
stderr 2020-11-13T09:19:07.412131:++ Elapsed despike time = 1s 760ms
201113-09:19:07,412 nipype.interface INFO:
stderr 2020-11-13T09:19:07.412281:
201113-09:19:07,412 nipype.interface INFO:
stderr 2020-11-13T09:19:07.412853:++ FINAL: 3977436 data points, 325194 edits [8.176%], 77530 big edits [1.949%]
201113-09:19:09,499 nipype.interface INFO:
stderr 2020-11-13T09:19:09.499754:++ Output dataset ./sub-128_ses-2_task-vigilance_run-1_bold_calc_despike.nii.gz
201113-09:19:09,723 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_despiked_0".
201113-09:19:09,725 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-1/slice_timing".
201113-09:19:09,734 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:19:09,735 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-1/slice_timing/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike.nii.gz
201113-09:19:09,948 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:19:09,995 nipype.interface INFO:
stderr 2020-11-13T09:19:09.995778:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:19:09,998 nipype.interface INFO:
stderr 2020-11-13T09:19:09.998004:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:19:09,998 nipype.interface INFO:
stderr 2020-11-13T09:19:09.998004: such as /outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-1/slice_timing/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike.nii.gz,
201113-09:19:09,998 nipype.interface INFO:
stderr 2020-11-13T09:19:09.998004: or viewing/combining it with volumes of differing obliquity,
201113-09:19:09,998 nipype.interface INFO:
stderr 2020-11-13T09:19:09.998004: you should consider running:
201113-09:19:09,998 nipype.interface INFO:
stderr 2020-11-13T09:19:09.998004: 3dWarp -deoblique
201113-09:19:09,998 nipype.interface INFO:
stderr 2020-11-13T09:19:09.998004: on this and other oblique datasets in the same session.
201113-09:19:09,998 nipype.interface INFO:
stderr 2020-11-13T09:19:09.998004: See 3dWarp -help for details.
201113-09:19:09,998 nipype.interface INFO:
stderr 2020-11-13T09:19:09.998737:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-1/slice_timing/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike.nii.gz is 19.900011 degrees from plumb.
201113-09:19:12,742 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_slice_timing_correction_0.slice_timing".
201113-09:19:12,744 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique".
201113-09:19:12,778 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift.nii.gz
201113-09:19:13,32 nipype.interface INFO:
stderr 2020-11-13T09:19:13.032138:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:19:13,32 nipype.interface INFO:
stderr 2020-11-13T09:19:13.032526:++ Authored by: RW Cox
201113-09:19:13,34 nipype.interface INFO:
stderr 2020-11-13T09:19:13.034342:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift.nii.gz
201113-09:19:13,34 nipype.interface INFO:
stderr 2020-11-13T09:19:13.034956: + deoblique
201113-09:19:13,35 nipype.interface INFO:
stderr 2020-11-13T09:19:13.035147: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201113-09:19:14,191 nipype.interface INFO:
stderr 2020-11-13T09:19:14.191429:++ 3drefit processed 1 datasets
201113-09:19:14,400 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:19:14,402 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_reorient".
201113-09:19:14,408 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_reorient/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift.nii.gz
201113-09:19:16,73 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:19:16,74 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_RPI".
201113-09:19:16,81 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_RPI/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-09:19:16,327 nipype.interface INFO:
stderr 2020-11-13T09:19:16.327145:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:19:16,327 nipype.interface INFO:
stderr 2020-11-13T09:19:16.327707:++ Authored by: KR Hammett & RW Cox
201113-09:19:16,654 nipype.interface INFO:
stderr 2020-11-13T09:19:16.654112:++ Output dataset ./sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201113-09:19:16,841 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:19:16,842 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_generate_ref".
201113-09:19:16,850 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_RPI/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_generate_ref/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-09:19:17,103 nipype.interface INFO:
stderr 2020-11-13T09:19:17.103792:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:19:17,104 nipype.interface INFO:
stderr 2020-11-13T09:19:17.104176:++ Authored by: RW Cox
201113-09:19:17,111 nipype.interface INFO:
stderr 2020-11-13T09:19:17.111713:++ Coarse del was 10, replaced with 3
201113-09:20:14,436 nipype.interface INFO:
stderr 2020-11-13T09:20:14.436478:++ Max displacement in automask = 0.75 (mm) at sub-brick 68
201113-09:20:14,437 nipype.interface INFO:
stderr 2020-11-13T09:20:14.437027:++ Max delta displ in automask = 0.50 (mm) at sub-brick 64
201113-09:20:17,22 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:20:17,24 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_motion".
201113-09:20:17,31 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_motion/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201113-09:20:17,285 nipype.interface INFO:
stderr 2020-11-13T09:20:17.284932:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:20:17,285 nipype.interface INFO:
stderr 2020-11-13T09:20:17.285366:++ Authored by: KR Hammett & RW Cox
201113-09:20:17,722 nipype.interface INFO:
stderr 2020-11-13T09:20:17.722015:++ Output dataset ./sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201113-09:20:17,910 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:20:17,912 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_motion_correct_mcflirt".
201113-09:20:17,919 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_reorient/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_motion_correct_mcflirt/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_motion/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:20:29,750 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:20:29,755 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/sinker_0_motion_correct".
201113-09:20:29,763 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:20:29,988 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_motion_correct".
201113-09:20:29,990 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_mean_skull".
201113-09:20:29,997 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_mean_skull/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201113-09:20:30,245 nipype.interface INFO:
stderr 2020-11-13T09:20:30.245860:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:20:30,246 nipype.interface INFO:
stderr 2020-11-13T09:20:30.246203:++ Authored by: KR Hammett & RW Cox
201113-09:20:30,592 nipype.interface INFO:
stderr 2020-11-13T09:20:30.592538:++ Output dataset ./sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201113-09:20:30,782 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:20:30,783 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass".
201113-09:20:30,790 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_mean_skull/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:20:32,632 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:20:32,634 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_dilate".
201113-09:20:32,639 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_dilate/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:20:33,314 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:20:33,316 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_mask".
201113-09:20:33,321 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_dilate/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_mask/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:20:33,770 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:20:33,772 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/unifize".
201113-09:20:33,778 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/unifize/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:20:34,27 nipype.interface INFO:
stderr 2020-11-13T09:20:34.027235:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:21:48,62 nipype.interface INFO:
stderr 2020-11-13T09:21:48.061970: + Pre-processing: IAV..UW[s3891]Im
201113-09:21:48,77 nipype.interface INFO:
stderr 2020-11-13T09:21:48.077667:++ Output dataset ./uni.nii.gz
201113-09:21:48,77 nipype.interface INFO:
stderr 2020-11-13T09:21:48.077948:++ ===== Elapsed = 74.0 sec
201113-09:21:48,290 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:21:48,291 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass".
201113-09:21:48,300 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:21:48,554 nipype.interface INFO:
stderr 2020-11-13T09:21:48.554585:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:21:48,555 nipype.interface INFO:
stderr 2020-11-13T09:21:48.554995:++ Authored by: Emperor Zhark
201113-09:21:48,557 nipype.interface INFO:
stderr 2020-11-13T09:21:48.557682:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:21:48,562 nipype.interface INFO:
stderr 2020-11-13T09:21:48.562181:++ Forming automask
201113-09:21:48,564 nipype.interface INFO:
stderr 2020-11-13T09:21:48.564193: + Fixed clip level = 404.051544
201113-09:21:48,568 nipype.interface INFO:
stderr 2020-11-13T09:21:48.568603: + Used gradual clip level = 367.827087 .. 478.210083
201113-09:21:48,568 nipype.interface INFO:
stderr 2020-11-13T09:21:48.568814: + Number voxels above clip level = 29937
201113-09:21:48,568 nipype.interface INFO:
stderr 2020-11-13T09:21:48.568970: + Clustering voxels ...
201113-09:21:48,570 nipype.interface INFO:
stderr 2020-11-13T09:21:48.570061: + Largest cluster has 29935 voxels
201113-09:21:48,571 nipype.interface INFO:
stderr 2020-11-13T09:21:48.571394: + Clustering voxels ...
201113-09:21:48,572 nipype.interface INFO:
stderr 2020-11-13T09:21:48.572491: + Largest cluster has 29520 voxels
201113-09:21:48,575 nipype.interface INFO:
stderr 2020-11-13T09:21:48.575852: + Filled 635 voxels in small holes; now have 30155 voxels
201113-09:21:48,578 nipype.interface INFO:
stderr 2020-11-13T09:21:48.578065: + Filled 1 voxels in large holes; now have 30156 voxels
201113-09:21:48,579 nipype.interface INFO:
stderr 2020-11-13T09:21:48.579317: + Clustering voxels ...
201113-09:21:48,580 nipype.interface INFO:
stderr 2020-11-13T09:21:48.580399: + Largest cluster has 30156 voxels
201113-09:21:48,580 nipype.interface INFO:
stderr 2020-11-13T09:21:48.580627: + Clustering non-brain voxels ...
201113-09:21:48,580 nipype.interface INFO:
stderr 2020-11-13T09:21:48.580771: + Clustering voxels ...
201113-09:21:48,583 nipype.interface INFO:
stderr 2020-11-13T09:21:48.583667: + Largest cluster has 109082 voxels
201113-09:21:48,584 nipype.interface INFO:
stderr 2020-11-13T09:21:48.583996: + Mask now has 30182 voxels
201113-09:21:48,584 nipype.interface INFO:
stderr 2020-11-13T09:21:48.584148:++ Dilating automask
201113-09:21:48,591 nipype.interface INFO:
stderr 2020-11-13T09:21:48.591060: + Clustering voxels ...
201113-09:21:48,593 nipype.interface INFO:
stderr 2020-11-13T09:21:48.593469: + Largest cluster has 103094 voxels
201113-09:21:48,593 nipype.interface INFO:
stderr 2020-11-13T09:21:48.593801:++ 36170 voxels in the mask [out of 139264: 25.97%]
201113-09:21:48,593 nipype.interface INFO:
stderr 2020-11-13T09:21:48.593972:++ first 9 x-planes are zero [from R]
201113-09:21:48,594 nipype.interface INFO:
stderr 2020-11-13T09:21:48.594136:++ last 9 x-planes are zero [from L]
201113-09:21:48,594 nipype.interface INFO:
stderr 2020-11-13T09:21:48.594280:++ first 5 y-planes are zero [from P]
201113-09:21:48,594 nipype.interface INFO:
stderr 2020-11-13T09:21:48.594431:++ last 4 y-planes are zero [from A]
201113-09:21:48,594 nipype.interface INFO:
stderr 2020-11-13T09:21:48.594565:++ first 0 z-planes are zero [from I]
201113-09:21:48,594 nipype.interface INFO:
stderr 2020-11-13T09:21:48.594704:++ last 3 z-planes are zero [from S]
201113-09:21:48,598 nipype.interface INFO:
stderr 2020-11-13T09:21:48.598939:++ Output dataset ./uni_mask.nii.gz
201113-09:21:48,599 nipype.interface INFO:
stderr 2020-11-13T09:21:48.599155:++ applying mask to original data
201113-09:21:48,600 nipype.interface INFO:
stderr 2020-11-13T09:21:48.600029:++ Writing masked data
201113-09:21:48,614 nipype.interface INFO:
stderr 2020-11-13T09:21:48.614453:++ Output dataset ./uni_masked.nii.gz
201113-09:21:48,614 nipype.interface INFO:
stderr 2020-11-13T09:21:48.614885:++ CPU time = 0.000000 sec
201113-09:21:48,802 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:21:48,803 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/combine_masks".
201113-09:21:48,810 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/combine_masks/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:21:49,251 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:21:49,252 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201113-09:21:49,257 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-09:21:49,486 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201113-09:21:49,488 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201113-09:21:49,494 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:21:49,744 nipype.interface INFO:
stderr 2020-11-13T09:21:49.744176:++ no -frac option: defaulting to -union
201113-09:21:49,744 nipype.interface INFO:
stderr 2020-11-13T09:21:49.744783:++ processing 1 input dataset(s), NN=2...
201113-09:21:49,745 nipype.interface INFO:
stderr 2020-11-13T09:21:49.744988:++ padding all datasets by 0 (for dilations)
201113-09:21:49,749 nipype.interface INFO:
stderr 2020-11-13T09:21:49.749679:++ frac 0 over 1 volumes gives min count 0
201113-09:21:49,750 nipype.interface INFO:
stderr 2020-11-13T09:21:49.750085:++ voxel limits: 0 clipped, 36099 survived, 103165 were zero
201113-09:21:49,750 nipype.interface INFO:
stderr 2020-11-13T09:21:49.750263:++ writing result sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201113-09:21:49,754 nipype.interface INFO:
stderr 2020-11-13T09:21:49.754471:++ Output dataset ./sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201113-09:21:49,940 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201113-09:21:49,941 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/sinker_0_functional_brain_mask".
201113-09:21:49,948 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:21:50,177 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_functional_brain_mask".
201113-09:21:50,179 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/functional_brain_mask_derivative_0".
201113-09:21:50,183 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201113-09:21:50,392 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201113-09:21:50,398 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:21:50,906 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201113-09:21:50,923 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.functional_brain_mask_derivative_0".
201113-09:21:50,924 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_extract_brain".
201113-09:21:50,931 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_motion_correct_mcflirt/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/combine_masks/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:21:51,181 nipype.interface INFO:
stderr 2020-11-13T09:21:51.181283:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:21:51,181 nipype.interface INFO:
stderr 2020-11-13T09:21:51.181663:++ Authored by: A cast of thousands
201113-09:21:52,824 nipype.interface INFO:
stderr 2020-11-13T09:21:52.824529:++ Output dataset ./sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:21:53,6 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:21:53,8 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_normalize".
201113-09:21:53,13 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_extract_brain/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_normalize/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201113-09:21:54,441 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:21:54,443 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201113-09:21:54,449 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_normalize/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:21:55,136 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201113-09:21:55,138 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201113-09:21:55,143 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:21:55,386 nipype.interface INFO:
stderr 2020-11-13T09:21:55.386099:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:21:55,386 nipype.interface INFO:
stderr 2020-11-13T09:21:55.386418:++ Authored by: KR Hammett & RW Cox
201113-09:21:55,696 nipype.interface INFO:
stderr 2020-11-13T09:21:55.696614:++ Output dataset ./sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:21:55,884 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.functional_mean".
201113-09:21:55,886 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-128_ses-2/qc_snr_0/_scan_vigilance_run-1/std_dev".
201113-09:21:55,892 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/combine_masks/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/qc_snr_0/_scan_vigilance_run-1/std_dev/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:21:56,134 nipype.interface INFO:
stderr 2020-11-13T09:21:56.134135:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:21:56,134 nipype.interface INFO:
stderr 2020-11-13T09:21:56.134451:++ Authored by: KR Hammett & RW Cox
201113-09:21:56,419 nipype.interface INFO:
stderr 2020-11-13T09:21:56.419628:++ Output dataset ./sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:21:56,608 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.qc_snr_0.std_dev".
201113-09:21:56,610 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/sinker_0_functional_preprocessed".
201113-09:21:56,617 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:21:56,846 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed".
201113-09:21:56,847 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mask_normalize".
201113-09:21:56,853 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_normalize/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mask_normalize/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:21:57,632 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:21:57,633 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/sinker_0_functional_preprocessed_mask".
201113-09:21:57,640 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:21:57,868 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed_mask".
201113-09:21:57,870 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mean".
201113-09:21:57,875 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mean/sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:21:58,123 nipype.interface INFO:
stderr 2020-11-13T09:21:58.123649:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:21:58,124 nipype.interface INFO:
stderr 2020-11-13T09:21:58.123979:++ Authored by: KR Hammett & RW Cox
201113-09:21:58,421 nipype.interface INFO:
stderr 2020-11-13T09:21:58.421410:++ Output dataset ./sub-128_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201113-09:21:58,604 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:21:58,605 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/sinker_0_mean_functional".
201113-09:21:58,612 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:21:58,840 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_mean_functional".
201113-09:21:58,842 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/norm_motion_params".
201113-09:21:58,846 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:21:59,78 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:21:59,80 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/sinker_0_slice_time_corrected".
201113-09:21:59,87 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:21:59,318 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_slice_time_corrected".
201113-09:21:59,320 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_vigilance_run-1/sinker_0_raw_functional".
201113-09:21:59,328 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:21:59,642 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_raw_functional".
201113-09:21:59,644 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_vigilance_run-1/check_func_scan".
201113-09:21:59,681 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201113-09:21:59,915 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.check_func_scan".
201113-09:21:59,927 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_tgng_run-3/select_scan_params".
201113-09:21:59,958 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:22:00,194 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.select_scan_params".
201113-09:22:00,206 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_tgng_run-3/s3_scan_params".
201113-09:22:00,214 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:22:00,442 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.s3_scan_params".
201113-09:22:00,445 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/scan_params_0".
201113-09:22:00,454 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-09:22:00,687 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.scan_params_0".
201113-09:22:00,690 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_tgng_run-3/selectrest".
201113-09:22:00,724 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-09:22:00,955 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.selectrest".
201113-09:22:00,965 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_tgng_run-3/check_for_s3".
201113-09:22:00,970 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-09:22:01,258 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.check_for_s3".
201113-09:22:01,259 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-128_ses-2/edit_func_0/_scan_tgng_run-3/func_get_idx".
201113-09:22:01,267 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-09:22:01,500 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.edit_func_0.func_get_idx".
201113-09:22:01,502 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-128_ses-2/edit_func_0/_scan_tgng_run-3/func_drop_trs".
201113-09:22:01,508 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-128/ses-2/func/sub-128_ses-2_task-tgng_run-3_bold.nii.gz[0..129] -expr "a" -prefix sub-128_ses-2_task-tgng_run-3_bold_calc.nii.gz
201113-09:22:01,759 nipype.interface INFO:
stderr 2020-11-13T09:22:01.759902:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:22:01,760 nipype.interface INFO:
stderr 2020-11-13T09:22:01.760278:++ Authored by: A cast of thousands
201113-09:22:07,499 nipype.interface INFO:
stderr 2020-11-13T09:22:07.499695:++ Output dataset ./sub-128_ses-2_task-tgng_run-3_bold_calc.nii.gz
201113-09:22:07,691 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.edit_func_0.func_drop_trs".
201113-09:22:07,692 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique".
201113-09:22:07,739 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-128_ses-2_task-tgng_run-3_bold_calc.nii.gz
201113-09:22:07,988 nipype.interface INFO:
stderr 2020-11-13T09:22:07.988420:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:22:07,988 nipype.interface INFO:
stderr 2020-11-13T09:22:07.988778:++ Authored by: RW Cox
201113-09:22:07,991 nipype.interface INFO:
stderr 2020-11-13T09:22:07.991449:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-128_ses-2_task-tgng_run-3_bold_calc.nii.gz
201113-09:22:07,992 nipype.interface INFO:
stderr 2020-11-13T09:22:07.992055: + deoblique
201113-09:22:07,992 nipype.interface INFO:
stderr 2020-11-13T09:22:07.992243: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-128_ses-2_task-tgng_run-3_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-128_ses-2_task-tgng_run-3_bold_calc.nii.gz in NIFTI storage)
201113-09:22:11,849 nipype.interface INFO:
stderr 2020-11-13T09:22:11.849200:++ 3drefit processed 1 datasets
201113-09:22:12,66 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:22:12,67 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient".
201113-09:22:12,74 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-2_task-tgng_run-3_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient/sub-128_ses-2_task-tgng_run-3_bold_calc.nii.gz
201113-09:22:16,558 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:22:16,559 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI".
201113-09:22:16,566 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-3_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI/sub-128_ses-2_task-tgng_run-3_bold_calc_resample.nii.gz
201113-09:22:16,813 nipype.interface INFO:
stderr 2020-11-13T09:22:16.813084:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:22:16,813 nipype.interface INFO:
stderr 2020-11-13T09:22:16.813404:++ Authored by: KR Hammett & RW Cox
201113-09:22:17,276 nipype.interface INFO:
stderr 2020-11-13T09:22:17.276158:++ Output dataset ./sub-128_ses-2_task-tgng_run-3_bold_calc_resample_tstat.nii.gz
201113-09:22:17,465 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:22:17,467 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_generate_ref".
201113-09:22:17,475 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-2_task-tgng_run-3_bold_calc_resample.1D -1Dmatrix_save sub-128_ses-2_task-tgng_run-3_bold_calc_resample.aff12.1D -prefix sub-128_ses-2_task-tgng_run-3_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI/sub-128_ses-2_task-tgng_run-3_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-2_task-tgng_run-3_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_generate_ref/sub-128_ses-2_task-tgng_run-3_bold_calc_resample.nii.gz
201113-09:22:17,721 nipype.interface INFO:
stderr 2020-11-13T09:22:17.721891:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:22:17,722 nipype.interface INFO:
stderr 2020-11-13T09:22:17.722203:++ Authored by: RW Cox
201113-09:22:17,731 nipype.interface INFO:
stderr 2020-11-13T09:22:17.731892:++ Coarse del was 10, replaced with 3
201113-09:24:04,603 nipype.interface INFO:
stderr 2020-11-13T09:24:04.603152:++ Max displacement in automask = 4.71 (mm) at sub-brick 86
201113-09:24:04,603 nipype.interface INFO:
stderr 2020-11-13T09:24:04.603709:++ Max delta displ in automask = 3.16 (mm) at sub-brick 85
201113-09:24:08,361 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:24:08,363 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion".
201113-09:24:08,369 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-3_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion/sub-128_ses-2_task-tgng_run-3_bold_calc_resample_volreg.nii.gz
201113-09:24:08,633 nipype.interface INFO:
stderr 2020-11-13T09:24:08.633892:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:24:08,634 nipype.interface INFO:
stderr 2020-11-13T09:24:08.634239:++ Authored by: KR Hammett & RW Cox
201113-09:24:09,103 nipype.interface INFO:
stderr 2020-11-13T09:24:09.103120:++ Output dataset ./sub-128_ses-2_task-tgng_run-3_bold_calc_resample_volreg_tstat.nii.gz
201113-09:24:09,287 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:24:09,289 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt".
201113-09:24:09,295 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient/sub-128_ses-2_task-tgng_run-3_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt/sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion/sub-128_ses-2_task-tgng_run-3_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:24:32,112 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:24:32,122 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/calculate_FDJ".
201113-09:24:32,128 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201113-09:24:32,361 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201113-09:24:32,362 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/sinker_0_frame_wise_displacement_jenkinson".
201113-09:24:32,368 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:24:32,599 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201113-09:24:32,601 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/sinker_0_max_displacement".
201113-09:24:32,610 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:24:32,840 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_max_displacement".
201113-09:24:32,842 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/sinker_0_coordinate_transformation".
201113-09:24:32,860 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:24:33,126 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_coordinate_transformation".
201113-09:24:33,138 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull".
201113-09:24:33,145 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull/sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf.nii.gz
201113-09:24:33,394 nipype.interface INFO:
stderr 2020-11-13T09:24:33.393976:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:24:33,394 nipype.interface INFO:
stderr 2020-11-13T09:24:33.394312:++ Authored by: KR Hammett & RW Cox
201113-09:24:33,898 nipype.interface INFO:
stderr 2020-11-13T09:24:33.898338:++ Output dataset ./sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf_tstat.nii.gz
201113-09:24:34,85 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:24:34,86 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass".
201113-09:24:34,92 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull/sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:24:35,911 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:24:35,912 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate".
201113-09:24:35,918 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate/sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:24:36,617 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:24:36,618 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_mask".
201113-09:24:36,624 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate/sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_mask/sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:24:37,68 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:24:37,70 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/unifize".
201113-09:24:37,76 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/unifize/sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:24:37,333 nipype.interface INFO:
stderr 2020-11-13T09:24:37.333355:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:25:51,479 nipype.interface INFO:
stderr 2020-11-13T09:25:51.479803: + Pre-processing: IAV..UW[s4088]Im
201113-09:25:51,494 nipype.interface INFO:
stderr 2020-11-13T09:25:51.494202:++ Output dataset ./uni.nii.gz
201113-09:25:51,496 nipype.interface INFO:
stderr 2020-11-13T09:25:51.496371:++ ===== Elapsed = 74.2 sec
201113-09:25:51,704 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:25:51,705 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass".
201113-09:25:51,710 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni.nii.gz
201113-09:25:51,962 nipype.interface INFO:
stderr 2020-11-13T09:25:51.962108:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:25:51,962 nipype.interface INFO:
stderr 2020-11-13T09:25:51.962760:++ Authored by: Emperor Zhark
201113-09:25:51,965 nipype.interface INFO:
stderr 2020-11-13T09:25:51.965392:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni.nii.gz
201113-09:25:51,970 nipype.interface INFO:
stderr 2020-11-13T09:25:51.970460:++ Forming automask
201113-09:25:51,972 nipype.interface INFO:
stderr 2020-11-13T09:25:51.972272: + Fixed clip level = 408.101807
201113-09:25:51,976 nipype.interface INFO:
stderr 2020-11-13T09:25:51.976879: + Used gradual clip level = 371.957581 .. 483.787231
201113-09:25:51,977 nipype.interface INFO:
stderr 2020-11-13T09:25:51.977141: + Number voxels above clip level = 30006
201113-09:25:51,977 nipype.interface INFO:
stderr 2020-11-13T09:25:51.977335: + Clustering voxels ...
