mkdir: cannot create directory ‘/rigel/psych/users/av2902/sb_cpac/preproc/’: File exists
[33mWARNING:[0m skipping mount of /rigel/psych/users/av2902/sb_cpac/scratch: no such file or directory
Running BIDS validator
#### Running C-PAC for sub-071
Number of participants to run in parallel: 1
Input directory: /bids_dataset
Output directory: /outputs/output
Working directory: /outputs/tmp
Crash directory: /outputs/crash
Log directory: /outputs/log
Remove working directory: False
Available memory: 100.0 (GB)
Available threads: 1
Number of threads for ANTs: 1
Parsing /bids_dataset..
Starting participant level processing
Run called with config file /outputs/cpac_pipeline_config_2020-11-12T22-04-53Z.yml
201112-22:05:06,714 nipype.workflow INFO:
C-PAC version: 1.7.2
Setting maximum number of cores per participant to 1
Setting number of participants at once to 1
Setting OMP_NUM_THREADS to 1
Setting MKL_NUM_THREADS to 1
Setting ANTS/ITK thread usage to 1
Maximum potential number of cores that might be used during this run: 1
201112-22:05:12,339 nipype.workflow INFO:
Pipeline building completed.
201112-22:05:12,340 nipype.workflow INFO:
Strategy forks:
- cpac_fmriprep-options
201112-22:05:14,932 nipype.workflow INFO:
Workflow resting_preproc_sub-071_ses-1 settings: ['check', 'execution', 'logging', 'monitoring']
201112-22:05:15,970 nipype.workflow INFO:
Running serially.
201112-22:05:15,977 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_tgng_run-3/select_scan_params".
201112-22:05:16,11 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:05:16,251 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.select_scan_params".
201112-22:05:16,261 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_tgng_run-3/s3_scan_params".
201112-22:05:16,269 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:05:16,504 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.s3_scan_params".
201112-22:05:16,507 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.scan_params_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/scan_params_0".
201112-22:05:16,517 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:05:16,754 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.scan_params_0".
201112-22:05:16,756 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_tgng_run-3/selectrest".
201112-22:05:16,785 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:05:17,19 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.selectrest".
201112-22:05:17,28 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_tgng_run-3/check_for_s3".
201112-22:05:17,33 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:05:17,374 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.check_for_s3".
201112-22:05:17,375 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-071_ses-1/edit_func_0/_scan_tgng_run-3/func_get_idx".
201112-22:05:17,382 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:05:17,619 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.edit_func_0.func_get_idx".
201112-22:05:17,620 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-071_ses-1/edit_func_0/_scan_tgng_run-3/func_drop_trs".
201112-22:05:17,628 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-071/ses-1/func/sub-071_ses-1_task-tgng_run-3_bold.nii.gz[0..129] -expr "a" -prefix sub-071_ses-1_task-tgng_run-3_bold_calc.nii.gz
201112-22:05:17,878 nipype.interface INFO:
stderr 2020-11-12T22:05:17.878892:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:05:17,879 nipype.interface INFO:
stderr 2020-11-12T22:05:17.879680:++ Authored by: A cast of thousands
201112-22:05:23,508 nipype.interface INFO:
stderr 2020-11-12T22:05:23.508804:++ Output dataset ./sub-071_ses-1_task-tgng_run-3_bold_calc.nii.gz
201112-22:05:23,684 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.edit_func_0.func_drop_trs".
201112-22:05:23,685 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique".
201112-22:05:23,732 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-071_ses-1_task-tgng_run-3_bold_calc.nii.gz
201112-22:05:24,157 nipype.interface INFO:
stderr 2020-11-12T22:05:24.157360:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:05:24,157 nipype.interface INFO:
stderr 2020-11-12T22:05:24.157776:++ Authored by: RW Cox
201112-22:05:24,175 nipype.interface INFO:
stderr 2020-11-12T22:05:24.175804:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-071_ses-1_task-tgng_run-3_bold_calc.nii.gz
201112-22:05:24,176 nipype.interface INFO:
stderr 2020-11-12T22:05:24.176541: + deoblique
201112-22:05:24,176 nipype.interface INFO:
stderr 2020-11-12T22:05:24.176766: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-071_ses-1_task-tgng_run-3_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-071_ses-1_task-tgng_run-3_bold_calc.nii.gz in NIFTI storage)
201112-22:05:27,914 nipype.interface INFO:
stderr 2020-11-12T22:05:27.914366:++ 3drefit processed 1 datasets
201112-22:05:28,85 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:05:28,86 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient".
201112-22:05:28,93 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-1_task-tgng_run-3_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient/sub-071_ses-1_task-tgng_run-3_bold_calc.nii.gz
201112-22:05:32,530 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:05:32,532 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI".
201112-22:05:32,541 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-3_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI/sub-071_ses-1_task-tgng_run-3_bold_calc_resample.nii.gz
201112-22:05:32,924 nipype.interface INFO:
stderr 2020-11-12T22:05:32.924520:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:05:32,925 nipype.interface INFO:
stderr 2020-11-12T22:05:32.925146:++ Authored by: KR Hammett & RW Cox
201112-22:05:33,412 nipype.interface INFO:
stderr 2020-11-12T22:05:33.412082:++ Output dataset ./sub-071_ses-1_task-tgng_run-3_bold_calc_resample_tstat.nii.gz
201112-22:05:33,561 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:05:33,563 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_generate_ref".
201112-22:05:33,570 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-1_task-tgng_run-3_bold_calc_resample.1D -1Dmatrix_save sub-071_ses-1_task-tgng_run-3_bold_calc_resample.aff12.1D -prefix sub-071_ses-1_task-tgng_run-3_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI/sub-071_ses-1_task-tgng_run-3_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-1_task-tgng_run-3_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_generate_ref/sub-071_ses-1_task-tgng_run-3_bold_calc_resample.nii.gz
201112-22:05:33,832 nipype.interface INFO:
stderr 2020-11-12T22:05:33.832273:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:05:33,832 nipype.interface INFO:
stderr 2020-11-12T22:05:33.832683:++ Authored by: RW Cox
201112-22:05:33,852 nipype.interface INFO:
stderr 2020-11-12T22:05:33.852586:++ Coarse del was 10, replaced with 3
201112-22:07:22,316 nipype.interface INFO:
stderr 2020-11-12T22:07:22.316090:++ Max displacement in automask = 3.78 (mm) at sub-brick 123
201112-22:07:22,316 nipype.interface INFO:
stderr 2020-11-12T22:07:22.316624:++ Max delta displ in automask = 2.08 (mm) at sub-brick 88
201112-22:07:25,983 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:07:25,986 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion".
201112-22:07:25,994 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-3_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion/sub-071_ses-1_task-tgng_run-3_bold_calc_resample_volreg.nii.gz
201112-22:07:26,244 nipype.interface INFO:
stderr 2020-11-12T22:07:26.244257:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:07:26,244 nipype.interface INFO:
stderr 2020-11-12T22:07:26.244577:++ Authored by: KR Hammett & RW Cox
201112-22:07:26,713 nipype.interface INFO:
stderr 2020-11-12T22:07:26.713405:++ Output dataset ./sub-071_ses-1_task-tgng_run-3_bold_calc_resample_volreg_tstat.nii.gz
201112-22:07:26,857 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:07:26,858 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt".
201112-22:07:26,865 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient/sub-071_ses-1_task-tgng_run-3_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt/sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion/sub-071_ses-1_task-tgng_run-3_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:07:50,7 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:07:50,16 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/calculate_FDJ".
201112-22:07:50,22 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:07:50,251 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:07:50,253 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_frame_wise_displacement_jenkinson".
201112-22:07:50,261 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:07:50,492 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_jenkinson".
201112-22:07:50,494 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_max_displacement".
201112-22:07:50,501 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:07:50,733 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_max_displacement".
201112-22:07:50,735 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_coordinate_transformation".
201112-22:07:50,754 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:07:51,17 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_coordinate_transformation".
201112-22:07:51,28 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull".
201112-22:07:51,35 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull/sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf.nii.gz
201112-22:07:51,284 nipype.interface INFO:
stderr 2020-11-12T22:07:51.284396:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:07:51,284 nipype.interface INFO:
stderr 2020-11-12T22:07:51.284823:++ Authored by: KR Hammett & RW Cox
201112-22:07:51,786 nipype.interface INFO:
stderr 2020-11-12T22:07:51.786876:++ Output dataset ./sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat.nii.gz
201112-22:07:51,930 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:07:51,932 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass".
201112-22:07:51,938 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull/sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:07:53,953 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:07:53,955 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate".
201112-22:07:53,960 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate/sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:07:54,678 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:07:54,680 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_mask".
201112-22:07:54,686 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate/sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_mask/sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:07:55,83 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:07:55,85 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/unifize".
201112-22:07:55,91 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/unifize/sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:07:55,378 nipype.interface INFO:
stderr 2020-11-12T22:07:55.378728:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:09:13,80 nipype.interface INFO:
stderr 2020-11-12T22:09:13.080394: + Pre-processing: IAV..UW[s4458]Im
201112-22:09:13,96 nipype.interface INFO:
stderr 2020-11-12T22:09:13.096373:++ Output dataset ./uni.nii.gz
201112-22:09:13,96 nipype.interface INFO:
stderr 2020-11-12T22:09:13.096648:++ ===== Elapsed = 77.7 sec
201112-22:09:13,262 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:09:13,264 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass".
201112-22:09:13,270 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:09:13,717 nipype.interface INFO:
stderr 2020-11-12T22:09:13.717268:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:09:13,717 nipype.interface INFO:
stderr 2020-11-12T22:09:13.717752:++ Authored by: Emperor Zhark
201112-22:09:13,731 nipype.interface INFO:
stderr 2020-11-12T22:09:13.731325:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:09:13,735 nipype.interface INFO:
stderr 2020-11-12T22:09:13.735018:++ Forming automask
201112-22:09:13,738 nipype.interface INFO:
stderr 2020-11-12T22:09:13.738330: + Fixed clip level = 407.854858
201112-22:09:13,743 nipype.interface INFO:
stderr 2020-11-12T22:09:13.743833: + Used gradual clip level = 368.266083 .. 519.860718
201112-22:09:13,744 nipype.interface INFO:
stderr 2020-11-12T22:09:13.744065: + Number voxels above clip level = 32119
201112-22:09:13,744 nipype.interface INFO:
stderr 2020-11-12T22:09:13.744223: + Clustering voxels ...
201112-22:09:13,745 nipype.interface INFO:
stderr 2020-11-12T22:09:13.745361: + Largest cluster has 32117 voxels
201112-22:09:13,746 nipype.interface INFO:
stderr 2020-11-12T22:09:13.746718: + Clustering voxels ...
201112-22:09:13,747 nipype.interface INFO:
stderr 2020-11-12T22:09:13.747841: + Largest cluster has 31806 voxels
201112-22:09:13,751 nipype.interface INFO:
stderr 2020-11-12T22:09:13.751218: + Filled 632 voxels in small holes; now have 32438 voxels
201112-22:09:13,754 nipype.interface INFO:
stderr 2020-11-12T22:09:13.754454: + Filled 6 voxels in large holes; now have 32444 voxels
201112-22:09:13,755 nipype.interface INFO:
stderr 2020-11-12T22:09:13.755715: + Clustering voxels ...
201112-22:09:13,756 nipype.interface INFO:
stderr 2020-11-12T22:09:13.756843: + Largest cluster has 32443 voxels
201112-22:09:13,757 nipype.interface INFO:
stderr 2020-11-12T22:09:13.757073: + Clustering non-brain voxels ...
201112-22:09:13,757 nipype.interface INFO:
stderr 2020-11-12T22:09:13.757211: + Clustering voxels ...
201112-22:09:13,760 nipype.interface INFO:
stderr 2020-11-12T22:09:13.759989: + Largest cluster has 106739 voxels
201112-22:09:13,760 nipype.interface INFO:
stderr 2020-11-12T22:09:13.760327: + Mask now has 32525 voxels
201112-22:09:13,760 nipype.interface INFO:
stderr 2020-11-12T22:09:13.760476:++ Dilating automask
201112-22:09:13,767 nipype.interface INFO:
stderr 2020-11-12T22:09:13.767808: + Clustering voxels ...
201112-22:09:13,770 nipype.interface INFO:
stderr 2020-11-12T22:09:13.770150: + Largest cluster has 100556 voxels
201112-22:09:13,770 nipype.interface INFO:
stderr 2020-11-12T22:09:13.770504:++ 38708 voxels in the mask [out of 139264: 27.79%]
201112-22:09:13,770 nipype.interface INFO:
stderr 2020-11-12T22:09:13.770672:++ first 11 x-planes are zero [from R]
201112-22:09:13,770 nipype.interface INFO:
stderr 2020-11-12T22:09:13.770831:++ last 9 x-planes are zero [from L]
201112-22:09:13,770 nipype.interface INFO:
stderr 2020-11-12T22:09:13.770966:++ first 1 y-planes are zero [from P]
201112-22:09:13,771 nipype.interface INFO:
stderr 2020-11-12T22:09:13.771117:++ last 6 y-planes are zero [from A]
201112-22:09:13,771 nipype.interface INFO:
stderr 2020-11-12T22:09:13.771249:++ first 0 z-planes are zero [from I]
201112-22:09:13,771 nipype.interface INFO:
stderr 2020-11-12T22:09:13.771381:++ last 1 z-planes are zero [from S]
201112-22:09:13,776 nipype.interface INFO:
stderr 2020-11-12T22:09:13.776355:++ Output dataset ./uni_mask.nii.gz
201112-22:09:13,776 nipype.interface INFO:
stderr 2020-11-12T22:09:13.776525:++ applying mask to original data
201112-22:09:13,777 nipype.interface INFO:
stderr 2020-11-12T22:09:13.777206:++ Writing masked data
201112-22:09:13,791 nipype.interface INFO:
stderr 2020-11-12T22:09:13.791928:++ Output dataset ./uni_masked.nii.gz
201112-22:09:13,792 nipype.interface INFO:
stderr 2020-11-12T22:09:13.792364:++ CPU time = 0.000000 sec
201112-22:09:13,937 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:09:13,939 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks".
201112-22:09:13,945 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:09:14,336 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:09:14,337 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/cal_DVARS".
201112-22:09:14,343 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-22:09:15,115 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-22:09:15,116 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_extract_brain".
201112-22:09:15,125 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt/sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc.nii.gz
201112-22:09:15,365 nipype.interface INFO:
stderr 2020-11-12T22:09:15.365448:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:09:15,365 nipype.interface INFO:
stderr 2020-11-12T22:09:15.365747:++ Authored by: A cast of thousands
201112-22:09:18,149 nipype.interface INFO:
stderr 2020-11-12T22:09:18.149143:++ Output dataset ./sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc.nii.gz
201112-22:09:18,320 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:09:18,322 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize".
201112-22:09:18,328 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_extract_brain/sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize/sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-22:09:20,587 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:09:20,589 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mask_normalize".
201112-22:09:20,594 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize/sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mask_normalize/sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:09:21,603 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:09:21,605 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean".
201112-22:09:21,610 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean/sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc.nii.gz
201112-22:09:21,852 nipype.interface INFO:
stderr 2020-11-12T22:09:21.852697:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:09:21,853 nipype.interface INFO:
stderr 2020-11-12T22:09:21.853110:++ Authored by: KR Hammett & RW Cox
201112-22:09:22,154 nipype.interface INFO:
stderr 2020-11-12T22:09:22.154184:++ Output dataset ./sub-071_ses-1_task-tgng_run-3_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-22:09:22,322 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:09:22,324 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/norm_motion_params".
201112-22:09:22,329 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:09:22,564 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:09:22,565 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_motion_0/_scan_tgng_run-3/motion_plot".
201112-22:09:22,569 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-22:09:23,115 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_motion_0.motion_plot".
201112-22:09:23,116 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_qc___movement_trans_plot".
201112-22:09:23,123 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:09:23,339 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___movement_trans_plot/_scan_tgng_run-3/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/movement_trans_plot/_scan_tgng_run-3/motion_trans_plot.png
201112-22:09:23,352 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_trans_plot".
201112-22:09:23,354 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_qc___movement_rot_plot".
201112-22:09:23,361 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:09:23,573 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___movement_rot_plot/_scan_tgng_run-3/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/movement_rot_plot/_scan_tgng_run-3/motion_rot_plot.png
201112-22:09:23,593 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_rot_plot".
201112-22:09:23,595 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/calc_motion_parameters".
201112-22:09:23,602 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:09:23,834 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-22:09:23,835 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_motion_params".
201112-22:09:23,841 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:09:24,70 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_motion_params".
201112-22:09:24,72 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/calculate_FD".
201112-22:09:24,77 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-22:09:24,312 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-22:09:24,314 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_frame_wise_displacement_power".
201112-22:09:24,321 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:09:24,555 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_power".
201112-22:09:24,557 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/calc_power_parameters".
201112-22:09:24,563 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:09:24,796 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-22:09:24,797 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_power_params".
201112-22:09:24,804 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:09:25,38 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_power_params".
201112-22:09:25,40 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_movement_parameters".
201112-22:09:25,48 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:09:25,283 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_movement_parameters".
201112-22:09:25,285 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/func_despiked_0".
201112-22:09:25,291 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-071_ses-1_task-tgng_run-3_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/func_despiked_0/sub-071_ses-1_task-tgng_run-3_bold_calc.nii.gz
201112-22:09:25,623 nipype.interface INFO:
stderr 2020-11-12T22:09:25.623258:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:09:25,623 nipype.interface INFO:
stderr 2020-11-12T22:09:25.623618:++ Authored by: RW Cox
201112-22:09:25,634 nipype.interface INFO:
stderr 2020-11-12T22:09:25.634863:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:09:25,635 nipype.interface INFO:
stderr 2020-11-12T22:09:25.634863: such as /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/func_despiked_0/sub-071_ses-1_task-tgng_run-3_bold_calc.nii.gz,
201112-22:09:25,635 nipype.interface INFO:
stderr 2020-11-12T22:09:25.634863: or viewing/combining it with volumes of differing obliquity,
201112-22:09:25,635 nipype.interface INFO:
stderr 2020-11-12T22:09:25.634863: you should consider running:
201112-22:09:25,635 nipype.interface INFO:
stderr 2020-11-12T22:09:25.634863: 3dWarp -deoblique
201112-22:09:25,635 nipype.interface INFO:
stderr 2020-11-12T22:09:25.634863: on this and other oblique datasets in the same session.
201112-22:09:25,635 nipype.interface INFO:
stderr 2020-11-12T22:09:25.634863: See 3dWarp -help for details.
201112-22:09:25,635 nipype.interface INFO:
stderr 2020-11-12T22:09:25.635948:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/func_despiked_0/sub-071_ses-1_task-tgng_run-3_bold_calc.nii.gz is 25.736012 degrees from plumb.
201112-22:09:25,636 nipype.interface INFO:
stderr 2020-11-12T22:09:25.636147:++ Input dataset is in short format, but output will be in float format
201112-22:09:25,636 nipype.interface INFO:
stderr 2020-11-12T22:09:25.636318:++ ignoring first 0 time points, using last 130
201112-22:09:25,636 nipype.interface INFO:
stderr 2020-11-12T22:09:25.636489:++ using 130 time points => -corder 4
201112-22:09:25,636 nipype.interface INFO:
stderr 2020-11-12T22:09:25.636652:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/func_despiked_0/sub-071_ses-1_task-tgng_run-3_bold_calc.nii.gz
201112-22:09:26,103 nipype.interface INFO:
stderr 2020-11-12T22:09:26.103261:++ 35926 voxels in the automask [out of 139264 in dataset]
201112-22:09:26,108 nipype.interface INFO:
stderr 2020-11-12T22:09:26.108701:++ 60537 voxels in the dilated automask [out of 139264 in dataset]
201112-22:09:26,119 nipype.interface INFO:
stderr 2020-11-12T22:09:26.119419:++ Procesing time series with OLD model fit algorithm
201112-22:09:26,119 nipype.interface INFO:
stderr 2020-11-12T22:09:26.119600:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-22:09:26,119 nipype.interface INFO:
stderr 2020-11-12T22:09:26.119758: + [ 3.457% .. 0.072% of normal distribution]
201112-22:09:26,121 nipype.interface INFO:
stderr 2020-11-12T22:09:26.121189: + [ 8.839% .. 3.125% of Laplace distribution]
201112-22:09:26,121 nipype.interface INFO:
stderr 2020-11-12T22:09:26.121374:++ start OpenMP thread #0
201112-22:09:32,627 nipype.interface INFO:
stderr 2020-11-12T22:09:32.627567:...........................
201112-22:09:32,628 nipype.interface INFO:
stderr 2020-11-12T22:09:32.628046:++ Elapsed despike time = 6s 507ms
201112-22:09:32,628 nipype.interface INFO:
stderr 2020-11-12T22:09:32.628194:
201112-22:09:32,629 nipype.interface INFO:
stderr 2020-11-12T22:09:32.629009:++ FINAL: 7869810 data points, 825948 edits [10.495%], 298758 big edits [3.796%]
201112-22:09:36,757 nipype.interface INFO:
stderr 2020-11-12T22:09:36.757290:++ Output dataset ./sub-071_ses-1_task-tgng_run-3_bold_calc_despike.nii.gz
201112-22:09:36,939 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_despiked_0".
201112-22:09:36,941 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_tgng_run-3/slice_timing".
201112-22:09:36,949 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:09:36,950 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_tgng_run-3/slice_timing/sub-071_ses-1_task-tgng_run-3_bold_calc_despike.nii.gz
201112-22:09:37,162 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:09:37,364 nipype.interface INFO:
stderr 2020-11-12T22:09:37.364705:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:09:37,377 nipype.interface INFO:
stderr 2020-11-12T22:09:37.377539:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:09:37,377 nipype.interface INFO:
stderr 2020-11-12T22:09:37.377539: such as /outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_tgng_run-3/slice_timing/sub-071_ses-1_task-tgng_run-3_bold_calc_despike.nii.gz,
201112-22:09:37,377 nipype.interface INFO:
stderr 2020-11-12T22:09:37.377539: or viewing/combining it with volumes of differing obliquity,
201112-22:09:37,377 nipype.interface INFO:
stderr 2020-11-12T22:09:37.377539: you should consider running:
201112-22:09:37,377 nipype.interface INFO:
stderr 2020-11-12T22:09:37.377539: 3dWarp -deoblique
201112-22:09:37,378 nipype.interface INFO:
stderr 2020-11-12T22:09:37.377539: on this and other oblique datasets in the same session.
201112-22:09:37,378 nipype.interface INFO:
stderr 2020-11-12T22:09:37.377539: See 3dWarp -help for details.
201112-22:09:37,378 nipype.interface INFO:
stderr 2020-11-12T22:09:37.378244:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_tgng_run-3/slice_timing/sub-071_ses-1_task-tgng_run-3_bold_calc_despike.nii.gz is 25.736012 degrees from plumb.
201112-22:09:41,767 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_slice_timing_correction_0.slice_timing".
201112-22:09:41,768 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique".
201112-22:09:41,827 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift.nii.gz
201112-22:09:42,73 nipype.interface INFO:
stderr 2020-11-12T22:09:42.073443:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:09:42,73 nipype.interface INFO:
stderr 2020-11-12T22:09:42.073755:++ Authored by: RW Cox
201112-22:09:42,76 nipype.interface INFO:
stderr 2020-11-12T22:09:42.076092:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift.nii.gz
201112-22:09:42,76 nipype.interface INFO:
stderr 2020-11-12T22:09:42.076684: + deoblique
201112-22:09:42,76 nipype.interface INFO:
stderr 2020-11-12T22:09:42.076862: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_deoblique/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-22:09:44,283 nipype.interface INFO:
stderr 2020-11-12T22:09:44.283517:++ 3drefit processed 1 datasets
201112-22:09:44,448 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:09:44,449 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient".
201112-22:09:44,456 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift.nii.gz
201112-22:09:47,280 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:09:47,281 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI".
201112-22:09:47,288 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample.nii.gz
201112-22:09:47,532 nipype.interface INFO:
stderr 2020-11-12T22:09:47.532083:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:09:47,532 nipype.interface INFO:
stderr 2020-11-12T22:09:47.532380:++ Authored by: KR Hammett & RW Cox
201112-22:09:48,133 nipype.interface INFO:
stderr 2020-11-12T22:09:48.133882:++ Output dataset ./sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-22:09:48,279 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:09:48,281 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_generate_ref".