201113-09:25:51,978 nipype.interface INFO:
stderr 2020-11-13T09:25:51.978707: + Largest cluster has 30001 voxels
201113-09:25:51,980 nipype.interface INFO:
stderr 2020-11-13T09:25:51.980030: + Clustering voxels ...
201113-09:25:51,981 nipype.interface INFO:
stderr 2020-11-13T09:25:51.981121: + Largest cluster has 29644 voxels
201113-09:25:51,984 nipype.interface INFO:
stderr 2020-11-13T09:25:51.984968: + Filled 582 voxels in small holes; now have 30226 voxels
201113-09:25:51,988 nipype.interface INFO:
stderr 2020-11-13T09:25:51.988208: + Filled 4 voxels in large holes; now have 30230 voxels
201113-09:25:51,989 nipype.interface INFO:
stderr 2020-11-13T09:25:51.989450: + Clustering voxels ...
201113-09:25:51,990 nipype.interface INFO:
stderr 2020-11-13T09:25:51.990526: + Largest cluster has 30230 voxels
201113-09:25:51,990 nipype.interface INFO:
stderr 2020-11-13T09:25:51.990754: + Clustering non-brain voxels ...
201113-09:25:51,990 nipype.interface INFO:
stderr 2020-11-13T09:25:51.990902: + Clustering voxels ...
201113-09:25:51,993 nipype.interface INFO:
stderr 2020-11-13T09:25:51.993786: + Largest cluster has 109018 voxels
201113-09:25:51,994 nipype.interface INFO:
stderr 2020-11-13T09:25:51.994114: + Mask now has 30246 voxels
201113-09:25:51,994 nipype.interface INFO:
stderr 2020-11-13T09:25:51.994265:++ Dilating automask
201113-09:25:52,2 nipype.interface INFO:
stderr 2020-11-13T09:25:52.002723: + Clustering voxels ...
201113-09:25:52,5 nipype.interface INFO:
stderr 2020-11-13T09:25:52.005216: + Largest cluster has 102965 voxels
201113-09:25:52,5 nipype.interface INFO:
stderr 2020-11-13T09:25:52.005553:++ 36299 voxels in the mask [out of 139264: 26.06%]
201113-09:25:52,5 nipype.interface INFO:
stderr 2020-11-13T09:25:52.005726:++ first 9 x-planes are zero [from R]
201113-09:25:52,5 nipype.interface INFO:
stderr 2020-11-13T09:25:52.005888:++ last 9 x-planes are zero [from L]
201113-09:25:52,6 nipype.interface INFO:
stderr 2020-11-13T09:25:52.006031:++ first 5 y-planes are zero [from P]
201113-09:25:52,6 nipype.interface INFO:
stderr 2020-11-13T09:25:52.006171:++ last 4 y-planes are zero [from A]
201113-09:25:52,6 nipype.interface INFO:
stderr 2020-11-13T09:25:52.006303:++ first 0 z-planes are zero [from I]
201113-09:25:52,6 nipype.interface INFO:
stderr 2020-11-13T09:25:52.006449:++ last 2 z-planes are zero [from S]
201113-09:25:52,10 nipype.interface INFO:
stderr 2020-11-13T09:25:52.010344:++ Output dataset ./uni_mask.nii.gz
201113-09:25:52,10 nipype.interface INFO:
stderr 2020-11-13T09:25:52.010548:++ applying mask to original data
201113-09:25:52,11 nipype.interface INFO:
stderr 2020-11-13T09:25:52.011232:++ Writing masked data
201113-09:25:52,23 nipype.interface INFO:
stderr 2020-11-13T09:25:52.023939:++ Output dataset ./uni_masked.nii.gz
201113-09:25:52,24 nipype.interface INFO:
stderr 2020-11-13T09:25:52.024264:++ CPU time = 0.000000 sec
201113-09:25:52,212 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:25:52,214 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks".
201113-09:25:52,220 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:25:52,665 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:25:52,667 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/cal_DVARS".
201113-09:25:52,675 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201113-09:25:53,363 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201113-09:25:53,364 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_extract_brain".
201113-09:25:53,371 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt/sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf_calc.nii.gz
201113-09:25:53,613 nipype.interface INFO:
stderr 2020-11-13T09:25:53.613781:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:25:53,614 nipype.interface INFO:
stderr 2020-11-13T09:25:53.614095:++ Authored by: A cast of thousands
201113-09:25:56,369 nipype.interface INFO:
stderr 2020-11-13T09:25:56.369171:++ Output dataset ./sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf_calc.nii.gz
201113-09:25:56,557 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:25:56,559 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize".
201113-09:25:56,564 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_extract_brain/sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize/sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201113-09:25:58,808 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:25:58,809 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mask_normalize".
201113-09:25:58,816 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize/sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mask_normalize/sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:25:59,879 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:25:59,880 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean".
201113-09:25:59,886 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean/sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf_calc.nii.gz
201113-09:26:00,132 nipype.interface INFO:
stderr 2020-11-13T09:26:00.132449:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:26:00,132 nipype.interface INFO:
stderr 2020-11-13T09:26:00.132756:++ Authored by: KR Hammett & RW Cox
201113-09:26:00,443 nipype.interface INFO:
stderr 2020-11-13T09:26:00.443017:++ Output dataset ./sub-128_ses-2_task-tgng_run-3_bold_calc_resample_mcf_calc_tstat.nii.gz
201113-09:26:00,633 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:26:00,634 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/norm_motion_params".
201113-09:26:00,640 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:26:00,872 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:26:00,873 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-2/qc_motion_0/_scan_tgng_run-3/motion_plot".
201113-09:26:00,877 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201113-09:26:01,324 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.qc_motion_0.motion_plot".
201113-09:26:01,326 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/sinker_0_qc___movement_trans_plot".
201113-09:26:01,332 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:26:01,545 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc___movement_trans_plot/_scan_tgng_run-3/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc/movement_trans_plot/_scan_tgng_run-3/motion_trans_plot.png
201113-09:26:01,563 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_trans_plot".
201113-09:26:01,564 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/sinker_0_qc___movement_rot_plot".
201113-09:26:01,571 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:26:01,781 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc___movement_rot_plot/_scan_tgng_run-3/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc/movement_rot_plot/_scan_tgng_run-3/motion_rot_plot.png
201113-09:26:01,798 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_rot_plot".
201113-09:26:01,799 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/calc_motion_parameters".
201113-09:26:01,806 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:26:02,40 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201113-09:26:02,42 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/sinker_0_motion_params".
201113-09:26:02,49 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:26:02,281 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_motion_params".
201113-09:26:02,283 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/calculate_FD".
201113-09:26:02,287 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201113-09:26:02,522 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201113-09:26:02,524 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/sinker_0_frame_wise_displacement_power".
201113-09:26:02,531 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:26:02,765 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_power".
201113-09:26:02,767 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/calc_power_parameters".
201113-09:26:02,772 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:26:03,4 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201113-09:26:03,5 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/sinker_0_power_params".
201113-09:26:03,13 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:26:03,245 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_power_params".
201113-09:26:03,246 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/sinker_0_movement_parameters".
201113-09:26:03,254 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:26:03,483 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_movement_parameters".
201113-09:26:03,484 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/func_despiked_0".
201113-09:26:03,490 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-128_ses-2_task-tgng_run-3_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/func_despiked_0/sub-128_ses-2_task-tgng_run-3_bold_calc.nii.gz
201113-09:26:03,742 nipype.interface INFO:
stderr 2020-11-13T09:26:03.742299:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:26:03,742 nipype.interface INFO:
stderr 2020-11-13T09:26:03.742742:++ Authored by: RW Cox
201113-09:26:03,744 nipype.interface INFO:
stderr 2020-11-13T09:26:03.744828:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:26:03,745 nipype.interface INFO:
stderr 2020-11-13T09:26:03.744828: such as /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/func_despiked_0/sub-128_ses-2_task-tgng_run-3_bold_calc.nii.gz,
201113-09:26:03,745 nipype.interface INFO:
stderr 2020-11-13T09:26:03.744828: or viewing/combining it with volumes of differing obliquity,
201113-09:26:03,745 nipype.interface INFO:
stderr 2020-11-13T09:26:03.744828: you should consider running:
201113-09:26:03,745 nipype.interface INFO:
stderr 2020-11-13T09:26:03.744828: 3dWarp -deoblique
201113-09:26:03,745 nipype.interface INFO:
stderr 2020-11-13T09:26:03.744828: on this and other oblique datasets in the same session.
201113-09:26:03,745 nipype.interface INFO:
stderr 2020-11-13T09:26:03.744828: See 3dWarp -help for details.
201113-09:26:03,745 nipype.interface INFO:
stderr 2020-11-13T09:26:03.745934:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/func_despiked_0/sub-128_ses-2_task-tgng_run-3_bold_calc.nii.gz is 19.900011 degrees from plumb.
201113-09:26:03,746 nipype.interface INFO:
stderr 2020-11-13T09:26:03.746125:++ Input dataset is in short format, but output will be in float format
201113-09:26:03,746 nipype.interface INFO:
stderr 2020-11-13T09:26:03.746299:++ ignoring first 0 time points, using last 130
201113-09:26:03,746 nipype.interface INFO:
stderr 2020-11-13T09:26:03.746484:++ using 130 time points => -corder 4
201113-09:26:03,746 nipype.interface INFO:
stderr 2020-11-13T09:26:03.746652:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/func_despiked_0/sub-128_ses-2_task-tgng_run-3_bold_calc.nii.gz
201113-09:26:04,207 nipype.interface INFO:
stderr 2020-11-13T09:26:04.207096:++ 33487 voxels in the automask [out of 139264 in dataset]
201113-09:26:04,212 nipype.interface INFO:
stderr 2020-11-13T09:26:04.212659:++ 57684 voxels in the dilated automask [out of 139264 in dataset]
201113-09:26:04,223 nipype.interface INFO:
stderr 2020-11-13T09:26:04.223599:++ Procesing time series with OLD model fit algorithm
201113-09:26:04,223 nipype.interface INFO:
stderr 2020-11-13T09:26:04.223786:++ smash edit thresholds: 3.1 .. 5.0 MADs
201113-09:26:04,223 nipype.interface INFO:
stderr 2020-11-13T09:26:04.223950: + [ 3.457% .. 0.072% of normal distribution]
201113-09:26:04,224 nipype.interface INFO:
stderr 2020-11-13T09:26:04.224103: + [ 8.839% .. 3.125% of Laplace distribution]
201113-09:26:04,224 nipype.interface INFO:
stderr 2020-11-13T09:26:04.224262:++ start OpenMP thread #0
201113-09:26:10,185 nipype.interface INFO:
stderr 2020-11-13T09:26:10.185879:..........................
201113-09:26:10,186 nipype.interface INFO:
stderr 2020-11-13T09:26:10.186363:++ Elapsed despike time = 5s 962ms
201113-09:26:10,186 nipype.interface INFO:
stderr 2020-11-13T09:26:10.186523:
201113-09:26:10,187 nipype.interface INFO:
stderr 2020-11-13T09:26:10.187356:++ FINAL: 7498920 data points, 644920 edits [8.600%], 231928 big edits [3.093%]
201113-09:26:14,133 nipype.interface INFO:
stderr 2020-11-13T09:26:14.133411:++ Output dataset ./sub-128_ses-2_task-tgng_run-3_bold_calc_despike.nii.gz
201113-09:26:14,363 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_despiked_0".
201113-09:26:14,365 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_tgng_run-3/slice_timing".
201113-09:26:14,373 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:26:14,374 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_tgng_run-3/slice_timing/sub-128_ses-2_task-tgng_run-3_bold_calc_despike.nii.gz
201113-09:26:14,583 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:26:14,617 nipype.interface INFO:
stderr 2020-11-13T09:26:14.617656:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:26:14,620 nipype.interface INFO:
stderr 2020-11-13T09:26:14.620604:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:26:14,620 nipype.interface INFO:
stderr 2020-11-13T09:26:14.620604: such as /outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_tgng_run-3/slice_timing/sub-128_ses-2_task-tgng_run-3_bold_calc_despike.nii.gz,
201113-09:26:14,620 nipype.interface INFO:
stderr 2020-11-13T09:26:14.620604: or viewing/combining it with volumes of differing obliquity,
201113-09:26:14,620 nipype.interface INFO:
stderr 2020-11-13T09:26:14.620604: you should consider running:
201113-09:26:14,621 nipype.interface INFO:
stderr 2020-11-13T09:26:14.620604: 3dWarp -deoblique
201113-09:26:14,621 nipype.interface INFO:
stderr 2020-11-13T09:26:14.620604: on this and other oblique datasets in the same session.
201113-09:26:14,621 nipype.interface INFO:
stderr 2020-11-13T09:26:14.620604: See 3dWarp -help for details.
201113-09:26:14,621 nipype.interface INFO:
stderr 2020-11-13T09:26:14.621311:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_tgng_run-3/slice_timing/sub-128_ses-2_task-tgng_run-3_bold_calc_despike.nii.gz is 19.900011 degrees from plumb.
201113-09:26:18,900 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_slice_timing_correction_0.slice_timing".
201113-09:26:18,901 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique".
201113-09:26:18,955 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift.nii.gz
201113-09:26:19,206 nipype.interface INFO:
stderr 2020-11-13T09:26:19.206314:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:26:19,206 nipype.interface INFO:
stderr 2020-11-13T09:26:19.206679:++ Authored by: RW Cox
201113-09:26:19,208 nipype.interface INFO:
stderr 2020-11-13T09:26:19.208720:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift.nii.gz
201113-09:26:19,209 nipype.interface INFO:
stderr 2020-11-13T09:26:19.209346: + deoblique
201113-09:26:19,209 nipype.interface INFO:
stderr 2020-11-13T09:26:19.209575: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201113-09:26:21,389 nipype.interface INFO:
stderr 2020-11-13T09:26:21.389026:++ 3drefit processed 1 datasets
201113-09:26:21,596 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:26:21,598 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient".
201113-09:26:21,604 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift.nii.gz
201113-09:26:24,355 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:26:24,356 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI".
201113-09:26:24,363 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample.nii.gz
201113-09:26:24,606 nipype.interface INFO:
stderr 2020-11-13T09:26:24.606194:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:26:24,606 nipype.interface INFO:
stderr 2020-11-13T09:26:24.606517:++ Authored by: KR Hammett & RW Cox
201113-09:26:25,203 nipype.interface INFO:
stderr 2020-11-13T09:26:25.203264:++ Output dataset ./sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_tstat.nii.gz
201113-09:26:25,392 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:26:25,393 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_generate_ref".
201113-09:26:25,399 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_generate_ref/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample.nii.gz
201113-09:26:25,663 nipype.interface INFO:
stderr 2020-11-13T09:26:25.663326:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:26:25,663 nipype.interface INFO:
stderr 2020-11-13T09:26:25.663784:++ Authored by: RW Cox
201113-09:26:25,672 nipype.interface INFO:
stderr 2020-11-13T09:26:25.672220:++ Coarse del was 10, replaced with 3
201113-09:28:12,318 nipype.interface INFO:
stderr 2020-11-13T09:28:12.318408:++ Max displacement in automask = 1.12 (mm) at sub-brick 124
201113-09:28:12,318 nipype.interface INFO:
stderr 2020-11-13T09:28:12.318901:++ Max delta displ in automask = 0.74 (mm) at sub-brick 69
201113-09:28:17,71 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:28:17,73 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion".
201113-09:28:17,79 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_volreg.nii.gz
201113-09:28:17,331 nipype.interface INFO:
stderr 2020-11-13T09:28:17.331360:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:28:17,331 nipype.interface INFO:
stderr 2020-11-13T09:28:17.331892:++ Authored by: KR Hammett & RW Cox
201113-09:28:18,122 nipype.interface INFO:
stderr 2020-11-13T09:28:18.122344:++ Output dataset ./sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201113-09:28:18,321 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:28:18,323 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt".
201113-09:28:18,330 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:28:39,407 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:28:39,416 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/sinker_0_motion_correct".
201113-09:28:39,424 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:28:39,648 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_motion_correct".
201113-09:28:39,650 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull".
201113-09:28:39,658 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz
201113-09:28:39,905 nipype.interface INFO:
stderr 2020-11-13T09:28:39.904956:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:28:39,905 nipype.interface INFO:
stderr 2020-11-13T09:28:39.905290:++ Authored by: KR Hammett & RW Cox
201113-09:28:40,536 nipype.interface INFO:
stderr 2020-11-13T09:28:40.536175:++ Output dataset ./sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201113-09:28:40,722 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:28:40,723 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass".
201113-09:28:40,727 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:28:42,581 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:28:42,583 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate".
201113-09:28:42,589 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:28:43,256 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:28:43,258 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_mask".
201113-09:28:43,265 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_mask/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:28:43,712 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:28:43,713 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/unifize".
201113-09:28:43,720 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/unifize/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:28:43,964 nipype.interface INFO:
stderr 2020-11-13T09:28:43.964407:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:29:58,70 nipype.interface INFO:
stderr 2020-11-13T09:29:58.070276: + Pre-processing: IAV..UW[s4047]Im
201113-09:29:58,85 nipype.interface INFO:
stderr 2020-11-13T09:29:58.085197:++ Output dataset ./uni.nii.gz
201113-09:29:58,85 nipype.interface INFO:
stderr 2020-11-13T09:29:58.085486:++ ===== Elapsed = 74.1 sec
201113-09:29:58,295 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:29:58,296 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass".
201113-09:29:58,302 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni.nii.gz
201113-09:29:58,551 nipype.interface INFO:
stderr 2020-11-13T09:29:58.551183:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:29:58,551 nipype.interface INFO:
stderr 2020-11-13T09:29:58.551846:++ Authored by: Emperor Zhark
201113-09:29:58,554 nipype.interface INFO:
stderr 2020-11-13T09:29:58.554344:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni.nii.gz
201113-09:29:58,559 nipype.interface INFO:
stderr 2020-11-13T09:29:58.559616:++ Forming automask
201113-09:29:58,561 nipype.interface INFO:
stderr 2020-11-13T09:29:58.561561: + Fixed clip level = 407.086273
201113-09:29:58,565 nipype.interface INFO:
stderr 2020-11-13T09:29:58.565952: + Used gradual clip level = 371.181305 .. 483.077698
201113-09:29:58,566 nipype.interface INFO:
stderr 2020-11-13T09:29:58.566205: + Number voxels above clip level = 30011
201113-09:29:58,566 nipype.interface INFO:
stderr 2020-11-13T09:29:58.566399: + Clustering voxels ...
201113-09:29:58,567 nipype.interface INFO:
stderr 2020-11-13T09:29:58.567969: + Largest cluster has 30005 voxels
201113-09:29:58,569 nipype.interface INFO:
stderr 2020-11-13T09:29:58.569291: + Clustering voxels ...
201113-09:29:58,570 nipype.interface INFO:
stderr 2020-11-13T09:29:58.570384: + Largest cluster has 29631 voxels
201113-09:29:58,573 nipype.interface INFO:
stderr 2020-11-13T09:29:58.573975: + Filled 592 voxels in small holes; now have 30223 voxels
201113-09:29:58,577 nipype.interface INFO:
stderr 2020-11-13T09:29:58.577204: + Filled 4 voxels in large holes; now have 30227 voxels
201113-09:29:58,578 nipype.interface INFO:
stderr 2020-11-13T09:29:58.578446: + Clustering voxels ...
201113-09:29:58,579 nipype.interface INFO:
stderr 2020-11-13T09:29:58.579521: + Largest cluster has 30227 voxels
201113-09:29:58,579 nipype.interface INFO:
stderr 2020-11-13T09:29:58.579750: + Clustering non-brain voxels ...
201113-09:29:58,579 nipype.interface INFO:
stderr 2020-11-13T09:29:58.579891: + Clustering voxels ...
201113-09:29:58,582 nipype.interface INFO:
stderr 2020-11-13T09:29:58.582798: + Largest cluster has 109021 voxels
201113-09:29:58,583 nipype.interface INFO:
stderr 2020-11-13T09:29:58.583125: + Mask now has 30243 voxels
201113-09:29:58,583 nipype.interface INFO:
stderr 2020-11-13T09:29:58.583277:++ Dilating automask
201113-09:29:58,591 nipype.interface INFO:
stderr 2020-11-13T09:29:58.591062: + Clustering voxels ...
201113-09:29:58,593 nipype.interface INFO:
stderr 2020-11-13T09:29:58.593640: + Largest cluster has 102983 voxels
201113-09:29:58,594 nipype.interface INFO:
stderr 2020-11-13T09:29:58.594033:++ 36281 voxels in the mask [out of 139264: 26.05%]
201113-09:29:58,594 nipype.interface INFO:
stderr 2020-11-13T09:29:58.594202:++ first 9 x-planes are zero [from R]
201113-09:29:58,594 nipype.interface INFO:
stderr 2020-11-13T09:29:58.594362:++ last 9 x-planes are zero [from L]
201113-09:29:58,594 nipype.interface INFO:
stderr 2020-11-13T09:29:58.594515:++ first 5 y-planes are zero [from P]
201113-09:29:58,594 nipype.interface INFO:
stderr 2020-11-13T09:29:58.594659:++ last 4 y-planes are zero [from A]
201113-09:29:58,594 nipype.interface INFO:
stderr 2020-11-13T09:29:58.594793:++ first 0 z-planes are zero [from I]
201113-09:29:58,594 nipype.interface INFO:
stderr 2020-11-13T09:29:58.594933:++ last 2 z-planes are zero [from S]
201113-09:29:58,599 nipype.interface INFO:
stderr 2020-11-13T09:29:58.599523:++ Output dataset ./uni_mask.nii.gz
201113-09:29:58,599 nipype.interface INFO:
stderr 2020-11-13T09:29:58.599735:++ applying mask to original data
201113-09:29:58,600 nipype.interface INFO:
stderr 2020-11-13T09:29:58.600593:++ Writing masked data
201113-09:29:58,614 nipype.interface INFO:
stderr 2020-11-13T09:29:58.614602:++ Output dataset ./uni_masked.nii.gz
201113-09:29:58,614 nipype.interface INFO:
stderr 2020-11-13T09:29:58.614911:++ CPU time = 0.000000 sec
201113-09:29:58,801 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:29:58,802 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks".
201113-09:29:58,809 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:29:59,247 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:29:59,249 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201113-09:29:59,253 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-09:29:59,480 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201113-09:29:59,482 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201113-09:29:59,487 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:29:59,733 nipype.interface INFO:
stderr 2020-11-13T09:29:59.733906:++ no -frac option: defaulting to -union
201113-09:29:59,734 nipype.interface INFO:
stderr 2020-11-13T09:29:59.734237:++ processing 1 input dataset(s), NN=2...
201113-09:29:59,734 nipype.interface INFO:
stderr 2020-11-13T09:29:59.734407:++ padding all datasets by 0 (for dilations)
201113-09:29:59,738 nipype.interface INFO:
stderr 2020-11-13T09:29:59.738719:++ frac 0 over 1 volumes gives min count 0
201113-09:29:59,739 nipype.interface INFO:
stderr 2020-11-13T09:29:59.739121:++ voxel limits: 0 clipped, 36211 survived, 103053 were zero
201113-09:29:59,739 nipype.interface INFO:
stderr 2020-11-13T09:29:59.739293:++ writing result sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201113-09:29:59,743 nipype.interface INFO:
stderr 2020-11-13T09:29:59.743241:++ Output dataset ./sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201113-09:29:59,930 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201113-09:29:59,931 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/sinker_0_functional_brain_mask".
201113-09:29:59,939 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:30:00,168 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_functional_brain_mask".
201113-09:30:00,170 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/functional_brain_mask_derivative_0".
201113-09:30:00,175 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201113-09:30:00,389 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201113-09:30:00,395 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:30:00,934 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201113-09:30:00,950 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.functional_brain_mask_derivative_0".
201113-09:30:00,951 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_extract_brain".
201113-09:30:00,960 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:30:01,208 nipype.interface INFO:
stderr 2020-11-13T09:30:01.208851:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:30:01,209 nipype.interface INFO:
stderr 2020-11-13T09:30:01.209210:++ Authored by: A cast of thousands
201113-09:30:04,302 nipype.interface INFO:
stderr 2020-11-13T09:30:04.302623:++ Output dataset ./sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:30:04,522 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:30:04,523 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize".
201113-09:30:04,530 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_extract_brain/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201113-09:30:06,926 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:30:06,928 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201113-09:30:06,935 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:30:07,859 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201113-09:30:07,861 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201113-09:30:07,866 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:30:08,121 nipype.interface INFO:
stderr 2020-11-13T09:30:08.121775:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:30:08,122 nipype.interface INFO:
stderr 2020-11-13T09:30:08.122107:++ Authored by: KR Hammett & RW Cox
201113-09:30:08,697 nipype.interface INFO:
stderr 2020-11-13T09:30:08.697199:++ Output dataset ./sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:30:08,885 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.functional_mean".
201113-09:30:08,886 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-128_ses-2/qc_snr_0/_scan_tgng_run-3/std_dev".
201113-09:30:08,893 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/qc_snr_0/_scan_tgng_run-3/std_dev/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:30:09,136 nipype.interface INFO:
stderr 2020-11-13T09:30:09.136260:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:30:09,136 nipype.interface INFO:
stderr 2020-11-13T09:30:09.136705:++ Authored by: KR Hammett & RW Cox
201113-09:30:09,654 nipype.interface INFO:
stderr 2020-11-13T09:30:09.654315:++ Output dataset ./sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:30:09,873 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.qc_snr_0.std_dev".
201113-09:30:09,874 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/sinker_0_functional_preprocessed".
201113-09:30:09,881 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:30:10,108 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed".
201113-09:30:10,110 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mask_normalize".
201113-09:30:10,116 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mask_normalize/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:30:11,187 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:30:11,188 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/sinker_0_functional_preprocessed_mask".
201113-09:30:11,195 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:30:11,428 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed_mask".
201113-09:30:11,430 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean".
201113-09:30:11,435 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean/sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:30:11,684 nipype.interface INFO:
stderr 2020-11-13T09:30:11.684401:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:30:11,684 nipype.interface INFO:
stderr 2020-11-13T09:30:11.684737:++ Authored by: KR Hammett & RW Cox
201113-09:30:12,237 nipype.interface INFO:
stderr 2020-11-13T09:30:12.237609:++ Output dataset ./sub-128_ses-2_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201113-09:30:12,432 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:30:12,434 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/sinker_0_mean_functional".
201113-09:30:12,442 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:30:12,679 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_mean_functional".
201113-09:30:12,681 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/norm_motion_params".
201113-09:30:12,688 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:30:12,925 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:30:12,926 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/sinker_0_slice_time_corrected".
201113-09:30:12,934 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:30:13,170 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_slice_time_corrected".
201113-09:30:13,172 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-3/sinker_0_raw_functional".
201113-09:30:13,180 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:30:13,525 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_raw_functional".
201113-09:30:13,526 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_tgng_run-3/check_func_scan".
201113-09:30:13,568 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201113-09:30:13,804 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.check_func_scan".
201113-09:30:13,815 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_tgng_run-2/select_scan_params".
201113-09:30:13,848 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:30:14,84 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.select_scan_params".
201113-09:30:14,94 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_tgng_run-2/s3_scan_params".
201113-09:30:14,103 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:30:14,333 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.s3_scan_params".
201113-09:30:14,336 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/scan_params_0".
201113-09:30:14,346 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-09:30:14,577 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.scan_params_0".
201113-09:30:14,580 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_tgng_run-2/selectrest".
201113-09:30:14,613 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-09:30:14,844 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.selectrest".
201113-09:30:14,854 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_tgng_run-2/check_for_s3".
201113-09:30:14,859 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-09:30:15,127 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.check_for_s3".
201113-09:30:15,129 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-128_ses-2/edit_func_0/_scan_tgng_run-2/func_get_idx".
201113-09:30:15,134 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-09:30:15,368 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.edit_func_0.func_get_idx".
201113-09:30:15,369 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-128_ses-2/edit_func_0/_scan_tgng_run-2/func_drop_trs".
201113-09:30:15,376 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-128/ses-2/func/sub-128_ses-2_task-tgng_run-2_bold.nii.gz[0..129] -expr "a" -prefix sub-128_ses-2_task-tgng_run-2_bold_calc.nii.gz
201113-09:30:15,630 nipype.interface INFO:
stderr 2020-11-13T09:30:15.630033:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:30:15,630 nipype.interface INFO:
stderr 2020-11-13T09:30:15.630427:++ Authored by: A cast of thousands
201113-09:30:21,258 nipype.interface INFO:
stderr 2020-11-13T09:30:21.258182:++ Output dataset ./sub-128_ses-2_task-tgng_run-2_bold_calc.nii.gz
201113-09:30:21,472 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.edit_func_0.func_drop_trs".
201113-09:30:21,474 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique".
201113-09:30:21,517 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-128_ses-2_task-tgng_run-2_bold_calc.nii.gz
201113-09:30:21,765 nipype.interface INFO:
stderr 2020-11-13T09:30:21.765807:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:30:21,766 nipype.interface INFO:
stderr 2020-11-13T09:30:21.766153:++ Authored by: RW Cox
201113-09:30:21,778 nipype.interface INFO:
stderr 2020-11-13T09:30:21.778286:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-128_ses-2_task-tgng_run-2_bold_calc.nii.gz
201113-09:30:21,778 nipype.interface INFO:
stderr 2020-11-13T09:30:21.778890: + deoblique
201113-09:30:21,779 nipype.interface INFO:
stderr 2020-11-13T09:30:21.779080: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-128_ses-2_task-tgng_run-2_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-128_ses-2_task-tgng_run-2_bold_calc.nii.gz in NIFTI storage)
201113-09:30:25,601 nipype.interface INFO:
stderr 2020-11-13T09:30:25.601757:++ 3drefit processed 1 datasets
201113-09:30:25,815 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:30:25,816 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient".
201113-09:30:25,823 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-2_task-tgng_run-2_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-128_ses-2_task-tgng_run-2_bold_calc.nii.gz
201113-09:30:30,316 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:30:30,317 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI".
201113-09:30:30,324 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-2_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-128_ses-2_task-tgng_run-2_bold_calc_resample.nii.gz
201113-09:30:30,581 nipype.interface INFO:
stderr 2020-11-13T09:30:30.581055:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:30:30,581 nipype.interface INFO:
stderr 2020-11-13T09:30:30.581627:++ Authored by: KR Hammett & RW Cox
201113-09:30:31,52 nipype.interface INFO:
stderr 2020-11-13T09:30:31.052650:++ Output dataset ./sub-128_ses-2_task-tgng_run-2_bold_calc_resample_tstat.nii.gz
201113-09:30:31,242 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:30:31,244 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref".
201113-09:30:31,250 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-2_task-tgng_run-2_bold_calc_resample.1D -1Dmatrix_save sub-128_ses-2_task-tgng_run-2_bold_calc_resample.aff12.1D -prefix sub-128_ses-2_task-tgng_run-2_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-128_ses-2_task-tgng_run-2_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-2_task-tgng_run-2_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref/sub-128_ses-2_task-tgng_run-2_bold_calc_resample.nii.gz
201113-09:30:31,501 nipype.interface INFO:
stderr 2020-11-13T09:30:31.501323:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:30:31,501 nipype.interface INFO:
stderr 2020-11-13T09:30:31.501653:++ Authored by: RW Cox
201113-09:30:31,511 nipype.interface INFO:
stderr 2020-11-13T09:30:31.511660:++ Coarse del was 10, replaced with 3
201113-09:32:18,879 nipype.interface INFO:
stderr 2020-11-13T09:32:18.879799:++ Max displacement in automask = 8.20 (mm) at sub-brick 97
201113-09:32:18,880 nipype.interface INFO:
stderr 2020-11-13T09:32:18.880277:++ Max delta displ in automask = 5.59 (mm) at sub-brick 98
201113-09:32:22,640 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:32:22,642 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion".
201113-09:32:22,647 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-2_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-128_ses-2_task-tgng_run-2_bold_calc_resample_volreg.nii.gz
201113-09:32:22,900 nipype.interface INFO:
stderr 2020-11-13T09:32:22.900910:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:32:22,901 nipype.interface INFO:
stderr 2020-11-13T09:32:22.901229:++ Authored by: KR Hammett & RW Cox
201113-09:32:23,370 nipype.interface INFO:
stderr 2020-11-13T09:32:23.370917:++ Output dataset ./sub-128_ses-2_task-tgng_run-2_bold_calc_resample_volreg_tstat.nii.gz
201113-09:32:23,561 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:32:23,563 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt".
201113-09:32:23,570 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-128_ses-2_task-tgng_run-2_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-128_ses-2_task-tgng_run-2_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:32:46,960 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:32:46,969 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calculate_FDJ".
201113-09:32:46,975 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201113-09:32:47,205 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201113-09:32:47,206 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/sinker_0_frame_wise_displacement_jenkinson".
201113-09:32:47,213 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:32:47,440 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201113-09:32:47,441 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/sinker_0_max_displacement".
201113-09:32:47,450 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:32:47,680 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_max_displacement".
201113-09:32:47,683 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/sinker_0_coordinate_transformation".
201113-09:32:47,701 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:32:47,966 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_coordinate_transformation".
201113-09:32:47,978 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull".
201113-09:32:47,985 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf.nii.gz
201113-09:32:48,241 nipype.interface INFO:
stderr 2020-11-13T09:32:48.241662:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:32:48,242 nipype.interface INFO:
stderr 2020-11-13T09:32:48.242006:++ Authored by: KR Hammett & RW Cox
201113-09:32:48,744 nipype.interface INFO:
stderr 2020-11-13T09:32:48.744886:++ Output dataset ./sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat.nii.gz
201113-09:32:48,933 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:32:48,934 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass".
201113-09:32:48,940 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:32:50,768 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:32:50,770 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate".
201113-09:32:50,776 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:32:51,477 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:32:51,479 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask".
201113-09:32:51,485 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask/sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:32:51,942 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:32:51,944 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize".
201113-09:32:51,949 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize/sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:32:52,201 nipype.interface INFO:
stderr 2020-11-13T09:32:52.201631:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:34:06,871 nipype.interface INFO:
stderr 2020-11-13T09:34:06.871132: + Pre-processing: IAV..UW[s4264]Im
201113-09:34:06,886 nipype.interface INFO:
stderr 2020-11-13T09:34:06.886840:++ Output dataset ./uni.nii.gz
201113-09:34:06,887 nipype.interface INFO:
stderr 2020-11-13T09:34:06.887119:++ ===== Elapsed = 74.7 sec
201113-09:34:07,100 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:34:07,101 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass".
201113-09:34:07,107 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201113-09:34:07,363 nipype.interface INFO:
stderr 2020-11-13T09:34:07.363603:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:34:07,363 nipype.interface INFO:
stderr 2020-11-13T09:34:07.363928:++ Authored by: Emperor Zhark
201113-09:34:07,365 nipype.interface INFO:
stderr 2020-11-13T09:34:07.365948:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201113-09:34:07,370 nipype.interface INFO:
stderr 2020-11-13T09:34:07.370233:++ Forming automask
201113-09:34:07,371 nipype.interface INFO:
stderr 2020-11-13T09:34:07.371837: + Fixed clip level = 414.675507
201113-09:34:07,375 nipype.interface INFO:
stderr 2020-11-13T09:34:07.375124: + Used gradual clip level = 376.031982 .. 490.684357
201113-09:34:07,375 nipype.interface INFO:
stderr 2020-11-13T09:34:07.375336: + Number voxels above clip level = 30032
201113-09:34:07,375 nipype.interface INFO:
stderr 2020-11-13T09:34:07.375504: + Clustering voxels ...
201113-09:34:07,376 nipype.interface INFO:
stderr 2020-11-13T09:34:07.376613: + Largest cluster has 30031 voxels
201113-09:34:07,377 nipype.interface INFO:
stderr 2020-11-13T09:34:07.377943: + Clustering voxels ...
201113-09:34:07,379 nipype.interface INFO:
stderr 2020-11-13T09:34:07.379038: + Largest cluster has 29670 voxels
201113-09:34:07,382 nipype.interface INFO:
stderr 2020-11-13T09:34:07.382406: + Filled 537 voxels in small holes; now have 30207 voxels
201113-09:34:07,385 nipype.interface INFO:
stderr 2020-11-13T09:34:07.385695: + Filled 3 voxels in large holes; now have 30210 voxels
201113-09:34:07,386 nipype.interface INFO:
stderr 2020-11-13T09:34:07.386955: + Clustering voxels ...
201113-09:34:07,388 nipype.interface INFO:
stderr 2020-11-13T09:34:07.388036: + Largest cluster has 30209 voxels
201113-09:34:07,388 nipype.interface INFO:
stderr 2020-11-13T09:34:07.388267: + Clustering non-brain voxels ...
201113-09:34:07,388 nipype.interface INFO:
stderr 2020-11-13T09:34:07.388424: + Clustering voxels ...
201113-09:34:07,391 nipype.interface INFO:
stderr 2020-11-13T09:34:07.391321: + Largest cluster has 109034 voxels
201113-09:34:07,391 nipype.interface INFO:
stderr 2020-11-13T09:34:07.391658: + Mask now has 30230 voxels
201113-09:34:07,391 nipype.interface INFO:
stderr 2020-11-13T09:34:07.391818:++ Dilating automask
201113-09:34:07,400 nipype.interface INFO:
stderr 2020-11-13T09:34:07.400153: + Clustering voxels ...
201113-09:34:07,402 nipype.interface INFO:
stderr 2020-11-13T09:34:07.402571: + Largest cluster has 102971 voxels
201113-09:34:07,402 nipype.interface INFO:
stderr 2020-11-13T09:34:07.402906:++ 36293 voxels in the mask [out of 139264: 26.06%]
201113-09:34:07,403 nipype.interface INFO:
stderr 2020-11-13T09:34:07.403080:++ first 9 x-planes are zero [from R]
201113-09:34:07,403 nipype.interface INFO:
stderr 2020-11-13T09:34:07.403246:++ last 9 x-planes are zero [from L]
201113-09:34:07,403 nipype.interface INFO:
stderr 2020-11-13T09:34:07.403399:++ first 5 y-planes are zero [from P]
201113-09:34:07,403 nipype.interface INFO:
stderr 2020-11-13T09:34:07.403543:++ last 4 y-planes are zero [from A]
201113-09:34:07,403 nipype.interface INFO:
stderr 2020-11-13T09:34:07.403677:++ first 0 z-planes are zero [from I]
201113-09:34:07,403 nipype.interface INFO:
stderr 2020-11-13T09:34:07.403819:++ last 2 z-planes are zero [from S]
201113-09:34:07,408 nipype.interface INFO:
stderr 2020-11-13T09:34:07.408104:++ Output dataset ./uni_mask.nii.gz
201113-09:34:07,408 nipype.interface INFO:
stderr 2020-11-13T09:34:07.408317:++ applying mask to original data
201113-09:34:07,409 nipype.interface INFO:
stderr 2020-11-13T09:34:07.409181:++ Writing masked data
201113-09:34:07,422 nipype.interface INFO:
stderr 2020-11-13T09:34:07.422754:++ Output dataset ./uni_masked.nii.gz
201113-09:34:07,423 nipype.interface INFO:
stderr 2020-11-13T09:34:07.423062:++ CPU time = 0.000000 sec
201113-09:34:07,611 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:34:07,613 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks".
201113-09:34:07,620 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:34:08,56 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:34:08,57 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/cal_DVARS".
201113-09:34:08,64 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201113-09:34:08,744 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201113-09:34:08,745 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain".
201113-09:34:08,752 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-09:34:08,996 nipype.interface INFO:
stderr 2020-11-13T09:34:08.996056:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:34:08,996 nipype.interface INFO:
stderr 2020-11-13T09:34:08.996395:++ Authored by: A cast of thousands
201113-09:34:11,761 nipype.interface INFO:
stderr 2020-11-13T09:34:11.761078:++ Output dataset ./sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-09:34:11,952 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:34:11,954 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize".
201113-09:34:11,960 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain/sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201113-09:34:14,183 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:34:14,184 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize".
201113-09:34:14,190 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize/sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:34:15,243 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:34:15,244 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean".
201113-09:34:15,250 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-09:34:15,504 nipype.interface INFO:
stderr 2020-11-13T09:34:15.504309:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:34:15,504 nipype.interface INFO:
stderr 2020-11-13T09:34:15.504932:++ Authored by: KR Hammett & RW Cox
201113-09:34:15,810 nipype.interface INFO:
stderr 2020-11-13T09:34:15.810013:++ Output dataset ./sub-128_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz
201113-09:34:16,1 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:34:16,2 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/norm_motion_params".
201113-09:34:16,8 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:34:16,243 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:34:16,244 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-2/qc_motion_0/_scan_tgng_run-2/motion_plot".
201113-09:34:16,249 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201113-09:34:16,681 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.qc_motion_0.motion_plot".
201113-09:34:16,682 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/sinker_0_qc___movement_trans_plot".
201113-09:34:16,688 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:34:16,900 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc___movement_trans_plot/_scan_tgng_run-2/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc/movement_trans_plot/_scan_tgng_run-2/motion_trans_plot.png
201113-09:34:16,917 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_trans_plot".
201113-09:34:16,919 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/sinker_0_qc___movement_rot_plot".
201113-09:34:16,925 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:34:17,139 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc___movement_rot_plot/_scan_tgng_run-2/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc/movement_rot_plot/_scan_tgng_run-2/motion_rot_plot.png
201113-09:34:17,158 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_rot_plot".
201113-09:34:17,160 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calc_motion_parameters".
201113-09:34:17,167 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:34:17,403 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201113-09:34:17,404 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/sinker_0_motion_params".
201113-09:34:17,410 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:34:17,642 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_motion_params".
201113-09:34:17,644 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calculate_FD".
201113-09:34:17,649 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201113-09:34:17,883 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201113-09:34:17,884 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/sinker_0_frame_wise_displacement_power".
201113-09:34:17,891 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:34:18,121 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_power".
201113-09:34:18,123 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calc_power_parameters".
201113-09:34:18,128 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:34:18,364 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201113-09:34:18,365 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/sinker_0_power_params".
201113-09:34:18,373 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:34:18,603 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_power_params".
201113-09:34:18,605 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/sinker_0_movement_parameters".
201113-09:34:18,611 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:34:18,841 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_movement_parameters".
201113-09:34:18,843 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/func_despiked_0".
201113-09:34:18,849 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-128_ses-2_task-tgng_run-2_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/func_despiked_0/sub-128_ses-2_task-tgng_run-2_bold_calc.nii.gz
201113-09:34:19,102 nipype.interface INFO:
stderr 2020-11-13T09:34:19.101979:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:34:19,102 nipype.interface INFO:
stderr 2020-11-13T09:34:19.102361:++ Authored by: RW Cox
201113-09:34:19,104 nipype.interface INFO:
stderr 2020-11-13T09:34:19.104398:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:34:19,104 nipype.interface INFO:
stderr 2020-11-13T09:34:19.104398: such as /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/func_despiked_0/sub-128_ses-2_task-tgng_run-2_bold_calc.nii.gz,
201113-09:34:19,104 nipype.interface INFO:
stderr 2020-11-13T09:34:19.104398: or viewing/combining it with volumes of differing obliquity,
201113-09:34:19,104 nipype.interface INFO:
stderr 2020-11-13T09:34:19.104398: you should consider running:
201113-09:34:19,104 nipype.interface INFO:
stderr 2020-11-13T09:34:19.104398: 3dWarp -deoblique
201113-09:34:19,104 nipype.interface INFO:
stderr 2020-11-13T09:34:19.104398: on this and other oblique datasets in the same session.
201113-09:34:19,105 nipype.interface INFO:
stderr 2020-11-13T09:34:19.104398: See 3dWarp -help for details.
201113-09:34:19,105 nipype.interface INFO:
stderr 2020-11-13T09:34:19.105204:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/func_despiked_0/sub-128_ses-2_task-tgng_run-2_bold_calc.nii.gz is 19.900011 degrees from plumb.
201113-09:34:19,105 nipype.interface INFO:
stderr 2020-11-13T09:34:19.105390:++ Input dataset is in short format, but output will be in float format
201113-09:34:19,105 nipype.interface INFO:
stderr 2020-11-13T09:34:19.105554:++ ignoring first 0 time points, using last 130
201113-09:34:19,105 nipype.interface INFO:
stderr 2020-11-13T09:34:19.105718:++ using 130 time points => -corder 4
201113-09:34:19,105 nipype.interface INFO:
stderr 2020-11-13T09:34:19.105876:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/func_despiked_0/sub-128_ses-2_task-tgng_run-2_bold_calc.nii.gz
201113-09:34:19,570 nipype.interface INFO:
stderr 2020-11-13T09:34:19.570287:++ 33471 voxels in the automask [out of 139264 in dataset]
201113-09:34:19,575 nipype.interface INFO:
stderr 2020-11-13T09:34:19.575824:++ 57826 voxels in the dilated automask [out of 139264 in dataset]
201113-09:34:19,587 nipype.interface INFO:
stderr 2020-11-13T09:34:19.587242:++ Procesing time series with OLD model fit algorithm
201113-09:34:19,587 nipype.interface INFO:
stderr 2020-11-13T09:34:19.587442:++ smash edit thresholds: 3.1 .. 5.0 MADs
201113-09:34:19,587 nipype.interface INFO:
stderr 2020-11-13T09:34:19.587606: + [ 3.457% .. 0.072% of normal distribution]
201113-09:34:19,587 nipype.interface INFO:
stderr 2020-11-13T09:34:19.587759: + [ 8.839% .. 3.125% of Laplace distribution]
201113-09:34:19,587 nipype.interface INFO:
stderr 2020-11-13T09:34:19.587916:++ start OpenMP thread #0
201113-09:34:25,769 nipype.interface INFO:
stderr 2020-11-13T09:34:25.768995:..........................
201113-09:34:25,769 nipype.interface INFO:
stderr 2020-11-13T09:34:25.769493:++ Elapsed despike time = 6s 181ms
201113-09:34:25,769 nipype.interface INFO:
stderr 2020-11-13T09:34:25.769645:
201113-09:34:25,770 nipype.interface INFO:
stderr 2020-11-13T09:34:25.770477:++ FINAL: 7517380 data points, 643794 edits [8.564%], 233694 big edits [3.109%]
201113-09:34:29,702 nipype.interface INFO:
stderr 2020-11-13T09:34:29.702285:++ Output dataset ./sub-128_ses-2_task-tgng_run-2_bold_calc_despike.nii.gz
201113-09:34:29,932 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_despiked_0".
201113-09:34:29,933 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing".
201113-09:34:29,942 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:34:29,943 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing/sub-128_ses-2_task-tgng_run-2_bold_calc_despike.nii.gz
201113-09:34:30,153 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:34:30,188 nipype.interface INFO:
stderr 2020-11-13T09:34:30.188251:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:34:30,190 nipype.interface INFO:
stderr 2020-11-13T09:34:30.190641:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:34:30,190 nipype.interface INFO:
stderr 2020-11-13T09:34:30.190641: such as /outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing/sub-128_ses-2_task-tgng_run-2_bold_calc_despike.nii.gz,
201113-09:34:30,190 nipype.interface INFO:
stderr 2020-11-13T09:34:30.190641: or viewing/combining it with volumes of differing obliquity,
201113-09:34:30,190 nipype.interface INFO:
stderr 2020-11-13T09:34:30.190641: you should consider running:
201113-09:34:30,191 nipype.interface INFO:
stderr 2020-11-13T09:34:30.190641: 3dWarp -deoblique
201113-09:34:30,191 nipype.interface INFO:
stderr 2020-11-13T09:34:30.190641: on this and other oblique datasets in the same session.
201113-09:34:30,191 nipype.interface INFO:
stderr 2020-11-13T09:34:30.190641: See 3dWarp -help for details.
201113-09:34:30,191 nipype.interface INFO:
stderr 2020-11-13T09:34:30.191337:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing/sub-128_ses-2_task-tgng_run-2_bold_calc_despike.nii.gz is 19.900011 degrees from plumb.
201113-09:34:34,486 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_slice_timing_correction_0.slice_timing".
201113-09:34:34,488 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique".
201113-09:34:34,545 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift.nii.gz
201113-09:34:34,797 nipype.interface INFO:
stderr 2020-11-13T09:34:34.797856:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:34:34,798 nipype.interface INFO:
stderr 2020-11-13T09:34:34.798230:++ Authored by: RW Cox
201113-09:34:34,800 nipype.interface INFO:
stderr 2020-11-13T09:34:34.800250:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift.nii.gz
201113-09:34:34,800 nipype.interface INFO:
stderr 2020-11-13T09:34:34.800881: + deoblique
201113-09:34:34,801 nipype.interface INFO:
stderr 2020-11-13T09:34:34.801067: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201113-09:34:36,953 nipype.interface INFO:
stderr 2020-11-13T09:34:36.953291:++ 3drefit processed 1 datasets
201113-09:34:37,166 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:34:37,167 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient".
201113-09:34:37,174 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift.nii.gz
201113-09:34:39,936 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:34:39,938 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI".
201113-09:34:39,945 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz
201113-09:34:40,193 nipype.interface INFO:
stderr 2020-11-13T09:34:40.193441:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:34:40,193 nipype.interface INFO:
stderr 2020-11-13T09:34:40.193769:++ Authored by: KR Hammett & RW Cox
201113-09:34:40,792 nipype.interface INFO:
stderr 2020-11-13T09:34:40.792763:++ Output dataset ./sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz
201113-09:34:40,980 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:34:40,981 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref".
201113-09:34:40,988 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz
201113-09:34:41,234 nipype.interface INFO:
stderr 2020-11-13T09:34:41.234343:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:34:41,234 nipype.interface INFO:
stderr 2020-11-13T09:34:41.234778:++ Authored by: RW Cox
201113-09:34:41,242 nipype.interface INFO:
stderr 2020-11-13T09:34:41.242744:++ Coarse del was 10, replaced with 3
201113-09:36:28,269 nipype.interface INFO:
stderr 2020-11-13T09:36:28.269098:++ Max displacement in automask = 1.56 (mm) at sub-brick 124
201113-09:36:28,269 nipype.interface INFO:
stderr 2020-11-13T09:36:28.269805:++ Max delta displ in automask = 0.93 (mm) at sub-brick 95
201113-09:36:33,81 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:36:33,83 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion".