201112-22:09:48,287 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_RPI/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_generate_ref/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample.nii.gz
201112-22:09:48,530 nipype.interface INFO:
stderr 2020-11-12T22:09:48.530704:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:09:48,531 nipype.interface INFO:
stderr 2020-11-12T22:09:48.531007:++ Authored by: RW Cox
201112-22:09:48,538 nipype.interface INFO:
stderr 2020-11-12T22:09:48.538164:++ Coarse del was 10, replaced with 3
201112-22:11:36,472 nipype.interface INFO:
stderr 2020-11-12T22:11:36.472547:++ Max displacement in automask = 2.81 (mm) at sub-brick 104
201112-22:11:36,473 nipype.interface INFO:
stderr 2020-11-12T22:11:36.473570:++ Max delta displ in automask = 1.39 (mm) at sub-brick 88
201112-22:11:41,185 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:11:41,188 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion".
201112-22:11:41,196 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-22:11:41,445 nipype.interface INFO:
stderr 2020-11-12T22:11:41.445677:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:11:41,446 nipype.interface INFO:
stderr 2020-11-12T22:11:41.446395:++ Authored by: KR Hammett & RW Cox
201112-22:11:42,239 nipype.interface INFO:
stderr 2020-11-12T22:11:42.239688:++ Output dataset ./sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-22:11:42,388 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:11:42,389 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt".
201112-22:11:42,395 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_reorient/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_get_mean_motion/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:12:03,26 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:12:03,35 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_motion_correct".
201112-22:12:03,44 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:12:03,270 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_motion_correct".
201112-22:12:03,272 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull".
201112-22:12:03,279 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-22:12:03,531 nipype.interface INFO:
stderr 2020-11-12T22:12:03.531415:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:12:03,531 nipype.interface INFO:
stderr 2020-11-12T22:12:03.531951:++ Authored by: KR Hammett & RW Cox
201112-22:12:04,169 nipype.interface INFO:
stderr 2020-11-12T22:12:04.169060:++ Output dataset ./sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-22:12:04,323 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:12:04,324 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass".
201112-22:12:04,330 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_mean_skull/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:12:06,155 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:12:06,157 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate".
201112-22:12:06,162 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:12:06,814 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:12:06,815 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_mask".
201112-22:12:06,821 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_dilate/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_mask/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:12:07,229 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:12:07,230 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/unifize".
201112-22:12:07,237 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/unifize/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:12:07,483 nipype.interface INFO:
stderr 2020-11-12T22:12:07.483649:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:13:25,7 nipype.interface INFO:
stderr 2020-11-12T22:13:25.007541: + Pre-processing: IAV..UW[s4445]Im
201112-22:13:25,23 nipype.interface INFO:
stderr 2020-11-12T22:13:25.023496:++ Output dataset ./uni.nii.gz
201112-22:13:25,23 nipype.interface INFO:
stderr 2020-11-12T22:13:25.023711:++ ===== Elapsed = 77.5 sec
201112-22:13:25,192 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:13:25,194 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass".
201112-22:13:25,200 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:13:25,455 nipype.interface INFO:
stderr 2020-11-12T22:13:25.454886:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:13:25,455 nipype.interface INFO:
stderr 2020-11-12T22:13:25.455401:++ Authored by: Emperor Zhark
201112-22:13:25,458 nipype.interface INFO:
stderr 2020-11-12T22:13:25.458222:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:13:25,463 nipype.interface INFO:
stderr 2020-11-12T22:13:25.463648:++ Forming automask
201112-22:13:25,465 nipype.interface INFO:
stderr 2020-11-12T22:13:25.465584: + Fixed clip level = 407.836121
201112-22:13:25,470 nipype.interface INFO:
stderr 2020-11-12T22:13:25.470458: + Used gradual clip level = 367.979279 .. 519.350281
201112-22:13:25,470 nipype.interface INFO:
stderr 2020-11-12T22:13:25.470709: + Number voxels above clip level = 32140
201112-22:13:25,470 nipype.interface INFO:
stderr 2020-11-12T22:13:25.470876: + Clustering voxels ...
201112-22:13:25,472 nipype.interface INFO:
stderr 2020-11-12T22:13:25.472080: + Largest cluster has 32138 voxels
201112-22:13:25,473 nipype.interface INFO:
stderr 2020-11-12T22:13:25.473458: + Clustering voxels ...
201112-22:13:25,474 nipype.interface INFO:
stderr 2020-11-12T22:13:25.474656: + Largest cluster has 31822 voxels
201112-22:13:25,478 nipype.interface INFO:
stderr 2020-11-12T22:13:25.478133: + Filled 634 voxels in small holes; now have 32456 voxels
201112-22:13:25,481 nipype.interface INFO:
stderr 2020-11-12T22:13:25.481398: + Filled 5 voxels in large holes; now have 32461 voxels
201112-22:13:25,482 nipype.interface INFO:
stderr 2020-11-12T22:13:25.482682: + Clustering voxels ...
201112-22:13:25,483 nipype.interface INFO:
stderr 2020-11-12T22:13:25.483812: + Largest cluster has 32460 voxels
201112-22:13:25,484 nipype.interface INFO:
stderr 2020-11-12T22:13:25.484054: + Clustering non-brain voxels ...
201112-22:13:25,484 nipype.interface INFO:
stderr 2020-11-12T22:13:25.484207: + Clustering voxels ...
201112-22:13:25,487 nipype.interface INFO:
stderr 2020-11-12T22:13:25.487042: + Largest cluster has 106722 voxels
201112-22:13:25,487 nipype.interface INFO:
stderr 2020-11-12T22:13:25.487379: + Mask now has 32542 voxels
201112-22:13:25,487 nipype.interface INFO:
stderr 2020-11-12T22:13:25.487538:++ Dilating automask
201112-22:13:25,494 nipype.interface INFO:
stderr 2020-11-12T22:13:25.494560: + Clustering voxels ...
201112-22:13:25,496 nipype.interface INFO:
stderr 2020-11-12T22:13:25.496934: + Largest cluster has 100528 voxels
201112-22:13:25,497 nipype.interface INFO:
stderr 2020-11-12T22:13:25.497284:++ 38736 voxels in the mask [out of 139264: 27.81%]
201112-22:13:25,497 nipype.interface INFO:
stderr 2020-11-12T22:13:25.497464:++ first 11 x-planes are zero [from R]
201112-22:13:25,497 nipype.interface INFO:
stderr 2020-11-12T22:13:25.497631:++ last 9 x-planes are zero [from L]
201112-22:13:25,497 nipype.interface INFO:
stderr 2020-11-12T22:13:25.497775:++ first 1 y-planes are zero [from P]
201112-22:13:25,497 nipype.interface INFO:
stderr 2020-11-12T22:13:25.497926:++ last 6 y-planes are zero [from A]
201112-22:13:25,498 nipype.interface INFO:
stderr 2020-11-12T22:13:25.498071:++ first 0 z-planes are zero [from I]
201112-22:13:25,498 nipype.interface INFO:
stderr 2020-11-12T22:13:25.498214:++ last 1 z-planes are zero [from S]
201112-22:13:25,502 nipype.interface INFO:
stderr 2020-11-12T22:13:25.502847:++ Output dataset ./uni_mask.nii.gz
201112-22:13:25,503 nipype.interface INFO:
stderr 2020-11-12T22:13:25.503072:++ applying mask to original data
201112-22:13:25,503 nipype.interface INFO:
stderr 2020-11-12T22:13:25.503933:++ Writing masked data
201112-22:13:25,518 nipype.interface INFO:
stderr 2020-11-12T22:13:25.518510:++ Output dataset ./uni_masked.nii.gz
201112-22:13:25,518 nipype.interface INFO:
stderr 2020-11-12T22:13:25.518824:++ CPU time = 0.000000 sec
201112-22:13:25,664 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:13:25,666 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks".
201112-22:13:25,672 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:13:26,65 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:13:26,66 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-22:13:26,71 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-22:13:26,303 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-22:13:26,304 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-22:13:26,311 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:13:26,694 nipype.interface INFO:
stderr 2020-11-12T22:13:26.694005:++ no -frac option: defaulting to -union
201112-22:13:26,694 nipype.interface INFO:
stderr 2020-11-12T22:13:26.694360:++ processing 1 input dataset(s), NN=2...
201112-22:13:26,694 nipype.interface INFO:
stderr 2020-11-12T22:13:26.694538:++ padding all datasets by 0 (for dilations)
201112-22:13:26,706 nipype.interface INFO:
stderr 2020-11-12T22:13:26.706797:++ frac 0 over 1 volumes gives min count 0
201112-22:13:26,707 nipype.interface INFO:
stderr 2020-11-12T22:13:26.707253:++ voxel limits: 0 clipped, 38674 survived, 100590 were zero
201112-22:13:26,707 nipype.interface INFO:
stderr 2020-11-12T22:13:26.707461:++ writing result sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-22:13:26,713 nipype.interface INFO:
stderr 2020-11-12T22:13:26.713654:++ Output dataset ./sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-22:13:26,856 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-22:13:26,858 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_functional_brain_mask".
201112-22:13:26,864 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:13:27,93 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask".
201112-22:13:27,95 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/functional_brain_mask_derivative_0".
201112-22:13:27,99 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-22:13:27,312 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-22:13:27,317 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:13:27,781 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201112-22:13:27,798 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.functional_brain_mask_derivative_0".
201112-22:13:27,799 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_extract_brain".
201112-22:13:27,808 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:13:28,51 nipype.interface INFO:
stderr 2020-11-12T22:13:28.051637:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:13:28,51 nipype.interface INFO:
stderr 2020-11-12T22:13:28.051939:++ Authored by: A cast of thousands
201112-22:13:31,226 nipype.interface INFO:
stderr 2020-11-12T22:13:31.226530:++ Output dataset ./sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:13:31,399 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:13:31,401 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize".
201112-22:13:31,407 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/func_extract_brain/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-22:13:33,710 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:13:33,712 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-22:13:33,718 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:13:34,754 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_mean".
201112-22:13:34,755 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-22:13:34,760 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:13:35,5 nipype.interface INFO:
stderr 2020-11-12T22:13:35.005558:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:13:35,5 nipype.interface INFO:
stderr 2020-11-12T22:13:35.005951:++ Authored by: KR Hammett & RW Cox
201112-22:13:35,577 nipype.interface INFO:
stderr 2020-11-12T22:13:35.577513:++ Output dataset ./sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:13:35,753 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.functional_mean".
201112-22:13:35,755 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-3/std_dev".
201112-22:13:35,762 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-3/std_dev/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:13:36,3 nipype.interface INFO:
stderr 2020-11-12T22:13:36.003566:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:13:36,3 nipype.interface INFO:
stderr 2020-11-12T22:13:36.003861:++ Authored by: KR Hammett & RW Cox
201112-22:13:36,524 nipype.interface INFO:
stderr 2020-11-12T22:13:36.524887:++ Output dataset ./sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:13:36,675 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev".
201112-22:13:36,677 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_functional_preprocessed".
201112-22:13:36,684 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:13:36,913 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed".
201112-22:13:36,915 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mask_normalize".
201112-22:13:36,920 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mask_normalize/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:13:37,950 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:13:37,951 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_functional_preprocessed_mask".
201112-22:13:37,958 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:13:38,193 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed_mask".
201112-22:13:38,195 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean".
201112-22:13:38,201 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:13:38,442 nipype.interface INFO:
stderr 2020-11-12T22:13:38.442441:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:13:38,442 nipype.interface INFO:
stderr 2020-11-12T22:13:38.442762:++ Authored by: KR Hammett & RW Cox
201112-22:13:38,997 nipype.interface INFO:
stderr 2020-11-12T22:13:38.997509:++ Output dataset ./sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-22:13:39,174 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:13:39,176 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_mean_functional".
201112-22:13:39,183 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:13:39,412 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_mean_functional".
201112-22:13:39,414 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/norm_motion_params".
201112-22:13:39,419 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:13:39,655 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:13:39,656 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_slice_time_corrected".
201112-22:13:39,665 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:13:39,895 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_slice_time_corrected".
201112-22:13:39,897 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_raw_functional".
201112-22:13:39,907 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:13:40,244 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_raw_functional".
201112-22:13:40,245 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_tgng_run-3/check_func_scan".
201112-22:13:40,277 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:13:40,507 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.check_func_scan".
201112-22:13:40,517 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_tgng_run-2/select_scan_params".
201112-22:13:40,542 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:13:40,776 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.select_scan_params".
201112-22:13:40,786 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_tgng_run-2/s3_scan_params".
201112-22:13:40,794 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:13:41,25 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.s3_scan_params".
201112-22:13:41,28 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.scan_params_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/scan_params_0".
201112-22:13:41,36 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:13:41,264 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.scan_params_0".
201112-22:13:41,267 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_tgng_run-2/selectrest".
201112-22:13:41,295 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:13:41,527 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.selectrest".
201112-22:13:41,536 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_tgng_run-2/check_for_s3".
201112-22:13:41,541 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:13:41,841 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.check_for_s3".
201112-22:13:41,843 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-071_ses-1/edit_func_0/_scan_tgng_run-2/func_get_idx".
201112-22:13:41,849 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:13:42,82 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.edit_func_0.func_get_idx".
201112-22:13:42,84 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-071_ses-1/edit_func_0/_scan_tgng_run-2/func_drop_trs".
201112-22:13:42,90 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-071/ses-1/func/sub-071_ses-1_task-tgng_run-2_bold.nii.gz[0..129] -expr "a" -prefix sub-071_ses-1_task-tgng_run-2_bold_calc.nii.gz
201112-22:13:42,338 nipype.interface INFO:
stderr 2020-11-12T22:13:42.338453:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:13:42,338 nipype.interface INFO:
stderr 2020-11-12T22:13:42.338805:++ Authored by: A cast of thousands
201112-22:13:47,936 nipype.interface INFO:
stderr 2020-11-12T22:13:47.936330:++ Output dataset ./sub-071_ses-1_task-tgng_run-2_bold_calc.nii.gz
201112-22:13:48,111 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.edit_func_0.func_drop_trs".
201112-22:13:48,113 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique".
201112-22:13:48,159 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-071_ses-1_task-tgng_run-2_bold_calc.nii.gz
201112-22:13:48,405 nipype.interface INFO:
stderr 2020-11-12T22:13:48.405500:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:13:48,405 nipype.interface INFO:
stderr 2020-11-12T22:13:48.405843:++ Authored by: RW Cox
201112-22:13:48,408 nipype.interface INFO:
stderr 2020-11-12T22:13:48.408498:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-071_ses-1_task-tgng_run-2_bold_calc.nii.gz
201112-22:13:48,409 nipype.interface INFO:
stderr 2020-11-12T22:13:48.409095: + deoblique
201112-22:13:48,409 nipype.interface INFO:
stderr 2020-11-12T22:13:48.409281: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-071_ses-1_task-tgng_run-2_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-071_ses-1_task-tgng_run-2_bold_calc.nii.gz in NIFTI storage)
201112-22:13:52,163 nipype.interface INFO:
stderr 2020-11-12T22:13:52.163452:++ 3drefit processed 1 datasets
201112-22:13:52,332 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:13:52,333 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient".
201112-22:13:52,340 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-1_task-tgng_run-2_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-071_ses-1_task-tgng_run-2_bold_calc.nii.gz
201112-22:13:56,738 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:13:56,739 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI".
201112-22:13:56,746 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-2_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-071_ses-1_task-tgng_run-2_bold_calc_resample.nii.gz
201112-22:13:56,986 nipype.interface INFO:
stderr 2020-11-12T22:13:56.986147:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:13:56,986 nipype.interface INFO:
stderr 2020-11-12T22:13:56.986439:++ Authored by: KR Hammett & RW Cox
201112-22:13:57,446 nipype.interface INFO:
stderr 2020-11-12T22:13:57.445968:++ Output dataset ./sub-071_ses-1_task-tgng_run-2_bold_calc_resample_tstat.nii.gz
201112-22:13:57,593 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:13:57,595 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref".
201112-22:13:57,602 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-1_task-tgng_run-2_bold_calc_resample.1D -1Dmatrix_save sub-071_ses-1_task-tgng_run-2_bold_calc_resample.aff12.1D -prefix sub-071_ses-1_task-tgng_run-2_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-071_ses-1_task-tgng_run-2_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-1_task-tgng_run-2_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref/sub-071_ses-1_task-tgng_run-2_bold_calc_resample.nii.gz
201112-22:13:57,846 nipype.interface INFO:
stderr 2020-11-12T22:13:57.845946:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:13:57,846 nipype.interface INFO:
stderr 2020-11-12T22:13:57.846282:++ Authored by: RW Cox
201112-22:13:57,856 nipype.interface INFO:
stderr 2020-11-12T22:13:57.856410:++ Coarse del was 10, replaced with 3
201112-22:15:45,104 nipype.interface INFO:
stderr 2020-11-12T22:15:45.104579:++ Max displacement in automask = 1.63 (mm) at sub-brick 2
201112-22:15:45,105 nipype.interface INFO:
stderr 2020-11-12T22:15:45.105429:++ Max delta displ in automask = 1.93 (mm) at sub-brick 2
201112-22:15:48,769 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:15:48,771 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion".
201112-22:15:48,778 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-2_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-071_ses-1_task-tgng_run-2_bold_calc_resample_volreg.nii.gz
201112-22:15:49,32 nipype.interface INFO:
stderr 2020-11-12T22:15:49.032431:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:15:49,32 nipype.interface INFO:
stderr 2020-11-12T22:15:49.032932:++ Authored by: KR Hammett & RW Cox
201112-22:15:49,509 nipype.interface INFO:
stderr 2020-11-12T22:15:49.508930:++ Output dataset ./sub-071_ses-1_task-tgng_run-2_bold_calc_resample_volreg_tstat.nii.gz
201112-22:15:49,659 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:15:49,661 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt".
201112-22:15:49,668 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-071_ses-1_task-tgng_run-2_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-071_ses-1_task-tgng_run-2_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:16:12,989 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:16:12,999 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calculate_FDJ".
201112-22:16:13,6 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:16:13,232 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:16:13,233 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_frame_wise_displacement_jenkinson".
201112-22:16:13,240 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:16:13,473 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_jenkinson".
201112-22:16:13,475 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_max_displacement".
201112-22:16:13,483 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:16:13,712 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_max_displacement".
201112-22:16:13,714 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_coordinate_transformation".
201112-22:16:13,732 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:16:13,995 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_coordinate_transformation".
201112-22:16:14,5 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull".
201112-22:16:14,12 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf.nii.gz
201112-22:16:14,261 nipype.interface INFO:
stderr 2020-11-12T22:16:14.261276:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:16:14,261 nipype.interface INFO:
stderr 2020-11-12T22:16:14.261760:++ Authored by: KR Hammett & RW Cox
201112-22:16:14,776 nipype.interface INFO:
stderr 2020-11-12T22:16:14.776059:++ Output dataset ./sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat.nii.gz
201112-22:16:14,921 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:16:14,922 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass".
201112-22:16:14,928 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:16:16,744 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:16:16,746 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate".
201112-22:16:16,751 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:16:17,404 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:16:17,406 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask".
201112-22:16:17,412 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask/sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:16:17,820 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:16:17,822 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize".
201112-22:16:17,828 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize/sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:16:18,66 nipype.interface INFO:
stderr 2020-11-12T22:16:18.066732:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:17:35,254 nipype.interface INFO:
stderr 2020-11-12T22:17:35.254035: + Pre-processing: IAV..UW[s4120]Im
201112-22:17:35,271 nipype.interface INFO:
stderr 2020-11-12T22:17:35.271503:++ Output dataset ./uni.nii.gz
201112-22:17:35,271 nipype.interface INFO:
stderr 2020-11-12T22:17:35.271742:++ ===== Elapsed = 77.2 sec
201112-22:17:35,439 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:17:35,441 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass".
201112-22:17:35,447 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:17:35,701 nipype.interface INFO:
stderr 2020-11-12T22:17:35.701453:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:17:35,701 nipype.interface INFO:
stderr 2020-11-12T22:17:35.701768:++ Authored by: Emperor Zhark
201112-22:17:35,704 nipype.interface INFO:
stderr 2020-11-12T22:17:35.704406:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:17:35,710 nipype.interface INFO:
stderr 2020-11-12T22:17:35.710845:++ Forming automask
201112-22:17:35,712 nipype.interface INFO:
stderr 2020-11-12T22:17:35.712230: + Fixed clip level = 402.951080
201112-22:17:35,715 nipype.interface INFO:
stderr 2020-11-12T22:17:35.715549: + Used gradual clip level = 364.940552 .. 514.482178
201112-22:17:35,715 nipype.interface INFO:
stderr 2020-11-12T22:17:35.715750: + Number voxels above clip level = 32131
201112-22:17:35,715 nipype.interface INFO:
stderr 2020-11-12T22:17:35.715903: + Clustering voxels ...
201112-22:17:35,717 nipype.interface INFO:
stderr 2020-11-12T22:17:35.717079: + Largest cluster has 32130 voxels
201112-22:17:35,718 nipype.interface INFO:
stderr 2020-11-12T22:17:35.718453: + Clustering voxels ...
201112-22:17:35,719 nipype.interface INFO:
stderr 2020-11-12T22:17:35.719634: + Largest cluster has 31794 voxels
201112-22:17:35,723 nipype.interface INFO:
stderr 2020-11-12T22:17:35.723001: + Filled 760 voxels in small holes; now have 32554 voxels
201112-22:17:35,725 nipype.interface INFO:
stderr 2020-11-12T22:17:35.725324: + Filled 1 voxels in large holes; now have 32555 voxels
201112-22:17:35,726 nipype.interface INFO:
stderr 2020-11-12T22:17:35.726587: + Clustering voxels ...
201112-22:17:35,727 nipype.interface INFO:
stderr 2020-11-12T22:17:35.727703: + Largest cluster has 32554 voxels
201112-22:17:35,727 nipype.interface INFO:
stderr 2020-11-12T22:17:35.727928: + Clustering non-brain voxels ...
201112-22:17:35,728 nipype.interface INFO:
stderr 2020-11-12T22:17:35.728077: + Clustering voxels ...
201112-22:17:35,731 nipype.interface INFO:
stderr 2020-11-12T22:17:35.730983: + Largest cluster has 106648 voxels
201112-22:17:35,731 nipype.interface INFO:
stderr 2020-11-12T22:17:35.731315: + Mask now has 32616 voxels
201112-22:17:35,731 nipype.interface INFO:
stderr 2020-11-12T22:17:35.731464:++ Dilating automask
201112-22:17:35,738 nipype.interface INFO:
stderr 2020-11-12T22:17:35.738394: + Clustering voxels ...
201112-22:17:35,740 nipype.interface INFO:
stderr 2020-11-12T22:17:35.740736: + Largest cluster has 100468 voxels
201112-22:17:35,741 nipype.interface INFO:
stderr 2020-11-12T22:17:35.741072:++ 38796 voxels in the mask [out of 139264: 27.86%]
201112-22:17:35,741 nipype.interface INFO:
stderr 2020-11-12T22:17:35.741241:++ first 11 x-planes are zero [from R]
201112-22:17:35,741 nipype.interface INFO:
stderr 2020-11-12T22:17:35.741396:++ last 9 x-planes are zero [from L]
201112-22:17:35,741 nipype.interface INFO:
stderr 2020-11-12T22:17:35.741529:++ first 1 y-planes are zero [from P]
201112-22:17:35,741 nipype.interface INFO:
stderr 2020-11-12T22:17:35.741669:++ last 6 y-planes are zero [from A]
201112-22:17:35,741 nipype.interface INFO:
stderr 2020-11-12T22:17:35.741797:++ first 0 z-planes are zero [from I]
201112-22:17:35,741 nipype.interface INFO:
stderr 2020-11-12T22:17:35.741928:++ last 1 z-planes are zero [from S]
201112-22:17:35,745 nipype.interface INFO:
stderr 2020-11-12T22:17:35.745855:++ Output dataset ./uni_mask.nii.gz
201112-22:17:35,746 nipype.interface INFO:
stderr 2020-11-12T22:17:35.746023:++ applying mask to original data
201112-22:17:35,746 nipype.interface INFO:
stderr 2020-11-12T22:17:35.746693:++ Writing masked data
201112-22:17:35,760 nipype.interface INFO:
stderr 2020-11-12T22:17:35.760879:++ Output dataset ./uni_masked.nii.gz
201112-22:17:35,761 nipype.interface INFO:
stderr 2020-11-12T22:17:35.761194:++ CPU time = 0.000000 sec
201112-22:17:35,902 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:17:35,904 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks".