201113-09:36:33,89 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz
201113-09:36:33,343 nipype.interface INFO:
stderr 2020-11-13T09:36:33.343042:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:36:33,343 nipype.interface INFO:
stderr 2020-11-13T09:36:33.343478:++ Authored by: KR Hammett & RW Cox
201113-09:36:34,134 nipype.interface INFO:
stderr 2020-11-13T09:36:34.133949:++ Output dataset ./sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201113-09:36:34,332 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:36:34,334 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt".
201113-09:36:34,341 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:36:55,826 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:36:55,834 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/sinker_0_motion_correct".
201113-09:36:55,841 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:36:56,67 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_motion_correct".
201113-09:36:56,69 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull".
201113-09:36:56,77 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz
201113-09:36:56,333 nipype.interface INFO:
stderr 2020-11-13T09:36:56.333825:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:36:56,334 nipype.interface INFO:
stderr 2020-11-13T09:36:56.334296:++ Authored by: KR Hammett & RW Cox
201113-09:36:56,969 nipype.interface INFO:
stderr 2020-11-13T09:36:56.969780:++ Output dataset ./sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201113-09:36:57,162 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:36:57,164 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass".
201113-09:36:57,169 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:36:59,47 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:36:59,49 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate".
201113-09:36:59,54 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:36:59,719 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:36:59,721 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask".
201113-09:36:59,728 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:37:00,182 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:37:00,184 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize".
201113-09:37:00,190 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:37:00,440 nipype.interface INFO:
stderr 2020-11-13T09:37:00.440269:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:38:15,178 nipype.interface INFO:
stderr 2020-11-13T09:38:15.178190: + Pre-processing: IAV..UW[s4238]Im
201113-09:38:15,192 nipype.interface INFO:
stderr 2020-11-13T09:38:15.192289:++ Output dataset ./uni.nii.gz
201113-09:38:15,192 nipype.interface INFO:
stderr 2020-11-13T09:38:15.192580:++ ===== Elapsed = 74.8 sec
201113-09:38:15,404 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:38:15,405 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass".
201113-09:38:15,411 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201113-09:38:15,669 nipype.interface INFO:
stderr 2020-11-13T09:38:15.669694:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:38:15,670 nipype.interface INFO:
stderr 2020-11-13T09:38:15.670053:++ Authored by: Emperor Zhark
201113-09:38:15,672 nipype.interface INFO:
stderr 2020-11-13T09:38:15.672457:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201113-09:38:15,678 nipype.interface INFO:
stderr 2020-11-13T09:38:15.678607:++ Forming automask
201113-09:38:15,680 nipype.interface INFO:
stderr 2020-11-13T09:38:15.680013: + Fixed clip level = 413.780121
201113-09:38:15,683 nipype.interface INFO:
stderr 2020-11-13T09:38:15.683582: + Used gradual clip level = 374.627930 .. 491.215332
201113-09:38:15,683 nipype.interface INFO:
stderr 2020-11-13T09:38:15.683810: + Number voxels above clip level = 30038
201113-09:38:15,684 nipype.interface INFO:
stderr 2020-11-13T09:38:15.683985: + Clustering voxels ...
201113-09:38:15,685 nipype.interface INFO:
stderr 2020-11-13T09:38:15.685099: + Largest cluster has 30037 voxels
201113-09:38:15,686 nipype.interface INFO:
stderr 2020-11-13T09:38:15.686691: + Clustering voxels ...
201113-09:38:15,687 nipype.interface INFO:
stderr 2020-11-13T09:38:15.687811: + Largest cluster has 29678 voxels
201113-09:38:15,691 nipype.interface INFO:
stderr 2020-11-13T09:38:15.691215: + Filled 547 voxels in small holes; now have 30225 voxels
201113-09:38:15,694 nipype.interface INFO:
stderr 2020-11-13T09:38:15.694469: + Filled 3 voxels in large holes; now have 30228 voxels
201113-09:38:15,695 nipype.interface INFO:
stderr 2020-11-13T09:38:15.695736: + Clustering voxels ...
201113-09:38:15,696 nipype.interface INFO:
stderr 2020-11-13T09:38:15.696845: + Largest cluster has 30227 voxels
201113-09:38:15,697 nipype.interface INFO:
stderr 2020-11-13T09:38:15.697094: + Clustering non-brain voxels ...
201113-09:38:15,697 nipype.interface INFO:
stderr 2020-11-13T09:38:15.697254: + Clustering voxels ...
201113-09:38:15,700 nipype.interface INFO:
stderr 2020-11-13T09:38:15.700228: + Largest cluster has 109016 voxels
201113-09:38:15,700 nipype.interface INFO:
stderr 2020-11-13T09:38:15.700577: + Mask now has 30248 voxels
201113-09:38:15,700 nipype.interface INFO:
stderr 2020-11-13T09:38:15.700745:++ Dilating automask
201113-09:38:15,708 nipype.interface INFO:
stderr 2020-11-13T09:38:15.708617: + Clustering voxels ...
201113-09:38:15,711 nipype.interface INFO:
stderr 2020-11-13T09:38:15.711304: + Largest cluster has 102950 voxels
201113-09:38:15,711 nipype.interface INFO:
stderr 2020-11-13T09:38:15.711661:++ 36314 voxels in the mask [out of 139264: 26.08%]
201113-09:38:15,711 nipype.interface INFO:
stderr 2020-11-13T09:38:15.711840:++ first 9 x-planes are zero [from R]
201113-09:38:15,712 nipype.interface INFO:
stderr 2020-11-13T09:38:15.712012:++ last 9 x-planes are zero [from L]
201113-09:38:15,712 nipype.interface INFO:
stderr 2020-11-13T09:38:15.712170:++ first 5 y-planes are zero [from P]
201113-09:38:15,712 nipype.interface INFO:
stderr 2020-11-13T09:38:15.712322:++ last 4 y-planes are zero [from A]
201113-09:38:15,712 nipype.interface INFO:
stderr 2020-11-13T09:38:15.712475:++ first 0 z-planes are zero [from I]
201113-09:38:15,712 nipype.interface INFO:
stderr 2020-11-13T09:38:15.712623:++ last 2 z-planes are zero [from S]
201113-09:38:15,716 nipype.interface INFO:
stderr 2020-11-13T09:38:15.716656:++ Output dataset ./uni_mask.nii.gz
201113-09:38:15,716 nipype.interface INFO:
stderr 2020-11-13T09:38:15.716843:++ applying mask to original data
201113-09:38:15,717 nipype.interface INFO:
stderr 2020-11-13T09:38:15.717763:++ Writing masked data
201113-09:38:15,731 nipype.interface INFO:
stderr 2020-11-13T09:38:15.731952:++ Output dataset ./uni_masked.nii.gz
201113-09:38:15,732 nipype.interface INFO:
stderr 2020-11-13T09:38:15.732268:++ CPU time = 0.000000 sec
201113-09:38:15,915 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:38:15,916 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks".
201113-09:38:15,924 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:38:16,362 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:38:16,363 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201113-09:38:16,368 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-09:38:16,596 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201113-09:38:16,598 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201113-09:38:16,604 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:38:16,846 nipype.interface INFO:
stderr 2020-11-13T09:38:16.846206:++ no -frac option: defaulting to -union
201113-09:38:16,846 nipype.interface INFO:
stderr 2020-11-13T09:38:16.846540:++ processing 1 input dataset(s), NN=2...
201113-09:38:16,846 nipype.interface INFO:
stderr 2020-11-13T09:38:16.846702:++ padding all datasets by 0 (for dilations)
201113-09:38:16,851 nipype.interface INFO:
stderr 2020-11-13T09:38:16.851060:++ frac 0 over 1 volumes gives min count 0
201113-09:38:16,851 nipype.interface INFO:
stderr 2020-11-13T09:38:16.851462:++ voxel limits: 0 clipped, 36227 survived, 103037 were zero
201113-09:38:16,851 nipype.interface INFO:
stderr 2020-11-13T09:38:16.851632:++ writing result sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201113-09:38:16,856 nipype.interface INFO:
stderr 2020-11-13T09:38:16.856172:++ Output dataset ./sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201113-09:38:17,43 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201113-09:38:17,44 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/sinker_0_functional_brain_mask".
201113-09:38:17,51 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:38:17,279 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_functional_brain_mask".
201113-09:38:17,281 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/functional_brain_mask_derivative_0".
201113-09:38:17,285 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201113-09:38:17,499 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201113-09:38:17,504 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:38:18,24 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201113-09:38:18,41 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.functional_brain_mask_derivative_0".
201113-09:38:18,43 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain".
201113-09:38:18,51 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:38:18,297 nipype.interface INFO:
stderr 2020-11-13T09:38:18.297025:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:38:18,297 nipype.interface INFO:
stderr 2020-11-13T09:38:18.297375:++ Authored by: A cast of thousands
201113-09:38:21,406 nipype.interface INFO:
stderr 2020-11-13T09:38:21.406439:++ Output dataset ./sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:38:21,622 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:38:21,624 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize".
201113-09:38:21,629 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201113-09:38:23,875 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:38:23,876 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201113-09:38:23,881 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:38:24,792 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201113-09:38:24,794 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201113-09:38:24,800 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:38:25,47 nipype.interface INFO:
stderr 2020-11-13T09:38:25.047056:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:38:25,47 nipype.interface INFO:
stderr 2020-11-13T09:38:25.047400:++ Authored by: KR Hammett & RW Cox
201113-09:38:25,614 nipype.interface INFO:
stderr 2020-11-13T09:38:25.614763:++ Output dataset ./sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:38:25,807 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.functional_mean".
201113-09:38:25,808 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-128_ses-2/qc_snr_0/_scan_tgng_run-2/std_dev".
201113-09:38:25,815 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/qc_snr_0/_scan_tgng_run-2/std_dev/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:38:26,61 nipype.interface INFO:
stderr 2020-11-13T09:38:26.060935:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:38:26,61 nipype.interface INFO:
stderr 2020-11-13T09:38:26.061340:++ Authored by: KR Hammett & RW Cox
201113-09:38:26,577 nipype.interface INFO:
stderr 2020-11-13T09:38:26.577326:++ Output dataset ./sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:38:26,795 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.qc_snr_0.std_dev".
201113-09:38:26,797 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/sinker_0_functional_preprocessed".
201113-09:38:26,804 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:38:27,30 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed".
201113-09:38:27,32 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize".
201113-09:38:27,37 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:38:28,116 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:38:28,117 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/sinker_0_functional_preprocessed_mask".
201113-09:38:28,125 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:38:28,355 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed_mask".
201113-09:38:28,356 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean".
201113-09:38:28,362 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:38:28,609 nipype.interface INFO:
stderr 2020-11-13T09:38:28.609716:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:38:28,610 nipype.interface INFO:
stderr 2020-11-13T09:38:28.610077:++ Authored by: KR Hammett & RW Cox
201113-09:38:29,167 nipype.interface INFO:
stderr 2020-11-13T09:38:29.167726:++ Output dataset ./sub-128_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201113-09:38:29,362 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:38:29,363 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/sinker_0_mean_functional".
201113-09:38:29,370 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:38:29,602 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_mean_functional".
201113-09:38:29,604 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/norm_motion_params".
201113-09:38:29,611 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:38:29,842 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:38:29,843 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/sinker_0_slice_time_corrected".
201113-09:38:29,850 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:38:30,79 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_slice_time_corrected".
201113-09:38:30,81 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-2/sinker_0_raw_functional".
201113-09:38:30,89 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:38:30,439 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_raw_functional".
201113-09:38:30,441 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_tgng_run-2/check_func_scan".
201113-09:38:30,481 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201113-09:38:30,715 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.check_func_scan".
201113-09:38:30,726 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_tgng_run-1/select_scan_params".
201113-09:38:30,759 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:38:30,994 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.select_scan_params".
201113-09:38:31,5 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_tgng_run-1/s3_scan_params".
201113-09:38:31,13 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:38:31,246 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.s3_scan_params".
201113-09:38:31,250 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/scan_params_0".
201113-09:38:31,259 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-09:38:31,489 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.scan_params_0".
201113-09:38:31,491 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_tgng_run-1/selectrest".
201113-09:38:31,524 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-09:38:31,759 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.selectrest".
201113-09:38:31,771 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_tgng_run-1/check_for_s3".
201113-09:38:31,775 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-09:38:32,65 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.check_for_s3".
201113-09:38:32,66 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-128_ses-2/edit_func_0/_scan_tgng_run-1/func_get_idx".
201113-09:38:32,71 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-09:38:32,302 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.edit_func_0.func_get_idx".
201113-09:38:32,304 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-128_ses-2/edit_func_0/_scan_tgng_run-1/func_drop_trs".
201113-09:38:32,310 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-128/ses-2/func/sub-128_ses-2_task-tgng_run-1_bold.nii.gz[0..129] -expr "a" -prefix sub-128_ses-2_task-tgng_run-1_bold_calc.nii.gz
201113-09:38:32,565 nipype.interface INFO:
stderr 2020-11-13T09:38:32.565538:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:38:32,565 nipype.interface INFO:
stderr 2020-11-13T09:38:32.565963:++ Authored by: A cast of thousands
201113-09:38:38,242 nipype.interface INFO:
stderr 2020-11-13T09:38:38.242367:++ Output dataset ./sub-128_ses-2_task-tgng_run-1_bold_calc.nii.gz
201113-09:38:38,460 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.edit_func_0.func_drop_trs".
201113-09:38:38,461 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique".
201113-09:38:38,509 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-128_ses-2_task-tgng_run-1_bold_calc.nii.gz
201113-09:38:38,765 nipype.interface INFO:
stderr 2020-11-13T09:38:38.765083:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:38:38,765 nipype.interface INFO:
stderr 2020-11-13T09:38:38.765505:++ Authored by: RW Cox
201113-09:38:38,768 nipype.interface INFO:
stderr 2020-11-13T09:38:38.768755:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-128_ses-2_task-tgng_run-1_bold_calc.nii.gz
201113-09:38:38,769 nipype.interface INFO:
stderr 2020-11-13T09:38:38.769388: + deoblique
201113-09:38:38,769 nipype.interface INFO:
stderr 2020-11-13T09:38:38.769590: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-128_ses-2_task-tgng_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-128_ses-2_task-tgng_run-1_bold_calc.nii.gz in NIFTI storage)
201113-09:38:42,536 nipype.interface INFO:
stderr 2020-11-13T09:38:42.536233:++ 3drefit processed 1 datasets
201113-09:38:42,760 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:38:42,761 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient".
201113-09:38:42,768 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-2_task-tgng_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-128_ses-2_task-tgng_run-1_bold_calc.nii.gz
201113-09:38:47,247 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:38:47,248 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI".
201113-09:38:47,255 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-128_ses-2_task-tgng_run-1_bold_calc_resample.nii.gz
201113-09:38:47,506 nipype.interface INFO:
stderr 2020-11-13T09:38:47.505963:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:38:47,506 nipype.interface INFO:
stderr 2020-11-13T09:38:47.506315:++ Authored by: KR Hammett & RW Cox
201113-09:38:47,974 nipype.interface INFO:
stderr 2020-11-13T09:38:47.974790:++ Output dataset ./sub-128_ses-2_task-tgng_run-1_bold_calc_resample_tstat.nii.gz
201113-09:38:48,164 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:38:48,166 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref".
201113-09:38:48,173 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-2_task-tgng_run-1_bold_calc_resample.1D -1Dmatrix_save sub-128_ses-2_task-tgng_run-1_bold_calc_resample.aff12.1D -prefix sub-128_ses-2_task-tgng_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-128_ses-2_task-tgng_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-2_task-tgng_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref/sub-128_ses-2_task-tgng_run-1_bold_calc_resample.nii.gz
201113-09:38:48,443 nipype.interface INFO:
stderr 2020-11-13T09:38:48.443641:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:38:48,444 nipype.interface INFO:
stderr 2020-11-13T09:38:48.444010:++ Authored by: RW Cox
201113-09:38:48,453 nipype.interface INFO:
stderr 2020-11-13T09:38:48.453952:++ Coarse del was 10, replaced with 3
201113-09:40:35,319 nipype.interface INFO:
stderr 2020-11-13T09:40:35.319615:++ Max displacement in automask = 1.17 (mm) at sub-brick 113
201113-09:40:35,320 nipype.interface INFO:
stderr 2020-11-13T09:40:35.320079:++ Max delta displ in automask = 0.74 (mm) at sub-brick 96
201113-09:40:39,164 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:40:39,165 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion".
201113-09:40:39,171 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-128_ses-2_task-tgng_run-1_bold_calc_resample_volreg.nii.gz
201113-09:40:39,428 nipype.interface INFO:
stderr 2020-11-13T09:40:39.428804:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:40:39,429 nipype.interface INFO:
stderr 2020-11-13T09:40:39.429161:++ Authored by: KR Hammett & RW Cox
201113-09:40:39,899 nipype.interface INFO:
stderr 2020-11-13T09:40:39.899356:++ Output dataset ./sub-128_ses-2_task-tgng_run-1_bold_calc_resample_volreg_tstat.nii.gz
201113-09:40:40,87 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:40:40,89 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt".
201113-09:40:40,95 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-128_ses-2_task-tgng_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-128_ses-2_task-tgng_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:41:03,6 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:41:03,15 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calculate_FDJ".
201113-09:41:03,21 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201113-09:41:03,248 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201113-09:41:03,249 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/sinker_0_frame_wise_displacement_jenkinson".
201113-09:41:03,256 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:41:03,486 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201113-09:41:03,488 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/sinker_0_max_displacement".
201113-09:41:03,496 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:41:03,726 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_max_displacement".
201113-09:41:03,728 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/sinker_0_coordinate_transformation".
201113-09:41:03,746 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:41:04,6 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_coordinate_transformation".
201113-09:41:04,18 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull".
201113-09:41:04,24 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf.nii.gz
201113-09:41:04,282 nipype.interface INFO:
stderr 2020-11-13T09:41:04.282248:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:41:04,282 nipype.interface INFO:
stderr 2020-11-13T09:41:04.282904:++ Authored by: KR Hammett & RW Cox
201113-09:41:04,792 nipype.interface INFO:
stderr 2020-11-13T09:41:04.792754:++ Output dataset ./sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat.nii.gz
201113-09:41:04,983 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:41:04,984 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass".
201113-09:41:04,990 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:41:06,822 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:41:06,824 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate".
201113-09:41:06,830 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:41:07,533 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:41:07,534 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask".
201113-09:41:07,540 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask/sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:41:08,12 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:41:08,13 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize".
201113-09:41:08,19 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize/sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:41:08,268 nipype.interface INFO:
stderr 2020-11-13T09:41:08.268192:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:42:22,691 nipype.interface INFO:
stderr 2020-11-13T09:42:22.691100: + Pre-processing: IAV..UW[s3896]Im
201113-09:42:22,708 nipype.interface INFO:
stderr 2020-11-13T09:42:22.708754:++ Output dataset ./uni.nii.gz
201113-09:42:22,709 nipype.interface INFO:
stderr 2020-11-13T09:42:22.709049:++ ===== Elapsed = 74.4 sec
201113-09:42:22,922 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:42:22,924 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass".
201113-09:42:22,930 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:42:23,187 nipype.interface INFO:
stderr 2020-11-13T09:42:23.186961:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:42:23,187 nipype.interface INFO:
stderr 2020-11-13T09:42:23.187854:++ Authored by: Emperor Zhark
201113-09:42:23,190 nipype.interface INFO:
stderr 2020-11-13T09:42:23.190727:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:42:23,197 nipype.interface INFO:
stderr 2020-11-13T09:42:23.196994:++ Forming automask
201113-09:42:23,199 nipype.interface INFO:
stderr 2020-11-13T09:42:23.199113: + Fixed clip level = 406.857758
201113-09:42:23,203 nipype.interface INFO:
stderr 2020-11-13T09:42:23.203560: + Used gradual clip level = 368.245514 .. 482.751526
201113-09:42:23,203 nipype.interface INFO:
stderr 2020-11-13T09:42:23.203819: + Number voxels above clip level = 29947
201113-09:42:23,204 nipype.interface INFO:
stderr 2020-11-13T09:42:23.204014: + Clustering voxels ...
201113-09:42:23,205 nipype.interface INFO:
stderr 2020-11-13T09:42:23.205440: + Largest cluster has 29942 voxels
201113-09:42:23,207 nipype.interface INFO:
stderr 2020-11-13T09:42:23.207177: + Clustering voxels ...
201113-09:42:23,208 nipype.interface INFO:
stderr 2020-11-13T09:42:23.208732: + Largest cluster has 29540 voxels
201113-09:42:23,212 nipype.interface INFO:
stderr 2020-11-13T09:42:23.212140: + Filled 605 voxels in small holes; now have 30145 voxels
201113-09:42:23,215 nipype.interface INFO:
stderr 2020-11-13T09:42:23.215375: + Filled 4 voxels in large holes; now have 30149 voxels
201113-09:42:23,216 nipype.interface INFO:
stderr 2020-11-13T09:42:23.216628: + Clustering voxels ...
201113-09:42:23,217 nipype.interface INFO:
stderr 2020-11-13T09:42:23.217721: + Largest cluster has 30149 voxels
201113-09:42:23,217 nipype.interface INFO:
stderr 2020-11-13T09:42:23.217956: + Clustering non-brain voxels ...
201113-09:42:23,218 nipype.interface INFO:
stderr 2020-11-13T09:42:23.218105: + Clustering voxels ...
201113-09:42:23,221 nipype.interface INFO:
stderr 2020-11-13T09:42:23.220999: + Largest cluster has 109103 voxels
201113-09:42:23,221 nipype.interface INFO:
stderr 2020-11-13T09:42:23.221331: + Mask now has 30161 voxels
201113-09:42:23,221 nipype.interface INFO:
stderr 2020-11-13T09:42:23.221495:++ Dilating automask
201113-09:42:23,228 nipype.interface INFO:
stderr 2020-11-13T09:42:23.228969: + Clustering voxels ...
201113-09:42:23,231 nipype.interface INFO:
stderr 2020-11-13T09:42:23.231359: + Largest cluster has 103060 voxels
201113-09:42:23,231 nipype.interface INFO:
stderr 2020-11-13T09:42:23.231698:++ 36204 voxels in the mask [out of 139264: 26.00%]
201113-09:42:23,231 nipype.interface INFO:
stderr 2020-11-13T09:42:23.231869:++ first 9 x-planes are zero [from R]
201113-09:42:23,232 nipype.interface INFO:
stderr 2020-11-13T09:42:23.232031:++ last 9 x-planes are zero [from L]
201113-09:42:23,232 nipype.interface INFO:
stderr 2020-11-13T09:42:23.232176:++ first 5 y-planes are zero [from P]
201113-09:42:23,232 nipype.interface INFO:
stderr 2020-11-13T09:42:23.232317:++ last 3 y-planes are zero [from A]
201113-09:42:23,232 nipype.interface INFO:
stderr 2020-11-13T09:42:23.232460:++ first 0 z-planes are zero [from I]
201113-09:42:23,232 nipype.interface INFO:
stderr 2020-11-13T09:42:23.232598:++ last 1 z-planes are zero [from S]
201113-09:42:23,236 nipype.interface INFO:
stderr 2020-11-13T09:42:23.236693:++ Output dataset ./uni_mask.nii.gz
201113-09:42:23,236 nipype.interface INFO:
stderr 2020-11-13T09:42:23.236869:++ applying mask to original data
201113-09:42:23,237 nipype.interface INFO:
stderr 2020-11-13T09:42:23.237770:++ Writing masked data
201113-09:42:23,252 nipype.interface INFO:
stderr 2020-11-13T09:42:23.252332:++ Output dataset ./uni_masked.nii.gz
201113-09:42:23,252 nipype.interface INFO:
stderr 2020-11-13T09:42:23.252658:++ CPU time = 0.000000 sec
201113-09:42:23,441 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:42:23,443 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks".
201113-09:42:23,449 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:42:23,889 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:42:23,891 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/cal_DVARS".
201113-09:42:23,897 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201113-09:42:24,583 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201113-09:42:24,584 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain".
201113-09:42:24,592 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:42:24,842 nipype.interface INFO:
stderr 2020-11-13T09:42:24.842043:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:42:24,842 nipype.interface INFO:
stderr 2020-11-13T09:42:24.842420:++ Authored by: A cast of thousands
201113-09:42:27,616 nipype.interface INFO:
stderr 2020-11-13T09:42:27.616667:++ Output dataset ./sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:42:27,811 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:42:27,813 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize".
201113-09:42:27,818 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain/sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201113-09:42:30,38 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:42:30,39 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize".
201113-09:42:30,46 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize/sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:42:31,115 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:42:31,117 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean".
201113-09:42:31,122 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:42:31,375 nipype.interface INFO:
stderr 2020-11-13T09:42:31.375816:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:42:31,376 nipype.interface INFO:
stderr 2020-11-13T09:42:31.376173:++ Authored by: KR Hammett & RW Cox
201113-09:42:31,681 nipype.interface INFO:
stderr 2020-11-13T09:42:31.681755:++ Output dataset ./sub-128_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201113-09:42:31,876 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:42:31,877 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/norm_motion_params".
201113-09:42:31,883 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:42:32,112 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:42:32,113 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-2/qc_motion_0/_scan_tgng_run-1/motion_plot".
201113-09:42:32,117 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201113-09:42:32,559 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.qc_motion_0.motion_plot".
201113-09:42:32,560 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/sinker_0_qc___movement_trans_plot".
201113-09:42:32,566 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:42:32,779 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc___movement_trans_plot/_scan_tgng_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc/movement_trans_plot/_scan_tgng_run-1/motion_trans_plot.png
201113-09:42:32,797 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_trans_plot".
201113-09:42:32,799 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/sinker_0_qc___movement_rot_plot".
201113-09:42:32,805 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:42:33,18 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc___movement_rot_plot/_scan_tgng_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc/movement_rot_plot/_scan_tgng_run-1/motion_rot_plot.png
201113-09:42:33,36 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_rot_plot".
201113-09:42:33,38 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calc_motion_parameters".
201113-09:42:33,44 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:42:33,278 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201113-09:42:33,280 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/sinker_0_motion_params".
201113-09:42:33,287 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:42:33,518 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_motion_params".
201113-09:42:33,520 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calculate_FD".
201113-09:42:33,524 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201113-09:42:33,753 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201113-09:42:33,754 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/sinker_0_frame_wise_displacement_power".
201113-09:42:33,760 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:42:33,989 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_power".
201113-09:42:33,991 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calc_power_parameters".
201113-09:42:33,997 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:42:34,231 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201113-09:42:34,233 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/sinker_0_power_params".
201113-09:42:34,240 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:42:34,471 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_power_params".
201113-09:42:34,472 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/sinker_0_movement_parameters".
201113-09:42:34,479 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:42:34,711 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_movement_parameters".
201113-09:42:34,712 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/func_despiked_0".
201113-09:42:34,719 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-128_ses-2_task-tgng_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/func_despiked_0/sub-128_ses-2_task-tgng_run-1_bold_calc.nii.gz
201113-09:42:34,979 nipype.interface INFO:
stderr 2020-11-13T09:42:34.979108:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:42:34,979 nipype.interface INFO:
stderr 2020-11-13T09:42:34.979801:++ Authored by: RW Cox
201113-09:42:34,983 nipype.interface INFO:
stderr 2020-11-13T09:42:34.983279:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:42:34,983 nipype.interface INFO:
stderr 2020-11-13T09:42:34.983279: such as /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/func_despiked_0/sub-128_ses-2_task-tgng_run-1_bold_calc.nii.gz,
201113-09:42:34,983 nipype.interface INFO:
stderr 2020-11-13T09:42:34.983279: or viewing/combining it with volumes of differing obliquity,
201113-09:42:34,983 nipype.interface INFO:
stderr 2020-11-13T09:42:34.983279: you should consider running:
201113-09:42:34,983 nipype.interface INFO:
stderr 2020-11-13T09:42:34.983279: 3dWarp -deoblique
201113-09:42:34,984 nipype.interface INFO:
stderr 2020-11-13T09:42:34.983279: on this and other oblique datasets in the same session.
201113-09:42:34,984 nipype.interface INFO:
stderr 2020-11-13T09:42:34.983279: See 3dWarp -help for details.
201113-09:42:34,984 nipype.interface INFO:
stderr 2020-11-13T09:42:34.984483:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/func_despiked_0/sub-128_ses-2_task-tgng_run-1_bold_calc.nii.gz is 19.900011 degrees from plumb.
201113-09:42:34,984 nipype.interface INFO:
stderr 2020-11-13T09:42:34.984748:++ Input dataset is in short format, but output will be in float format
201113-09:42:34,985 nipype.interface INFO:
stderr 2020-11-13T09:42:34.984987:++ ignoring first 0 time points, using last 130
201113-09:42:34,985 nipype.interface INFO:
stderr 2020-11-13T09:42:34.985224:++ using 130 time points => -corder 4
201113-09:42:34,985 nipype.interface INFO:
stderr 2020-11-13T09:42:34.985669:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/func_despiked_0/sub-128_ses-2_task-tgng_run-1_bold_calc.nii.gz
201113-09:42:35,448 nipype.interface INFO:
stderr 2020-11-13T09:42:35.448734:++ 33377 voxels in the automask [out of 139264 in dataset]
201113-09:42:35,454 nipype.interface INFO:
stderr 2020-11-13T09:42:35.454280:++ 57590 voxels in the dilated automask [out of 139264 in dataset]
201113-09:42:35,465 nipype.interface INFO:
stderr 2020-11-13T09:42:35.465472:++ Procesing time series with OLD model fit algorithm
201113-09:42:35,465 nipype.interface INFO:
stderr 2020-11-13T09:42:35.465660:++ smash edit thresholds: 3.1 .. 5.0 MADs
201113-09:42:35,465 nipype.interface INFO:
stderr 2020-11-13T09:42:35.465821: + [ 3.457% .. 0.072% of normal distribution]
201113-09:42:35,465 nipype.interface INFO:
stderr 2020-11-13T09:42:35.465974: + [ 8.839% .. 3.125% of Laplace distribution]
201113-09:42:35,466 nipype.interface INFO:
stderr 2020-11-13T09:42:35.466137:++ start OpenMP thread #0
201113-09:42:41,452 nipype.interface INFO:
stderr 2020-11-13T09:42:41.452819:..........................
201113-09:42:41,453 nipype.interface INFO:
stderr 2020-11-13T09:42:41.453299:++ Elapsed despike time = 5s 987ms
201113-09:42:41,453 nipype.interface INFO:
stderr 2020-11-13T09:42:41.453460:
201113-09:42:41,454 nipype.interface INFO:
stderr 2020-11-13T09:42:41.454284:++ FINAL: 7486700 data points, 537037 edits [7.173%], 101585 big edits [1.357%]
201113-09:42:45,435 nipype.interface INFO:
stderr 2020-11-13T09:42:45.435913:++ Output dataset ./sub-128_ses-2_task-tgng_run-1_bold_calc_despike.nii.gz
201113-09:42:45,661 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_despiked_0".
201113-09:42:45,662 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing".
201113-09:42:45,671 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:42:45,672 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing/sub-128_ses-2_task-tgng_run-1_bold_calc_despike.nii.gz
201113-09:42:45,882 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:42:45,925 nipype.interface INFO:
stderr 2020-11-13T09:42:45.925438:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:42:45,929 nipype.interface INFO:
stderr 2020-11-13T09:42:45.929102:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:42:45,929 nipype.interface INFO:
stderr 2020-11-13T09:42:45.929102: such as /outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing/sub-128_ses-2_task-tgng_run-1_bold_calc_despike.nii.gz,
201113-09:42:45,929 nipype.interface INFO:
stderr 2020-11-13T09:42:45.929102: or viewing/combining it with volumes of differing obliquity,
201113-09:42:45,929 nipype.interface INFO:
stderr 2020-11-13T09:42:45.929102: you should consider running:
201113-09:42:45,929 nipype.interface INFO:
stderr 2020-11-13T09:42:45.929102: 3dWarp -deoblique
201113-09:42:45,929 nipype.interface INFO:
stderr 2020-11-13T09:42:45.929102: on this and other oblique datasets in the same session.
201113-09:42:45,930 nipype.interface INFO:
stderr 2020-11-13T09:42:45.929102: See 3dWarp -help for details.
201113-09:42:45,930 nipype.interface INFO:
stderr 2020-11-13T09:42:45.930299:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing/sub-128_ses-2_task-tgng_run-1_bold_calc_despike.nii.gz is 19.900011 degrees from plumb.
201113-09:42:50,216 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_slice_timing_correction_0.slice_timing".
201113-09:42:50,217 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique".
201113-09:42:50,273 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift.nii.gz
201113-09:42:50,522 nipype.interface INFO:
stderr 2020-11-13T09:42:50.522233:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:42:50,522 nipype.interface INFO:
stderr 2020-11-13T09:42:50.522636:++ Authored by: RW Cox
201113-09:42:50,533 nipype.interface INFO:
stderr 2020-11-13T09:42:50.533063:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift.nii.gz
201113-09:42:50,534 nipype.interface INFO:
stderr 2020-11-13T09:42:50.534123: + deoblique
201113-09:42:50,534 nipype.interface INFO:
stderr 2020-11-13T09:42:50.534401: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201113-09:42:52,695 nipype.interface INFO:
stderr 2020-11-13T09:42:52.695206:++ 3drefit processed 1 datasets
201113-09:42:52,914 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:42:52,915 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient".
201113-09:42:52,920 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift.nii.gz
201113-09:42:55,683 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:42:55,685 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI".
201113-09:42:55,692 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-09:42:55,951 nipype.interface INFO:
stderr 2020-11-13T09:42:55.951364:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:42:55,952 nipype.interface INFO:
stderr 2020-11-13T09:42:55.952080:++ Authored by: KR Hammett & RW Cox
201113-09:42:56,549 nipype.interface INFO:
stderr 2020-11-13T09:42:56.549725:++ Output dataset ./sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201113-09:42:56,741 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:42:56,743 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref".
201113-09:42:56,750 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-09:42:56,996 nipype.interface INFO:
stderr 2020-11-13T09:42:56.996369:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:42:56,997 nipype.interface INFO:
stderr 2020-11-13T09:42:56.997051:++ Authored by: RW Cox
201113-09:42:57,4 nipype.interface INFO:
stderr 2020-11-13T09:42:57.004580:++ Coarse del was 10, replaced with 3
201113-09:44:43,827 nipype.interface INFO:
stderr 2020-11-13T09:44:43.827736:++ Max displacement in automask = 1.15 (mm) at sub-brick 113
201113-09:44:43,828 nipype.interface INFO:
stderr 2020-11-13T09:44:43.828292:++ Max delta displ in automask = 0.54 (mm) at sub-brick 97
201113-09:44:48,510 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:44:48,512 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion".
201113-09:44:48,517 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201113-09:44:48,774 nipype.interface INFO:
stderr 2020-11-13T09:44:48.773979:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:44:48,774 nipype.interface INFO:
stderr 2020-11-13T09:44:48.774324:++ Authored by: KR Hammett & RW Cox
201113-09:44:49,566 nipype.interface INFO:
stderr 2020-11-13T09:44:49.565960:++ Output dataset ./sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201113-09:44:49,769 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:44:49,771 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt".
201113-09:44:49,777 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:45:10,844 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:45:10,852 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/sinker_0_motion_correct".
201113-09:45:10,861 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:45:11,87 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_motion_correct".
201113-09:45:11,89 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull".
201113-09:45:11,96 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201113-09:45:11,351 nipype.interface INFO:
stderr 2020-11-13T09:45:11.351699:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:45:11,352 nipype.interface INFO:
stderr 2020-11-13T09:45:11.352240:++ Authored by: KR Hammett & RW Cox
201113-09:45:11,986 nipype.interface INFO:
stderr 2020-11-13T09:45:11.986601:++ Output dataset ./sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201113-09:45:12,179 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:45:12,181 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass".
201113-09:45:12,187 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:45:14,52 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:45:14,53 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate".
201113-09:45:14,59 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:45:14,726 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:45:14,727 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask".
201113-09:45:14,734 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:45:15,189 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:45:15,191 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize".
201113-09:45:15,196 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:45:15,453 nipype.interface INFO:
stderr 2020-11-13T09:45:15.453067:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:46:29,818 nipype.interface INFO:
stderr 2020-11-13T09:46:29.818846: + Pre-processing: IAV..UW[s3894]Im
201113-09:46:29,833 nipype.interface INFO:
stderr 2020-11-13T09:46:29.832989:++ Output dataset ./uni.nii.gz
201113-09:46:29,833 nipype.interface INFO:
stderr 2020-11-13T09:46:29.833266:++ ===== Elapsed = 74.4 sec
201113-09:46:30,44 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:46:30,45 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass".
201113-09:46:30,51 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:46:30,308 nipype.interface INFO:
stderr 2020-11-13T09:46:30.308370:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:46:30,309 nipype.interface INFO:
stderr 2020-11-13T09:46:30.309079:++ Authored by: Emperor Zhark
201113-09:46:30,312 nipype.interface INFO:
stderr 2020-11-13T09:46:30.312348:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:46:30,318 nipype.interface INFO:
stderr 2020-11-13T09:46:30.318499:++ Forming automask
201113-09:46:30,319 nipype.interface INFO:
stderr 2020-11-13T09:46:30.319845: + Fixed clip level = 406.804138
201113-09:46:30,323 nipype.interface INFO:
stderr 2020-11-13T09:46:30.323160: + Used gradual clip level = 369.108459 .. 481.804840
201113-09:46:30,323 nipype.interface INFO:
stderr 2020-11-13T09:46:30.323377: + Number voxels above clip level = 29951
201113-09:46:30,323 nipype.interface INFO:
stderr 2020-11-13T09:46:30.323551: + Clustering voxels ...
201113-09:46:30,324 nipype.interface INFO:
stderr 2020-11-13T09:46:30.324649: + Largest cluster has 29946 voxels
201113-09:46:30,326 nipype.interface INFO:
stderr 2020-11-13T09:46:30.326222: + Clustering voxels ...
201113-09:46:30,327 nipype.interface INFO:
stderr 2020-11-13T09:46:30.327333: + Largest cluster has 29540 voxels
201113-09:46:30,330 nipype.interface INFO:
stderr 2020-11-13T09:46:30.330723: + Filled 604 voxels in small holes; now have 30144 voxels
201113-09:46:30,334 nipype.interface INFO:
stderr 2020-11-13T09:46:30.334341: + Filled 4 voxels in large holes; now have 30148 voxels
201113-09:46:30,335 nipype.interface INFO:
stderr 2020-11-13T09:46:30.335607: + Clustering voxels ...
201113-09:46:30,336 nipype.interface INFO:
stderr 2020-11-13T09:46:30.336697: + Largest cluster has 30148 voxels
201113-09:46:30,336 nipype.interface INFO:
stderr 2020-11-13T09:46:30.336936: + Clustering non-brain voxels ...
201113-09:46:30,337 nipype.interface INFO:
stderr 2020-11-13T09:46:30.337089: + Clustering voxels ...
201113-09:46:30,340 nipype.interface INFO:
stderr 2020-11-13T09:46:30.340015: + Largest cluster has 109104 voxels
201113-09:46:30,340 nipype.interface INFO:
stderr 2020-11-13T09:46:30.340355: + Mask now has 30160 voxels
201113-09:46:30,340 nipype.interface INFO:
stderr 2020-11-13T09:46:30.340523:++ Dilating automask
201113-09:46:30,347 nipype.interface INFO:
stderr 2020-11-13T09:46:30.347707: + Clustering voxels ...
201113-09:46:30,350 nipype.interface INFO:
stderr 2020-11-13T09:46:30.350150: + Largest cluster has 103059 voxels
201113-09:46:30,350 nipype.interface INFO:
stderr 2020-11-13T09:46:30.350495:++ 36205 voxels in the mask [out of 139264: 26.00%]
201113-09:46:30,350 nipype.interface INFO:
stderr 2020-11-13T09:46:30.350677:++ first 9 x-planes are zero [from R]
201113-09:46:30,350 nipype.interface INFO:
stderr 2020-11-13T09:46:30.350850:++ last 9 x-planes are zero [from L]
201113-09:46:30,351 nipype.interface INFO:
stderr 2020-11-13T09:46:30.351014:++ first 5 y-planes are zero [from P]
201113-09:46:30,351 nipype.interface INFO:
stderr 2020-11-13T09:46:30.351159:++ last 3 y-planes are zero [from A]
201113-09:46:30,351 nipype.interface INFO:
stderr 2020-11-13T09:46:30.351297:++ first 0 z-planes are zero [from I]
201113-09:46:30,351 nipype.interface INFO:
stderr 2020-11-13T09:46:30.351446:++ last 1 z-planes are zero [from S]
201113-09:46:30,355 nipype.interface INFO:
stderr 2020-11-13T09:46:30.355493:++ Output dataset ./uni_mask.nii.gz
201113-09:46:30,355 nipype.interface INFO:
stderr 2020-11-13T09:46:30.355670:++ applying mask to original data
201113-09:46:30,356 nipype.interface INFO:
stderr 2020-11-13T09:46:30.356341:++ Writing masked data
201113-09:46:30,370 nipype.interface INFO:
stderr 2020-11-13T09:46:30.370088:++ Output dataset ./uni_masked.nii.gz
201113-09:46:30,370 nipype.interface INFO:
stderr 2020-11-13T09:46:30.370344:++ CPU time = 0.000000 sec
201113-09:46:30,559 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:46:30,560 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks".
201113-09:46:30,566 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:46:31,12 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:46:31,14 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201113-09:46:31,19 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-09:46:31,248 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201113-09:46:31,250 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201113-09:46:31,257 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:46:31,506 nipype.interface INFO:
stderr 2020-11-13T09:46:31.506392:++ no -frac option: defaulting to -union
201113-09:46:31,506 nipype.interface INFO:
stderr 2020-11-13T09:46:31.506743:++ processing 1 input dataset(s), NN=2...
201113-09:46:31,506 nipype.interface INFO:
stderr 2020-11-13T09:46:31.506905:++ padding all datasets by 0 (for dilations)
201113-09:46:31,511 nipype.interface INFO:
stderr 2020-11-13T09:46:31.511319:++ frac 0 over 1 volumes gives min count 0
201113-09:46:31,511 nipype.interface INFO:
stderr 2020-11-13T09:46:31.511725:++ voxel limits: 0 clipped, 36147 survived, 103117 were zero
201113-09:46:31,511 nipype.interface INFO:
stderr 2020-11-13T09:46:31.511895:++ writing result sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201113-09:46:31,516 nipype.interface INFO:
stderr 2020-11-13T09:46:31.516281:++ Output dataset ./sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201113-09:46:31,705 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201113-09:46:31,706 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/sinker_0_functional_brain_mask".
201113-09:46:31,713 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:46:31,939 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_functional_brain_mask".
201113-09:46:31,941 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/functional_brain_mask_derivative_0".
201113-09:46:31,945 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201113-09:46:32,159 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201113-09:46:32,164 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:46:32,681 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201113-09:46:32,697 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.functional_brain_mask_derivative_0".
201113-09:46:32,699 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain".
201113-09:46:32,707 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:46:32,957 nipype.interface INFO:
stderr 2020-11-13T09:46:32.957836:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:46:32,958 nipype.interface INFO:
stderr 2020-11-13T09:46:32.958213:++ Authored by: A cast of thousands
201113-09:46:36,42 nipype.interface INFO:
stderr 2020-11-13T09:46:36.042190:++ Output dataset ./sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:46:36,235 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:46:36,237 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize".
201113-09:46:36,243 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201113-09:46:38,521 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:46:38,523 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201113-09:46:38,528 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:46:39,452 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201113-09:46:39,454 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201113-09:46:39,459 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:46:39,714 nipype.interface INFO:
stderr 2020-11-13T09:46:39.714592:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:46:39,714 nipype.interface INFO:
stderr 2020-11-13T09:46:39.714935:++ Authored by: KR Hammett & RW Cox
201113-09:46:40,281 nipype.interface INFO:
stderr 2020-11-13T09:46:40.281217:++ Output dataset ./sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:46:40,474 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.functional_mean".
201113-09:46:40,475 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-128_ses-2/qc_snr_0/_scan_tgng_run-1/std_dev".
201113-09:46:40,481 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/qc_snr_0/_scan_tgng_run-1/std_dev/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:46:40,737 nipype.interface INFO:
stderr 2020-11-13T09:46:40.736939:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:46:40,737 nipype.interface INFO:
stderr 2020-11-13T09:46:40.737366:++ Authored by: KR Hammett & RW Cox
201113-09:46:41,259 nipype.interface INFO:
stderr 2020-11-13T09:46:41.259093:++ Output dataset ./sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:46:41,453 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.qc_snr_0.std_dev".
201113-09:46:41,454 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/sinker_0_functional_preprocessed".
201113-09:46:41,462 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:46:41,689 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed".
201113-09:46:41,691 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize".
201113-09:46:41,696 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:46:42,770 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:46:42,771 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/sinker_0_functional_preprocessed_mask".
201113-09:46:42,778 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:46:43,12 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed_mask".
201113-09:46:43,14 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean".
201113-09:46:43,20 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:46:43,267 nipype.interface INFO:
stderr 2020-11-13T09:46:43.267261:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:46:43,267 nipype.interface INFO:
stderr 2020-11-13T09:46:43.267688:++ Authored by: KR Hammett & RW Cox
201113-09:46:43,818 nipype.interface INFO:
stderr 2020-11-13T09:46:43.818808:++ Output dataset ./sub-128_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201113-09:46:44,41 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:46:44,43 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/sinker_0_mean_functional".
201113-09:46:44,49 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:46:44,277 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_mean_functional".
201113-09:46:44,279 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/norm_motion_params".
201113-09:46:44,285 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:46:44,519 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:46:44,520 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/sinker_0_slice_time_corrected".
201113-09:46:44,527 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:46:44,757 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_slice_time_corrected".
201113-09:46:44,759 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_tgng_run-1/sinker_0_raw_functional".
201113-09:46:44,766 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:46:45,115 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_raw_functional".
201113-09:46:45,117 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_tgng_run-1/check_func_scan".
201113-09:46:45,152 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201113-09:46:45,384 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.check_func_scan".
201113-09:46:45,396 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_rest_run-1/select_scan_params".
201113-09:46:45,428 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:46:45,663 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.select_scan_params".
201113-09:46:45,673 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_rest_run-1/s3_scan_params".
201113-09:46:45,681 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:46:45,912 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.s3_scan_params".
201113-09:46:45,915 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/scan_params_0".
201113-09:46:45,924 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-09:46:46,151 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.scan_params_0".
201113-09:46:46,154 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_rest_run-1/selectrest".
201113-09:46:46,190 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-09:46:46,422 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.selectrest".
201113-09:46:46,433 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_rest_run-1/check_for_s3".
201113-09:46:46,438 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-09:46:46,717 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.check_for_s3".
201113-09:46:46,719 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-128_ses-2/edit_func_0/_scan_rest_run-1/func_get_idx".
201113-09:46:46,724 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-09:46:46,954 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.edit_func_0.func_get_idx".
201113-09:46:46,955 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-128_ses-2/edit_func_0/_scan_rest_run-1/func_drop_trs".
201113-09:46:46,961 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-128/ses-2/func/sub-128_ses-2_task-rest_run-1_bold.nii.gz[0..80] -expr "a" -prefix sub-128_ses-2_task-rest_run-1_bold_calc.nii.gz
201113-09:46:47,212 nipype.interface INFO:
stderr 2020-11-13T09:46:47.212173:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:46:47,212 nipype.interface INFO:
stderr 2020-11-13T09:46:47.212568:++ Authored by: A cast of thousands
201113-09:46:50,956 nipype.interface INFO:
stderr 2020-11-13T09:46:50.956648:++ Output dataset ./sub-128_ses-2_task-rest_run-1_bold_calc.nii.gz
201113-09:46:51,173 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.edit_func_0.func_drop_trs".
201113-09:46:51,174 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique".
201113-09:46:51,203 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-128_ses-2_task-rest_run-1_bold_calc.nii.gz
201113-09:46:51,454 nipype.interface INFO:
stderr 2020-11-13T09:46:51.454400:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:46:51,455 nipype.interface INFO:
stderr 2020-11-13T09:46:51.455001:++ Authored by: RW Cox
201113-09:46:51,465 nipype.interface INFO:
stderr 2020-11-13T09:46:51.465581:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-128_ses-2_task-rest_run-1_bold_calc.nii.gz
201113-09:46:51,466 nipype.interface INFO:
stderr 2020-11-13T09:46:51.466387: + deoblique
201113-09:46:51,466 nipype.interface INFO:
stderr 2020-11-13T09:46:51.466641: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-128_ses-2_task-rest_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-128_ses-2_task-rest_run-1_bold_calc.nii.gz in NIFTI storage)
201113-09:46:54,51 nipype.interface INFO:
stderr 2020-11-13T09:46:54.051788:++ 3drefit processed 1 datasets
201113-09:46:54,240 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:46:54,242 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient".
201113-09:46:54,249 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-2_task-rest_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient/sub-128_ses-2_task-rest_run-1_bold_calc.nii.gz
201113-09:46:57,327 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:46:57,329 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI".
201113-09:46:57,334 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-rest_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI/sub-128_ses-2_task-rest_run-1_bold_calc_resample.nii.gz
201113-09:46:57,589 nipype.interface INFO:
stderr 2020-11-13T09:46:57.589227:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:46:57,590 nipype.interface INFO:
stderr 2020-11-13T09:46:57.590040:++ Authored by: KR Hammett & RW Cox
201113-09:46:57,877 nipype.interface INFO:
stderr 2020-11-13T09:46:57.877423:++ Output dataset ./sub-128_ses-2_task-rest_run-1_bold_calc_resample_tstat.nii.gz
201113-09:46:58,71 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:46:58,72 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_generate_ref".