201112-22:17:35,911 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:17:36,303 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:17:36,305 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/cal_DVARS".
201112-22:17:36,312 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-22:17:37,3 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-22:17:37,5 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain".
201112-22:17:37,12 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz
201112-22:17:37,254 nipype.interface INFO:
stderr 2020-11-12T22:17:37.254312:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:17:37,254 nipype.interface INFO:
stderr 2020-11-12T22:17:37.254614:++ Authored by: A cast of thousands
201112-22:17:40,58 nipype.interface INFO:
stderr 2020-11-12T22:17:40.058147:++ Output dataset ./sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz
201112-22:17:40,230 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:17:40,232 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize".
201112-22:17:40,236 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain/sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-22:17:42,504 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:17:42,505 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize".
201112-22:17:42,511 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize/sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:17:43,517 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:17:43,518 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean".
201112-22:17:43,524 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz
201112-22:17:43,764 nipype.interface INFO:
stderr 2020-11-12T22:17:43.764626:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:17:43,765 nipype.interface INFO:
stderr 2020-11-12T22:17:43.765015:++ Authored by: KR Hammett & RW Cox
201112-22:17:44,67 nipype.interface INFO:
stderr 2020-11-12T22:17:44.067372:++ Output dataset ./sub-071_ses-1_task-tgng_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-22:17:44,237 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:17:44,239 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/norm_motion_params".
201112-22:17:44,245 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:17:44,475 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:17:44,476 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_motion_0/_scan_tgng_run-2/motion_plot".
201112-22:17:44,479 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-22:17:44,915 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_motion_0.motion_plot".
201112-22:17:44,916 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_qc___movement_trans_plot".
201112-22:17:44,923 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:17:45,134 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___movement_trans_plot/_scan_tgng_run-2/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/movement_trans_plot/_scan_tgng_run-2/motion_trans_plot.png
201112-22:17:45,151 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_trans_plot".
201112-22:17:45,153 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_qc___movement_rot_plot".
201112-22:17:45,160 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:17:45,372 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___movement_rot_plot/_scan_tgng_run-2/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/movement_rot_plot/_scan_tgng_run-2/motion_rot_plot.png
201112-22:17:45,392 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_rot_plot".
201112-22:17:45,394 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calc_motion_parameters".
201112-22:17:45,402 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:17:45,635 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-22:17:45,637 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_motion_params".
201112-22:17:45,643 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:17:45,875 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_motion_params".
201112-22:17:45,877 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calculate_FD".
201112-22:17:45,882 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-22:17:46,114 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-22:17:46,115 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_frame_wise_displacement_power".
201112-22:17:46,122 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:17:46,353 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_power".
201112-22:17:46,355 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calc_power_parameters".
201112-22:17:46,360 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:17:46,594 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-22:17:46,596 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_power_params".
201112-22:17:46,603 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:17:46,833 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_power_params".
201112-22:17:46,835 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_movement_parameters".
201112-22:17:46,842 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:17:47,74 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_movement_parameters".
201112-22:17:47,76 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/func_despiked_0".
201112-22:17:47,82 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-071_ses-1_task-tgng_run-2_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/func_despiked_0/sub-071_ses-1_task-tgng_run-2_bold_calc.nii.gz
201112-22:17:47,340 nipype.interface INFO:
stderr 2020-11-12T22:17:47.339987:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:17:47,341 nipype.interface INFO:
stderr 2020-11-12T22:17:47.341052:++ Authored by: RW Cox
201112-22:17:47,345 nipype.interface INFO:
stderr 2020-11-12T22:17:47.345430:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:17:47,345 nipype.interface INFO:
stderr 2020-11-12T22:17:47.345430: such as /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/func_despiked_0/sub-071_ses-1_task-tgng_run-2_bold_calc.nii.gz,
201112-22:17:47,345 nipype.interface INFO:
stderr 2020-11-12T22:17:47.345430: or viewing/combining it with volumes of differing obliquity,
201112-22:17:47,346 nipype.interface INFO:
stderr 2020-11-12T22:17:47.345430: you should consider running:
201112-22:17:47,346 nipype.interface INFO:
stderr 2020-11-12T22:17:47.345430: 3dWarp -deoblique
201112-22:17:47,346 nipype.interface INFO:
stderr 2020-11-12T22:17:47.345430: on this and other oblique datasets in the same session.
201112-22:17:47,346 nipype.interface INFO:
stderr 2020-11-12T22:17:47.345430: See 3dWarp -help for details.
201112-22:17:47,346 nipype.interface INFO:
stderr 2020-11-12T22:17:47.346865:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/func_despiked_0/sub-071_ses-1_task-tgng_run-2_bold_calc.nii.gz is 25.736012 degrees from plumb.
201112-22:17:47,347 nipype.interface INFO:
stderr 2020-11-12T22:17:47.347197:++ Input dataset is in short format, but output will be in float format
201112-22:17:47,347 nipype.interface INFO:
stderr 2020-11-12T22:17:47.347483:++ ignoring first 0 time points, using last 130
201112-22:17:47,347 nipype.interface INFO:
stderr 2020-11-12T22:17:47.347764:++ using 130 time points => -corder 4
201112-22:17:47,348 nipype.interface INFO:
stderr 2020-11-12T22:17:47.348043:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/func_despiked_0/sub-071_ses-1_task-tgng_run-2_bold_calc.nii.gz
201112-22:17:47,815 nipype.interface INFO:
stderr 2020-11-12T22:17:47.815022:++ 35884 voxels in the automask [out of 139264 in dataset]
201112-22:17:47,820 nipype.interface INFO:
stderr 2020-11-12T22:17:47.820480:++ 60513 voxels in the dilated automask [out of 139264 in dataset]
201112-22:17:47,831 nipype.interface INFO:
stderr 2020-11-12T22:17:47.831582:++ Procesing time series with OLD model fit algorithm
201112-22:17:47,831 nipype.interface INFO:
stderr 2020-11-12T22:17:47.831766:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-22:17:47,831 nipype.interface INFO:
stderr 2020-11-12T22:17:47.831922: + [ 3.457% .. 0.072% of normal distribution]
201112-22:17:47,832 nipype.interface INFO:
stderr 2020-11-12T22:17:47.832075: + [ 8.839% .. 3.125% of Laplace distribution]
201112-22:17:47,832 nipype.interface INFO:
stderr 2020-11-12T22:17:47.832231:++ start OpenMP thread #0
201112-22:17:53,974 nipype.interface INFO:
stderr 2020-11-12T22:17:53.974790:...........................
201112-22:17:53,976 nipype.interface INFO:
stderr 2020-11-12T22:17:53.976125:++ Elapsed despike time = 6s 143ms
201112-22:17:53,976 nipype.interface INFO:
stderr 2020-11-12T22:17:53.976125:
201112-22:17:53,976 nipype.interface INFO:
stderr 2020-11-12T22:17:53.976125:++ FINAL: 7866690 data points, 591332 edits [7.517%], 119911 big edits [1.524%]
201112-22:17:58,201 nipype.interface INFO:
stderr 2020-11-12T22:17:58.200971:++ Output dataset ./sub-071_ses-1_task-tgng_run-2_bold_calc_despike.nii.gz
201112-22:17:58,391 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_despiked_0".
201112-22:17:58,392 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing".
201112-22:17:58,401 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:17:58,402 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing/sub-071_ses-1_task-tgng_run-2_bold_calc_despike.nii.gz
201112-22:17:58,614 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:17:58,652 nipype.interface INFO:
stderr 2020-11-12T22:17:58.652861:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:17:58,657 nipype.interface INFO:
stderr 2020-11-12T22:17:58.657053:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:17:58,657 nipype.interface INFO:
stderr 2020-11-12T22:17:58.657053: such as /outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing/sub-071_ses-1_task-tgng_run-2_bold_calc_despike.nii.gz,
201112-22:17:58,657 nipype.interface INFO:
stderr 2020-11-12T22:17:58.657053: or viewing/combining it with volumes of differing obliquity,
201112-22:17:58,657 nipype.interface INFO:
stderr 2020-11-12T22:17:58.657053: you should consider running:
201112-22:17:58,657 nipype.interface INFO:
stderr 2020-11-12T22:17:58.657053: 3dWarp -deoblique
201112-22:17:58,657 nipype.interface INFO:
stderr 2020-11-12T22:17:58.657053: on this and other oblique datasets in the same session.
201112-22:17:58,657 nipype.interface INFO:
stderr 2020-11-12T22:17:58.657053: See 3dWarp -help for details.
201112-22:17:58,658 nipype.interface INFO:
stderr 2020-11-12T22:17:58.658102:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing/sub-071_ses-1_task-tgng_run-2_bold_calc_despike.nii.gz is 25.736012 degrees from plumb.
201112-22:18:03,122 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_slice_timing_correction_0.slice_timing".
201112-22:18:03,124 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique".
201112-22:18:03,182 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift.nii.gz
201112-22:18:03,433 nipype.interface INFO:
stderr 2020-11-12T22:18:03.433260:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:18:03,433 nipype.interface INFO:
stderr 2020-11-12T22:18:03.433621:++ Authored by: RW Cox
201112-22:18:03,436 nipype.interface INFO:
stderr 2020-11-12T22:18:03.436046:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift.nii.gz
201112-22:18:03,436 nipype.interface INFO:
stderr 2020-11-12T22:18:03.436712: + deoblique
201112-22:18:03,436 nipype.interface INFO:
stderr 2020-11-12T22:18:03.436928: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-22:18:05,656 nipype.interface INFO:
stderr 2020-11-12T22:18:05.656456:++ 3drefit processed 1 datasets
201112-22:18:05,834 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:18:05,835 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient".
201112-22:18:05,841 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift.nii.gz
201112-22:18:08,661 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:18:08,663 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI".
201112-22:18:08,669 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz
201112-22:18:08,917 nipype.interface INFO:
stderr 2020-11-12T22:18:08.916971:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:18:08,917 nipype.interface INFO:
stderr 2020-11-12T22:18:08.917303:++ Authored by: KR Hammett & RW Cox
201112-22:18:09,523 nipype.interface INFO:
stderr 2020-11-12T22:18:09.523927:++ Output dataset ./sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-22:18:09,672 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:18:09,673 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref".
201112-22:18:09,680 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz
201112-22:18:09,925 nipype.interface INFO:
stderr 2020-11-12T22:18:09.924926:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:18:09,925 nipype.interface INFO:
stderr 2020-11-12T22:18:09.925344:++ Authored by: RW Cox
201112-22:18:09,933 nipype.interface INFO:
stderr 2020-11-12T22:18:09.933295:++ Coarse del was 10, replaced with 3
201112-22:19:56,944 nipype.interface INFO:
stderr 2020-11-12T22:19:56.944529:++ Max displacement in automask = 1.25 (mm) at sub-brick 2
201112-22:19:56,945 nipype.interface INFO:
stderr 2020-11-12T22:19:56.945073:++ Max delta displ in automask = 0.88 (mm) at sub-brick 2
201112-22:20:01,684 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:20:01,686 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion".
201112-22:20:01,694 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-22:20:01,959 nipype.interface INFO:
stderr 2020-11-12T22:20:01.958892:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:20:01,959 nipype.interface INFO:
stderr 2020-11-12T22:20:01.959528:++ Authored by: KR Hammett & RW Cox
201112-22:20:02,753 nipype.interface INFO:
stderr 2020-11-12T22:20:02.753495:++ Output dataset ./sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-22:20:02,903 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:20:02,908 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt".
201112-22:20:02,917 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:20:23,513 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:20:23,522 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_motion_correct".
201112-22:20:23,531 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:20:23,760 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_motion_correct".
201112-22:20:23,762 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull".
201112-22:20:23,770 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-22:20:24,22 nipype.interface INFO:
stderr 2020-11-12T22:20:24.022834:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:20:24,23 nipype.interface INFO:
stderr 2020-11-12T22:20:24.023436:++ Authored by: KR Hammett & RW Cox
201112-22:20:24,659 nipype.interface INFO:
stderr 2020-11-12T22:20:24.659537:++ Output dataset ./sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-22:20:24,816 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:20:24,818 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass".
201112-22:20:24,825 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:20:26,634 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:20:26,635 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate".
201112-22:20:26,641 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:20:27,296 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:20:27,298 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask".
201112-22:20:27,304 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:20:27,707 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:20:27,708 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize".
201112-22:20:27,714 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:20:27,954 nipype.interface INFO:
stderr 2020-11-12T22:20:27.954808:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:21:45,34 nipype.interface INFO:
stderr 2020-11-12T22:21:45.034529: + Pre-processing: IAV..UW[s4107]Im
201112-22:21:45,51 nipype.interface INFO:
stderr 2020-11-12T22:21:45.051000:++ Output dataset ./uni.nii.gz
201112-22:21:45,51 nipype.interface INFO:
stderr 2020-11-12T22:21:45.051265:++ ===== Elapsed = 77.1 sec
201112-22:21:45,220 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:21:45,222 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass".
201112-22:21:45,228 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:21:45,481 nipype.interface INFO:
stderr 2020-11-12T22:21:45.481357:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:21:45,481 nipype.interface INFO:
stderr 2020-11-12T22:21:45.481660:++ Authored by: Emperor Zhark
201112-22:21:45,484 nipype.interface INFO:
stderr 2020-11-12T22:21:45.484895:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:21:45,491 nipype.interface INFO:
stderr 2020-11-12T22:21:45.491128:++ Forming automask
201112-22:21:45,492 nipype.interface INFO:
stderr 2020-11-12T22:21:45.492541: + Fixed clip level = 402.578796
201112-22:21:45,495 nipype.interface INFO:
stderr 2020-11-12T22:21:45.495894: + Used gradual clip level = 364.521637 .. 513.749023
201112-22:21:45,496 nipype.interface INFO:
stderr 2020-11-12T22:21:45.496104: + Number voxels above clip level = 32122
201112-22:21:45,496 nipype.interface INFO:
stderr 2020-11-12T22:21:45.496260: + Clustering voxels ...
201112-22:21:45,497 nipype.interface INFO:
stderr 2020-11-12T22:21:45.497439: + Largest cluster has 32121 voxels
201112-22:21:45,498 nipype.interface INFO:
stderr 2020-11-12T22:21:45.498827: + Clustering voxels ...
201112-22:21:45,499 nipype.interface INFO:
stderr 2020-11-12T22:21:45.499966: + Largest cluster has 31777 voxels
201112-22:21:45,503 nipype.interface INFO:
stderr 2020-11-12T22:21:45.503344: + Filled 762 voxels in small holes; now have 32539 voxels
201112-22:21:45,505 nipype.interface INFO:
stderr 2020-11-12T22:21:45.505812: + Filled 1 voxels in large holes; now have 32540 voxels
201112-22:21:45,507 nipype.interface INFO:
stderr 2020-11-12T22:21:45.507086: + Clustering voxels ...
201112-22:21:45,508 nipype.interface INFO:
stderr 2020-11-12T22:21:45.508208: + Largest cluster has 32539 voxels
201112-22:21:45,508 nipype.interface INFO:
stderr 2020-11-12T22:21:45.508435: + Clustering non-brain voxels ...
201112-22:21:45,508 nipype.interface INFO:
stderr 2020-11-12T22:21:45.508576: + Clustering voxels ...
201112-22:21:45,511 nipype.interface INFO:
stderr 2020-11-12T22:21:45.511404: + Largest cluster has 106663 voxels
201112-22:21:45,511 nipype.interface INFO:
stderr 2020-11-12T22:21:45.511732: + Mask now has 32601 voxels
201112-22:21:45,511 nipype.interface INFO:
stderr 2020-11-12T22:21:45.511883:++ Dilating automask
201112-22:21:45,518 nipype.interface INFO:
stderr 2020-11-12T22:21:45.518772: + Clustering voxels ...
201112-22:21:45,521 nipype.interface INFO:
stderr 2020-11-12T22:21:45.521633: + Largest cluster has 100480 voxels
201112-22:21:45,521 nipype.interface INFO:
stderr 2020-11-12T22:21:45.521967:++ 38784 voxels in the mask [out of 139264: 27.85%]
201112-22:21:45,522 nipype.interface INFO:
stderr 2020-11-12T22:21:45.522145:++ first 11 x-planes are zero [from R]
201112-22:21:45,522 nipype.interface INFO:
stderr 2020-11-12T22:21:45.522305:++ last 9 x-planes are zero [from L]
201112-22:21:45,522 nipype.interface INFO:
stderr 2020-11-12T22:21:45.522445:++ first 1 y-planes are zero [from P]
201112-22:21:45,522 nipype.interface INFO:
stderr 2020-11-12T22:21:45.522587:++ last 6 y-planes are zero [from A]
201112-22:21:45,522 nipype.interface INFO:
stderr 2020-11-12T22:21:45.522717:++ first 0 z-planes are zero [from I]
201112-22:21:45,522 nipype.interface INFO:
stderr 2020-11-12T22:21:45.522851:++ last 1 z-planes are zero [from S]
201112-22:21:45,527 nipype.interface INFO:
stderr 2020-11-12T22:21:45.527303:++ Output dataset ./uni_mask.nii.gz
201112-22:21:45,527 nipype.interface INFO:
stderr 2020-11-12T22:21:45.527475:++ applying mask to original data
201112-22:21:45,528 nipype.interface INFO:
stderr 2020-11-12T22:21:45.528151:++ Writing masked data
201112-22:21:45,542 nipype.interface INFO:
stderr 2020-11-12T22:21:45.542576:++ Output dataset ./uni_masked.nii.gz
201112-22:21:45,542 nipype.interface INFO:
stderr 2020-11-12T22:21:45.542864:++ CPU time = 0.000000 sec
201112-22:21:45,688 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:21:45,689 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks".
201112-22:21:45,696 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:21:46,87 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:21:46,89 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-22:21:46,94 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-22:21:46,325 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-22:21:46,326 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-22:21:46,333 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:21:46,578 nipype.interface INFO:
stderr 2020-11-12T22:21:46.578163:++ no -frac option: defaulting to -union
201112-22:21:46,578 nipype.interface INFO:
stderr 2020-11-12T22:21:46.578478:++ processing 1 input dataset(s), NN=2...
201112-22:21:46,578 nipype.interface INFO:
stderr 2020-11-12T22:21:46.578646:++ padding all datasets by 0 (for dilations)
201112-22:21:46,583 nipype.interface INFO:
stderr 2020-11-12T22:21:46.583215:++ frac 0 over 1 volumes gives min count 0
201112-22:21:46,583 nipype.interface INFO:
stderr 2020-11-12T22:21:46.583648:++ voxel limits: 0 clipped, 38724 survived, 100540 were zero
201112-22:21:46,583 nipype.interface INFO:
stderr 2020-11-12T22:21:46.583828:++ writing result sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-22:21:46,587 nipype.interface INFO:
stderr 2020-11-12T22:21:46.587946:++ Output dataset ./sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-22:21:46,735 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-22:21:46,737 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_functional_brain_mask".
201112-22:21:46,744 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:21:46,972 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask".
201112-22:21:46,974 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/functional_brain_mask_derivative_0".
201112-22:21:46,979 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-22:21:47,192 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-22:21:47,197 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:21:47,666 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201112-22:21:47,682 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.functional_brain_mask_derivative_0".
201112-22:21:47,684 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain".
201112-22:21:47,692 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:21:47,934 nipype.interface INFO:
stderr 2020-11-12T22:21:47.933968:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:21:47,934 nipype.interface INFO:
stderr 2020-11-12T22:21:47.934276:++ Authored by: A cast of thousands
201112-22:21:51,79 nipype.interface INFO:
stderr 2020-11-12T22:21:51.079278:++ Output dataset ./sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:21:51,254 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:21:51,255 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize".
201112-22:21:51,260 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-22:21:53,577 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:21:53,578 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-22:21:53,586 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:21:54,449 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_mean".
201112-22:21:54,451 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-22:21:54,457 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:21:54,708 nipype.interface INFO:
stderr 2020-11-12T22:21:54.708156:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:21:54,708 nipype.interface INFO:
stderr 2020-11-12T22:21:54.708653:++ Authored by: KR Hammett & RW Cox
201112-22:21:55,293 nipype.interface INFO:
stderr 2020-11-12T22:21:55.293859:++ Output dataset ./sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:21:55,444 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.functional_mean".
201112-22:21:55,446 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-2/std_dev".
201112-22:21:55,453 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-2/std_dev/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:21:55,696 nipype.interface INFO:
stderr 2020-11-12T22:21:55.696182:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:21:55,696 nipype.interface INFO:
stderr 2020-11-12T22:21:55.696482:++ Authored by: KR Hammett & RW Cox
201112-22:21:56,216 nipype.interface INFO:
stderr 2020-11-12T22:21:56.216457:++ Output dataset ./sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:21:56,365 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev".
201112-22:21:56,367 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_functional_preprocessed".
201112-22:21:56,374 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:21:56,605 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed".
201112-22:21:56,607 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize".
201112-22:21:56,612 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:21:57,636 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:21:57,638 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_functional_preprocessed_mask".
201112-22:21:57,645 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:21:57,876 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed_mask".
201112-22:21:57,878 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean".
201112-22:21:57,884 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:21:58,122 nipype.interface INFO:
stderr 2020-11-12T22:21:58.122702:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:21:58,123 nipype.interface INFO:
stderr 2020-11-12T22:21:58.122999:++ Authored by: KR Hammett & RW Cox
201112-22:21:58,679 nipype.interface INFO:
stderr 2020-11-12T22:21:58.679479:++ Output dataset ./sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-22:21:58,854 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:21:58,855 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_mean_functional".
201112-22:21:58,863 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:21:59,91 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_mean_functional".
201112-22:21:59,93 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/norm_motion_params".
201112-22:21:59,99 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:21:59,332 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:21:59,334 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_slice_time_corrected".
201112-22:21:59,342 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:21:59,573 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_slice_time_corrected".
201112-22:21:59,575 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_raw_functional".
201112-22:21:59,583 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:21:59,937 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_raw_functional".
201112-22:21:59,939 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_tgng_run-2/check_func_scan".
201112-22:21:59,968 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:22:00,206 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.check_func_scan".
201112-22:22:00,216 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_tgng_run-1/select_scan_params".
201112-22:22:00,244 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:22:00,480 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.select_scan_params".
201112-22:22:00,490 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_tgng_run-1/s3_scan_params".
201112-22:22:00,498 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:22:00,734 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.s3_scan_params".
201112-22:22:00,737 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.scan_params_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/scan_params_0".
201112-22:22:00,747 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:22:00,984 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.scan_params_0".
201112-22:22:00,986 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_tgng_run-1/selectrest".
201112-22:22:01,15 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:22:01,248 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.selectrest".
201112-22:22:01,258 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_tgng_run-1/check_for_s3".
201112-22:22:01,263 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:22:01,556 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.check_for_s3".
201112-22:22:01,557 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-071_ses-1/edit_func_0/_scan_tgng_run-1/func_get_idx".
201112-22:22:01,563 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:22:01,796 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.edit_func_0.func_get_idx".
201112-22:22:01,797 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-071_ses-1/edit_func_0/_scan_tgng_run-1/func_drop_trs".
201112-22:22:01,805 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-071/ses-1/func/sub-071_ses-1_task-tgng_run-1_bold.nii.gz[0..129] -expr "a" -prefix sub-071_ses-1_task-tgng_run-1_bold_calc.nii.gz
201112-22:22:02,53 nipype.interface INFO:
stderr 2020-11-12T22:22:02.053335:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:22:02,53 nipype.interface INFO:
stderr 2020-11-12T22:22:02.053692:++ Authored by: A cast of thousands
201112-22:22:07,697 nipype.interface INFO:
stderr 2020-11-12T22:22:07.697540:++ Output dataset ./sub-071_ses-1_task-tgng_run-1_bold_calc.nii.gz
201112-22:22:07,873 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.edit_func_0.func_drop_trs".
201112-22:22:07,875 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique".