201113-09:46:58,79 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-2_task-rest_run-1_bold_calc_resample.1D -1Dmatrix_save sub-128_ses-2_task-rest_run-1_bold_calc_resample.aff12.1D -prefix sub-128_ses-2_task-rest_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI/sub-128_ses-2_task-rest_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-2_task-rest_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_generate_ref/sub-128_ses-2_task-rest_run-1_bold_calc_resample.nii.gz
201113-09:46:58,342 nipype.interface INFO:
stderr 2020-11-13T09:46:58.342200:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:46:58,342 nipype.interface INFO:
stderr 2020-11-13T09:46:58.342865:++ Authored by: RW Cox
201113-09:46:58,356 nipype.interface INFO:
stderr 2020-11-13T09:46:58.356085:++ Coarse del was 10, replaced with 3
201113-09:48:02,616 nipype.interface INFO:
stderr 2020-11-13T09:48:02.616444:++ Max displacement in automask = 4.00 (mm) at sub-brick 2
201113-09:48:02,616 nipype.interface INFO:
stderr 2020-11-13T09:48:02.616935:++ Max delta displ in automask = 3.11 (mm) at sub-brick 4
201113-09:48:05,233 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:48:05,235 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion".
201113-09:48:05,242 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-rest_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion/sub-128_ses-2_task-rest_run-1_bold_calc_resample_volreg.nii.gz
201113-09:48:05,498 nipype.interface INFO:
stderr 2020-11-13T09:48:05.498107:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:48:05,498 nipype.interface INFO:
stderr 2020-11-13T09:48:05.498651:++ Authored by: KR Hammett & RW Cox
201113-09:48:05,793 nipype.interface INFO:
stderr 2020-11-13T09:48:05.793018:++ Output dataset ./sub-128_ses-2_task-rest_run-1_bold_calc_resample_volreg_tstat.nii.gz
201113-09:48:05,986 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:48:05,987 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt".
201113-09:48:05,995 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient/sub-128_ses-2_task-rest_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt/sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion/sub-128_ses-2_task-rest_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:48:26,533 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:48:26,539 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/calculate_FDJ".
201113-09:48:26,545 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201113-09:48:26,774 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201113-09:48:26,776 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/sinker_0_frame_wise_displacement_jenkinson".
201113-09:48:26,782 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:48:27,9 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201113-09:48:27,11 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/sinker_0_max_displacement".
201113-09:48:27,19 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:48:27,249 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_max_displacement".
201113-09:48:27,251 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/sinker_0_coordinate_transformation".
201113-09:48:27,265 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:48:27,517 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_coordinate_transformation".
201113-09:48:27,524 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull".
201113-09:48:27,531 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull/sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf.nii.gz
201113-09:48:27,788 nipype.interface INFO:
stderr 2020-11-13T09:48:27.788010:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:48:27,788 nipype.interface INFO:
stderr 2020-11-13T09:48:27.788373:++ Authored by: KR Hammett & RW Cox
201113-09:48:28,111 nipype.interface INFO:
stderr 2020-11-13T09:48:28.111609:++ Output dataset ./sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat.nii.gz
201113-09:48:28,303 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:48:28,305 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass".
201113-09:48:28,311 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull/sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:48:30,133 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:48:30,134 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate".
201113-09:48:30,141 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate/sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:48:30,706 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:48:30,708 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_mask".
201113-09:48:30,714 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate/sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_mask/sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:48:31,170 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:48:31,172 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/unifize".
201113-09:48:31,178 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/unifize/sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:48:31,433 nipype.interface INFO:
stderr 2020-11-13T09:48:31.433029:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:49:25,576 nipype.interface INFO:
stderr 2020-11-13T09:49:25.576105: + Pre-processing: IAV..UW[s2859]Im
201113-09:49:25,585 nipype.interface INFO:
stderr 2020-11-13T09:49:25.585746:++ Output dataset ./uni.nii.gz
201113-09:49:25,585 nipype.interface INFO:
stderr 2020-11-13T09:49:25.585963:++ ===== Elapsed = 54.2 sec
201113-09:49:25,803 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:49:25,804 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass".
201113-09:49:25,810 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:49:26,63 nipype.interface INFO:
stderr 2020-11-13T09:49:26.063116:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:49:26,63 nipype.interface INFO:
stderr 2020-11-13T09:49:26.063734:++ Authored by: Emperor Zhark
201113-09:49:26,66 nipype.interface INFO:
stderr 2020-11-13T09:49:26.066531:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:49:26,71 nipype.interface INFO:
stderr 2020-11-13T09:49:26.071083:++ Forming automask
201113-09:49:26,72 nipype.interface INFO:
stderr 2020-11-13T09:49:26.072911: + Fixed clip level = 442.428650
201113-09:49:26,76 nipype.interface INFO:
stderr 2020-11-13T09:49:26.076907: + Used gradual clip level = 407.082275 .. 493.942627
201113-09:49:26,77 nipype.interface INFO:
stderr 2020-11-13T09:49:26.077156: + Number voxels above clip level = 17143
201113-09:49:26,77 nipype.interface INFO:
stderr 2020-11-13T09:49:26.077346: + Clustering voxels ...
201113-09:49:26,78 nipype.interface INFO:
stderr 2020-11-13T09:49:26.078434: + Largest cluster has 17140 voxels
201113-09:49:26,79 nipype.interface INFO:
stderr 2020-11-13T09:49:26.079527: + Clustering voxels ...
201113-09:49:26,80 nipype.interface INFO:
stderr 2020-11-13T09:49:26.080340: + Largest cluster has 16761 voxels
201113-09:49:26,83 nipype.interface INFO:
stderr 2020-11-13T09:49:26.083615: + Filled 391 voxels in small holes; now have 17152 voxels
201113-09:49:26,85 nipype.interface INFO:
stderr 2020-11-13T09:49:26.085786: + Clustering voxels ...
201113-09:49:26,86 nipype.interface INFO:
stderr 2020-11-13T09:49:26.086601: + Largest cluster has 17152 voxels
201113-09:49:26,86 nipype.interface INFO:
stderr 2020-11-13T09:49:26.086827: + Clustering non-brain voxels ...
201113-09:49:26,86 nipype.interface INFO:
stderr 2020-11-13T09:49:26.086970: + Clustering voxels ...
201113-09:49:26,90 nipype.interface INFO:
stderr 2020-11-13T09:49:26.090058: + Largest cluster has 118008 voxels
201113-09:49:26,90 nipype.interface INFO:
stderr 2020-11-13T09:49:26.090388: + Mask now has 17160 voxels
201113-09:49:26,90 nipype.interface INFO:
stderr 2020-11-13T09:49:26.090542:++ Dilating automask
201113-09:49:26,95 nipype.interface INFO:
stderr 2020-11-13T09:49:26.095930: + Clustering voxels ...
201113-09:49:26,98 nipype.interface INFO:
stderr 2020-11-13T09:49:26.098486: + Largest cluster has 113890 voxels
201113-09:49:26,98 nipype.interface INFO:
stderr 2020-11-13T09:49:26.098816:++ 21278 voxels in the mask [out of 135168: 15.74%]
201113-09:49:26,99 nipype.interface INFO:
stderr 2020-11-13T09:49:26.098997:++ first 13 x-planes are zero [from R]
201113-09:49:26,99 nipype.interface INFO:
stderr 2020-11-13T09:49:26.099169:++ last 12 x-planes are zero [from L]
201113-09:49:26,99 nipype.interface INFO:
stderr 2020-11-13T09:49:26.099316:++ first 8 y-planes are zero [from P]
201113-09:49:26,99 nipype.interface INFO:
stderr 2020-11-13T09:49:26.099476:++ last 8 y-planes are zero [from A]
201113-09:49:26,99 nipype.interface INFO:
stderr 2020-11-13T09:49:26.099611:++ first 0 z-planes are zero [from I]
201113-09:49:26,99 nipype.interface INFO:
stderr 2020-11-13T09:49:26.099757:++ last 5 z-planes are zero [from S]
201113-09:49:26,103 nipype.interface INFO:
stderr 2020-11-13T09:49:26.103291:++ Output dataset ./uni_mask.nii.gz
201113-09:49:26,103 nipype.interface INFO:
stderr 2020-11-13T09:49:26.103492:++ applying mask to original data
201113-09:49:26,104 nipype.interface INFO:
stderr 2020-11-13T09:49:26.104150:++ Writing masked data
201113-09:49:26,114 nipype.interface INFO:
stderr 2020-11-13T09:49:26.114281:++ Output dataset ./uni_masked.nii.gz
201113-09:49:26,114 nipype.interface INFO:
stderr 2020-11-13T09:49:26.114617:++ CPU time = 0.000000 sec
201113-09:49:26,304 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:49:26,305 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks".
201113-09:49:26,311 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:49:26,750 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:49:26,751 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/cal_DVARS".
201113-09:49:26,758 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201113-09:49:27,225 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201113-09:49:27,227 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_extract_brain".
201113-09:49:27,234 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt/sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:49:27,477 nipype.interface INFO:
stderr 2020-11-13T09:49:27.477599:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:49:27,477 nipype.interface INFO:
stderr 2020-11-13T09:49:27.477944:++ Authored by: A cast of thousands
201113-09:49:28,987 nipype.interface INFO:
stderr 2020-11-13T09:49:28.987847:++ Output dataset ./sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:49:29,202 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:49:29,204 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize".
201113-09:49:29,210 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_extract_brain/sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201113-09:49:30,456 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:49:30,458 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mask_normalize".
201113-09:49:30,463 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mask_normalize/sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:49:31,257 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:49:31,259 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean".
201113-09:49:31,264 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean/sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:49:31,514 nipype.interface INFO:
stderr 2020-11-13T09:49:31.514280:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:49:31,514 nipype.interface INFO:
stderr 2020-11-13T09:49:31.514628:++ Authored by: KR Hammett & RW Cox
201113-09:49:31,686 nipype.interface INFO:
stderr 2020-11-13T09:49:31.686823:++ Output dataset ./sub-128_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201113-09:49:31,879 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:49:31,881 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/norm_motion_params".
201113-09:49:31,886 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:49:32,119 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:49:32,121 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-2/qc_motion_0/_scan_rest_run-1/motion_plot".
201113-09:49:32,125 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201113-09:49:32,577 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.qc_motion_0.motion_plot".
201113-09:49:32,578 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/sinker_0_qc___movement_trans_plot".
201113-09:49:32,585 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:49:32,798 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc___movement_trans_plot/_scan_rest_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc/movement_trans_plot/_scan_rest_run-1/motion_trans_plot.png
201113-09:49:32,815 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_trans_plot".
201113-09:49:32,816 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/sinker_0_qc___movement_rot_plot".
201113-09:49:32,823 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:49:33,32 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc___movement_rot_plot/_scan_rest_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc/movement_rot_plot/_scan_rest_run-1/motion_rot_plot.png
201113-09:49:33,50 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_rot_plot".
201113-09:49:33,52 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/calc_motion_parameters".
201113-09:49:33,58 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:49:33,290 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201113-09:49:33,292 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/sinker_0_motion_params".
201113-09:49:33,297 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:49:33,528 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_motion_params".
201113-09:49:33,530 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/calculate_FD".
201113-09:49:33,535 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201113-09:49:33,769 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201113-09:49:33,771 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/sinker_0_frame_wise_displacement_power".
201113-09:49:33,778 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:49:34,9 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_power".
201113-09:49:34,11 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/calc_power_parameters".
201113-09:49:34,18 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:49:34,250 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201113-09:49:34,252 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/sinker_0_power_params".
201113-09:49:34,259 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:49:34,491 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_power_params".
201113-09:49:34,493 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/sinker_0_movement_parameters".
201113-09:49:34,500 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:49:34,730 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_movement_parameters".
201113-09:49:34,732 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/func_despiked_0".
201113-09:49:34,737 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-128_ses-2_task-rest_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/func_despiked_0/sub-128_ses-2_task-rest_run-1_bold_calc.nii.gz
201113-09:49:34,992 nipype.interface INFO:
stderr 2020-11-13T09:49:34.992298:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:49:34,992 nipype.interface INFO:
stderr 2020-11-13T09:49:34.992925:++ Authored by: RW Cox
201113-09:49:34,994 nipype.interface INFO:
stderr 2020-11-13T09:49:34.994798:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:49:34,994 nipype.interface INFO:
stderr 2020-11-13T09:49:34.994798: such as /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/func_despiked_0/sub-128_ses-2_task-rest_run-1_bold_calc.nii.gz,
201113-09:49:34,995 nipype.interface INFO:
stderr 2020-11-13T09:49:34.994798: or viewing/combining it with volumes of differing obliquity,
201113-09:49:34,995 nipype.interface INFO:
stderr 2020-11-13T09:49:34.994798: you should consider running:
201113-09:49:34,995 nipype.interface INFO:
stderr 2020-11-13T09:49:34.994798: 3dWarp -deoblique
201113-09:49:34,995 nipype.interface INFO:
stderr 2020-11-13T09:49:34.994798: on this and other oblique datasets in the same session.
201113-09:49:34,995 nipype.interface INFO:
stderr 2020-11-13T09:49:34.994798: See 3dWarp -help for details.
201113-09:49:34,995 nipype.interface INFO:
stderr 2020-11-13T09:49:34.995629:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/func_despiked_0/sub-128_ses-2_task-rest_run-1_bold_calc.nii.gz is 19.900011 degrees from plumb.
201113-09:49:34,995 nipype.interface INFO:
stderr 2020-11-13T09:49:34.995809:++ Input dataset is in short format, but output will be in float format
201113-09:49:34,995 nipype.interface INFO:
stderr 2020-11-13T09:49:34.995974:++ ignoring first 0 time points, using last 81
201113-09:49:34,996 nipype.interface INFO:
stderr 2020-11-13T09:49:34.996138:++ using 81 time points => -corder 3
201113-09:49:34,996 nipype.interface INFO:
stderr 2020-11-13T09:49:34.996297:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/func_despiked_0/sub-128_ses-2_task-rest_run-1_bold_calc.nii.gz
201113-09:49:35,264 nipype.interface INFO:
stderr 2020-11-13T09:49:35.264341:++ 19415 voxels in the automask [out of 135168 in dataset]
201113-09:49:35,270 nipype.interface INFO:
stderr 2020-11-13T09:49:35.270229:++ 37478 voxels in the dilated automask [out of 135168 in dataset]
201113-09:49:35,277 nipype.interface INFO:
stderr 2020-11-13T09:49:35.277093:++ Procesing time series with OLD model fit algorithm
201113-09:49:35,277 nipype.interface INFO:
stderr 2020-11-13T09:49:35.277274:++ smash edit thresholds: 3.1 .. 5.0 MADs
201113-09:49:35,277 nipype.interface INFO:
stderr 2020-11-13T09:49:35.277453: + [ 3.457% .. 0.072% of normal distribution]
201113-09:49:35,277 nipype.interface INFO:
stderr 2020-11-13T09:49:35.277608: + [ 8.839% .. 3.125% of Laplace distribution]
201113-09:49:35,277 nipype.interface INFO:
stderr 2020-11-13T09:49:35.277767:++ start OpenMP thread #0
201113-09:49:37,160 nipype.interface INFO:
stderr 2020-11-13T09:49:37.160500:...................
201113-09:49:37,161 nipype.interface INFO:
stderr 2020-11-13T09:49:37.160981:++ Elapsed despike time = 1s 883ms
201113-09:49:37,161 nipype.interface INFO:
stderr 2020-11-13T09:49:37.161139:
201113-09:49:37,161 nipype.interface INFO:
stderr 2020-11-13T09:49:37.161769:++ FINAL: 3035556 data points, 330547 edits [10.889%], 140209 big edits [4.619%]
201113-09:49:38,718 nipype.interface INFO:
stderr 2020-11-13T09:49:38.718528:++ Output dataset ./sub-128_ses-2_task-rest_run-1_bold_calc_despike.nii.gz
201113-09:49:38,945 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_despiked_0".
201113-09:49:38,946 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_rest_run-1/slice_timing".
201113-09:49:38,953 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:49:38,954 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_rest_run-1/slice_timing/sub-128_ses-2_task-rest_run-1_bold_calc_despike.nii.gz
201113-09:49:39,163 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:49:39,217 nipype.interface INFO:
stderr 2020-11-13T09:49:39.216924:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:49:39,221 nipype.interface INFO:
stderr 2020-11-13T09:49:39.221240:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:49:39,221 nipype.interface INFO:
stderr 2020-11-13T09:49:39.221240: such as /outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_rest_run-1/slice_timing/sub-128_ses-2_task-rest_run-1_bold_calc_despike.nii.gz,
201113-09:49:39,221 nipype.interface INFO:
stderr 2020-11-13T09:49:39.221240: or viewing/combining it with volumes of differing obliquity,
201113-09:49:39,221 nipype.interface INFO:
stderr 2020-11-13T09:49:39.221240: you should consider running:
201113-09:49:39,222 nipype.interface INFO:
stderr 2020-11-13T09:49:39.221240: 3dWarp -deoblique
201113-09:49:39,222 nipype.interface INFO:
stderr 2020-11-13T09:49:39.221240: on this and other oblique datasets in the same session.
201113-09:49:39,222 nipype.interface INFO:
stderr 2020-11-13T09:49:39.221240: See 3dWarp -help for details.
201113-09:49:39,222 nipype.interface INFO:
stderr 2020-11-13T09:49:39.222616:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_rest_run-1/slice_timing/sub-128_ses-2_task-rest_run-1_bold_calc_despike.nii.gz is 19.900011 degrees from plumb.
201113-09:49:41,812 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_slice_timing_correction_0.slice_timing".
201113-09:49:41,813 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique".
201113-09:49:41,839 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift.nii.gz
201113-09:49:42,91 nipype.interface INFO:
stderr 2020-11-13T09:49:42.091002:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:49:42,91 nipype.interface INFO:
stderr 2020-11-13T09:49:42.091388:++ Authored by: RW Cox
201113-09:49:42,93 nipype.interface INFO:
stderr 2020-11-13T09:49:42.093196:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift.nii.gz
201113-09:49:42,93 nipype.interface INFO:
stderr 2020-11-13T09:49:42.093795: + deoblique
201113-09:49:42,94 nipype.interface INFO:
stderr 2020-11-13T09:49:42.093983: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201113-09:49:43,111 nipype.interface INFO:
stderr 2020-11-13T09:49:43.111125:++ 3drefit processed 1 datasets
201113-09:49:43,324 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:49:43,326 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient".
201113-09:49:43,331 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift.nii.gz
201113-09:49:44,934 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:49:44,935 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI".
201113-09:49:44,941 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-09:49:45,189 nipype.interface INFO:
stderr 2020-11-13T09:49:45.189765:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:49:45,190 nipype.interface INFO:
stderr 2020-11-13T09:49:45.190127:++ Authored by: KR Hammett & RW Cox
201113-09:49:45,531 nipype.interface INFO:
stderr 2020-11-13T09:49:45.531676:++ Output dataset ./sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201113-09:49:45,722 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:49:45,723 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_generate_ref".
201113-09:49:45,730 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_generate_ref/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-09:49:45,981 nipype.interface INFO:
stderr 2020-11-13T09:49:45.981196:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:49:45,981 nipype.interface INFO:
stderr 2020-11-13T09:49:45.981551:++ Authored by: RW Cox
201113-09:49:45,988 nipype.interface INFO:
stderr 2020-11-13T09:49:45.988241:++ Coarse del was 10, replaced with 3
201113-09:50:50,192 nipype.interface INFO:
stderr 2020-11-13T09:50:50.191889:++ Max displacement in automask = 1.14 (mm) at sub-brick 16
201113-09:50:50,192 nipype.interface INFO:
stderr 2020-11-13T09:50:50.192468:++ Max delta displ in automask = 0.60 (mm) at sub-brick 4
201113-09:50:53,209 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:50:53,211 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion".
201113-09:50:53,217 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201113-09:50:53,479 nipype.interface INFO:
stderr 2020-11-13T09:50:53.479880:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:50:53,480 nipype.interface INFO:
stderr 2020-11-13T09:50:53.480456:++ Authored by: KR Hammett & RW Cox
201113-09:50:53,966 nipype.interface INFO:
stderr 2020-11-13T09:50:53.966314:++ Output dataset ./sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201113-09:50:54,160 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:50:54,161 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt".
201113-09:50:54,168 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:51:13,195 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:51:13,202 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/sinker_0_motion_correct".
201113-09:51:13,211 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:51:13,439 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_motion_correct".
201113-09:51:13,441 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull".
201113-09:51:13,448 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201113-09:51:13,704 nipype.interface INFO:
stderr 2020-11-13T09:51:13.704821:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:51:13,705 nipype.interface INFO:
stderr 2020-11-13T09:51:13.705203:++ Authored by: KR Hammett & RW Cox
201113-09:51:14,70 nipype.interface INFO:
stderr 2020-11-13T09:51:14.069945:++ Output dataset ./sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201113-09:51:14,263 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:51:14,264 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass".
201113-09:51:14,270 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:51:16,118 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:51:16,120 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate".
201113-09:51:16,125 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:51:16,695 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:51:16,696 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_mask".
201113-09:51:16,702 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_mask/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:51:17,153 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:51:17,155 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/unifize".
201113-09:51:17,162 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/unifize/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:51:17,410 nipype.interface INFO:
stderr 2020-11-13T09:51:17.410922:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:52:11,624 nipype.interface INFO:
stderr 2020-11-13T09:52:11.624135: + Pre-processing: IAV..UW[s2841]Im
201113-09:52:11,636 nipype.interface INFO:
stderr 2020-11-13T09:52:11.636201:++ Output dataset ./uni.nii.gz
201113-09:52:11,636 nipype.interface INFO:
stderr 2020-11-13T09:52:11.636630:++ ===== Elapsed = 54.2 sec
201113-09:52:11,853 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:52:11,854 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass".
201113-09:52:11,860 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:52:12,106 nipype.interface INFO:
stderr 2020-11-13T09:52:12.106928:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:52:12,107 nipype.interface INFO:
stderr 2020-11-13T09:52:12.107269:++ Authored by: Emperor Zhark
201113-09:52:12,109 nipype.interface INFO:
stderr 2020-11-13T09:52:12.109036:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:52:12,112 nipype.interface INFO:
stderr 2020-11-13T09:52:12.112161:++ Forming automask
201113-09:52:12,113 nipype.interface INFO:
stderr 2020-11-13T09:52:12.113424: + Fixed clip level = 441.279144
201113-09:52:12,116 nipype.interface INFO:
stderr 2020-11-13T09:52:12.116570: + Used gradual clip level = 405.721497 .. 492.935638
201113-09:52:12,116 nipype.interface INFO:
stderr 2020-11-13T09:52:12.116771: + Number voxels above clip level = 17139
201113-09:52:12,116 nipype.interface INFO:
stderr 2020-11-13T09:52:12.116924: + Clustering voxels ...
201113-09:52:12,118 nipype.interface INFO:
stderr 2020-11-13T09:52:12.118002: + Largest cluster has 17136 voxels
201113-09:52:12,119 nipype.interface INFO:
stderr 2020-11-13T09:52:12.119091: + Clustering voxels ...
201113-09:52:12,119 nipype.interface INFO:
stderr 2020-11-13T09:52:12.119897: + Largest cluster has 16760 voxels
201113-09:52:12,123 nipype.interface INFO:
stderr 2020-11-13T09:52:12.123145: + Filled 380 voxels in small holes; now have 17140 voxels
201113-09:52:12,125 nipype.interface INFO:
stderr 2020-11-13T09:52:12.125070: + Clustering voxels ...
201113-09:52:12,125 nipype.interface INFO:
stderr 2020-11-13T09:52:12.125882: + Largest cluster has 17140 voxels
201113-09:52:12,126 nipype.interface INFO:
stderr 2020-11-13T09:52:12.126107: + Clustering non-brain voxels ...
201113-09:52:12,126 nipype.interface INFO:
stderr 2020-11-13T09:52:12.126249: + Clustering voxels ...
201113-09:52:12,129 nipype.interface INFO:
stderr 2020-11-13T09:52:12.129328: + Largest cluster has 118004 voxels
201113-09:52:12,129 nipype.interface INFO:
stderr 2020-11-13T09:52:12.129661: + Mask now has 17164 voxels
201113-09:52:12,129 nipype.interface INFO:
stderr 2020-11-13T09:52:12.129812:++ Dilating automask
201113-09:52:12,134 nipype.interface INFO:
stderr 2020-11-13T09:52:12.134863: + Clustering voxels ...
201113-09:52:12,137 nipype.interface INFO:
stderr 2020-11-13T09:52:12.137416: + Largest cluster has 113908 voxels
201113-09:52:12,137 nipype.interface INFO:
stderr 2020-11-13T09:52:12.137743:++ 21260 voxels in the mask [out of 135168: 15.73%]
201113-09:52:12,137 nipype.interface INFO:
stderr 2020-11-13T09:52:12.137918:++ first 13 x-planes are zero [from R]
201113-09:52:12,138 nipype.interface INFO:
stderr 2020-11-13T09:52:12.138084:++ last 12 x-planes are zero [from L]
201113-09:52:12,138 nipype.interface INFO:
stderr 2020-11-13T09:52:12.138232:++ first 8 y-planes are zero [from P]
201113-09:52:12,138 nipype.interface INFO:
stderr 2020-11-13T09:52:12.138384:++ last 8 y-planes are zero [from A]
201113-09:52:12,138 nipype.interface INFO:
stderr 2020-11-13T09:52:12.138523:++ first 0 z-planes are zero [from I]
201113-09:52:12,138 nipype.interface INFO:
stderr 2020-11-13T09:52:12.138671:++ last 5 z-planes are zero [from S]
201113-09:52:12,142 nipype.interface INFO:
stderr 2020-11-13T09:52:12.142127:++ Output dataset ./uni_mask.nii.gz
201113-09:52:12,142 nipype.interface INFO:
stderr 2020-11-13T09:52:12.142299:++ applying mask to original data
201113-09:52:12,142 nipype.interface INFO:
stderr 2020-11-13T09:52:12.142953:++ Writing masked data
201113-09:52:12,152 nipype.interface INFO:
stderr 2020-11-13T09:52:12.152265:++ Output dataset ./uni_masked.nii.gz
201113-09:52:12,152 nipype.interface INFO:
stderr 2020-11-13T09:52:12.152592:++ CPU time = 0.000000 sec
201113-09:52:12,344 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:52:12,345 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks".
201113-09:52:12,351 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:52:12,793 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:52:12,794 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201113-09:52:12,798 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-09:52:13,28 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201113-09:52:13,31 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201113-09:52:13,40 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:52:13,294 nipype.interface INFO:
stderr 2020-11-13T09:52:13.294388:++ no -frac option: defaulting to -union
201113-09:52:13,295 nipype.interface INFO:
stderr 2020-11-13T09:52:13.295002:++ processing 1 input dataset(s), NN=2...
201113-09:52:13,295 nipype.interface INFO:
stderr 2020-11-13T09:52:13.295178:++ padding all datasets by 0 (for dilations)
201113-09:52:13,299 nipype.interface INFO:
stderr 2020-11-13T09:52:13.299889:++ frac 0 over 1 volumes gives min count 0
201113-09:52:13,300 nipype.interface INFO:
stderr 2020-11-13T09:52:13.300263:++ voxel limits: 0 clipped, 21233 survived, 113935 were zero
201113-09:52:13,300 nipype.interface INFO:
stderr 2020-11-13T09:52:13.300652:++ writing result sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201113-09:52:13,304 nipype.interface INFO:
stderr 2020-11-13T09:52:13.304643:++ Output dataset ./sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201113-09:52:13,494 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201113-09:52:13,496 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/sinker_0_functional_brain_mask".
201113-09:52:13,504 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:52:13,730 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_functional_brain_mask".
201113-09:52:13,732 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/functional_brain_mask_derivative_0".
201113-09:52:13,736 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201113-09:52:13,948 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201113-09:52:13,953 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:52:14,504 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201113-09:52:14,521 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.functional_brain_mask_derivative_0".
201113-09:52:14,523 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_extract_brain".
201113-09:52:14,531 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:52:14,783 nipype.interface INFO:
stderr 2020-11-13T09:52:14.783049:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:52:14,783 nipype.interface INFO:
stderr 2020-11-13T09:52:14.783448:++ Authored by: A cast of thousands
201113-09:52:16,405 nipype.interface INFO:
stderr 2020-11-13T09:52:16.405732:++ Output dataset ./sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:52:16,593 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:52:16,595 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize".
201113-09:52:16,600 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_extract_brain/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201113-09:52:17,922 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:52:17,923 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201113-09:52:17,928 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:52:18,660 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201113-09:52:18,661 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201113-09:52:18,666 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:52:18,926 nipype.interface INFO:
stderr 2020-11-13T09:52:18.925987:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:52:18,926 nipype.interface INFO:
stderr 2020-11-13T09:52:18.926346:++ Authored by: KR Hammett & RW Cox
201113-09:52:19,257 nipype.interface INFO:
stderr 2020-11-13T09:52:19.256947:++ Output dataset ./sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:52:19,451 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.functional_mean".
201113-09:52:19,453 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-128_ses-2/qc_snr_0/_scan_rest_run-1/std_dev".
201113-09:52:19,459 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/qc_snr_0/_scan_rest_run-1/std_dev/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:52:19,712 nipype.interface INFO:
stderr 2020-11-13T09:52:19.712147:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:52:19,712 nipype.interface INFO:
stderr 2020-11-13T09:52:19.712741:++ Authored by: KR Hammett & RW Cox
201113-09:52:20,11 nipype.interface INFO:
stderr 2020-11-13T09:52:20.011290:++ Output dataset ./sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:52:20,206 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.qc_snr_0.std_dev".
201113-09:52:20,208 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/sinker_0_functional_preprocessed".
201113-09:52:20,215 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:52:20,445 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed".
201113-09:52:20,447 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mask_normalize".
201113-09:52:20,452 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mask_normalize/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:52:21,253 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:52:21,254 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/sinker_0_functional_preprocessed_mask".
201113-09:52:21,261 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:52:21,491 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed_mask".
201113-09:52:21,493 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean".
201113-09:52:21,499 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean/sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:52:21,753 nipype.interface INFO:
stderr 2020-11-13T09:52:21.753265:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:52:21,753 nipype.interface INFO:
stderr 2020-11-13T09:52:21.753658:++ Authored by: KR Hammett & RW Cox
201113-09:52:22,72 nipype.interface INFO:
stderr 2020-11-13T09:52:22.072782:++ Output dataset ./sub-128_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201113-09:52:22,267 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:52:22,269 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/sinker_0_mean_functional".
201113-09:52:22,277 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:52:22,507 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_mean_functional".
201113-09:52:22,509 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/norm_motion_params".
201113-09:52:22,514 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:52:22,743 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:52:22,744 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/sinker_0_slice_time_corrected".
201113-09:52:22,750 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:52:22,978 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_slice_time_corrected".
201113-09:52:22,979 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_rest_run-1/sinker_0_raw_functional".
201113-09:52:22,987 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:52:23,301 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_raw_functional".
201113-09:52:23,303 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_rest_run-1/check_func_scan".
201113-09:52:23,342 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201113-09:52:23,575 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.check_func_scan".
201113-09:52:23,587 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_depletion_run-2/select_scan_params".
201113-09:52:23,619 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:52:23,853 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.select_scan_params".
201113-09:52:23,863 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_depletion_run-2/s3_scan_params".
201113-09:52:23,871 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:52:24,101 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.s3_scan_params".
201113-09:52:24,104 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/scan_params_0".
201113-09:52:24,112 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-09:52:24,339 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.scan_params_0".
201113-09:52:24,341 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_depletion_run-2/selectrest".
201113-09:52:24,375 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-09:52:24,609 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.selectrest".
201113-09:52:24,621 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_depletion_run-2/check_for_s3".
201113-09:52:24,625 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-09:52:24,909 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.check_for_s3".
201113-09:52:24,911 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-128_ses-2/edit_func_0/_scan_depletion_run-2/func_get_idx".
201113-09:52:24,916 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-09:52:25,150 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.edit_func_0.func_get_idx".
201113-09:52:25,152 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-128_ses-2/edit_func_0/_scan_depletion_run-2/func_drop_trs".
201113-09:52:25,159 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-128/ses-2/func/sub-128_ses-2_task-depletion_run-2_bold.nii.gz[0..126] -expr "a" -prefix sub-128_ses-2_task-depletion_run-2_bold_calc.nii.gz
201113-09:52:25,417 nipype.interface INFO:
stderr 2020-11-13T09:52:25.417756:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:52:25,418 nipype.interface INFO:
stderr 2020-11-13T09:52:25.418181:++ Authored by: A cast of thousands
201113-09:52:31,366 nipype.interface INFO:
stderr 2020-11-13T09:52:31.366160:++ Output dataset ./sub-128_ses-2_task-depletion_run-2_bold_calc.nii.gz
201113-09:52:31,567 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.edit_func_0.func_drop_trs".
201113-09:52:31,568 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique".
201113-09:52:31,612 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-128_ses-2_task-depletion_run-2_bold_calc.nii.gz
201113-09:52:31,862 nipype.interface INFO:
stderr 2020-11-13T09:52:31.862607:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:52:31,863 nipype.interface INFO:
stderr 2020-11-13T09:52:31.862993:++ Authored by: RW Cox
201113-09:52:31,872 nipype.interface INFO:
stderr 2020-11-13T09:52:31.872931:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-128_ses-2_task-depletion_run-2_bold_calc.nii.gz
201113-09:52:31,873 nipype.interface INFO:
stderr 2020-11-13T09:52:31.873826: + deoblique
201113-09:52:31,874 nipype.interface INFO:
stderr 2020-11-13T09:52:31.874099: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-128_ses-2_task-depletion_run-2_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-128_ses-2_task-depletion_run-2_bold_calc.nii.gz in NIFTI storage)
201113-09:52:35,584 nipype.interface INFO:
stderr 2020-11-13T09:52:35.584200:++ 3drefit processed 1 datasets
201113-09:52:35,804 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:52:35,805 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient".
201113-09:52:35,812 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-2_task-depletion_run-2_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient/sub-128_ses-2_task-depletion_run-2_bold_calc.nii.gz
201113-09:52:40,164 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:52:40,165 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI".
201113-09:52:40,172 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-depletion_run-2_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI/sub-128_ses-2_task-depletion_run-2_bold_calc_resample.nii.gz
201113-09:52:40,426 nipype.interface INFO:
stderr 2020-11-13T09:52:40.426622:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:52:40,427 nipype.interface INFO:
stderr 2020-11-13T09:52:40.427081:++ Authored by: KR Hammett & RW Cox
201113-09:52:40,884 nipype.interface INFO:
stderr 2020-11-13T09:52:40.884435:++ Output dataset ./sub-128_ses-2_task-depletion_run-2_bold_calc_resample_tstat.nii.gz
201113-09:52:41,76 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:52:41,78 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_generate_ref".
201113-09:52:41,86 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-2_task-depletion_run-2_bold_calc_resample.1D -1Dmatrix_save sub-128_ses-2_task-depletion_run-2_bold_calc_resample.aff12.1D -prefix sub-128_ses-2_task-depletion_run-2_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI/sub-128_ses-2_task-depletion_run-2_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-2_task-depletion_run-2_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_generate_ref/sub-128_ses-2_task-depletion_run-2_bold_calc_resample.nii.gz
201113-09:52:41,340 nipype.interface INFO:
stderr 2020-11-13T09:52:41.340875:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:52:41,341 nipype.interface INFO:
stderr 2020-11-13T09:52:41.341243:++ Authored by: RW Cox
201113-09:52:41,351 nipype.interface INFO:
stderr 2020-11-13T09:52:41.351747:++ Coarse del was 10, replaced with 3
201113-09:54:26,629 nipype.interface INFO:
stderr 2020-11-13T09:54:26.629691:++ Max displacement in automask = 1.08 (mm) at sub-brick 126
201113-09:54:26,630 nipype.interface INFO:
stderr 2020-11-13T09:54:26.630156:++ Max delta displ in automask = 0.72 (mm) at sub-brick 126
201113-09:54:30,308 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:54:30,310 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion".
201113-09:54:30,317 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-depletion_run-2_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion/sub-128_ses-2_task-depletion_run-2_bold_calc_resample_volreg.nii.gz
201113-09:54:30,572 nipype.interface INFO:
stderr 2020-11-13T09:54:30.572221:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:54:30,572 nipype.interface INFO:
stderr 2020-11-13T09:54:30.572670:++ Authored by: KR Hammett & RW Cox
201113-09:54:31,35 nipype.interface INFO:
stderr 2020-11-13T09:54:31.035694:++ Output dataset ./sub-128_ses-2_task-depletion_run-2_bold_calc_resample_volreg_tstat.nii.gz
201113-09:54:31,227 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:54:31,228 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt".
201113-09:54:31,235 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient/sub-128_ses-2_task-depletion_run-2_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt/sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion/sub-128_ses-2_task-depletion_run-2_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:54:54,590 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:54:54,598 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/calculate_FDJ".
201113-09:54:54,604 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201113-09:54:54,829 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201113-09:54:54,830 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/sinker_0_frame_wise_displacement_jenkinson".
201113-09:54:54,836 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:54:55,66 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201113-09:54:55,68 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/sinker_0_max_displacement".
201113-09:54:55,76 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:54:55,307 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_max_displacement".
201113-09:54:55,309 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/sinker_0_coordinate_transformation".
201113-09:54:55,326 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:54:55,592 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_coordinate_transformation".
201113-09:54:55,602 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull".
201113-09:54:55,609 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull/sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf.nii.gz
201113-09:54:55,868 nipype.interface INFO:
stderr 2020-11-13T09:54:55.868678:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:54:55,869 nipype.interface INFO:
stderr 2020-11-13T09:54:55.869064:++ Authored by: KR Hammett & RW Cox
201113-09:54:56,366 nipype.interface INFO:
stderr 2020-11-13T09:54:56.365977:++ Output dataset ./sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat.nii.gz
201113-09:54:56,559 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:54:56,560 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass".
201113-09:54:56,566 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull/sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:54:58,407 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:54:58,409 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate".
201113-09:54:58,414 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate/sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:54:59,121 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:54:59,122 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_mask".
201113-09:54:59,129 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate/sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_mask/sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:54:59,587 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:54:59,589 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/unifize".
201113-09:54:59,596 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/unifize/sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:54:59,854 nipype.interface INFO:
stderr 2020-11-13T09:54:59.854054:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:56:13,246 nipype.interface INFO:
stderr 2020-11-13T09:56:13.246860: + Pre-processing: IAV..UW[s3855]Im
201113-09:56:13,260 nipype.interface INFO:
stderr 2020-11-13T09:56:13.260669:++ Output dataset ./uni.nii.gz
201113-09:56:13,260 nipype.interface INFO:
stderr 2020-11-13T09:56:13.260950:++ ===== Elapsed = 73.4 sec
201113-09:56:13,481 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:56:13,482 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass".
201113-09:56:13,488 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni.nii.gz
201113-09:56:13,741 nipype.interface INFO:
stderr 2020-11-13T09:56:13.741181:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:56:13,742 nipype.interface INFO:
stderr 2020-11-13T09:56:13.741999:++ Authored by: Emperor Zhark
201113-09:56:13,744 nipype.interface INFO:
stderr 2020-11-13T09:56:13.744672:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni.nii.gz
201113-09:56:13,749 nipype.interface INFO:
stderr 2020-11-13T09:56:13.749825:++ Forming automask
201113-09:56:13,751 nipype.interface INFO:
stderr 2020-11-13T09:56:13.751559: + Fixed clip level = 402.547638
201113-09:56:13,755 nipype.interface INFO:
stderr 2020-11-13T09:56:13.755787: + Used gradual clip level = 368.244965 .. 475.033936
201113-09:56:13,756 nipype.interface INFO:
stderr 2020-11-13T09:56:13.756040: + Number voxels above clip level = 29877
201113-09:56:13,756 nipype.interface INFO:
stderr 2020-11-13T09:56:13.756233: + Clustering voxels ...
201113-09:56:13,757 nipype.interface INFO:
stderr 2020-11-13T09:56:13.757863: + Largest cluster has 29874 voxels
201113-09:56:13,759 nipype.interface INFO:
stderr 2020-11-13T09:56:13.759232: + Clustering voxels ...
201113-09:56:13,760 nipype.interface INFO:
stderr 2020-11-13T09:56:13.760335: + Largest cluster has 29458 voxels
201113-09:56:13,763 nipype.interface INFO:
stderr 2020-11-13T09:56:13.763938: + Filled 600 voxels in small holes; now have 30058 voxels
201113-09:56:13,767 nipype.interface INFO:
stderr 2020-11-13T09:56:13.767168: + Filled 8 voxels in large holes; now have 30066 voxels
201113-09:56:13,768 nipype.interface INFO:
stderr 2020-11-13T09:56:13.768429: + Clustering voxels ...
201113-09:56:13,769 nipype.interface INFO:
stderr 2020-11-13T09:56:13.769518: + Largest cluster has 30064 voxels
201113-09:56:13,769 nipype.interface INFO:
stderr 2020-11-13T09:56:13.769747: + Clustering non-brain voxels ...
201113-09:56:13,769 nipype.interface INFO:
stderr 2020-11-13T09:56:13.769890: + Clustering voxels ...
201113-09:56:13,772 nipype.interface INFO:
stderr 2020-11-13T09:56:13.772761: + Largest cluster has 109182 voxels
201113-09:56:13,773 nipype.interface INFO:
stderr 2020-11-13T09:56:13.773091: + Mask now has 30082 voxels
201113-09:56:13,773 nipype.interface INFO:
stderr 2020-11-13T09:56:13.773243:++ Dilating automask
201113-09:56:13,781 nipype.interface INFO:
stderr 2020-11-13T09:56:13.781901: + Clustering voxels ...
201113-09:56:13,784 nipype.interface INFO:
stderr 2020-11-13T09:56:13.784306: + Largest cluster has 103218 voxels
201113-09:56:13,784 nipype.interface INFO:
stderr 2020-11-13T09:56:13.784646:++ 36046 voxels in the mask [out of 139264: 25.88%]
201113-09:56:13,784 nipype.interface INFO:
stderr 2020-11-13T09:56:13.784821:++ first 9 x-planes are zero [from R]
201113-09:56:13,785 nipype.interface INFO:
stderr 2020-11-13T09:56:13.784986:++ last 9 x-planes are zero [from L]
201113-09:56:13,785 nipype.interface INFO:
stderr 2020-11-13T09:56:13.785129:++ first 5 y-planes are zero [from P]
201113-09:56:13,785 nipype.interface INFO:
stderr 2020-11-13T09:56:13.785271:++ last 4 y-planes are zero [from A]
201113-09:56:13,785 nipype.interface INFO:
stderr 2020-11-13T09:56:13.785411:++ first 0 z-planes are zero [from I]
201113-09:56:13,785 nipype.interface INFO:
stderr 2020-11-13T09:56:13.785557:++ last 3 z-planes are zero [from S]
201113-09:56:13,789 nipype.interface INFO:
stderr 2020-11-13T09:56:13.789883:++ Output dataset ./uni_mask.nii.gz
201113-09:56:13,790 nipype.interface INFO:
stderr 2020-11-13T09:56:13.790098:++ applying mask to original data
201113-09:56:13,790 nipype.interface INFO:
stderr 2020-11-13T09:56:13.790959:++ Writing masked data
201113-09:56:13,805 nipype.interface INFO:
stderr 2020-11-13T09:56:13.805077:++ Output dataset ./uni_masked.nii.gz
201113-09:56:13,805 nipype.interface INFO:
stderr 2020-11-13T09:56:13.805398:++ CPU time = 0.000000 sec
201113-09:56:13,996 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:56:13,997 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks".
201113-09:56:14,3 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks/sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:56:14,442 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:56:14,443 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/cal_DVARS".
201113-09:56:14,448 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201113-09:56:15,122 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201113-09:56:15,124 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_extract_brain".
201113-09:56:15,131 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt/sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks/sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-09:56:15,378 nipype.interface INFO:
stderr 2020-11-13T09:56:15.378861:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:56:15,379 nipype.interface INFO:
stderr 2020-11-13T09:56:15.379192:++ Authored by: A cast of thousands
201113-09:56:18,95 nipype.interface INFO:
stderr 2020-11-13T09:56:18.095716:++ Output dataset ./sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-09:56:18,316 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:56:18,317 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize".
201113-09:56:18,322 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_extract_brain/sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize/sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201113-09:56:20,425 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:56:20,426 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mask_normalize".
201113-09:56:20,433 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize/sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mask_normalize/sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:56:21,470 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:56:21,471 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mean".
201113-09:56:21,477 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mean/sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-09:56:21,730 nipype.interface INFO:
stderr 2020-11-13T09:56:21.730342:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:56:21,731 nipype.interface INFO:
stderr 2020-11-13T09:56:21.731073:++ Authored by: KR Hammett & RW Cox
201113-09:56:22,31 nipype.interface INFO:
stderr 2020-11-13T09:56:22.031436:++ Output dataset ./sub-128_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz
201113-09:56:22,255 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:56:22,256 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/norm_motion_params".
201113-09:56:22,262 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:56:22,492 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:56:22,493 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-2/qc_motion_0/_scan_depletion_run-2/motion_plot".
201113-09:56:22,497 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201113-09:56:22,932 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.qc_motion_0.motion_plot".
201113-09:56:22,933 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/sinker_0_qc___movement_trans_plot".
201113-09:56:22,940 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:56:23,154 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc___movement_trans_plot/_scan_depletion_run-2/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc/movement_trans_plot/_scan_depletion_run-2/motion_trans_plot.png
201113-09:56:23,175 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_trans_plot".
201113-09:56:23,176 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/sinker_0_qc___movement_rot_plot".
201113-09:56:23,183 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:56:23,394 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc___movement_rot_plot/_scan_depletion_run-2/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-128_ses-2/qc/movement_rot_plot/_scan_depletion_run-2/motion_rot_plot.png
201113-09:56:23,412 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_qc___movement_rot_plot".
201113-09:56:23,414 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/calc_motion_parameters".
201113-09:56:23,420 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:56:23,651 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201113-09:56:23,652 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/sinker_0_motion_params".
201113-09:56:23,658 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:56:23,887 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_motion_params".
201113-09:56:23,889 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/calculate_FD".
201113-09:56:23,893 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201113-09:56:24,122 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201113-09:56:24,123 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/sinker_0_frame_wise_displacement_power".
201113-09:56:24,131 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:56:24,363 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_power".
201113-09:56:24,365 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/calc_power_parameters".
201113-09:56:24,370 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:56:24,601 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201113-09:56:24,603 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/sinker_0_power_params".
201113-09:56:24,609 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:56:24,841 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_power_params".
201113-09:56:24,842 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/sinker_0_movement_parameters".
201113-09:56:24,850 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:56:25,80 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_movement_parameters".
201113-09:56:25,82 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/func_despiked_0".
201113-09:56:25,88 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-128_ses-2_task-depletion_run-2_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/func_despiked_0/sub-128_ses-2_task-depletion_run-2_bold_calc.nii.gz
201113-09:56:25,348 nipype.interface INFO:
stderr 2020-11-13T09:56:25.348850:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:56:25,349 nipype.interface INFO:
stderr 2020-11-13T09:56:25.349274:++ Authored by: RW Cox
201113-09:56:25,352 nipype.interface INFO:
stderr 2020-11-13T09:56:25.352733:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:56:25,353 nipype.interface INFO:
stderr 2020-11-13T09:56:25.352733: such as /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/func_despiked_0/sub-128_ses-2_task-depletion_run-2_bold_calc.nii.gz,
201113-09:56:25,353 nipype.interface INFO:
stderr 2020-11-13T09:56:25.352733: or viewing/combining it with volumes of differing obliquity,
201113-09:56:25,353 nipype.interface INFO:
stderr 2020-11-13T09:56:25.352733: you should consider running:
201113-09:56:25,353 nipype.interface INFO:
stderr 2020-11-13T09:56:25.352733: 3dWarp -deoblique
201113-09:56:25,353 nipype.interface INFO:
stderr 2020-11-13T09:56:25.352733: on this and other oblique datasets in the same session.
201113-09:56:25,353 nipype.interface INFO:
stderr 2020-11-13T09:56:25.352733: See 3dWarp -help for details.
201113-09:56:25,354 nipype.interface INFO:
stderr 2020-11-13T09:56:25.353986:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/func_despiked_0/sub-128_ses-2_task-depletion_run-2_bold_calc.nii.gz is 19.900011 degrees from plumb.
201113-09:56:25,354 nipype.interface INFO:
stderr 2020-11-13T09:56:25.354256:++ Input dataset is in short format, but output will be in float format
201113-09:56:25,354 nipype.interface INFO:
stderr 2020-11-13T09:56:25.354517:++ ignoring first 0 time points, using last 127
201113-09:56:25,354 nipype.interface INFO:
stderr 2020-11-13T09:56:25.354764:++ using 127 time points => -corder 4
201113-09:56:25,355 nipype.interface INFO:
stderr 2020-11-13T09:56:25.355001:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/func_despiked_0/sub-128_ses-2_task-depletion_run-2_bold_calc.nii.gz
201113-09:56:25,806 nipype.interface INFO:
stderr 2020-11-13T09:56:25.806411:++ 33587 voxels in the automask [out of 139264 in dataset]
201113-09:56:25,811 nipype.interface INFO:
stderr 2020-11-13T09:56:25.811952:++ 57335 voxels in the dilated automask [out of 139264 in dataset]
201113-09:56:25,822 nipype.interface INFO:
stderr 2020-11-13T09:56:25.822553:++ Procesing time series with OLD model fit algorithm
201113-09:56:25,822 nipype.interface INFO:
stderr 2020-11-13T09:56:25.822735:++ smash edit thresholds: 3.1 .. 5.0 MADs
201113-09:56:25,822 nipype.interface INFO:
stderr 2020-11-13T09:56:25.822897: + [ 3.457% .. 0.072% of normal distribution]
201113-09:56:25,823 nipype.interface INFO:
stderr 2020-11-13T09:56:25.823050: + [ 8.839% .. 3.125% of Laplace distribution]
201113-09:56:25,823 nipype.interface INFO:
stderr 2020-11-13T09:56:25.823209:++ start OpenMP thread #0
201113-09:56:30,955 nipype.interface INFO:
stderr 2020-11-13T09:56:30.955061:...........................