201112-22:22:07,921 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-071_ses-1_task-tgng_run-1_bold_calc.nii.gz
201112-22:22:08,167 nipype.interface INFO:
stderr 2020-11-12T22:22:08.167619:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:22:08,167 nipype.interface INFO:
stderr 2020-11-12T22:22:08.167952:++ Authored by: RW Cox
201112-22:22:08,180 nipype.interface INFO:
stderr 2020-11-12T22:22:08.180504:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-071_ses-1_task-tgng_run-1_bold_calc.nii.gz
201112-22:22:08,181 nipype.interface INFO:
stderr 2020-11-12T22:22:08.181455: + deoblique
201112-22:22:08,181 nipype.interface INFO:
stderr 2020-11-12T22:22:08.181751: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-071_ses-1_task-tgng_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-071_ses-1_task-tgng_run-1_bold_calc.nii.gz in NIFTI storage)
201112-22:22:11,942 nipype.interface INFO:
stderr 2020-11-12T22:22:11.941983:++ 3drefit processed 1 datasets
201112-22:22:12,113 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:22:12,115 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient".
201112-22:22:12,122 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-1_task-tgng_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-071_ses-1_task-tgng_run-1_bold_calc.nii.gz
201112-22:22:16,525 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:22:16,526 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI".
201112-22:22:16,533 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-071_ses-1_task-tgng_run-1_bold_calc_resample.nii.gz
201112-22:22:16,775 nipype.interface INFO:
stderr 2020-11-12T22:22:16.775827:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:22:16,776 nipype.interface INFO:
stderr 2020-11-12T22:22:16.776138:++ Authored by: KR Hammett & RW Cox
201112-22:22:17,237 nipype.interface INFO:
stderr 2020-11-12T22:22:17.237491:++ Output dataset ./sub-071_ses-1_task-tgng_run-1_bold_calc_resample_tstat.nii.gz
201112-22:22:17,385 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:22:17,386 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref".
201112-22:22:17,392 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-1_task-tgng_run-1_bold_calc_resample.1D -1Dmatrix_save sub-071_ses-1_task-tgng_run-1_bold_calc_resample.aff12.1D -prefix sub-071_ses-1_task-tgng_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-071_ses-1_task-tgng_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-1_task-tgng_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref/sub-071_ses-1_task-tgng_run-1_bold_calc_resample.nii.gz
201112-22:22:17,634 nipype.interface INFO:
stderr 2020-11-12T22:22:17.634092:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:22:17,634 nipype.interface INFO:
stderr 2020-11-12T22:22:17.634390:++ Authored by: RW Cox
201112-22:22:17,644 nipype.interface INFO:
stderr 2020-11-12T22:22:17.644214:++ Coarse del was 10, replaced with 3
201112-22:24:04,217 nipype.interface INFO:
stderr 2020-11-12T22:24:04.216974:++ Max displacement in automask = 1.36 (mm) at sub-brick 121
201112-22:24:04,217 nipype.interface INFO:
stderr 2020-11-12T22:24:04.217523:++ Max delta displ in automask = 0.99 (mm) at sub-brick 121
201112-22:24:07,882 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:24:07,884 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion".
201112-22:24:07,891 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-071_ses-1_task-tgng_run-1_bold_calc_resample_volreg.nii.gz
201112-22:24:08,141 nipype.interface INFO:
stderr 2020-11-12T22:24:08.141381:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:24:08,141 nipype.interface INFO:
stderr 2020-11-12T22:24:08.141681:++ Authored by: KR Hammett & RW Cox
201112-22:24:08,610 nipype.interface INFO:
stderr 2020-11-12T22:24:08.609924:++ Output dataset ./sub-071_ses-1_task-tgng_run-1_bold_calc_resample_volreg_tstat.nii.gz
201112-22:24:08,758 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:24:08,759 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt".
201112-22:24:08,766 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-071_ses-1_task-tgng_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-071_ses-1_task-tgng_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:24:33,190 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:24:33,199 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calculate_FDJ".
201112-22:24:33,206 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:24:33,436 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:24:33,437 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_frame_wise_displacement_jenkinson".
201112-22:24:33,444 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:24:33,673 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_jenkinson".
201112-22:24:33,675 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_max_displacement".
201112-22:24:33,683 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:24:33,912 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_max_displacement".
201112-22:24:33,914 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_coordinate_transformation".
201112-22:24:33,933 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:24:34,197 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_coordinate_transformation".
201112-22:24:34,207 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull".
201112-22:24:34,215 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf.nii.gz
201112-22:24:34,480 nipype.interface INFO:
stderr 2020-11-12T22:24:34.480673:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:24:34,481 nipype.interface INFO:
stderr 2020-11-12T22:24:34.481163:++ Authored by: KR Hammett & RW Cox
201112-22:24:35,244 nipype.interface INFO:
stderr 2020-11-12T22:24:35.244693:++ Output dataset ./sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat.nii.gz
201112-22:24:35,396 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:24:35,397 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass".
201112-22:24:35,403 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:24:37,214 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:24:37,216 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate".
201112-22:24:37,222 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:24:37,874 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:24:37,876 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask".
201112-22:24:37,882 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask/sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:24:38,374 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:24:38,376 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize".
201112-22:24:38,384 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize/sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:24:38,624 nipype.interface INFO:
stderr 2020-11-12T22:24:38.624272:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:25:55,569 nipype.interface INFO:
stderr 2020-11-12T22:25:55.569241: + Pre-processing: IAV..UW[s3975]Im
201112-22:25:55,584 nipype.interface INFO:
stderr 2020-11-12T22:25:55.584069:++ Output dataset ./uni.nii.gz
201112-22:25:55,584 nipype.interface INFO:
stderr 2020-11-12T22:25:55.584346:++ ===== Elapsed = 77.0 sec
201112-22:25:55,759 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:25:55,761 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass".
201112-22:25:55,767 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:25:56,33 nipype.interface INFO:
stderr 2020-11-12T22:25:56.033270:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:25:56,33 nipype.interface INFO:
stderr 2020-11-12T22:25:56.033575:++ Authored by: Emperor Zhark
201112-22:25:56,35 nipype.interface INFO:
stderr 2020-11-12T22:25:56.035312:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:25:56,38 nipype.interface INFO:
stderr 2020-11-12T22:25:56.038631:++ Forming automask
201112-22:25:56,40 nipype.interface INFO:
stderr 2020-11-12T22:25:56.039988: + Fixed clip level = 400.783661
201112-22:25:56,43 nipype.interface INFO:
stderr 2020-11-12T22:25:56.043508: + Used gradual clip level = 363.626892 .. 502.566833
201112-22:25:56,43 nipype.interface INFO:
stderr 2020-11-12T22:25:56.043714: + Number voxels above clip level = 32019
201112-22:25:56,43 nipype.interface INFO:
stderr 2020-11-12T22:25:56.043871: + Clustering voxels ...
201112-22:25:56,45 nipype.interface INFO:
stderr 2020-11-12T22:25:56.045000: + Largest cluster has 32016 voxels
201112-22:25:56,46 nipype.interface INFO:
stderr 2020-11-12T22:25:56.046402: + Clustering voxels ...
201112-22:25:56,47 nipype.interface INFO:
stderr 2020-11-12T22:25:56.047526: + Largest cluster has 31589 voxels
201112-22:25:56,50 nipype.interface INFO:
stderr 2020-11-12T22:25:56.050891: + Filled 801 voxels in small holes; now have 32390 voxels
201112-22:25:56,53 nipype.interface INFO:
stderr 2020-11-12T22:25:56.053096: + Filled 1 voxels in large holes; now have 32391 voxels
201112-22:25:56,54 nipype.interface INFO:
stderr 2020-11-12T22:25:56.054349: + Clustering voxels ...
201112-22:25:56,55 nipype.interface INFO:
stderr 2020-11-12T22:25:56.055456: + Largest cluster has 32389 voxels
201112-22:25:56,55 nipype.interface INFO:
stderr 2020-11-12T22:25:56.055679: + Clustering non-brain voxels ...
201112-22:25:56,55 nipype.interface INFO:
stderr 2020-11-12T22:25:56.055819: + Clustering voxels ...
201112-22:25:56,58 nipype.interface INFO:
stderr 2020-11-12T22:25:56.058841: + Largest cluster has 106808 voxels
201112-22:25:56,59 nipype.interface INFO:
stderr 2020-11-12T22:25:56.059178: + Mask now has 32456 voxels
201112-22:25:56,59 nipype.interface INFO:
stderr 2020-11-12T22:25:56.059328:++ Dilating automask
201112-22:25:56,67 nipype.interface INFO:
stderr 2020-11-12T22:25:56.067257: + Clustering voxels ...
201112-22:25:56,69 nipype.interface INFO:
stderr 2020-11-12T22:25:56.069585: + Largest cluster has 100683 voxels
201112-22:25:56,69 nipype.interface INFO:
stderr 2020-11-12T22:25:56.069915:++ 38581 voxels in the mask [out of 139264: 27.70%]
201112-22:25:56,70 nipype.interface INFO:
stderr 2020-11-12T22:25:56.070100:++ first 11 x-planes are zero [from R]
201112-22:25:56,70 nipype.interface INFO:
stderr 2020-11-12T22:25:56.070262:++ last 9 x-planes are zero [from L]
201112-22:25:56,70 nipype.interface INFO:
stderr 2020-11-12T22:25:56.070396:++ first 1 y-planes are zero [from P]
201112-22:25:56,70 nipype.interface INFO:
stderr 2020-11-12T22:25:56.070540:++ last 6 y-planes are zero [from A]
201112-22:25:56,70 nipype.interface INFO:
stderr 2020-11-12T22:25:56.070672:++ first 0 z-planes are zero [from I]
201112-22:25:56,70 nipype.interface INFO:
stderr 2020-11-12T22:25:56.070805:++ last 0 z-planes are zero [from S]
201112-22:25:56,74 nipype.interface INFO:
stderr 2020-11-12T22:25:56.074730:++ Output dataset ./uni_mask.nii.gz
201112-22:25:56,74 nipype.interface INFO:
stderr 2020-11-12T22:25:56.074904:++ applying mask to original data
201112-22:25:56,75 nipype.interface INFO:
stderr 2020-11-12T22:25:56.075580:++ Writing masked data
201112-22:25:56,89 nipype.interface INFO:
stderr 2020-11-12T22:25:56.089397:++ Output dataset ./uni_masked.nii.gz
201112-22:25:56,89 nipype.interface INFO:
stderr 2020-11-12T22:25:56.089717:++ CPU time = 0.000000 sec
201112-22:25:56,237 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:25:56,238 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks".
201112-22:25:56,245 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:25:56,637 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:25:56,638 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/cal_DVARS".
201112-22:25:56,645 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-22:25:57,335 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-22:25:57,336 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain".
201112-22:25:57,344 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:25:57,584 nipype.interface INFO:
stderr 2020-11-12T22:25:57.584767:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:25:57,585 nipype.interface INFO:
stderr 2020-11-12T22:25:57.585092:++ Authored by: A cast of thousands
201112-22:26:00,384 nipype.interface INFO:
stderr 2020-11-12T22:26:00.384388:++ Output dataset ./sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:26:00,560 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:26:00,562 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize".
201112-22:26:00,567 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain/sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-22:26:02,822 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:26:02,824 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize".
201112-22:26:02,830 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize/sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:26:03,845 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:26:03,846 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean".
201112-22:26:03,851 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:26:04,93 nipype.interface INFO:
stderr 2020-11-12T22:26:04.092963:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:26:04,93 nipype.interface INFO:
stderr 2020-11-12T22:26:04.093358:++ Authored by: KR Hammett & RW Cox
201112-22:26:04,396 nipype.interface INFO:
stderr 2020-11-12T22:26:04.396644:++ Output dataset ./sub-071_ses-1_task-tgng_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-22:26:04,570 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:26:04,572 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/norm_motion_params".
201112-22:26:04,578 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:26:04,811 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:26:04,812 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_motion_0/_scan_tgng_run-1/motion_plot".
201112-22:26:04,816 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-22:26:05,257 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_motion_0.motion_plot".
201112-22:26:05,258 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_qc___movement_trans_plot".
201112-22:26:05,264 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:26:05,474 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___movement_trans_plot/_scan_tgng_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/movement_trans_plot/_scan_tgng_run-1/motion_trans_plot.png
201112-22:26:05,491 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_trans_plot".
201112-22:26:05,493 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_qc___movement_rot_plot".
201112-22:26:05,500 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:26:05,713 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___movement_rot_plot/_scan_tgng_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/movement_rot_plot/_scan_tgng_run-1/motion_rot_plot.png
201112-22:26:05,733 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_rot_plot".
201112-22:26:05,735 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calc_motion_parameters".
201112-22:26:05,742 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:26:05,976 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-22:26:05,978 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_motion_params".
201112-22:26:05,985 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:26:06,216 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_motion_params".
201112-22:26:06,217 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calculate_FD".
201112-22:26:06,222 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-22:26:06,456 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-22:26:06,457 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_frame_wise_displacement_power".
201112-22:26:06,465 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:26:06,695 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_power".
201112-22:26:06,696 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calc_power_parameters".
201112-22:26:06,702 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:26:06,935 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-22:26:06,937 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_power_params".
201112-22:26:06,945 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:26:07,183 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_power_params".
201112-22:26:07,186 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_movement_parameters".
201112-22:26:07,194 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:26:07,427 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_movement_parameters".
201112-22:26:07,428 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/func_despiked_0".
201112-22:26:07,434 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-071_ses-1_task-tgng_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/func_despiked_0/sub-071_ses-1_task-tgng_run-1_bold_calc.nii.gz
201112-22:26:07,681 nipype.interface INFO:
stderr 2020-11-12T22:26:07.681195:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:26:07,681 nipype.interface INFO:
stderr 2020-11-12T22:26:07.681538:++ Authored by: RW Cox
201112-22:26:07,683 nipype.interface INFO:
stderr 2020-11-12T22:26:07.683631:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:26:07,683 nipype.interface INFO:
stderr 2020-11-12T22:26:07.683631: such as /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/func_despiked_0/sub-071_ses-1_task-tgng_run-1_bold_calc.nii.gz,
201112-22:26:07,683 nipype.interface INFO:
stderr 2020-11-12T22:26:07.683631: or viewing/combining it with volumes of differing obliquity,
201112-22:26:07,684 nipype.interface INFO:
stderr 2020-11-12T22:26:07.683631: you should consider running:
201112-22:26:07,684 nipype.interface INFO:
stderr 2020-11-12T22:26:07.683631: 3dWarp -deoblique
201112-22:26:07,684 nipype.interface INFO:
stderr 2020-11-12T22:26:07.683631: on this and other oblique datasets in the same session.
201112-22:26:07,684 nipype.interface INFO:
stderr 2020-11-12T22:26:07.683631: See 3dWarp -help for details.
201112-22:26:07,684 nipype.interface INFO:
stderr 2020-11-12T22:26:07.684540:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/func_despiked_0/sub-071_ses-1_task-tgng_run-1_bold_calc.nii.gz is 25.736012 degrees from plumb.
201112-22:26:07,684 nipype.interface INFO:
stderr 2020-11-12T22:26:07.684727:++ Input dataset is in short format, but output will be in float format
201112-22:26:07,684 nipype.interface INFO:
stderr 2020-11-12T22:26:07.684898:++ ignoring first 0 time points, using last 130
201112-22:26:07,685 nipype.interface INFO:
stderr 2020-11-12T22:26:07.685077:++ using 130 time points => -corder 4
201112-22:26:07,685 nipype.interface INFO:
stderr 2020-11-12T22:26:07.685244:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/func_despiked_0/sub-071_ses-1_task-tgng_run-1_bold_calc.nii.gz
201112-22:26:08,147 nipype.interface INFO:
stderr 2020-11-12T22:26:08.147783:++ 35812 voxels in the automask [out of 139264 in dataset]
201112-22:26:08,153 nipype.interface INFO:
stderr 2020-11-12T22:26:08.153248:++ 60423 voxels in the dilated automask [out of 139264 in dataset]
201112-22:26:08,163 nipype.interface INFO:
stderr 2020-11-12T22:26:08.163928:++ Procesing time series with OLD model fit algorithm
201112-22:26:08,164 nipype.interface INFO:
stderr 2020-11-12T22:26:08.164120:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-22:26:08,164 nipype.interface INFO:
stderr 2020-11-12T22:26:08.164280: + [ 3.457% .. 0.072% of normal distribution]
201112-22:26:08,164 nipype.interface INFO:
stderr 2020-11-12T22:26:08.164431: + [ 8.839% .. 3.125% of Laplace distribution]
201112-22:26:08,164 nipype.interface INFO:
stderr 2020-11-12T22:26:08.164586:++ start OpenMP thread #0
201112-22:26:13,970 nipype.interface INFO:
stderr 2020-11-12T22:26:13.970268:............................
201112-22:26:13,970 nipype.interface INFO:
stderr 2020-11-12T22:26:13.970743:++ Elapsed despike time = 5s 806ms
201112-22:26:13,970 nipype.interface INFO:
stderr 2020-11-12T22:26:13.970889:
201112-22:26:13,971 nipype.interface INFO:
stderr 2020-11-12T22:26:13.971717:++ FINAL: 7854990 data points, 567367 edits [7.223%], 116081 big edits [1.478%]
201112-22:26:18,198 nipype.interface INFO:
stderr 2020-11-12T22:26:18.198418:++ Output dataset ./sub-071_ses-1_task-tgng_run-1_bold_calc_despike.nii.gz
201112-22:26:18,379 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_despiked_0".
201112-22:26:18,381 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing".
201112-22:26:18,389 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:26:18,390 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing/sub-071_ses-1_task-tgng_run-1_bold_calc_despike.nii.gz
201112-22:26:18,602 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:26:18,644 nipype.interface INFO:
stderr 2020-11-12T22:26:18.643985:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:26:18,648 nipype.interface INFO:
stderr 2020-11-12T22:26:18.648397:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:26:18,648 nipype.interface INFO:
stderr 2020-11-12T22:26:18.648397: such as /outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing/sub-071_ses-1_task-tgng_run-1_bold_calc_despike.nii.gz,
201112-22:26:18,648 nipype.interface INFO:
stderr 2020-11-12T22:26:18.648397: or viewing/combining it with volumes of differing obliquity,
201112-22:26:18,648 nipype.interface INFO:
stderr 2020-11-12T22:26:18.648397: you should consider running:
201112-22:26:18,649 nipype.interface INFO:
stderr 2020-11-12T22:26:18.648397: 3dWarp -deoblique
201112-22:26:18,649 nipype.interface INFO:
stderr 2020-11-12T22:26:18.648397: on this and other oblique datasets in the same session.
201112-22:26:18,649 nipype.interface INFO:
stderr 2020-11-12T22:26:18.648397: See 3dWarp -help for details.
201112-22:26:18,649 nipype.interface INFO:
stderr 2020-11-12T22:26:18.649575:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing/sub-071_ses-1_task-tgng_run-1_bold_calc_despike.nii.gz is 25.736012 degrees from plumb.
201112-22:26:23,28 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_slice_timing_correction_0.slice_timing".
201112-22:26:23,29 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique".
201112-22:26:23,87 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift.nii.gz
201112-22:26:23,337 nipype.interface INFO:
stderr 2020-11-12T22:26:23.336981:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:26:23,337 nipype.interface INFO:
stderr 2020-11-12T22:26:23.337339:++ Authored by: RW Cox
201112-22:26:23,339 nipype.interface INFO:
stderr 2020-11-12T22:26:23.339394:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift.nii.gz
201112-22:26:23,340 nipype.interface INFO:
stderr 2020-11-12T22:26:23.340048: + deoblique
201112-22:26:23,340 nipype.interface INFO:
stderr 2020-11-12T22:26:23.340270: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-22:26:25,547 nipype.interface INFO:
stderr 2020-11-12T22:26:25.547534:++ 3drefit processed 1 datasets
201112-22:26:25,717 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:26:25,718 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient".
201112-22:26:25,724 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift.nii.gz
201112-22:26:28,530 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:26:28,531 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI".
201112-22:26:28,538 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-22:26:28,782 nipype.interface INFO:
stderr 2020-11-12T22:26:28.782571:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:26:28,782 nipype.interface INFO:
stderr 2020-11-12T22:26:28.782871:++ Authored by: KR Hammett & RW Cox
201112-22:26:29,379 nipype.interface INFO:
stderr 2020-11-12T22:26:29.379692:++ Output dataset ./sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-22:26:29,528 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:26:29,529 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref".
201112-22:26:29,536 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-22:26:29,776 nipype.interface INFO:
stderr 2020-11-12T22:26:29.776109:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:26:29,776 nipype.interface INFO:
stderr 2020-11-12T22:26:29.776412:++ Authored by: RW Cox
201112-22:26:29,783 nipype.interface INFO:
stderr 2020-11-12T22:26:29.783796:++ Coarse del was 10, replaced with 3
201112-22:28:16,42 nipype.interface INFO:
stderr 2020-11-12T22:28:16.042565:++ Max displacement in automask = 0.99 (mm) at sub-brick 126
201112-22:28:16,43 nipype.interface INFO:
stderr 2020-11-12T22:28:16.043019:++ Max delta displ in automask = 0.57 (mm) at sub-brick 120
201112-22:28:20,736 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:28:20,738 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion".
201112-22:28:20,744 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-22:28:20,992 nipype.interface INFO:
stderr 2020-11-12T22:28:20.992910:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:28:20,993 nipype.interface INFO:
stderr 2020-11-12T22:28:20.993500:++ Authored by: KR Hammett & RW Cox
201112-22:28:21,782 nipype.interface INFO:
stderr 2020-11-12T22:28:21.782863:++ Output dataset ./sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-22:28:21,930 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:28:21,932 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt".
201112-22:28:21,938 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:28:43,369 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:28:43,378 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_motion_correct".
201112-22:28:43,385 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:28:43,610 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_motion_correct".
201112-22:28:43,612 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull".
201112-22:28:43,619 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-22:28:43,872 nipype.interface INFO:
stderr 2020-11-12T22:28:43.872376:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:28:43,872 nipype.interface INFO:
stderr 2020-11-12T22:28:43.872944:++ Authored by: KR Hammett & RW Cox
201112-22:28:44,506 nipype.interface INFO:
stderr 2020-11-12T22:28:44.506533:++ Output dataset ./sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-22:28:44,657 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:28:44,658 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass".
201112-22:28:44,664 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:28:46,482 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:28:46,483 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate".
201112-22:28:46,489 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:28:47,144 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:28:47,145 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask".
201112-22:28:47,151 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:28:47,560 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:28:47,562 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize".
201112-22:28:47,567 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:28:47,823 nipype.interface INFO:
stderr 2020-11-12T22:28:47.823277:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:30:04,904 nipype.interface INFO:
stderr 2020-11-12T22:30:04.904247: + Pre-processing: IAV..UW[s3990]Im
201112-22:30:04,924 nipype.interface INFO:
stderr 2020-11-12T22:30:04.924438:++ Output dataset ./uni.nii.gz
201112-22:30:04,924 nipype.interface INFO:
stderr 2020-11-12T22:30:04.924653:++ ===== Elapsed = 77.1 sec
201112-22:30:05,96 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:30:05,98 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass".
201112-22:30:05,103 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:30:05,365 nipype.interface INFO:
stderr 2020-11-12T22:30:05.365356:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:30:05,365 nipype.interface INFO:
stderr 2020-11-12T22:30:05.365660:++ Authored by: Emperor Zhark
201112-22:30:05,367 nipype.interface INFO:
stderr 2020-11-12T22:30:05.367540:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:30:05,371 nipype.interface INFO:
stderr 2020-11-12T22:30:05.371312:++ Forming automask
201112-22:30:05,372 nipype.interface INFO:
stderr 2020-11-12T22:30:05.372719: + Fixed clip level = 400.945801
201112-22:30:05,376 nipype.interface INFO:
stderr 2020-11-12T22:30:05.376003: + Used gradual clip level = 363.578461 .. 502.718567
201112-22:30:05,376 nipype.interface INFO:
stderr 2020-11-12T22:30:05.376211: + Number voxels above clip level = 32026
201112-22:30:05,376 nipype.interface INFO:
stderr 2020-11-12T22:30:05.376365: + Clustering voxels ...