201113-09:56:30,955 nipype.interface INFO:
stderr 2020-11-13T09:56:30.955376:++ Elapsed despike time = 5s 133ms
201113-09:56:30,955 nipype.interface INFO:
stderr 2020-11-13T09:56:30.955533:
201113-09:56:30,956 nipype.interface INFO:
stderr 2020-11-13T09:56:30.956392:++ FINAL: 7281545 data points, 500247 edits [6.870%], 79588 big edits [1.093%]
201113-09:56:34,844 nipype.interface INFO:
stderr 2020-11-13T09:56:34.844596:++ Output dataset ./sub-128_ses-2_task-depletion_run-2_bold_calc_despike.nii.gz
201113-09:56:35,50 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_despiked_0".
201113-09:56:35,51 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_depletion_run-2/slice_timing".
201113-09:56:35,59 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:56:35,60 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_depletion_run-2/slice_timing/sub-128_ses-2_task-depletion_run-2_bold_calc_despike.nii.gz
201113-09:56:35,271 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:56:35,312 nipype.interface INFO:
stderr 2020-11-13T09:56:35.312058:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:56:35,314 nipype.interface INFO:
stderr 2020-11-13T09:56:35.314666:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:56:35,314 nipype.interface INFO:
stderr 2020-11-13T09:56:35.314666: such as /outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_depletion_run-2/slice_timing/sub-128_ses-2_task-depletion_run-2_bold_calc_despike.nii.gz,
201113-09:56:35,314 nipype.interface INFO:
stderr 2020-11-13T09:56:35.314666: or viewing/combining it with volumes of differing obliquity,
201113-09:56:35,315 nipype.interface INFO:
stderr 2020-11-13T09:56:35.314666: you should consider running:
201113-09:56:35,315 nipype.interface INFO:
stderr 2020-11-13T09:56:35.314666: 3dWarp -deoblique
201113-09:56:35,315 nipype.interface INFO:
stderr 2020-11-13T09:56:35.314666: on this and other oblique datasets in the same session.
201113-09:56:35,315 nipype.interface INFO:
stderr 2020-11-13T09:56:35.314666: See 3dWarp -help for details.
201113-09:56:35,315 nipype.interface INFO:
stderr 2020-11-13T09:56:35.315449:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-128_ses-2/func_slice_timing_correction_0/_scan_depletion_run-2/slice_timing/sub-128_ses-2_task-depletion_run-2_bold_calc_despike.nii.gz is 19.900011 degrees from plumb.
201113-09:56:39,564 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_slice_timing_correction_0.slice_timing".
201113-09:56:39,565 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique".
201113-09:56:39,617 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz
201113-09:56:39,866 nipype.interface INFO:
stderr 2020-11-13T09:56:39.866538:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:56:39,866 nipype.interface INFO:
stderr 2020-11-13T09:56:39.866892:++ Authored by: RW Cox
201113-09:56:39,876 nipype.interface INFO:
stderr 2020-11-13T09:56:39.876862:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz
201113-09:56:39,877 nipype.interface INFO:
stderr 2020-11-13T09:56:39.877956: + deoblique
201113-09:56:39,878 nipype.interface INFO:
stderr 2020-11-13T09:56:39.878178: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201113-09:56:41,953 nipype.interface INFO:
stderr 2020-11-13T09:56:41.953114:++ 3drefit processed 1 datasets
201113-09:56:42,143 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:56:42,144 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient".
201113-09:56:42,151 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz
201113-09:56:44,876 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:56:44,878 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI".
201113-09:56:44,883 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.nii.gz
201113-09:56:45,133 nipype.interface INFO:
stderr 2020-11-13T09:56:45.133862:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:56:45,134 nipype.interface INFO:
stderr 2020-11-13T09:56:45.134273:++ Authored by: KR Hammett & RW Cox
201113-09:56:45,727 nipype.interface INFO:
stderr 2020-11-13T09:56:45.727368:++ Output dataset ./sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz
201113-09:56:45,915 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:56:45,916 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_generate_ref".
201113-09:56:45,922 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_generate_ref/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.nii.gz
201113-09:56:46,171 nipype.interface INFO:
stderr 2020-11-13T09:56:46.171787:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:56:46,172 nipype.interface INFO:
stderr 2020-11-13T09:56:46.172111:++ Authored by: RW Cox
201113-09:56:46,182 nipype.interface INFO:
stderr 2020-11-13T09:56:46.182900:++ Coarse del was 10, replaced with 3
201113-09:58:31,612 nipype.interface INFO:
stderr 2020-11-13T09:58:31.612349:++ Max displacement in automask = 0.56 (mm) at sub-brick 66
201113-09:58:31,612 nipype.interface INFO:
stderr 2020-11-13T09:58:31.612863:++ Max delta displ in automask = 0.52 (mm) at sub-brick 66
201113-09:58:36,204 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:58:36,206 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion".
201113-09:58:36,212 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz
201113-09:58:36,464 nipype.interface INFO:
stderr 2020-11-13T09:58:36.464577:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:58:36,464 nipype.interface INFO:
stderr 2020-11-13T09:58:36.464905:++ Authored by: KR Hammett & RW Cox
201113-09:58:37,242 nipype.interface INFO:
stderr 2020-11-13T09:58:37.242608:++ Output dataset ./sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201113-09:58:37,448 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:58:37,449 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt".
201113-09:58:37,457 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:58:58,693 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:58:58,702 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/sinker_0_motion_correct".
201113-09:58:58,710 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:58:58,937 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_motion_correct".
201113-09:58:58,939 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull".
201113-09:58:58,946 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz
201113-09:58:59,201 nipype.interface INFO:
stderr 2020-11-13T09:58:59.201149:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:58:59,201 nipype.interface INFO:
stderr 2020-11-13T09:58:59.201759:++ Authored by: KR Hammett & RW Cox
201113-09:58:59,822 nipype.interface INFO:
stderr 2020-11-13T09:58:59.821924:++ Output dataset ./sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201113-09:59:00,17 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:59:00,19 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass".
201113-09:59:00,25 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:59:01,887 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:59:01,888 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate".
201113-09:59:01,894 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:59:02,573 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:59:02,574 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_mask".
201113-09:59:02,579 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_mask/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:59:03,31 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:59:03,32 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/unifize".
201113-09:59:03,38 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/unifize/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:59:03,291 nipype.interface INFO:
stderr 2020-11-13T09:59:03.291265:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-10:00:16,935 nipype.interface INFO:
stderr 2020-11-13T10:00:16.935418: + Pre-processing: IAV..UW[s3849]Im
201113-10:00:16,950 nipype.interface INFO:
stderr 2020-11-13T10:00:16.950616:++ Output dataset ./uni.nii.gz
201113-10:00:16,950 nipype.interface INFO:
stderr 2020-11-13T10:00:16.950833:++ ===== Elapsed = 73.7 sec
201113-10:00:17,163 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-10:00:17,165 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass".
201113-10:00:17,171 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni.nii.gz
201113-10:00:17,421 nipype.interface INFO:
stderr 2020-11-13T10:00:17.421122:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-10:00:17,421 nipype.interface INFO:
stderr 2020-11-13T10:00:17.421807:++ Authored by: Emperor Zhark
201113-10:00:17,424 nipype.interface INFO:
stderr 2020-11-13T10:00:17.424371:++ Loading dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni.nii.gz
201113-10:00:17,429 nipype.interface INFO:
stderr 2020-11-13T10:00:17.429613:++ Forming automask
201113-10:00:17,431 nipype.interface INFO:
stderr 2020-11-13T10:00:17.431524: + Fixed clip level = 402.563904
201113-10:00:17,436 nipype.interface INFO:
stderr 2020-11-13T10:00:17.436175: + Used gradual clip level = 368.806763 .. 474.600067
201113-10:00:17,436 nipype.interface INFO:
stderr 2020-11-13T10:00:17.436457: + Number voxels above clip level = 29881
201113-10:00:17,436 nipype.interface INFO:
stderr 2020-11-13T10:00:17.436667: + Clustering voxels ...
201113-10:00:17,438 nipype.interface INFO:
stderr 2020-11-13T10:00:17.438293: + Largest cluster has 29879 voxels
201113-10:00:17,439 nipype.interface INFO:
stderr 2020-11-13T10:00:17.439877: + Clustering voxels ...
201113-10:00:17,441 nipype.interface INFO:
stderr 2020-11-13T10:00:17.441005: + Largest cluster has 29460 voxels
201113-10:00:17,444 nipype.interface INFO:
stderr 2020-11-13T10:00:17.444387: + Filled 605 voxels in small holes; now have 30065 voxels
201113-10:00:17,447 nipype.interface INFO:
stderr 2020-11-13T10:00:17.447638: + Filled 8 voxels in large holes; now have 30073 voxels
201113-10:00:17,448 nipype.interface INFO:
stderr 2020-11-13T10:00:17.448909: + Clustering voxels ...
201113-10:00:17,450 nipype.interface INFO:
stderr 2020-11-13T10:00:17.449992: + Largest cluster has 30071 voxels
201113-10:00:17,450 nipype.interface INFO:
stderr 2020-11-13T10:00:17.450229: + Clustering non-brain voxels ...
201113-10:00:17,450 nipype.interface INFO:
stderr 2020-11-13T10:00:17.450387: + Clustering voxels ...
201113-10:00:17,453 nipype.interface INFO:
stderr 2020-11-13T10:00:17.453307: + Largest cluster has 109175 voxels
201113-10:00:17,453 nipype.interface INFO:
stderr 2020-11-13T10:00:17.453651: + Mask now has 30089 voxels
201113-10:00:17,453 nipype.interface INFO:
stderr 2020-11-13T10:00:17.453813:++ Dilating automask
201113-10:00:17,461 nipype.interface INFO:
stderr 2020-11-13T10:00:17.461626: + Clustering voxels ...
201113-10:00:17,464 nipype.interface INFO:
stderr 2020-11-13T10:00:17.464050: + Largest cluster has 103200 voxels
201113-10:00:17,464 nipype.interface INFO:
stderr 2020-11-13T10:00:17.464395:++ 36064 voxels in the mask [out of 139264: 25.90%]
201113-10:00:17,464 nipype.interface INFO:
stderr 2020-11-13T10:00:17.464572:++ first 9 x-planes are zero [from R]
201113-10:00:17,464 nipype.interface INFO:
stderr 2020-11-13T10:00:17.464738:++ last 9 x-planes are zero [from L]
201113-10:00:17,464 nipype.interface INFO:
stderr 2020-11-13T10:00:17.464890:++ first 5 y-planes are zero [from P]
201113-10:00:17,465 nipype.interface INFO:
stderr 2020-11-13T10:00:17.465037:++ last 4 y-planes are zero [from A]
201113-10:00:17,465 nipype.interface INFO:
stderr 2020-11-13T10:00:17.465175:++ first 0 z-planes are zero [from I]
201113-10:00:17,465 nipype.interface INFO:
stderr 2020-11-13T10:00:17.465324:++ last 3 z-planes are zero [from S]
201113-10:00:17,469 nipype.interface INFO:
stderr 2020-11-13T10:00:17.469678:++ Output dataset ./uni_mask.nii.gz
201113-10:00:17,469 nipype.interface INFO:
stderr 2020-11-13T10:00:17.469897:++ applying mask to original data
201113-10:00:17,470 nipype.interface INFO:
stderr 2020-11-13T10:00:17.470764:++ Writing masked data
201113-10:00:17,484 nipype.interface INFO:
stderr 2020-11-13T10:00:17.484622:++ Output dataset ./uni_masked.nii.gz
201113-10:00:17,484 nipype.interface INFO:
stderr 2020-11-13T10:00:17.484934:++ CPU time = 0.000000 sec
201113-10:00:17,671 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-10:00:17,673 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks".
201113-10:00:17,679 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-10:00:18,124 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-10:00:18,125 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201113-10:00:18,130 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-10:00:18,363 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201113-10:00:18,364 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201113-10:00:18,372 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-10:00:18,618 nipype.interface INFO:
stderr 2020-11-13T10:00:18.618196:++ no -frac option: defaulting to -union
201113-10:00:18,618 nipype.interface INFO:
stderr 2020-11-13T10:00:18.618549:++ processing 1 input dataset(s), NN=2...
201113-10:00:18,618 nipype.interface INFO:
stderr 2020-11-13T10:00:18.618720:++ padding all datasets by 0 (for dilations)
201113-10:00:18,624 nipype.interface INFO:
stderr 2020-11-13T10:00:18.623992:++ frac 0 over 1 volumes gives min count 0
201113-10:00:18,624 nipype.interface INFO:
stderr 2020-11-13T10:00:18.624407:++ voxel limits: 0 clipped, 35982 survived, 103282 were zero
201113-10:00:18,624 nipype.interface INFO:
stderr 2020-11-13T10:00:18.624586:++ writing result sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201113-10:00:18,629 nipype.interface INFO:
stderr 2020-11-13T10:00:18.629040:++ Output dataset ./sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201113-10:00:18,822 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201113-10:00:18,823 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/sinker_0_functional_brain_mask".
201113-10:00:18,831 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-10:00:19,58 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_functional_brain_mask".
201113-10:00:19,60 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/functional_brain_mask_derivative_0".
201113-10:00:19,64 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201113-10:00:19,273 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201113-10:00:19,278 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-10:00:19,801 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201113-10:00:19,818 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.functional_brain_mask_derivative_0".
201113-10:00:19,820 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_extract_brain".
201113-10:00:19,828 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-10:00:20,80 nipype.interface INFO:
stderr 2020-11-13T10:00:20.080343:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-10:00:20,80 nipype.interface INFO:
stderr 2020-11-13T10:00:20.080730:++ Authored by: A cast of thousands
201113-10:00:23,87 nipype.interface INFO:
stderr 2020-11-13T10:00:23.087775:++ Output dataset ./sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-10:00:23,282 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-10:00:23,284 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize".
201113-10:00:23,289 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_extract_brain/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201113-10:00:25,502 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-10:00:25,503 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201113-10:00:25,509 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-10:00:26,420 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201113-10:00:26,422 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201113-10:00:26,427 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-10:00:26,678 nipype.interface INFO:
stderr 2020-11-13T10:00:26.677947:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-10:00:26,678 nipype.interface INFO:
stderr 2020-11-13T10:00:26.678307:++ Authored by: KR Hammett & RW Cox
201113-10:00:27,230 nipype.interface INFO:
stderr 2020-11-13T10:00:27.230823:++ Output dataset ./sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-10:00:27,429 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.nuisance_regressor_0_0.functional_mean".
201113-10:00:27,431 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-128_ses-2/qc_snr_0/_scan_depletion_run-2/std_dev".
201113-10:00:27,437 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/qc_snr_0/_scan_depletion_run-2/std_dev/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-10:00:27,685 nipype.interface INFO:
stderr 2020-11-13T10:00:27.684986:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-10:00:27,685 nipype.interface INFO:
stderr 2020-11-13T10:00:27.685326:++ Authored by: KR Hammett & RW Cox
201113-10:00:28,189 nipype.interface INFO:
stderr 2020-11-13T10:00:28.189267:++ Output dataset ./sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-10:00:28,390 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.qc_snr_0.std_dev".
201113-10:00:28,392 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/sinker_0_functional_preprocessed".
201113-10:00:28,399 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201113-10:00:28,627 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed".
201113-10:00:28,629 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mask_normalize".
201113-10:00:28,635 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mask_normalize/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-10:00:29,644 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-10:00:29,645 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/sinker_0_functional_preprocessed_mask".
201113-10:00:29,653 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-10:00:29,883 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_functional_preprocessed_mask".
201113-10:00:29,884 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mean".
201113-10:00:29,891 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mean/sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-10:00:30,134 nipype.interface INFO:
stderr 2020-11-13T10:00:30.134292:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-10:00:30,134 nipype.interface INFO:
stderr 2020-11-13T10:00:30.134858:++ Authored by: KR Hammett & RW Cox
201113-10:00:30,670 nipype.interface INFO:
stderr 2020-11-13T10:00:30.670021:++ Output dataset ./sub-128_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201113-10:00:30,892 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201113-10:00:30,894 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/sinker_0_mean_functional".
201113-10:00:30,901 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-10:00:31,130 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_mean_functional".
201113-10:00:31,132 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/norm_motion_params".
201113-10:00:31,138 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-10:00:31,373 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-10:00:31,374 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/sinker_0_slice_time_corrected".
201113-10:00:31,382 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201113-10:00:31,611 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_slice_time_corrected".
201113-10:00:31,613 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-2/sinker_0_raw_functional".
201113-10:00:31,619 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-10:00:31,976 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_raw_functional".
201113-10:00:31,978 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_depletion_run-2/check_func_scan".
201113-10:00:32,12 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201113-10:00:32,248 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.check_func_scan".
201113-10:00:32,260 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_depletion_run-1/select_scan_params".
201113-10:00:32,292 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-10:00:32,524 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.select_scan_params".
201113-10:00:32,535 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_depletion_run-1/s3_scan_params".
201113-10:00:32,543 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-10:00:32,770 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.s3_scan_params".
201113-10:00:32,773 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-1/scan_params_0".
201113-10:00:32,782 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-10:00:33,9 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.scan_params_0".
201113-10:00:33,12 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_depletion_run-1/selectrest".
201113-10:00:33,46 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-10:00:33,288 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.selectrest".
201113-10:00:33,301 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_gather_0/_scan_depletion_run-1/check_for_s3".
201113-10:00:33,305 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-10:00:33,590 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_gather_0.check_for_s3".
201113-10:00:33,591 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-128_ses-2/edit_func_0/_scan_depletion_run-1/func_get_idx".
201113-10:00:33,598 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-10:00:33,830 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.edit_func_0.func_get_idx".
201113-10:00:33,831 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-128_ses-2/edit_func_0/_scan_depletion_run-1/func_drop_trs".
201113-10:00:33,837 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-128/ses-2/func/sub-128_ses-2_task-depletion_run-1_bold.nii.gz[0..126] -expr "a" -prefix sub-128_ses-2_task-depletion_run-1_bold_calc.nii.gz
201113-10:00:34,91 nipype.interface INFO:
stderr 2020-11-13T10:00:34.091823:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-10:00:34,92 nipype.interface INFO:
stderr 2020-11-13T10:00:34.092239:++ Authored by: A cast of thousands
201113-10:00:39,628 nipype.interface INFO:
stderr 2020-11-13T10:00:39.628727:++ Output dataset ./sub-128_ses-2_task-depletion_run-1_bold_calc.nii.gz
201113-10:00:39,851 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.edit_func_0.func_drop_trs".
201113-10:00:39,853 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique".
201113-10:00:39,898 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-128_ses-2_task-depletion_run-1_bold_calc.nii.gz
201113-10:00:40,146 nipype.interface INFO:
stderr 2020-11-13T10:00:40.146857:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-10:00:40,147 nipype.interface INFO:
stderr 2020-11-13T10:00:40.147224:++ Authored by: RW Cox
201113-10:00:40,156 nipype.interface INFO:
stderr 2020-11-13T10:00:40.156784:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-128_ses-2_task-depletion_run-1_bold_calc.nii.gz
201113-10:00:40,157 nipype.interface INFO:
stderr 2020-11-13T10:00:40.157605: + deoblique
201113-10:00:40,158 nipype.interface INFO:
stderr 2020-11-13T10:00:40.158095: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-128_ses-2_task-depletion_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-128_ses-2_task-depletion_run-1_bold_calc.nii.gz in NIFTI storage)
201113-10:00:43,852 nipype.interface INFO:
stderr 2020-11-13T10:00:43.852008:++ 3drefit processed 1 datasets
201113-10:00:44,43 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-10:00:44,44 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_reorient".
201113-10:00:44,49 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-128_ses-2_task-depletion_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_reorient/sub-128_ses-2_task-depletion_run-1_bold_calc.nii.gz
201113-10:00:48,468 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-10:00:48,470 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_RPI".
201113-10:00:48,475 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-depletion_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_RPI/sub-128_ses-2_task-depletion_run-1_bold_calc_resample.nii.gz
201113-10:00:48,724 nipype.interface INFO:
stderr 2020-11-13T10:00:48.724010:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-10:00:48,724 nipype.interface INFO:
stderr 2020-11-13T10:00:48.724344:++ Authored by: KR Hammett & RW Cox
201113-10:00:49,175 nipype.interface INFO:
stderr 2020-11-13T10:00:49.175908:++ Output dataset ./sub-128_ses-2_task-depletion_run-1_bold_calc_resample_tstat.nii.gz
201113-10:00:49,370 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-10:00:49,372 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_generate_ref".
201113-10:00:49,382 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-128_ses-2_task-depletion_run-1_bold_calc_resample.1D -1Dmatrix_save sub-128_ses-2_task-depletion_run-1_bold_calc_resample.aff12.1D -prefix sub-128_ses-2_task-depletion_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_RPI/sub-128_ses-2_task-depletion_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-128_ses-2_task-depletion_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_generate_ref/sub-128_ses-2_task-depletion_run-1_bold_calc_resample.nii.gz
201113-10:00:49,626 nipype.interface INFO:
stderr 2020-11-13T10:00:49.626603:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-10:00:49,626 nipype.interface INFO:
stderr 2020-11-13T10:00:49.626935:++ Authored by: RW Cox
201113-10:00:49,636 nipype.interface INFO:
stderr 2020-11-13T10:00:49.636396:++ Coarse del was 10, replaced with 3
201113-10:02:34,581 nipype.interface INFO:
stderr 2020-11-13T10:02:34.581644:++ Max displacement in automask = 1.41 (mm) at sub-brick 116
201113-10:02:34,582 nipype.interface INFO:
stderr 2020-11-13T10:02:34.582193:++ Max delta displ in automask = 0.57 (mm) at sub-brick 115
201113-10:02:38,288 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-10:02:38,290 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_motion".
201113-10:02:38,296 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-depletion_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_motion/sub-128_ses-2_task-depletion_run-1_bold_calc_resample_volreg.nii.gz
201113-10:02:38,552 nipype.interface INFO:
stderr 2020-11-13T10:02:38.552265:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-10:02:38,553 nipype.interface INFO:
stderr 2020-11-13T10:02:38.553045:++ Authored by: KR Hammett & RW Cox
201113-10:02:39,13 nipype.interface INFO:
stderr 2020-11-13T10:02:39.013591:++ Output dataset ./sub-128_ses-2_task-depletion_run-1_bold_calc_resample_volreg_tstat.nii.gz
201113-10:02:39,207 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-10:02:39,209 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_motion_correct_mcflirt".
201113-10:02:39,216 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_reorient/sub-128_ses-2_task-depletion_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_motion_correct_mcflirt/sub-128_ses-2_task-depletion_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_motion/sub-128_ses-2_task-depletion_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-10:03:02,396 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-10:03:02,404 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-128_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/calculate_FDJ".
201113-10:03:02,410 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201113-10:03:02,637 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201113-10:03:02,638 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-1/sinker_0_frame_wise_displacement_jenkinson".
201113-10:03:02,645 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201113-10:03:02,876 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201113-10:03:02,877 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-1/sinker_0_max_displacement".
201113-10:03:02,886 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201113-10:03:03,116 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_max_displacement".
201113-10:03:03,118 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-128_ses-2/_scan_depletion_run-1/sinker_0_coordinate_transformation".
201113-10:03:03,136 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201113-10:03:03,409 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.sinker_0_coordinate_transformation".
201113-10:03:03,420 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_mean_skull".
201113-10:03:03,427 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-128_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_mean_skull/sub-128_ses-2_task-depletion_run-1_bold_calc_resample_mcf.nii.gz
201113-10:03:03,685 nipype.interface INFO:
stderr 2020-11-13T10:03:03.685817:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-10:03:03,686 nipype.interface INFO:
stderr 2020-11-13T10:03:03.686292:++ Authored by: KR Hammett & RW Cox
201113-10:03:04,183 nipype.interface INFO:
stderr 2020-11-13T10:03:04.183036:++ Output dataset ./sub-128_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat.nii.gz
201113-10:03:04,374 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-10:03:04,376 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass".
201113-10:03:04,381 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_mean_skull/sub-128_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-128_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-10:03:06,244 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-10:03:06,245 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_dilate".
201113-10:03:06,250 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-128_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_dilate/sub-128_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-10:03:06,957 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-10:03:06,959 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_mask".
201113-10:03:06,965 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-128_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_dilate/sub-128_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_mask/sub-128_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-10:03:07,426 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-10:03:07,427 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-128_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/unifize".
201113-10:03:07,434 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-128_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/unifize/sub-128_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-10:03:07,679 nipype.interface INFO:
stderr 2020-11-13T10:03:07.679399:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
slurmstepd: error: *** JOB 22509332 ON node179 CANCELLED AT 2020-11-13T10:03:20 DUE TO TIME LIMIT ***