201112-22:30:05,377 nipype.interface INFO:
stderr 2020-11-12T22:30:05.377496: + Largest cluster has 32023 voxels
201112-22:30:05,378 nipype.interface INFO:
stderr 2020-11-12T22:30:05.378893: + Clustering voxels ...
201112-22:30:05,380 nipype.interface INFO:
stderr 2020-11-12T22:30:05.380023: + Largest cluster has 31594 voxels
201112-22:30:05,383 nipype.interface INFO:
stderr 2020-11-12T22:30:05.383679: + Filled 802 voxels in small holes; now have 32396 voxels
201112-22:30:05,385 nipype.interface INFO:
stderr 2020-11-12T22:30:05.385883: + Filled 1 voxels in large holes; now have 32397 voxels
201112-22:30:05,387 nipype.interface INFO:
stderr 2020-11-12T22:30:05.387153: + Clustering voxels ...
201112-22:30:05,388 nipype.interface INFO:
stderr 2020-11-12T22:30:05.388578: + Largest cluster has 32395 voxels
201112-22:30:05,388 nipype.interface INFO:
stderr 2020-11-12T22:30:05.388808: + Clustering non-brain voxels ...
201112-22:30:05,388 nipype.interface INFO:
stderr 2020-11-12T22:30:05.388948: + Clustering voxels ...
201112-22:30:05,392 nipype.interface INFO:
stderr 2020-11-12T22:30:05.392042: + Largest cluster has 106802 voxels
201112-22:30:05,392 nipype.interface INFO:
stderr 2020-11-12T22:30:05.392372: + Mask now has 32462 voxels
201112-22:30:05,392 nipype.interface INFO:
stderr 2020-11-12T22:30:05.392523:++ Dilating automask
201112-22:30:05,400 nipype.interface INFO:
stderr 2020-11-12T22:30:05.400277: + Clustering voxels ...
201112-22:30:05,402 nipype.interface INFO:
stderr 2020-11-12T22:30:05.402693: + Largest cluster has 100661 voxels
201112-22:30:05,403 nipype.interface INFO:
stderr 2020-11-12T22:30:05.403022:++ 38603 voxels in the mask [out of 139264: 27.72%]
201112-22:30:05,403 nipype.interface INFO:
stderr 2020-11-12T22:30:05.403208:++ first 11 x-planes are zero [from R]
201112-22:30:05,403 nipype.interface INFO:
stderr 2020-11-12T22:30:05.403376:++ last 9 x-planes are zero [from L]
201112-22:30:05,403 nipype.interface INFO:
stderr 2020-11-12T22:30:05.403511:++ first 1 y-planes are zero [from P]
201112-22:30:05,403 nipype.interface INFO:
stderr 2020-11-12T22:30:05.403654:++ last 6 y-planes are zero [from A]
201112-22:30:05,403 nipype.interface INFO:
stderr 2020-11-12T22:30:05.403785:++ first 0 z-planes are zero [from I]
201112-22:30:05,403 nipype.interface INFO:
stderr 2020-11-12T22:30:05.403914:++ last 0 z-planes are zero [from S]
201112-22:30:05,408 nipype.interface INFO:
stderr 2020-11-12T22:30:05.408187:++ Output dataset ./uni_mask.nii.gz
201112-22:30:05,408 nipype.interface INFO:
stderr 2020-11-12T22:30:05.408378:++ applying mask to original data
201112-22:30:05,409 nipype.interface INFO:
stderr 2020-11-12T22:30:05.409046:++ Writing masked data
201112-22:30:05,423 nipype.interface INFO:
stderr 2020-11-12T22:30:05.423068:++ Output dataset ./uni_masked.nii.gz
201112-22:30:05,423 nipype.interface INFO:
stderr 2020-11-12T22:30:05.423317:++ CPU time = 0.000000 sec
201112-22:30:05,565 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:30:05,567 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks".
201112-22:30:05,573 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:30:05,981 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:30:05,983 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-22:30:05,988 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-22:30:06,223 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-22:30:06,225 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-22:30:06,233 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:30:06,480 nipype.interface INFO:
stderr 2020-11-12T22:30:06.480316:++ no -frac option: defaulting to -union
201112-22:30:06,480 nipype.interface INFO:
stderr 2020-11-12T22:30:06.480713:++ processing 1 input dataset(s), NN=2...
201112-22:30:06,480 nipype.interface INFO:
stderr 2020-11-12T22:30:06.480896:++ padding all datasets by 0 (for dilations)
201112-22:30:06,485 nipype.interface INFO:
stderr 2020-11-12T22:30:06.485447:++ frac 0 over 1 volumes gives min count 0
201112-22:30:06,485 nipype.interface INFO:
stderr 2020-11-12T22:30:06.485878:++ voxel limits: 0 clipped, 38535 survived, 100729 were zero
201112-22:30:06,486 nipype.interface INFO:
stderr 2020-11-12T22:30:06.486082:++ writing result sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-22:30:06,490 nipype.interface INFO:
stderr 2020-11-12T22:30:06.490851:++ Output dataset ./sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-22:30:06,644 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-22:30:06,646 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_functional_brain_mask".
201112-22:30:06,653 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:30:06,883 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask".
201112-22:30:06,884 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/functional_brain_mask_derivative_0".
201112-22:30:06,889 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-22:30:07,102 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-22:30:07,107 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:30:07,589 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201112-22:30:07,607 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.functional_brain_mask_derivative_0".
201112-22:30:07,608 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain".
201112-22:30:07,615 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:30:07,856 nipype.interface INFO:
stderr 2020-11-12T22:30:07.856814:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:30:07,857 nipype.interface INFO:
stderr 2020-11-12T22:30:07.857139:++ Authored by: A cast of thousands
201112-22:30:11,169 nipype.interface INFO:
stderr 2020-11-12T22:30:11.169101:++ Output dataset ./sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:30:11,344 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:30:11,345 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize".
201112-22:30:11,350 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-22:30:13,666 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:30:13,667 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-22:30:13,674 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:30:14,553 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_mean".
201112-22:30:14,554 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-22:30:14,559 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:30:14,802 nipype.interface INFO:
stderr 2020-11-12T22:30:14.802456:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:30:14,802 nipype.interface INFO:
stderr 2020-11-12T22:30:14.802767:++ Authored by: KR Hammett & RW Cox
201112-22:30:15,397 nipype.interface INFO:
stderr 2020-11-12T22:30:15.397887:++ Output dataset ./sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:30:15,552 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.functional_mean".
201112-22:30:15,554 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-1/std_dev".
201112-22:30:15,560 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-1/std_dev/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:30:15,802 nipype.interface INFO:
stderr 2020-11-12T22:30:15.802706:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:30:15,803 nipype.interface INFO:
stderr 2020-11-12T22:30:15.803104:++ Authored by: KR Hammett & RW Cox
201112-22:30:16,322 nipype.interface INFO:
stderr 2020-11-12T22:30:16.322910:++ Output dataset ./sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:30:16,496 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev".
201112-22:30:16,497 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_functional_preprocessed".
201112-22:30:16,504 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:30:16,733 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed".
201112-22:30:16,735 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize".
201112-22:30:16,740 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:30:17,765 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:30:17,767 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_functional_preprocessed_mask".
201112-22:30:17,774 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:30:18,8 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed_mask".
201112-22:30:18,9 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean".
201112-22:30:18,16 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:30:18,262 nipype.interface INFO:
stderr 2020-11-12T22:30:18.262572:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:30:18,263 nipype.interface INFO:
stderr 2020-11-12T22:30:18.263279:++ Authored by: KR Hammett & RW Cox
201112-22:30:18,815 nipype.interface INFO:
stderr 2020-11-12T22:30:18.815728:++ Output dataset ./sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-22:30:18,993 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:30:18,995 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_mean_functional".
201112-22:30:19,2 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:30:19,231 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_mean_functional".
201112-22:30:19,234 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/norm_motion_params".
201112-22:30:19,239 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:30:19,473 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:30:19,474 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_slice_time_corrected".
201112-22:30:19,482 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:30:19,712 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_slice_time_corrected".
201112-22:30:19,714 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_raw_functional".
201112-22:30:19,721 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:30:20,68 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_raw_functional".
201112-22:30:20,70 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_tgng_run-1/check_func_scan".
201112-22:30:20,102 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:30:20,339 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.check_func_scan".
201112-22:30:20,351 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_ms_run-1/select_scan_params".
201112-22:30:20,376 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:30:20,614 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.select_scan_params".
201112-22:30:20,624 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_ms_run-1/s3_scan_params".
201112-22:30:20,634 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:30:20,867 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.s3_scan_params".
201112-22:30:20,870 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.scan_params_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/scan_params_0".
201112-22:30:20,879 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:30:21,114 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.scan_params_0".
201112-22:30:21,116 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_ms_run-1/selectrest".
201112-22:30:21,145 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:30:21,377 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.selectrest".
201112-22:30:21,386 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_ms_run-1/check_for_s3".
201112-22:30:21,391 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:30:21,692 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.check_for_s3".
201112-22:30:21,693 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-071_ses-1/edit_func_0/_scan_ms_run-1/func_get_idx".
201112-22:30:21,699 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:30:21,934 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.edit_func_0.func_get_idx".
201112-22:30:21,936 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-071_ses-1/edit_func_0/_scan_ms_run-1/func_drop_trs".
201112-22:30:21,944 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-071/ses-1/func/sub-071_ses-1_task-ms_run-1_bold.nii.gz[0..142] -expr "a" -prefix sub-071_ses-1_task-ms_run-1_bold_calc.nii.gz
201112-22:30:22,191 nipype.interface INFO:
stderr 2020-11-12T22:30:22.191149:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:30:22,191 nipype.interface INFO:
stderr 2020-11-12T22:30:22.191500:++ Authored by: A cast of thousands
201112-22:30:28,359 nipype.interface INFO:
stderr 2020-11-12T22:30:28.359699:++ Output dataset ./sub-071_ses-1_task-ms_run-1_bold_calc.nii.gz
201112-22:30:28,535 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.edit_func_0.func_drop_trs".
201112-22:30:28,537 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique".
201112-22:30:28,583 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-071_ses-1_task-ms_run-1_bold_calc.nii.gz
201112-22:30:28,826 nipype.interface INFO:
stderr 2020-11-12T22:30:28.826872:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:30:28,827 nipype.interface INFO:
stderr 2020-11-12T22:30:28.827216:++ Authored by: RW Cox
201112-22:30:28,839 nipype.interface INFO:
stderr 2020-11-12T22:30:28.839297:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-071_ses-1_task-ms_run-1_bold_calc.nii.gz
201112-22:30:28,840 nipype.interface INFO:
stderr 2020-11-12T22:30:28.840413: + deoblique
201112-22:30:28,840 nipype.interface INFO:
stderr 2020-11-12T22:30:28.840639: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-071_ses-1_task-ms_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-071_ses-1_task-ms_run-1_bold_calc.nii.gz in NIFTI storage)
201112-22:30:32,955 nipype.interface INFO:
stderr 2020-11-12T22:30:32.955785:++ 3drefit processed 1 datasets
201112-22:30:33,131 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:30:33,133 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_reorient".
201112-22:30:33,142 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-1_task-ms_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_reorient/sub-071_ses-1_task-ms_run-1_bold_calc.nii.gz
201112-22:30:37,919 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:30:37,921 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_RPI".
201112-22:30:37,928 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-ms_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_RPI/sub-071_ses-1_task-ms_run-1_bold_calc_resample.nii.gz
201112-22:30:38,174 nipype.interface INFO:
stderr 2020-11-12T22:30:38.174064:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:30:38,174 nipype.interface INFO:
stderr 2020-11-12T22:30:38.174375:++ Authored by: KR Hammett & RW Cox
201112-22:30:38,677 nipype.interface INFO:
stderr 2020-11-12T22:30:38.677539:++ Output dataset ./sub-071_ses-1_task-ms_run-1_bold_calc_resample_tstat.nii.gz
201112-22:30:38,823 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:30:38,825 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_generate_ref".
201112-22:30:38,831 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-1_task-ms_run-1_bold_calc_resample.1D -1Dmatrix_save sub-071_ses-1_task-ms_run-1_bold_calc_resample.aff12.1D -prefix sub-071_ses-1_task-ms_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_RPI/sub-071_ses-1_task-ms_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-1_task-ms_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_generate_ref/sub-071_ses-1_task-ms_run-1_bold_calc_resample.nii.gz
201112-22:30:39,74 nipype.interface INFO:
stderr 2020-11-12T22:30:39.074890:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:30:39,75 nipype.interface INFO:
stderr 2020-11-12T22:30:39.075476:++ Authored by: RW Cox
201112-22:30:39,87 nipype.interface INFO:
stderr 2020-11-12T22:30:39.087966:++ Coarse del was 10, replaced with 3
201112-22:32:40,334 nipype.interface INFO:
stderr 2020-11-12T22:32:40.334577:++ Max displacement in automask = 3.41 (mm) at sub-brick 129
201112-22:32:40,335 nipype.interface INFO:
stderr 2020-11-12T22:32:40.335124:++ Max delta displ in automask = 1.96 (mm) at sub-brick 129
201112-22:32:44,346 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:32:44,348 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_motion".
201112-22:32:44,356 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-ms_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_motion/sub-071_ses-1_task-ms_run-1_bold_calc_resample_volreg.nii.gz
201112-22:32:44,613 nipype.interface INFO:
stderr 2020-11-12T22:32:44.613138:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:32:44,613 nipype.interface INFO:
stderr 2020-11-12T22:32:44.613590:++ Authored by: KR Hammett & RW Cox
201112-22:32:45,122 nipype.interface INFO:
stderr 2020-11-12T22:32:45.122552:++ Output dataset ./sub-071_ses-1_task-ms_run-1_bold_calc_resample_volreg_tstat.nii.gz
201112-22:32:45,269 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:32:45,270 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_motion_correct_mcflirt".
201112-22:32:45,277 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_reorient/sub-071_ses-1_task-ms_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_motion_correct_mcflirt/sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_motion/sub-071_ses-1_task-ms_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:33:10,715 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:33:10,724 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/calculate_FDJ".
201112-22:33:10,730 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:33:10,959 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:33:10,961 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_frame_wise_displacement_jenkinson".
201112-22:33:10,967 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:33:11,196 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_jenkinson".
201112-22:33:11,198 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_max_displacement".
201112-22:33:11,206 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:33:11,433 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_max_displacement".
201112-22:33:11,435 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_coordinate_transformation".
201112-22:33:11,455 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:33:11,721 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_coordinate_transformation".
201112-22:33:11,733 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_mean_skull".
201112-22:33:11,741 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_mean_skull/sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf.nii.gz
201112-22:33:11,991 nipype.interface INFO:
stderr 2020-11-12T22:33:11.991425:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:33:11,991 nipype.interface INFO:
stderr 2020-11-12T22:33:11.991887:++ Authored by: KR Hammett & RW Cox
201112-22:33:12,538 nipype.interface INFO:
stderr 2020-11-12T22:33:12.538083:++ Output dataset ./sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat.nii.gz
201112-22:33:12,688 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:33:12,689 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass".
201112-22:33:12,695 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_mean_skull/sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:33:14,506 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:33:14,508 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_dilate".
201112-22:33:14,514 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_dilate/sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:33:15,181 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:33:15,183 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_mask".
201112-22:33:15,189 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_dilate/sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_mask/sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:33:15,597 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:33:15,598 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/unifize".
201112-22:33:15,604 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/unifize/sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:33:15,851 nipype.interface INFO:
stderr 2020-11-12T22:33:15.851745:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:34:33,283 nipype.interface INFO:
stderr 2020-11-12T22:34:33.283820: + Pre-processing: IAV..UW[s4568]Im
201112-22:34:33,299 nipype.interface INFO:
stderr 2020-11-12T22:34:33.299519:++ Output dataset ./uni.nii.gz
201112-22:34:33,299 nipype.interface INFO:
stderr 2020-11-12T22:34:33.299794:++ ===== Elapsed = 77.4 sec
201112-22:34:33,469 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:34:33,470 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass".
201112-22:34:33,476 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:34:33,722 nipype.interface INFO:
stderr 2020-11-12T22:34:33.722230:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:34:33,722 nipype.interface INFO:
stderr 2020-11-12T22:34:33.722634:++ Authored by: Emperor Zhark
201112-22:34:33,725 nipype.interface INFO:
stderr 2020-11-12T22:34:33.725177:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:34:33,730 nipype.interface INFO:
stderr 2020-11-12T22:34:33.730803:++ Forming automask
201112-22:34:33,732 nipype.interface INFO:
stderr 2020-11-12T22:34:33.732183: + Fixed clip level = 411.256409
201112-22:34:33,735 nipype.interface INFO:
stderr 2020-11-12T22:34:33.735471: + Used gradual clip level = 366.436676 .. 517.028992
201112-22:34:33,735 nipype.interface INFO:
stderr 2020-11-12T22:34:33.735668: + Number voxels above clip level = 31748
201112-22:34:33,735 nipype.interface INFO:
stderr 2020-11-12T22:34:33.735818: + Clustering voxels ...
201112-22:34:33,736 nipype.interface INFO:
stderr 2020-11-12T22:34:33.736931: + Largest cluster has 31748 voxels
201112-22:34:33,738 nipype.interface INFO:
stderr 2020-11-12T22:34:33.738296: + Clustering voxels ...
201112-22:34:33,739 nipype.interface INFO:
stderr 2020-11-12T22:34:33.739423: + Largest cluster has 31454 voxels
201112-22:34:33,742 nipype.interface INFO:
stderr 2020-11-12T22:34:33.742775: + Filled 668 voxels in small holes; now have 32122 voxels
201112-22:34:33,747 nipype.interface INFO:
stderr 2020-11-12T22:34:33.747009: + Filled 3 voxels in large holes; now have 32125 voxels
201112-22:34:33,748 nipype.interface INFO:
stderr 2020-11-12T22:34:33.748274: + Clustering voxels ...
201112-22:34:33,749 nipype.interface INFO:
stderr 2020-11-12T22:34:33.749384: + Largest cluster has 32124 voxels
201112-22:34:33,749 nipype.interface INFO:
stderr 2020-11-12T22:34:33.749608: + Clustering non-brain voxels ...
201112-22:34:33,749 nipype.interface INFO:
stderr 2020-11-12T22:34:33.749747: + Clustering voxels ...
201112-22:34:33,752 nipype.interface INFO:
stderr 2020-11-12T22:34:33.752854: + Largest cluster has 107055 voxels
201112-22:34:33,753 nipype.interface INFO:
stderr 2020-11-12T22:34:33.753189: + Mask now has 32209 voxels
201112-22:34:33,753 nipype.interface INFO:
stderr 2020-11-12T22:34:33.753340:++ Dilating automask
201112-22:34:33,761 nipype.interface INFO:
stderr 2020-11-12T22:34:33.761744: + Clustering voxels ...
201112-22:34:33,764 nipype.interface INFO:
stderr 2020-11-12T22:34:33.764120: + Largest cluster has 100848 voxels
201112-22:34:33,764 nipype.interface INFO:
stderr 2020-11-12T22:34:33.764448:++ 38416 voxels in the mask [out of 139264: 27.59%]
201112-22:34:33,764 nipype.interface INFO:
stderr 2020-11-12T22:34:33.764618:++ first 10 x-planes are zero [from R]
201112-22:34:33,764 nipype.interface INFO:
stderr 2020-11-12T22:34:33.764780:++ last 9 x-planes are zero [from L]
201112-22:34:33,764 nipype.interface INFO:
stderr 2020-11-12T22:34:33.764914:++ first 2 y-planes are zero [from P]
201112-22:34:33,765 nipype.interface INFO:
stderr 2020-11-12T22:34:33.765058:++ last 5 y-planes are zero [from A]
201112-22:34:33,765 nipype.interface INFO:
stderr 2020-11-12T22:34:33.765188:++ first 0 z-planes are zero [from I]
201112-22:34:33,765 nipype.interface INFO:
stderr 2020-11-12T22:34:33.765318:++ last 0 z-planes are zero [from S]
201112-22:34:33,769 nipype.interface INFO:
stderr 2020-11-12T22:34:33.769066:++ Output dataset ./uni_mask.nii.gz
201112-22:34:33,769 nipype.interface INFO:
stderr 2020-11-12T22:34:33.769237:++ applying mask to original data
201112-22:34:33,769 nipype.interface INFO:
stderr 2020-11-12T22:34:33.769900:++ Writing masked data
201112-22:34:33,784 nipype.interface INFO:
stderr 2020-11-12T22:34:33.784487:++ Output dataset ./uni_masked.nii.gz
201112-22:34:33,784 nipype.interface INFO:
stderr 2020-11-12T22:34:33.784796:++ CPU time = 0.000000 sec
201112-22:34:33,932 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:34:33,933 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks".
201112-22:34:33,940 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:34:34,337 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:34:34,339 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/cal_DVARS".
201112-22:34:34,347 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-22:34:35,83 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-22:34:35,85 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_extract_brain".
201112-22:34:35,93 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_motion_correct_mcflirt/sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:34:35,336 nipype.interface INFO:
stderr 2020-11-12T22:34:35.336073:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:34:35,336 nipype.interface INFO:
stderr 2020-11-12T22:34:35.336391:++ Authored by: A cast of thousands
201112-22:34:38,400 nipype.interface INFO:
stderr 2020-11-12T22:34:38.400853:++ Output dataset ./sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:34:38,575 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:34:38,577 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize".
201112-22:34:38,583 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_extract_brain/sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize/sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-22:34:41,123 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:34:41,124 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mask_normalize".
201112-22:34:41,129 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize/sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mask_normalize/sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:34:42,195 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:34:42,197 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean".
201112-22:34:42,202 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean/sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:34:42,446 nipype.interface INFO:
stderr 2020-11-12T22:34:42.446913:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:34:42,447 nipype.interface INFO:
stderr 2020-11-12T22:34:42.447337:++ Authored by: KR Hammett & RW Cox
201112-22:34:42,773 nipype.interface INFO:
stderr 2020-11-12T22:34:42.773379:++ Output dataset ./sub-071_ses-1_task-ms_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-22:34:42,947 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:34:42,948 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/norm_motion_params".
201112-22:34:42,954 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:34:43,188 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:34:43,189 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_motion_0/_scan_ms_run-1/motion_plot".
201112-22:34:43,193 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-22:34:43,636 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_motion_0.motion_plot".
201112-22:34:43,637 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_qc___movement_trans_plot".
201112-22:34:43,645 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:34:43,855 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___movement_trans_plot/_scan_ms_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/movement_trans_plot/_scan_ms_run-1/motion_trans_plot.png
201112-22:34:43,871 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_trans_plot".
201112-22:34:43,872 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_qc___movement_rot_plot".
201112-22:34:43,879 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:34:44,92 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___movement_rot_plot/_scan_ms_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/movement_rot_plot/_scan_ms_run-1/motion_rot_plot.png
201112-22:34:44,110 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_rot_plot".
201112-22:34:44,112 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/calc_motion_parameters".
201112-22:34:44,119 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:34:44,354 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-22:34:44,356 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_motion_params".
201112-22:34:44,363 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:34:44,594 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_motion_params".
201112-22:34:44,596 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/calculate_FD".
201112-22:34:44,599 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-22:34:44,832 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-22:34:44,834 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_frame_wise_displacement_power".
201112-22:34:44,841 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:34:45,73 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_power".
201112-22:34:45,75 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/calc_power_parameters".
201112-22:34:45,80 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:34:45,315 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-22:34:45,316 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_power_params".
201112-22:34:45,323 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:34:45,555 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_power_params".
201112-22:34:45,556 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_movement_parameters".
201112-22:34:45,564 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:34:45,794 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_movement_parameters".
201112-22:34:45,795 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/func_despiked_0".
201112-22:34:45,802 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-071_ses-1_task-ms_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/func_despiked_0/sub-071_ses-1_task-ms_run-1_bold_calc.nii.gz
201112-22:34:46,67 nipype.interface INFO:
stderr 2020-11-12T22:34:46.067313:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:34:46,67 nipype.interface INFO:
stderr 2020-11-12T22:34:46.067653:++ Authored by: RW Cox
201112-22:34:46,69 nipype.interface INFO:
stderr 2020-11-12T22:34:46.069780:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:34:46,69 nipype.interface INFO:
stderr 2020-11-12T22:34:46.069780: such as /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/func_despiked_0/sub-071_ses-1_task-ms_run-1_bold_calc.nii.gz,
201112-22:34:46,70 nipype.interface INFO:
stderr 2020-11-12T22:34:46.069780: or viewing/combining it with volumes of differing obliquity,
201112-22:34:46,70 nipype.interface INFO:
stderr 2020-11-12T22:34:46.069780: you should consider running:
201112-22:34:46,70 nipype.interface INFO:
stderr 2020-11-12T22:34:46.069780: 3dWarp -deoblique
201112-22:34:46,70 nipype.interface INFO:
stderr 2020-11-12T22:34:46.069780: on this and other oblique datasets in the same session.
201112-22:34:46,70 nipype.interface INFO:
stderr 2020-11-12T22:34:46.069780: See 3dWarp -help for details.
201112-22:34:46,70 nipype.interface INFO:
stderr 2020-11-12T22:34:46.070632:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/func_despiked_0/sub-071_ses-1_task-ms_run-1_bold_calc.nii.gz is 25.736012 degrees from plumb.
201112-22:34:46,70 nipype.interface INFO:
stderr 2020-11-12T22:34:46.070819:++ Input dataset is in short format, but output will be in float format
201112-22:34:46,71 nipype.interface INFO:
stderr 2020-11-12T22:34:46.070988:++ ignoring first 0 time points, using last 143
201112-22:34:46,71 nipype.interface INFO:
stderr 2020-11-12T22:34:46.071166:++ using 143 time points => -corder 5
201112-22:34:46,71 nipype.interface INFO:
stderr 2020-11-12T22:34:46.071331:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/func_despiked_0/sub-071_ses-1_task-ms_run-1_bold_calc.nii.gz
201112-22:34:46,588 nipype.interface INFO:
stderr 2020-11-12T22:34:46.588059:++ 35615 voxels in the automask [out of 139264 in dataset]
201112-22:34:46,593 nipype.interface INFO:
stderr 2020-11-12T22:34:46.593532:++ 60031 voxels in the dilated automask [out of 139264 in dataset]
201112-22:34:46,605 nipype.interface INFO:
stderr 2020-11-12T22:34:46.605428:++ Procesing time series with OLD model fit algorithm
201112-22:34:46,605 nipype.interface INFO:
stderr 2020-11-12T22:34:46.605617:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-22:34:46,605 nipype.interface INFO:
stderr 2020-11-12T22:34:46.605777: + [ 3.457% .. 0.072% of normal distribution]
201112-22:34:46,605 nipype.interface INFO:
stderr 2020-11-12T22:34:46.605924: + [ 8.839% .. 3.125% of Laplace distribution]
201112-22:34:46,606 nipype.interface INFO:
stderr 2020-11-12T22:34:46.606086:++ start OpenMP thread #0
201112-22:34:55,818 nipype.interface INFO:
stderr 2020-11-12T22:34:55.817916:...........................
201112-22:34:55,818 nipype.interface INFO:
stderr 2020-11-12T22:34:55.818626:++ Elapsed despike time = 9s 213ms
201112-22:34:55,818 nipype.interface INFO:
stderr 2020-11-12T22:34:55.818773:
201112-22:34:55,819 nipype.interface INFO:
stderr 2020-11-12T22:34:55.819655:++ FINAL: 8584433 data points, 789792 edits [9.200%], 219333 big edits [2.555%]
201112-22:35:00,387 nipype.interface INFO:
stderr 2020-11-12T22:35:00.387529:++ Output dataset ./sub-071_ses-1_task-ms_run-1_bold_calc_despike.nii.gz
201112-22:35:00,576 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_despiked_0".
201112-22:35:00,577 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_ms_run-1/slice_timing".
201112-22:35:00,585 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:35:00,586 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_ms_run-1/slice_timing/sub-071_ses-1_task-ms_run-1_bold_calc_despike.nii.gz
201112-22:35:00,795 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:35:00,826 nipype.interface INFO:
stderr 2020-11-12T22:35:00.825989:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:35:00,828 nipype.interface INFO:
stderr 2020-11-12T22:35:00.828466:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:35:00,828 nipype.interface INFO:
stderr 2020-11-12T22:35:00.828466: such as /outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_ms_run-1/slice_timing/sub-071_ses-1_task-ms_run-1_bold_calc_despike.nii.gz,
201112-22:35:00,828 nipype.interface INFO:
stderr 2020-11-12T22:35:00.828466: or viewing/combining it with volumes of differing obliquity,
201112-22:35:00,828 nipype.interface INFO:
stderr 2020-11-12T22:35:00.828466: you should consider running:
201112-22:35:00,828 nipype.interface INFO:
stderr 2020-11-12T22:35:00.828466: 3dWarp -deoblique
201112-22:35:00,828 nipype.interface INFO:
stderr 2020-11-12T22:35:00.828466: on this and other oblique datasets in the same session.
201112-22:35:00,829 nipype.interface INFO:
stderr 2020-11-12T22:35:00.828466: See 3dWarp -help for details.
201112-22:35:00,829 nipype.interface INFO:
stderr 2020-11-12T22:35:00.829162:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_ms_run-1/slice_timing/sub-071_ses-1_task-ms_run-1_bold_calc_despike.nii.gz is 25.736012 degrees from plumb.
201112-22:35:05,483 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_slice_timing_correction_0.slice_timing".
201112-22:35:05,485 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique".
201112-22:35:05,550 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift.nii.gz
201112-22:35:05,798 nipype.interface INFO:
stderr 2020-11-12T22:35:05.798327:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:35:05,798 nipype.interface INFO:
stderr 2020-11-12T22:35:05.798664:++ Authored by: RW Cox
201112-22:35:05,800 nipype.interface INFO:
stderr 2020-11-12T22:35:05.800747:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift.nii.gz
201112-22:35:05,801 nipype.interface INFO:
stderr 2020-11-12T22:35:05.801616: + deoblique
201112-22:35:05,801 nipype.interface INFO:
stderr 2020-11-12T22:35:05.801813: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_deoblique/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-22:35:08,224 nipype.interface INFO:
stderr 2020-11-12T22:35:08.224391:++ 3drefit processed 1 datasets
201112-22:35:08,394 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:35:08,396 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_reorient".
201112-22:35:08,403 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_reorient/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift.nii.gz
201112-22:35:11,456 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:35:11,457 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_RPI".
201112-22:35:11,463 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_RPI/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-22:35:11,703 nipype.interface INFO:
stderr 2020-11-12T22:35:11.703837:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:35:11,704 nipype.interface INFO:
stderr 2020-11-12T22:35:11.704160:++ Authored by: KR Hammett & RW Cox
201112-22:35:12,352 nipype.interface INFO:
stderr 2020-11-12T22:35:12.351964:++ Output dataset ./sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-22:35:12,497 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:35:12,498 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_generate_ref".
201112-22:35:12,506 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_RPI/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_generate_ref/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-22:35:12,747 nipype.interface INFO:
stderr 2020-11-12T22:35:12.747081:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:35:12,747 nipype.interface INFO:
stderr 2020-11-12T22:35:12.747485:++ Authored by: RW Cox
201112-22:35:12,757 nipype.interface INFO:
stderr 2020-11-12T22:35:12.757056:++ Coarse del was 10, replaced with 3
201112-22:37:13,787 nipype.interface INFO:
stderr 2020-11-12T22:37:13.786854:++ Max displacement in automask = 2.81 (mm) at sub-brick 133
201112-22:37:13,787 nipype.interface INFO:
stderr 2020-11-12T22:37:13.787546:++ Max delta displ in automask = 1.20 (mm) at sub-brick 129
201112-22:37:19,200 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:37:19,202 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_motion".
201112-22:37:19,209 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_motion/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-22:37:19,461 nipype.interface INFO:
stderr 2020-11-12T22:37:19.461730:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:37:19,462 nipype.interface INFO:
stderr 2020-11-12T22:37:19.462232:++ Authored by: KR Hammett & RW Cox
201112-22:37:20,325 nipype.interface INFO:
stderr 2020-11-12T22:37:20.325179:++ Output dataset ./sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-22:37:20,503 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:37:20,505 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_motion_correct_mcflirt".
201112-22:37:20,512 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_reorient/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_motion_correct_mcflirt/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_get_mean_motion/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:37:43,161 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:37:43,170 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_motion_correct".
201112-22:37:43,178 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:37:43,407 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_motion_correct".
201112-22:37:43,408 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_mean_skull".
201112-22:37:43,414 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_mean_skull/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-22:37:43,663 nipype.interface INFO:
stderr 2020-11-12T22:37:43.663405:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:37:43,663 nipype.interface INFO:
stderr 2020-11-12T22:37:43.663746:++ Authored by: KR Hammett & RW Cox
201112-22:37:44,352 nipype.interface INFO:
stderr 2020-11-12T22:37:44.352239:++ Output dataset ./sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-22:37:44,505 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:37:44,507 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass".
201112-22:37:44,513 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_mean_skull/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:37:46,331 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:37:46,333 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_dilate".
201112-22:37:46,338 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_dilate/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:37:46,998 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:37:47,0 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_mask".
201112-22:37:47,6 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_dilate/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_mask/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:37:47,412 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:37:47,413 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/unifize".
201112-22:37:47,419 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/unifize/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:37:47,671 nipype.interface INFO:
stderr 2020-11-12T22:37:47.671172:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:39:04,964 nipype.interface INFO:
stderr 2020-11-12T22:39:04.964006: + Pre-processing: IAV..UW[s4566]Im
201112-22:39:04,980 nipype.interface INFO:
stderr 2020-11-12T22:39:04.979984:++ Output dataset ./uni.nii.gz
201112-22:39:04,980 nipype.interface INFO:
stderr 2020-11-12T22:39:04.980469:++ ===== Elapsed = 77.3 sec
201112-22:39:05,148 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:39:05,150 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass".
201112-22:39:05,156 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:39:05,401 nipype.interface INFO:
stderr 2020-11-12T22:39:05.401752:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:39:05,402 nipype.interface INFO:
stderr 2020-11-12T22:39:05.402274:++ Authored by: Emperor Zhark
201112-22:39:05,404 nipype.interface INFO:
stderr 2020-11-12T22:39:05.404569:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:39:05,409 nipype.interface INFO:
stderr 2020-11-12T22:39:05.409547:++ Forming automask
201112-22:39:05,411 nipype.interface INFO:
stderr 2020-11-12T22:39:05.411381: + Fixed clip level = 411.150818
201112-22:39:05,414 nipype.interface INFO:
stderr 2020-11-12T22:39:05.414696: + Used gradual clip level = 366.644409 .. 517.057617
201112-22:39:05,414 nipype.interface INFO:
stderr 2020-11-12T22:39:05.414904: + Number voxels above clip level = 31754
201112-22:39:05,415 nipype.interface INFO:
stderr 2020-11-12T22:39:05.415070: + Clustering voxels ...
201112-22:39:05,416 nipype.interface INFO:
stderr 2020-11-12T22:39:05.416195: + Largest cluster has 31754 voxels
201112-22:39:05,417 nipype.interface INFO:
stderr 2020-11-12T22:39:05.417564: + Clustering voxels ...
201112-22:39:05,418 nipype.interface INFO:
stderr 2020-11-12T22:39:05.418704: + Largest cluster has 31450 voxels
201112-22:39:05,422 nipype.interface INFO:
stderr 2020-11-12T22:39:05.422363: + Filled 669 voxels in small holes; now have 32119 voxels
201112-22:39:05,426 nipype.interface INFO:
stderr 2020-11-12T22:39:05.426759: + Filled 3 voxels in large holes; now have 32122 voxels
201112-22:39:05,428 nipype.interface INFO:
stderr 2020-11-12T22:39:05.428037: + Clustering voxels ...
201112-22:39:05,429 nipype.interface INFO:
stderr 2020-11-12T22:39:05.429156: + Largest cluster has 32121 voxels
201112-22:39:05,429 nipype.interface INFO:
stderr 2020-11-12T22:39:05.429389: + Clustering non-brain voxels ...
201112-22:39:05,429 nipype.interface INFO:
stderr 2020-11-12T22:39:05.429536: + Clustering voxels ...
201112-22:39:05,432 nipype.interface INFO:
stderr 2020-11-12T22:39:05.432343: + Largest cluster has 107058 voxels
201112-22:39:05,432 nipype.interface INFO:
stderr 2020-11-12T22:39:05.432675: + Mask now has 32206 voxels
201112-22:39:05,432 nipype.interface INFO:
stderr 2020-11-12T22:39:05.432830:++ Dilating automask
201112-22:39:05,440 nipype.interface INFO:
stderr 2020-11-12T22:39:05.440607: + Clustering voxels ...
201112-22:39:05,443 nipype.interface INFO:
stderr 2020-11-12T22:39:05.443210: + Largest cluster has 100855 voxels
201112-22:39:05,443 nipype.interface INFO:
stderr 2020-11-12T22:39:05.443547:++ 38409 voxels in the mask [out of 139264: 27.58%]
201112-22:39:05,443 nipype.interface INFO:
stderr 2020-11-12T22:39:05.443733:++ first 10 x-planes are zero [from R]
201112-22:39:05,443 nipype.interface INFO:
stderr 2020-11-12T22:39:05.443894:++ last 9 x-planes are zero [from L]
201112-22:39:05,444 nipype.interface INFO:
stderr 2020-11-12T22:39:05.444036:++ first 2 y-planes are zero [from P]
201112-22:39:05,444 nipype.interface INFO:
stderr 2020-11-12T22:39:05.444182:++ last 5 y-planes are zero [from A]
201112-22:39:05,444 nipype.interface INFO:
stderr 2020-11-12T22:39:05.444314:++ first 0 z-planes are zero [from I]
201112-22:39:05,444 nipype.interface INFO:
stderr 2020-11-12T22:39:05.444446:++ last 0 z-planes are zero [from S]
201112-22:39:05,448 nipype.interface INFO:
stderr 2020-11-12T22:39:05.448309:++ Output dataset ./uni_mask.nii.gz
201112-22:39:05,448 nipype.interface INFO:
stderr 2020-11-12T22:39:05.448499:++ applying mask to original data
201112-22:39:05,449 nipype.interface INFO:
stderr 2020-11-12T22:39:05.449199:++ Writing masked data
201112-22:39:05,463 nipype.interface INFO:
stderr 2020-11-12T22:39:05.463430:++ Output dataset ./uni_masked.nii.gz
201112-22:39:05,463 nipype.interface INFO:
stderr 2020-11-12T22:39:05.463703:++ CPU time = 0.000000 sec
201112-22:39:05,611 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:39:05,613 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks".
201112-22:39:05,618 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_first_pass/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:39:06,13 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:39:06,14 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-22:39:06,19 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-22:39:06,250 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-22:39:06,251 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-22:39:06,257 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:39:06,503 nipype.interface INFO:
stderr 2020-11-12T22:39:06.503362:++ no -frac option: defaulting to -union
201112-22:39:06,503 nipype.interface INFO:
stderr 2020-11-12T22:39:06.503676:++ processing 1 input dataset(s), NN=2...
201112-22:39:06,503 nipype.interface INFO:
stderr 2020-11-12T22:39:06.503842:++ padding all datasets by 0 (for dilations)
201112-22:39:06,508 nipype.interface INFO:
stderr 2020-11-12T22:39:06.508258:++ frac 0 over 1 volumes gives min count 0
201112-22:39:06,508 nipype.interface INFO:
stderr 2020-11-12T22:39:06.508661:++ voxel limits: 0 clipped, 38353 survived, 100911 were zero
201112-22:39:06,508 nipype.interface INFO:
stderr 2020-11-12T22:39:06.508837:++ writing result sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-22:39:06,512 nipype.interface INFO:
stderr 2020-11-12T22:39:06.512859:++ Output dataset ./sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-22:39:06,660 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-22:39:06,662 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_functional_brain_mask".
201112-22:39:06,669 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:39:06,899 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask".
201112-22:39:06,901 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/functional_brain_mask_derivative_0".
201112-22:39:06,905 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-22:39:07,115 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-22:39:07,120 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:39:07,609 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201112-22:39:07,626 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.functional_brain_mask_derivative_0".
201112-22:39:07,627 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_extract_brain".
201112-22:39:07,635 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_motion_correct_mcflirt/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:39:07,875 nipype.interface INFO:
stderr 2020-11-12T22:39:07.875875:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:39:07,876 nipype.interface INFO:
stderr 2020-11-12T22:39:07.876196:++ Authored by: A cast of thousands
201112-22:39:11,340 nipype.interface INFO:
stderr 2020-11-12T22:39:11.340892:++ Output dataset ./sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:39:11,517 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:39:11,519 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize".
201112-22:39:11,524 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/func_extract_brain/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-22:39:14,3 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:39:14,5 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-22:39:14,11 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:39:14,938 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_mean".
201112-22:39:14,940 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-22:39:14,945 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:39:15,184 nipype.interface INFO:
stderr 2020-11-12T22:39:15.184199:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:39:15,184 nipype.interface INFO:
stderr 2020-11-12T22:39:15.184492:++ Authored by: KR Hammett & RW Cox
201112-22:39:15,810 nipype.interface INFO:
stderr 2020-11-12T22:39:15.810462:++ Output dataset ./sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:39:15,965 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.functional_mean".
201112-22:39:15,966 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_ms_run-1/std_dev".
201112-22:39:15,973 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_ms_run-1/std_dev/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:39:16,216 nipype.interface INFO:
stderr 2020-11-12T22:39:16.216831:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:39:16,217 nipype.interface INFO:
stderr 2020-11-12T22:39:16.217449:++ Authored by: KR Hammett & RW Cox
201112-22:39:16,790 nipype.interface INFO:
stderr 2020-11-12T22:39:16.790300:++ Output dataset ./sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:39:16,966 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev".
201112-22:39:16,967 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_functional_preprocessed".
201112-22:39:16,974 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:39:17,204 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed".
201112-22:39:17,206 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mask_normalize".
201112-22:39:17,213 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mask_normalize/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:39:18,311 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:39:18,312 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_functional_preprocessed_mask".
201112-22:39:18,319 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:39:18,553 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed_mask".
201112-22:39:18,555 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean".
201112-22:39:18,561 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:39:18,801 nipype.interface INFO:
stderr 2020-11-12T22:39:18.801826:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:39:18,802 nipype.interface INFO:
stderr 2020-11-12T22:39:18.802350:++ Authored by: KR Hammett & RW Cox
201112-22:39:19,399 nipype.interface INFO:
stderr 2020-11-12T22:39:19.399755:++ Output dataset ./sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-22:39:19,580 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:39:19,583 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_mean_functional".
201112-22:39:19,590 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:39:19,824 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_mean_functional".
201112-22:39:19,826 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/norm_motion_params".
201112-22:39:19,832 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:39:20,64 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:39:20,65 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_slice_time_corrected".
201112-22:39:20,72 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:39:20,305 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_slice_time_corrected".
201112-22:39:20,307 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_raw_functional".
201112-22:39:20,321 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:39:20,677 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_raw_functional".
201112-22:39:20,679 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_ms_run-1/check_func_scan".
201112-22:39:20,705 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:39:20,936 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.check_func_scan".
201112-22:39:20,946 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_matching_run-3/select_scan_params".
201112-22:39:20,972 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:39:21,205 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.select_scan_params".
201112-22:39:21,215 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_matching_run-3/s3_scan_params".
201112-22:39:21,223 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:39:21,455 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.s3_scan_params".
201112-22:39:21,459 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.scan_params_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/scan_params_0".
201112-22:39:21,467 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:39:21,700 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.scan_params_0".
201112-22:39:21,703 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_matching_run-3/selectrest".
201112-22:39:21,729 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:39:21,963 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.selectrest".
201112-22:39:21,973 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_matching_run-3/check_for_s3".
201112-22:39:21,978 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:39:22,267 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.check_for_s3".
201112-22:39:22,268 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-071_ses-1/edit_func_0/_scan_matching_run-3/func_get_idx".
201112-22:39:22,273 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:39:22,504 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.edit_func_0.func_get_idx".
201112-22:39:22,506 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-071_ses-1/edit_func_0/_scan_matching_run-3/func_drop_trs".
201112-22:39:22,512 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-071/ses-1/func/sub-071_ses-1_task-matching_run-3_bold.nii.gz[0..98] -expr "a" -prefix sub-071_ses-1_task-matching_run-3_bold_calc.nii.gz
201112-22:39:22,759 nipype.interface INFO:
stderr 2020-11-12T22:39:22.758994:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:39:22,759 nipype.interface INFO:
stderr 2020-11-12T22:39:22.759357:++ Authored by: A cast of thousands
201112-22:39:27,50 nipype.interface INFO:
stderr 2020-11-12T22:39:27.050806:++ Output dataset ./sub-071_ses-1_task-matching_run-3_bold_calc.nii.gz
201112-22:39:27,225 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.edit_func_0.func_drop_trs".
201112-22:39:27,226 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique".
201112-22:39:27,261 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-071_ses-1_task-matching_run-3_bold_calc.nii.gz
201112-22:39:27,505 nipype.interface INFO:
stderr 2020-11-12T22:39:27.505469:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:39:27,505 nipype.interface INFO:
stderr 2020-11-12T22:39:27.505780:++ Authored by: RW Cox
201112-22:39:27,508 nipype.interface INFO:
stderr 2020-11-12T22:39:27.508070:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-071_ses-1_task-matching_run-3_bold_calc.nii.gz
201112-22:39:27,508 nipype.interface INFO:
stderr 2020-11-12T22:39:27.508649: + deoblique
201112-22:39:27,508 nipype.interface INFO:
stderr 2020-11-12T22:39:27.508825: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-071_ses-1_task-matching_run-3_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-071_ses-1_task-matching_run-3_bold_calc.nii.gz in NIFTI storage)
201112-22:39:30,345 nipype.interface INFO:
stderr 2020-11-12T22:39:30.345867:++ 3drefit processed 1 datasets
201112-22:39:30,527 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:39:30,528 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_reorient".
201112-22:39:30,534 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-1_task-matching_run-3_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_reorient/sub-071_ses-1_task-matching_run-3_bold_calc.nii.gz
201112-22:39:33,950 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:39:33,952 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_RPI".
201112-22:39:33,959 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-3_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_RPI/sub-071_ses-1_task-matching_run-3_bold_calc_resample.nii.gz
201112-22:39:34,201 nipype.interface INFO:
stderr 2020-11-12T22:39:34.201477:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:39:34,201 nipype.interface INFO:
stderr 2020-11-12T22:39:34.201774:++ Authored by: KR Hammett & RW Cox
201112-22:39:34,561 nipype.interface INFO:
stderr 2020-11-12T22:39:34.561240:++ Output dataset ./sub-071_ses-1_task-matching_run-3_bold_calc_resample_tstat.nii.gz
201112-22:39:34,709 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:39:34,711 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_generate_ref".
201112-22:39:34,718 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-1_task-matching_run-3_bold_calc_resample.1D -1Dmatrix_save sub-071_ses-1_task-matching_run-3_bold_calc_resample.aff12.1D -prefix sub-071_ses-1_task-matching_run-3_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_RPI/sub-071_ses-1_task-matching_run-3_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-1_task-matching_run-3_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_generate_ref/sub-071_ses-1_task-matching_run-3_bold_calc_resample.nii.gz
201112-22:39:34,963 nipype.interface INFO:
stderr 2020-11-12T22:39:34.963005:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:39:34,963 nipype.interface INFO:
stderr 2020-11-12T22:39:34.963381:++ Authored by: RW Cox
201112-22:39:34,974 nipype.interface INFO:
stderr 2020-11-12T22:39:34.974326:++ Coarse del was 10, replaced with 3
201112-22:40:58,438 nipype.interface INFO:
stderr 2020-11-12T22:40:58.438226:++ Max displacement in automask = 4.71 (mm) at sub-brick 45
201112-22:40:58,438 nipype.interface INFO:
stderr 2020-11-12T22:40:58.438676:++ Max delta displ in automask = 2.95 (mm) at sub-brick 45
201112-22:41:01,267 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:41:01,269 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_motion".
201112-22:41:01,275 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-3_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_motion/sub-071_ses-1_task-matching_run-3_bold_calc_resample_volreg.nii.gz
201112-22:41:01,521 nipype.interface INFO:
stderr 2020-11-12T22:41:01.521517:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:41:01,521 nipype.interface INFO:
stderr 2020-11-12T22:41:01.521898:++ Authored by: KR Hammett & RW Cox
201112-22:41:01,887 nipype.interface INFO:
stderr 2020-11-12T22:41:01.887745:++ Output dataset ./sub-071_ses-1_task-matching_run-3_bold_calc_resample_volreg_tstat.nii.gz
201112-22:41:02,34 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:41:02,36 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_motion_correct_mcflirt".
201112-22:41:02,41 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_reorient/sub-071_ses-1_task-matching_run-3_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_motion_correct_mcflirt/sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_motion/sub-071_ses-1_task-matching_run-3_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:41:19,973 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:41:19,981 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/calculate_FDJ".
201112-22:41:19,986 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:41:20,212 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:41:20,213 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_frame_wise_displacement_jenkinson".
201112-22:41:20,218 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:41:20,450 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_jenkinson".
201112-22:41:20,452 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_max_displacement".
201112-22:41:20,460 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:41:20,691 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_max_displacement".
201112-22:41:20,693 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_coordinate_transformation".
201112-22:41:20,709 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:41:20,966 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_coordinate_transformation".
201112-22:41:20,975 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_mean_skull".
201112-22:41:20,982 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_mean_skull/sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf.nii.gz
201112-22:41:21,232 nipype.interface INFO:
stderr 2020-11-12T22:41:21.232345:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:41:21,232 nipype.interface INFO:
stderr 2020-11-12T22:41:21.232815:++ Authored by: KR Hammett & RW Cox
201112-22:41:21,625 nipype.interface INFO:
stderr 2020-11-12T22:41:21.625913:++ Output dataset ./sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat.nii.gz
201112-22:41:21,775 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:41:21,777 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass".
201112-22:41:21,782 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_mean_skull/sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:41:23,594 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:41:23,596 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_dilate".
201112-22:41:23,601 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_dilate/sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:41:24,255 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:41:24,256 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_mask".
201112-22:41:24,262 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_dilate/sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_mask/sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:41:24,675 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:41:24,676 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/unifize".
201112-22:41:24,682 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/unifize/sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:41:24,923 nipype.interface INFO:
stderr 2020-11-12T22:41:24.923305:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:42:42,576 nipype.interface INFO:
stderr 2020-11-12T22:42:42.576430: + Pre-processing: IAV..UW[s4508]Im
201112-22:42:42,592 nipype.interface INFO:
stderr 2020-11-12T22:42:42.592434:++ Output dataset ./uni.nii.gz
201112-22:42:42,592 nipype.interface INFO:
stderr 2020-11-12T22:42:42.592649:++ ===== Elapsed = 77.7 sec
201112-22:42:42,763 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:42:42,764 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass".
201112-22:42:42,770 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:42:43,21 nipype.interface INFO:
stderr 2020-11-12T22:42:43.021616:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:42:43,22 nipype.interface INFO:
stderr 2020-11-12T22:42:43.022221:++ Authored by: Emperor Zhark
201112-22:42:43,24 nipype.interface INFO:
stderr 2020-11-12T22:42:43.024901:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:42:43,30 nipype.interface INFO:
stderr 2020-11-12T22:42:43.030838:++ Forming automask
201112-22:42:43,32 nipype.interface INFO:
stderr 2020-11-12T22:42:43.032763: + Fixed clip level = 406.347107
201112-22:42:43,37 nipype.interface INFO:
stderr 2020-11-12T22:42:43.037015: + Used gradual clip level = 368.275482 .. 515.092834
201112-22:42:43,37 nipype.interface INFO:
stderr 2020-11-12T22:42:43.037270: + Number voxels above clip level = 32107
201112-22:42:43,37 nipype.interface INFO:
stderr 2020-11-12T22:42:43.037456: + Clustering voxels ...
201112-22:42:43,38 nipype.interface INFO:
stderr 2020-11-12T22:42:43.038913: + Largest cluster has 32104 voxels
201112-22:42:43,40 nipype.interface INFO:
stderr 2020-11-12T22:42:43.040800: + Clustering voxels ...
201112-22:42:43,41 nipype.interface INFO:
stderr 2020-11-12T22:42:43.041960: + Largest cluster has 31827 voxels
201112-22:42:43,45 nipype.interface INFO:
stderr 2020-11-12T22:42:43.045317: + Filled 609 voxels in small holes; now have 32436 voxels
201112-22:42:43,47 nipype.interface INFO:
stderr 2020-11-12T22:42:43.047517: + Filled 2 voxels in large holes; now have 32438 voxels
201112-22:42:43,48 nipype.interface INFO:
stderr 2020-11-12T22:42:43.048784: + Clustering voxels ...
201112-22:42:43,49 nipype.interface INFO:
stderr 2020-11-12T22:42:43.049898: + Largest cluster has 32437 voxels
201112-22:42:43,50 nipype.interface INFO:
stderr 2020-11-12T22:42:43.050133: + Clustering non-brain voxels ...
201112-22:42:43,50 nipype.interface INFO:
stderr 2020-11-12T22:42:43.050273: + Clustering voxels ...
201112-22:42:43,53 nipype.interface INFO:
stderr 2020-11-12T22:42:43.053071: + Largest cluster has 106738 voxels
201112-22:42:43,53 nipype.interface INFO:
stderr 2020-11-12T22:42:43.053395: + Mask now has 32526 voxels
201112-22:42:43,53 nipype.interface INFO:
stderr 2020-11-12T22:42:43.053545:++ Dilating automask
201112-22:42:43,61 nipype.interface INFO:
stderr 2020-11-12T22:42:43.060986: + Clustering voxels ...
201112-22:42:43,63 nipype.interface INFO:
stderr 2020-11-12T22:42:43.063325: + Largest cluster has 100534 voxels
201112-22:42:43,63 nipype.interface INFO:
stderr 2020-11-12T22:42:43.063654:++ 38730 voxels in the mask [out of 139264: 27.81%]
201112-22:42:43,63 nipype.interface INFO:
stderr 2020-11-12T22:42:43.063822:++ first 11 x-planes are zero [from R]
201112-22:42:43,63 nipype.interface INFO:
stderr 2020-11-12T22:42:43.063980:++ last 9 x-planes are zero [from L]
201112-22:42:43,64 nipype.interface INFO:
stderr 2020-11-12T22:42:43.064126:++ first 1 y-planes are zero [from P]
201112-22:42:43,64 nipype.interface INFO:
stderr 2020-11-12T22:42:43.064266:++ last 5 y-planes are zero [from A]
201112-22:42:43,64 nipype.interface INFO:
stderr 2020-11-12T22:42:43.064395:++ first 0 z-planes are zero [from I]
201112-22:42:43,64 nipype.interface INFO:
stderr 2020-11-12T22:42:43.064524:++ last 0 z-planes are zero [from S]
201112-22:42:43,68 nipype.interface INFO:
stderr 2020-11-12T22:42:43.068711:++ Output dataset ./uni_mask.nii.gz
201112-22:42:43,68 nipype.interface INFO:
stderr 2020-11-12T22:42:43.068882:++ applying mask to original data
201112-22:42:43,69 nipype.interface INFO:
stderr 2020-11-12T22:42:43.069565:++ Writing masked data
201112-22:42:43,85 nipype.interface INFO:
stderr 2020-11-12T22:42:43.084992:++ Output dataset ./uni_masked.nii.gz
201112-22:42:43,85 nipype.interface INFO:
stderr 2020-11-12T22:42:43.085415:++ CPU time = 0.000000 sec
201112-22:42:43,232 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:42:43,233 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks".
201112-22:42:43,240 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:42:43,634 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:42:43,636 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/cal_DVARS".
201112-22:42:43,644 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-22:42:44,216 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-22:42:44,217 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_extract_brain".
201112-22:42:44,224 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_motion_correct_mcflirt/sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc.nii.gz
201112-22:42:44,464 nipype.interface INFO:
stderr 2020-11-12T22:42:44.464366:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:42:44,464 nipype.interface INFO:
stderr 2020-11-12T22:42:44.464664:++ Authored by: A cast of thousands
201112-22:42:46,592 nipype.interface INFO:
stderr 2020-11-12T22:42:46.592384:++ Output dataset ./sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc.nii.gz
201112-22:42:46,766 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:42:46,767 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize".
201112-22:42:46,773 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_extract_brain/sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize/sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-22:42:48,587 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:42:48,588 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mask_normalize".
201112-22:42:48,593 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize/sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mask_normalize/sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:42:49,448 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:42:49,449 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean".
201112-22:42:49,455 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean/sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc.nii.gz
201112-22:42:49,702 nipype.interface INFO:
stderr 2020-11-12T22:42:49.702498:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:42:49,702 nipype.interface INFO:
stderr 2020-11-12T22:42:49.702795:++ Authored by: KR Hammett & RW Cox
201112-22:42:49,942 nipype.interface INFO:
stderr 2020-11-12T22:42:49.942084:++ Output dataset ./sub-071_ses-1_task-matching_run-3_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-22:42:50,92 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:42:50,94 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/norm_motion_params".
201112-22:42:50,99 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:42:50,330 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:42:50,332 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_motion_0/_scan_matching_run-3/motion_plot".
201112-22:42:50,336 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-22:42:50,768 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_motion_0.motion_plot".
201112-22:42:50,769 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_qc___movement_trans_plot".
201112-22:42:50,776 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:42:50,990 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___movement_trans_plot/_scan_matching_run-3/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/movement_trans_plot/_scan_matching_run-3/motion_trans_plot.png
201112-22:42:51,7 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_trans_plot".
201112-22:42:51,8 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_qc___movement_rot_plot".
201112-22:42:51,15 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:42:51,224 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___movement_rot_plot/_scan_matching_run-3/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/movement_rot_plot/_scan_matching_run-3/motion_rot_plot.png
201112-22:42:51,243 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_rot_plot".
201112-22:42:51,245 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/calc_motion_parameters".
201112-22:42:51,253 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:42:51,485 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-22:42:51,486 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_motion_params".
201112-22:42:51,493 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:42:51,724 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_motion_params".
201112-22:42:51,725 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/calculate_FD".
201112-22:42:51,730 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-22:42:51,962 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-22:42:51,964 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_frame_wise_displacement_power".
201112-22:42:51,972 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:42:52,203 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_power".
201112-22:42:52,205 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/calc_power_parameters".
201112-22:42:52,211 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:42:52,444 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-22:42:52,445 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_power_params".
201112-22:42:52,453 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:42:52,683 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_power_params".
201112-22:42:52,685 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_movement_parameters".
201112-22:42:52,692 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:42:52,922 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_movement_parameters".
201112-22:42:52,923 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/func_despiked_0".
201112-22:42:52,929 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-071_ses-1_task-matching_run-3_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/func_despiked_0/sub-071_ses-1_task-matching_run-3_bold_calc.nii.gz
201112-22:42:53,177 nipype.interface INFO:
stderr 2020-11-12T22:42:53.177709:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:42:53,178 nipype.interface INFO:
stderr 2020-11-12T22:42:53.178061:++ Authored by: RW Cox
201112-22:42:53,180 nipype.interface INFO:
stderr 2020-11-12T22:42:53.180026:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:42:53,180 nipype.interface INFO:
stderr 2020-11-12T22:42:53.180026: such as /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/func_despiked_0/sub-071_ses-1_task-matching_run-3_bold_calc.nii.gz,
201112-22:42:53,180 nipype.interface INFO:
stderr 2020-11-12T22:42:53.180026: or viewing/combining it with volumes of differing obliquity,
201112-22:42:53,180 nipype.interface INFO:
stderr 2020-11-12T22:42:53.180026: you should consider running:
201112-22:42:53,180 nipype.interface INFO:
stderr 2020-11-12T22:42:53.180026: 3dWarp -deoblique
201112-22:42:53,180 nipype.interface INFO:
stderr 2020-11-12T22:42:53.180026: on this and other oblique datasets in the same session.
201112-22:42:53,180 nipype.interface INFO:
stderr 2020-11-12T22:42:53.180026: See 3dWarp -help for details.
201112-22:42:53,181 nipype.interface INFO:
stderr 2020-11-12T22:42:53.181152:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/func_despiked_0/sub-071_ses-1_task-matching_run-3_bold_calc.nii.gz is 25.736012 degrees from plumb.
201112-22:42:53,181 nipype.interface INFO:
stderr 2020-11-12T22:42:53.181339:++ Input dataset is in short format, but output will be in float format
201112-22:42:53,181 nipype.interface INFO:
stderr 2020-11-12T22:42:53.181509:++ ignoring first 0 time points, using last 99
201112-22:42:53,181 nipype.interface INFO:
stderr 2020-11-12T22:42:53.181677:++ using 99 time points => -corder 3
201112-22:42:53,181 nipype.interface INFO:
stderr 2020-11-12T22:42:53.181841:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/func_despiked_0/sub-071_ses-1_task-matching_run-3_bold_calc.nii.gz
201112-22:42:53,538 nipype.interface INFO:
stderr 2020-11-12T22:42:53.538918:++ 35888 voxels in the automask [out of 139264 in dataset]
201112-22:42:53,544 nipype.interface INFO:
stderr 2020-11-12T22:42:53.544366:++ 60364 voxels in the dilated automask [out of 139264 in dataset]
201112-22:42:53,552 nipype.interface INFO:
stderr 2020-11-12T22:42:53.552678:++ Procesing time series with OLD model fit algorithm
201112-22:42:53,552 nipype.interface INFO:
stderr 2020-11-12T22:42:53.552860:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-22:42:53,553 nipype.interface INFO:
stderr 2020-11-12T22:42:53.553018: + [ 3.457% .. 0.072% of normal distribution]
201112-22:42:53,553 nipype.interface INFO:
stderr 2020-11-12T22:42:53.553176: + [ 8.839% .. 3.125% of Laplace distribution]
201112-22:42:53,553 nipype.interface INFO:
stderr 2020-11-12T22:42:53.553330:++ start OpenMP thread #0
201112-22:42:57,489 nipype.interface INFO:
stderr 2020-11-12T22:42:57.489555:...........................
201112-22:42:57,490 nipype.interface INFO:
stderr 2020-11-12T22:42:57.490043:++ Elapsed despike time = 3s 937ms
201112-22:42:57,490 nipype.interface INFO:
stderr 2020-11-12T22:42:57.490215:
201112-22:42:57,490 nipype.interface INFO:
stderr 2020-11-12T22:42:57.490917:++ FINAL: 5976036 data points, 674693 edits [11.290%], 256985 big edits [4.300%]
201112-22:43:00,607 nipype.interface INFO:
stderr 2020-11-12T22:43:00.607451:++ Output dataset ./sub-071_ses-1_task-matching_run-3_bold_calc_despike.nii.gz
201112-22:43:00,794 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_despiked_0".
201112-22:43:00,796 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_matching_run-3/slice_timing".
201112-22:43:00,804 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:43:00,805 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_matching_run-3/slice_timing/sub-071_ses-1_task-matching_run-3_bold_calc_despike.nii.gz
201112-22:43:01,14 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:43:01,52 nipype.interface INFO:
stderr 2020-11-12T22:43:01.052493:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:43:01,55 nipype.interface INFO:
stderr 2020-11-12T22:43:01.055395:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:43:01,55 nipype.interface INFO:
stderr 2020-11-12T22:43:01.055395: such as /outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_matching_run-3/slice_timing/sub-071_ses-1_task-matching_run-3_bold_calc_despike.nii.gz,
201112-22:43:01,55 nipype.interface INFO:
stderr 2020-11-12T22:43:01.055395: or viewing/combining it with volumes of differing obliquity,
201112-22:43:01,55 nipype.interface INFO:
stderr 2020-11-12T22:43:01.055395: you should consider running:
201112-22:43:01,56 nipype.interface INFO:
stderr 2020-11-12T22:43:01.055395: 3dWarp -deoblique
201112-22:43:01,56 nipype.interface INFO:
stderr 2020-11-12T22:43:01.055395: on this and other oblique datasets in the same session.
201112-22:43:01,56 nipype.interface INFO:
stderr 2020-11-12T22:43:01.055395: See 3dWarp -help for details.
201112-22:43:01,56 nipype.interface INFO:
stderr 2020-11-12T22:43:01.056453:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_matching_run-3/slice_timing/sub-071_ses-1_task-matching_run-3_bold_calc_despike.nii.gz is 25.736012 degrees from plumb.
201112-22:43:04,725 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_slice_timing_correction_0.slice_timing".
201112-22:43:04,726 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique".
201112-22:43:04,773 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift.nii.gz
201112-22:43:05,20 nipype.interface INFO:
stderr 2020-11-12T22:43:05.020726:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:43:05,21 nipype.interface INFO:
stderr 2020-11-12T22:43:05.021255:++ Authored by: RW Cox
201112-22:43:05,33 nipype.interface INFO:
stderr 2020-11-12T22:43:05.033626:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift.nii.gz
201112-22:43:05,34 nipype.interface INFO:
stderr 2020-11-12T22:43:05.034719: + deoblique
201112-22:43:05,35 nipype.interface INFO:
stderr 2020-11-12T22:43:05.035058: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_deoblique/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-22:43:06,729 nipype.interface INFO:
stderr 2020-11-12T22:43:06.729324:++ 3drefit processed 1 datasets
201112-22:43:06,903 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:43:06,905 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_reorient".
201112-22:43:06,910 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_reorient/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift.nii.gz
201112-22:43:09,199 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:43:09,200 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_RPI".
201112-22:43:09,207 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_RPI/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample.nii.gz
201112-22:43:09,453 nipype.interface INFO:
stderr 2020-11-12T22:43:09.453009:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:43:09,453 nipype.interface INFO:
stderr 2020-11-12T22:43:09.453573:++ Authored by: KR Hammett & RW Cox
201112-22:43:09,917 nipype.interface INFO:
stderr 2020-11-12T22:43:09.917331:++ Output dataset ./sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-22:43:10,67 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:43:10,69 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_generate_ref".
201112-22:43:10,75 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_RPI/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_generate_ref/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample.nii.gz
201112-22:43:10,322 nipype.interface INFO:
stderr 2020-11-12T22:43:10.322851:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:43:10,323 nipype.interface INFO:
stderr 2020-11-12T22:43:10.323383:++ Authored by: RW Cox
201112-22:43:10,334 nipype.interface INFO:
stderr 2020-11-12T22:43:10.334685:++ Coarse del was 10, replaced with 3
201112-22:44:31,892 nipype.interface INFO:
stderr 2020-11-12T22:44:31.891983:++ Max displacement in automask = 2.70 (mm) at sub-brick 86
201112-22:44:31,892 nipype.interface INFO:
stderr 2020-11-12T22:44:31.892552:++ Max delta displ in automask = 1.66 (mm) at sub-brick 15
201112-22:44:35,594 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:44:35,596 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_motion".
201112-22:44:35,602 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_motion/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-22:44:35,851 nipype.interface INFO:
stderr 2020-11-12T22:44:35.851827:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:44:35,852 nipype.interface INFO:
stderr 2020-11-12T22:44:35.852297:++ Authored by: KR Hammett & RW Cox
201112-22:44:36,465 nipype.interface INFO:
stderr 2020-11-12T22:44:36.465428:++ Output dataset ./sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-22:44:36,617 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:44:36,618 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_motion_correct_mcflirt".
201112-22:44:36,626 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_reorient/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_motion_correct_mcflirt/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_get_mean_motion/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:44:52,725 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:44:52,733 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_motion_correct".
201112-22:44:52,740 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:44:52,969 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_motion_correct".
201112-22:44:52,971 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_mean_skull".
201112-22:44:52,977 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_mean_skull/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-22:44:53,221 nipype.interface INFO:
stderr 2020-11-12T22:44:53.221806:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:44:53,222 nipype.interface INFO:
stderr 2020-11-12T22:44:53.222160:++ Authored by: KR Hammett & RW Cox
201112-22:44:53,710 nipype.interface INFO:
stderr 2020-11-12T22:44:53.710007:++ Output dataset ./sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-22:44:53,862 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:44:53,864 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass".
201112-22:44:53,870 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_mean_skull/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:44:55,695 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:44:55,697 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_dilate".
201112-22:44:55,702 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_dilate/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:44:56,359 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:44:56,361 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_mask".
201112-22:44:56,368 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_dilate/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_mask/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:44:56,784 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:44:56,785 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/unifize".
201112-22:44:56,791 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/unifize/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:44:57,40 nipype.interface INFO:
stderr 2020-11-12T22:44:57.040281:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:46:15,79 nipype.interface INFO:
stderr 2020-11-12T22:46:15.079493: + Pre-processing: IAV..UW[s4488]Im
201112-22:46:15,94 nipype.interface INFO:
stderr 2020-11-12T22:46:15.094456:++ Output dataset ./uni.nii.gz
201112-22:46:15,94 nipype.interface INFO:
stderr 2020-11-12T22:46:15.094746:++ ===== Elapsed = 78.1 sec
201112-22:46:15,270 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:46:15,272 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass".
201112-22:46:15,277 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:46:15,531 nipype.interface INFO:
stderr 2020-11-12T22:46:15.531638:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:46:15,532 nipype.interface INFO:
stderr 2020-11-12T22:46:15.532092:++ Authored by: Emperor Zhark
201112-22:46:15,534 nipype.interface INFO:
stderr 2020-11-12T22:46:15.534449:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass/uni.nii.gz
201112-22:46:15,539 nipype.interface INFO:
stderr 2020-11-12T22:46:15.539758:++ Forming automask
201112-22:46:15,541 nipype.interface INFO:
stderr 2020-11-12T22:46:15.541781: + Fixed clip level = 406.313782
201112-22:46:15,546 nipype.interface INFO:
stderr 2020-11-12T22:46:15.546422: + Used gradual clip level = 369.430695 .. 514.825745
201112-22:46:15,546 nipype.interface INFO:
stderr 2020-11-12T22:46:15.546685: + Number voxels above clip level = 32109
201112-22:46:15,546 nipype.interface INFO:
stderr 2020-11-12T22:46:15.546880: + Clustering voxels ...
201112-22:46:15,548 nipype.interface INFO:
stderr 2020-11-12T22:46:15.548407: + Largest cluster has 32106 voxels
201112-22:46:15,550 nipype.interface INFO:
stderr 2020-11-12T22:46:15.550463: + Clustering voxels ...
201112-22:46:15,551 nipype.interface INFO:
stderr 2020-11-12T22:46:15.551675: + Largest cluster has 31820 voxels
201112-22:46:15,555 nipype.interface INFO:
stderr 2020-11-12T22:46:15.555083: + Filled 608 voxels in small holes; now have 32428 voxels
201112-22:46:15,557 nipype.interface INFO:
stderr 2020-11-12T22:46:15.557308: + Clustering voxels ...
201112-22:46:15,558 nipype.interface INFO:
stderr 2020-11-12T22:46:15.558444: + Largest cluster has 32427 voxels
201112-22:46:15,558 nipype.interface INFO:
stderr 2020-11-12T22:46:15.558672: + Clustering non-brain voxels ...
201112-22:46:15,558 nipype.interface INFO:
stderr 2020-11-12T22:46:15.558814: + Clustering voxels ...
201112-22:46:15,561 nipype.interface INFO:
stderr 2020-11-12T22:46:15.561650: + Largest cluster has 106744 voxels
201112-22:46:15,561 nipype.interface INFO:
stderr 2020-11-12T22:46:15.561978: + Mask now has 32520 voxels
201112-22:46:15,562 nipype.interface INFO:
stderr 2020-11-12T22:46:15.562141:++ Dilating automask
201112-22:46:15,569 nipype.interface INFO:
stderr 2020-11-12T22:46:15.569007: + Clustering voxels ...
201112-22:46:15,571 nipype.interface INFO:
stderr 2020-11-12T22:46:15.571627: + Largest cluster has 100539 voxels
201112-22:46:15,571 nipype.interface INFO:
stderr 2020-11-12T22:46:15.571963:++ 38725 voxels in the mask [out of 139264: 27.81%]
201112-22:46:15,572 nipype.interface INFO:
stderr 2020-11-12T22:46:15.572338:++ first 11 x-planes are zero [from R]
201112-22:46:15,572 nipype.interface INFO:
stderr 2020-11-12T22:46:15.572522:++ last 9 x-planes are zero [from L]
201112-22:46:15,572 nipype.interface INFO:
stderr 2020-11-12T22:46:15.572680:++ first 1 y-planes are zero [from P]
201112-22:46:15,572 nipype.interface INFO:
stderr 2020-11-12T22:46:15.572822:++ last 5 y-planes are zero [from A]
201112-22:46:15,572 nipype.interface INFO:
stderr 2020-11-12T22:46:15.572953:++ first 0 z-planes are zero [from I]
201112-22:46:15,573 nipype.interface INFO:
stderr 2020-11-12T22:46:15.573094:++ last 0 z-planes are zero [from S]
201112-22:46:15,577 nipype.interface INFO:
stderr 2020-11-12T22:46:15.576993:++ Output dataset ./uni_mask.nii.gz
201112-22:46:15,577 nipype.interface INFO:
stderr 2020-11-12T22:46:15.577170:++ applying mask to original data
201112-22:46:15,577 nipype.interface INFO:
stderr 2020-11-12T22:46:15.577839:++ Writing masked data
201112-22:46:15,592 nipype.interface INFO:
stderr 2020-11-12T22:46:15.592337:++ Output dataset ./uni_masked.nii.gz
201112-22:46:15,592 nipype.interface INFO:
stderr 2020-11-12T22:46:15.592616:++ CPU time = 0.000000 sec
201112-22:46:15,739 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:46:15,741 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks".
201112-22:46:15,748 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_first_pass/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:46:16,148 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:46:16,149 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-22:46:16,154 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-22:46:16,385 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-22:46:16,386 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-22:46:16,393 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:46:16,635 nipype.interface INFO:
stderr 2020-11-12T22:46:16.635724:++ no -frac option: defaulting to -union
201112-22:46:16,636 nipype.interface INFO:
stderr 2020-11-12T22:46:16.636026:++ processing 1 input dataset(s), NN=2...
201112-22:46:16,636 nipype.interface INFO:
stderr 2020-11-12T22:46:16.636198:++ padding all datasets by 0 (for dilations)
201112-22:46:16,640 nipype.interface INFO:
stderr 2020-11-12T22:46:16.640671:++ frac 0 over 1 volumes gives min count 0
201112-22:46:16,641 nipype.interface INFO:
stderr 2020-11-12T22:46:16.641069:++ voxel limits: 0 clipped, 38664 survived, 100600 were zero
201112-22:46:16,641 nipype.interface INFO:
stderr 2020-11-12T22:46:16.641236:++ writing result sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-22:46:16,645 nipype.interface INFO:
stderr 2020-11-12T22:46:16.645262:++ Output dataset ./sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-22:46:16,795 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-22:46:16,796 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_functional_brain_mask".
201112-22:46:16,803 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:46:17,33 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask".
201112-22:46:17,35 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/functional_brain_mask_derivative_0".
201112-22:46:17,39 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-22:46:17,252 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-22:46:17,257 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:46:17,732 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201112-22:46:17,748 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.functional_brain_mask_derivative_0".
201112-22:46:17,749 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_extract_brain".
201112-22:46:17,758 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_motion_correct_mcflirt/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:46:18,3 nipype.interface INFO:
stderr 2020-11-12T22:46:18.003809:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:46:18,4 nipype.interface INFO:
stderr 2020-11-12T22:46:18.004126:++ Authored by: A cast of thousands
201112-22:46:20,395 nipype.interface INFO:
stderr 2020-11-12T22:46:20.395295:++ Output dataset ./sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:46:20,575 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:46:20,576 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize".
201112-22:46:20,581 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/func_extract_brain/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-22:46:22,428 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:46:22,430 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-22:46:22,436 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:46:23,192 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_mean".
201112-22:46:23,194 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-22:46:23,198 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:46:23,440 nipype.interface INFO:
stderr 2020-11-12T22:46:23.440877:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:46:23,441 nipype.interface INFO:
stderr 2020-11-12T22:46:23.441179:++ Authored by: KR Hammett & RW Cox
201112-22:46:23,881 nipype.interface INFO:
stderr 2020-11-12T22:46:23.881260:++ Output dataset ./sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:46:24,34 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.functional_mean".
201112-22:46:24,35 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-3/std_dev".
201112-22:46:24,42 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-3/std_dev/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:46:24,285 nipype.interface INFO:
stderr 2020-11-12T22:46:24.284992:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:46:24,285 nipype.interface INFO:
stderr 2020-11-12T22:46:24.285302:++ Authored by: KR Hammett & RW Cox
201112-22:46:24,694 nipype.interface INFO:
stderr 2020-11-12T22:46:24.694665:++ Output dataset ./sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:46:24,847 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev".
201112-22:46:24,849 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_functional_preprocessed".
201112-22:46:24,856 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:46:25,81 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed".
201112-22:46:25,83 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mask_normalize".
201112-22:46:25,88 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mask_normalize/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:46:25,974 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:46:25,975 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_functional_preprocessed_mask".
201112-22:46:25,982 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:46:26,209 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed_mask".
201112-22:46:26,211 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean".
201112-22:46:26,217 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:46:26,461 nipype.interface INFO:
stderr 2020-11-12T22:46:26.461731:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:46:26,462 nipype.interface INFO:
stderr 2020-11-12T22:46:26.462039:++ Authored by: KR Hammett & RW Cox
201112-22:46:26,886 nipype.interface INFO:
stderr 2020-11-12T22:46:26.886691:++ Output dataset ./sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-22:46:27,37 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:46:27,38 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_mean_functional".
201112-22:46:27,45 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:46:27,272 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_mean_functional".
201112-22:46:27,274 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/norm_motion_params".
201112-22:46:27,279 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:46:27,512 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:46:27,513 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_slice_time_corrected".
201112-22:46:27,521 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:46:27,750 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_slice_time_corrected".
201112-22:46:27,752 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_raw_functional".
201112-22:46:27,765 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:46:28,80 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_raw_functional".
201112-22:46:28,82 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_matching_run-3/check_func_scan".
201112-22:46:28,114 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:46:28,346 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.check_func_scan".
201112-22:46:28,356 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_matching_run-2/select_scan_params".
201112-22:46:28,381 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:46:28,617 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.select_scan_params".
201112-22:46:28,627 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_matching_run-2/s3_scan_params".
201112-22:46:28,635 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:46:28,865 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.s3_scan_params".
201112-22:46:28,868 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.scan_params_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/scan_params_0".
201112-22:46:28,876 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:46:29,105 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.scan_params_0".
201112-22:46:29,106 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_matching_run-2/selectrest".
201112-22:46:29,133 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:46:29,366 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.selectrest".
201112-22:46:29,375 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_matching_run-2/check_for_s3".
201112-22:46:29,380 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:46:29,704 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.check_for_s3".
201112-22:46:29,705 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-071_ses-1/edit_func_0/_scan_matching_run-2/func_get_idx".
201112-22:46:29,712 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:46:29,944 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.edit_func_0.func_get_idx".
201112-22:46:29,945 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-071_ses-1/edit_func_0/_scan_matching_run-2/func_drop_trs".
201112-22:46:29,951 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-071/ses-1/func/sub-071_ses-1_task-matching_run-2_bold.nii.gz[0..98] -expr "a" -prefix sub-071_ses-1_task-matching_run-2_bold_calc.nii.gz
201112-22:46:30,199 nipype.interface INFO:
stderr 2020-11-12T22:46:30.199808:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:46:30,200 nipype.interface INFO:
stderr 2020-11-12T22:46:30.200179:++ Authored by: A cast of thousands
201112-22:46:34,491 nipype.interface INFO:
stderr 2020-11-12T22:46:34.491078:++ Output dataset ./sub-071_ses-1_task-matching_run-2_bold_calc.nii.gz
201112-22:46:34,669 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.edit_func_0.func_drop_trs".
201112-22:46:34,670 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique".
201112-22:46:34,708 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-071_ses-1_task-matching_run-2_bold_calc.nii.gz
201112-22:46:34,955 nipype.interface INFO:
stderr 2020-11-12T22:46:34.955865:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:46:34,956 nipype.interface INFO:
stderr 2020-11-12T22:46:34.956200:++ Authored by: RW Cox
201112-22:46:34,958 nipype.interface INFO:
stderr 2020-11-12T22:46:34.958614:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-071_ses-1_task-matching_run-2_bold_calc.nii.gz
201112-22:46:34,959 nipype.interface INFO:
stderr 2020-11-12T22:46:34.959227: + deoblique
201112-22:46:34,959 nipype.interface INFO:
stderr 2020-11-12T22:46:34.959412: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-071_ses-1_task-matching_run-2_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-071_ses-1_task-matching_run-2_bold_calc.nii.gz in NIFTI storage)
201112-22:46:37,806 nipype.interface INFO:
stderr 2020-11-12T22:46:37.806432:++ 3drefit processed 1 datasets
201112-22:46:37,986 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:46:37,987 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_reorient".
201112-22:46:37,994 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-1_task-matching_run-2_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_reorient/sub-071_ses-1_task-matching_run-2_bold_calc.nii.gz
201112-22:46:41,418 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:46:41,419 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_RPI".
201112-22:46:41,425 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-2_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_RPI/sub-071_ses-1_task-matching_run-2_bold_calc_resample.nii.gz
201112-22:46:41,674 nipype.interface INFO:
stderr 2020-11-12T22:46:41.674518:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:46:41,674 nipype.interface INFO:
stderr 2020-11-12T22:46:41.674948:++ Authored by: KR Hammett & RW Cox
201112-22:46:42,39 nipype.interface INFO:
stderr 2020-11-12T22:46:42.039810:++ Output dataset ./sub-071_ses-1_task-matching_run-2_bold_calc_resample_tstat.nii.gz
201112-22:46:42,185 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:46:42,186 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_generate_ref".
201112-22:46:42,193 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-1_task-matching_run-2_bold_calc_resample.1D -1Dmatrix_save sub-071_ses-1_task-matching_run-2_bold_calc_resample.aff12.1D -prefix sub-071_ses-1_task-matching_run-2_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_RPI/sub-071_ses-1_task-matching_run-2_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-1_task-matching_run-2_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_generate_ref/sub-071_ses-1_task-matching_run-2_bold_calc_resample.nii.gz
201112-22:46:42,435 nipype.interface INFO:
stderr 2020-11-12T22:46:42.435291:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:46:42,435 nipype.interface INFO:
stderr 2020-11-12T22:46:42.435592:++ Authored by: RW Cox
201112-22:46:42,445 nipype.interface INFO:
stderr 2020-11-12T22:46:42.445020:++ Coarse del was 10, replaced with 3
201112-22:48:05,259 nipype.interface INFO:
stderr 2020-11-12T22:48:05.259283:++ Max displacement in automask = 2.45 (mm) at sub-brick 31
201112-22:48:05,259 nipype.interface INFO:
stderr 2020-11-12T22:48:05.259827:++ Max delta displ in automask = 2.77 (mm) at sub-brick 31
201112-22:48:08,116 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:48:08,118 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_motion".
201112-22:48:08,125 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-2_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_motion/sub-071_ses-1_task-matching_run-2_bold_calc_resample_volreg.nii.gz
201112-22:48:08,375 nipype.interface INFO:
stderr 2020-11-12T22:48:08.375422:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:48:08,375 nipype.interface INFO:
stderr 2020-11-12T22:48:08.375875:++ Authored by: KR Hammett & RW Cox
201112-22:48:08,745 nipype.interface INFO:
stderr 2020-11-12T22:48:08.745279:++ Output dataset ./sub-071_ses-1_task-matching_run-2_bold_calc_resample_volreg_tstat.nii.gz
201112-22:48:08,894 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:48:08,895 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_motion_correct_mcflirt".
201112-22:48:08,902 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_reorient/sub-071_ses-1_task-matching_run-2_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_motion_correct_mcflirt/sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_motion/sub-071_ses-1_task-matching_run-2_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:48:27,35 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:48:27,42 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/calculate_FDJ".
201112-22:48:27,48 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:48:27,278 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:48:27,279 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_frame_wise_displacement_jenkinson".
201112-22:48:27,286 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:48:27,517 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_jenkinson".
201112-22:48:27,519 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_max_displacement".
201112-22:48:27,527 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:48:27,755 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_max_displacement".
201112-22:48:27,757 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_coordinate_transformation".
201112-22:48:27,773 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:48:28,35 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_coordinate_transformation".
201112-22:48:28,44 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_mean_skull".
201112-22:48:28,52 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_mean_skull/sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf.nii.gz
201112-22:48:28,299 nipype.interface INFO:
stderr 2020-11-12T22:48:28.299482:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:48:28,299 nipype.interface INFO:
stderr 2020-11-12T22:48:28.299834:++ Authored by: KR Hammett & RW Cox
201112-22:48:28,689 nipype.interface INFO:
stderr 2020-11-12T22:48:28.689776:++ Output dataset ./sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat.nii.gz
201112-22:48:28,839 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:48:28,841 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass".
201112-22:48:28,847 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_mean_skull/sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:48:30,664 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:48:30,665 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_dilate".
201112-22:48:30,670 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_dilate/sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:48:31,326 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:48:31,327 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_mask".
201112-22:48:31,333 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_dilate/sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_mask/sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:48:31,740 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:48:31,742 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/unifize".
201112-22:48:31,748 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/unifize/sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:48:31,993 nipype.interface INFO:
stderr 2020-11-12T22:48:31.993075:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:49:49,107 nipype.interface INFO:
stderr 2020-11-12T22:49:49.107036: + Pre-processing: IAV..UW[s4080]Im
201112-22:49:49,123 nipype.interface INFO:
stderr 2020-11-12T22:49:49.123404:++ Output dataset ./uni.nii.gz
201112-22:49:49,123 nipype.interface INFO:
stderr 2020-11-12T22:49:49.123618:++ ===== Elapsed = 77.1 sec
201112-22:49:49,297 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:49:49,299 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass".
201112-22:49:49,304 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:49:49,553 nipype.interface INFO:
stderr 2020-11-12T22:49:49.553793:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:49:49,554 nipype.interface INFO:
stderr 2020-11-12T22:49:49.554387:++ Authored by: Emperor Zhark
201112-22:49:49,557 nipype.interface INFO:
stderr 2020-11-12T22:49:49.557310:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:49:49,562 nipype.interface INFO:
stderr 2020-11-12T22:49:49.562540:++ Forming automask
201112-22:49:49,564 nipype.interface INFO:
stderr 2020-11-12T22:49:49.564501: + Fixed clip level = 401.870667
201112-22:49:49,568 nipype.interface INFO:
stderr 2020-11-12T22:49:49.568790: + Used gradual clip level = 365.299316 .. 508.856354
201112-22:49:49,569 nipype.interface INFO:
stderr 2020-11-12T22:49:49.569053: + Number voxels above clip level = 32036
201112-22:49:49,569 nipype.interface INFO:
stderr 2020-11-12T22:49:49.569249: + Clustering voxels ...
201112-22:49:49,570 nipype.interface INFO:
stderr 2020-11-12T22:49:49.570855: + Largest cluster has 32029 voxels
201112-22:49:49,572 nipype.interface INFO:
stderr 2020-11-12T22:49:49.572259: + Clustering voxels ...
201112-22:49:49,573 nipype.interface INFO:
stderr 2020-11-12T22:49:49.573400: + Largest cluster has 31690 voxels
201112-22:49:49,576 nipype.interface INFO:
stderr 2020-11-12T22:49:49.576769: + Filled 765 voxels in small holes; now have 32455 voxels
201112-22:49:49,578 nipype.interface INFO:
stderr 2020-11-12T22:49:49.578975: + Clustering voxels ...
201112-22:49:49,580 nipype.interface INFO:
stderr 2020-11-12T22:49:49.580114: + Largest cluster has 32454 voxels
201112-22:49:49,580 nipype.interface INFO:
stderr 2020-11-12T22:49:49.580350: + Clustering non-brain voxels ...
201112-22:49:49,580 nipype.interface INFO:
stderr 2020-11-12T22:49:49.580511: + Clustering voxels ...
201112-22:49:49,583 nipype.interface INFO:
stderr 2020-11-12T22:49:49.583355: + Largest cluster has 106708 voxels
201112-22:49:49,583 nipype.interface INFO:
stderr 2020-11-12T22:49:49.583687: + Mask now has 32556 voxels
201112-22:49:49,583 nipype.interface INFO:
stderr 2020-11-12T22:49:49.583841:++ Dilating automask
201112-22:49:49,592 nipype.interface INFO:
stderr 2020-11-12T22:49:49.592173: + Clustering voxels ...
201112-22:49:49,594 nipype.interface INFO:
stderr 2020-11-12T22:49:49.594518: + Largest cluster has 100535 voxels
201112-22:49:49,594 nipype.interface INFO:
stderr 2020-11-12T22:49:49.594851:++ 38729 voxels in the mask [out of 139264: 27.81%]
201112-22:49:49,595 nipype.interface INFO:
stderr 2020-11-12T22:49:49.595026:++ first 11 x-planes are zero [from R]
201112-22:49:49,595 nipype.interface INFO:
stderr 2020-11-12T22:49:49.595197:++ last 9 x-planes are zero [from L]
201112-22:49:49,595 nipype.interface INFO:
stderr 2020-11-12T22:49:49.595336:++ first 2 y-planes are zero [from P]
201112-22:49:49,595 nipype.interface INFO:
stderr 2020-11-12T22:49:49.595480:++ last 5 y-planes are zero [from A]
201112-22:49:49,595 nipype.interface INFO:
stderr 2020-11-12T22:49:49.595616:++ first 0 z-planes are zero [from I]
201112-22:49:49,595 nipype.interface INFO:
stderr 2020-11-12T22:49:49.595749:++ last 0 z-planes are zero [from S]
201112-22:49:49,599 nipype.interface INFO:
stderr 2020-11-12T22:49:49.599599:++ Output dataset ./uni_mask.nii.gz
201112-22:49:49,599 nipype.interface INFO:
stderr 2020-11-12T22:49:49.599773:++ applying mask to original data
201112-22:49:49,600 nipype.interface INFO:
stderr 2020-11-12T22:49:49.600960:++ Writing masked data
201112-22:49:49,615 nipype.interface INFO:
stderr 2020-11-12T22:49:49.615874:++ Output dataset ./uni_masked.nii.gz
201112-22:49:49,616 nipype.interface INFO:
stderr 2020-11-12T22:49:49.616194:++ CPU time = 0.000000 sec
201112-22:49:49,766 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:49:49,768 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks".
201112-22:49:49,774 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:49:50,172 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:49:50,174 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/cal_DVARS".
201112-22:49:50,180 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-22:49:50,766 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-22:49:50,768 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_extract_brain".
201112-22:49:50,775 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_motion_correct_mcflirt/sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc.nii.gz
201112-22:49:51,21 nipype.interface INFO:
stderr 2020-11-12T22:49:51.021008:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:49:51,21 nipype.interface INFO:
stderr 2020-11-12T22:49:51.021573:++ Authored by: A cast of thousands
201112-22:49:53,154 nipype.interface INFO:
stderr 2020-11-12T22:49:53.154801:++ Output dataset ./sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc.nii.gz
201112-22:49:53,329 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:49:53,330 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize".
201112-22:49:53,336 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_extract_brain/sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize/sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-22:49:55,507 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:49:55,509 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mask_normalize".
201112-22:49:55,515 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize/sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mask_normalize/sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:49:56,376 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:49:56,378 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean".
201112-22:49:56,383 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean/sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc.nii.gz
201112-22:49:56,645 nipype.interface INFO:
stderr 2020-11-12T22:49:56.645431:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:49:56,645 nipype.interface INFO:
stderr 2020-11-12T22:49:56.645765:++ Authored by: KR Hammett & RW Cox
201112-22:49:56,880 nipype.interface INFO:
stderr 2020-11-12T22:49:56.880451:++ Output dataset ./sub-071_ses-1_task-matching_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-22:49:57,32 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:49:57,34 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/norm_motion_params".
201112-22:49:57,39 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:49:57,272 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:49:57,273 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_motion_0/_scan_matching_run-2/motion_plot".
201112-22:49:57,278 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-22:49:57,713 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_motion_0.motion_plot".
201112-22:49:57,714 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_qc___movement_trans_plot".
201112-22:49:57,721 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:49:57,933 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___movement_trans_plot/_scan_matching_run-2/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/movement_trans_plot/_scan_matching_run-2/motion_trans_plot.png
201112-22:49:57,950 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_trans_plot".
201112-22:49:57,952 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_qc___movement_rot_plot".
201112-22:49:57,958 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:49:58,172 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___movement_rot_plot/_scan_matching_run-2/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/movement_rot_plot/_scan_matching_run-2/motion_rot_plot.png
201112-22:49:58,188 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_rot_plot".
201112-22:49:58,190 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/calc_motion_parameters".
201112-22:49:58,196 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:49:58,425 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-22:49:58,426 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_motion_params".
201112-22:49:58,433 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:49:58,663 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_motion_params".
201112-22:49:58,665 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/calculate_FD".
201112-22:49:58,669 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-22:49:58,901 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-22:49:58,903 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_frame_wise_displacement_power".
201112-22:49:58,910 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:49:59,141 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_power".
201112-22:49:59,143 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/calc_power_parameters".
201112-22:49:59,148 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:49:59,383 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-22:49:59,385 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_power_params".
201112-22:49:59,392 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:49:59,624 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_power_params".
201112-22:49:59,626 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_movement_parameters".
201112-22:49:59,633 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:49:59,864 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_movement_parameters".
201112-22:49:59,866 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/func_despiked_0".
201112-22:49:59,871 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-071_ses-1_task-matching_run-2_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/func_despiked_0/sub-071_ses-1_task-matching_run-2_bold_calc.nii.gz
201112-22:50:00,119 nipype.interface INFO:
stderr 2020-11-12T22:50:00.119824:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:50:00,120 nipype.interface INFO:
stderr 2020-11-12T22:50:00.120188:++ Authored by: RW Cox
201112-22:50:00,122 nipype.interface INFO:
stderr 2020-11-12T22:50:00.122396:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:50:00,122 nipype.interface INFO:
stderr 2020-11-12T22:50:00.122396: such as /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/func_despiked_0/sub-071_ses-1_task-matching_run-2_bold_calc.nii.gz,
201112-22:50:00,122 nipype.interface INFO:
stderr 2020-11-12T22:50:00.122396: or viewing/combining it with volumes of differing obliquity,
201112-22:50:00,122 nipype.interface INFO:
stderr 2020-11-12T22:50:00.122396: you should consider running:
201112-22:50:00,122 nipype.interface INFO:
stderr 2020-11-12T22:50:00.122396: 3dWarp -deoblique
201112-22:50:00,122 nipype.interface INFO:
stderr 2020-11-12T22:50:00.122396: on this and other oblique datasets in the same session.
201112-22:50:00,123 nipype.interface INFO:
stderr 2020-11-12T22:50:00.122396: See 3dWarp -help for details.
201112-22:50:00,123 nipype.interface INFO:
stderr 2020-11-12T22:50:00.123236:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/func_despiked_0/sub-071_ses-1_task-matching_run-2_bold_calc.nii.gz is 25.736012 degrees from plumb.
201112-22:50:00,123 nipype.interface INFO:
stderr 2020-11-12T22:50:00.123423:++ Input dataset is in short format, but output will be in float format
201112-22:50:00,123 nipype.interface INFO:
stderr 2020-11-12T22:50:00.123593:++ ignoring first 0 time points, using last 99
201112-22:50:00,123 nipype.interface INFO:
stderr 2020-11-12T22:50:00.123761:++ using 99 time points => -corder 3
201112-22:50:00,123 nipype.interface INFO:
stderr 2020-11-12T22:50:00.123925:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/func_despiked_0/sub-071_ses-1_task-matching_run-2_bold_calc.nii.gz
201112-22:50:00,487 nipype.interface INFO:
stderr 2020-11-12T22:50:00.487243:++ 35854 voxels in the automask [out of 139264 in dataset]
201112-22:50:00,492 nipype.interface INFO:
stderr 2020-11-12T22:50:00.492671:++ 60293 voxels in the dilated automask [out of 139264 in dataset]
201112-22:50:00,501 nipype.interface INFO:
stderr 2020-11-12T22:50:00.501814:++ Procesing time series with OLD model fit algorithm
201112-22:50:00,502 nipype.interface INFO:
stderr 2020-11-12T22:50:00.501994:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-22:50:00,502 nipype.interface INFO:
stderr 2020-11-12T22:50:00.502181: + [ 3.457% .. 0.072% of normal distribution]
201112-22:50:00,502 nipype.interface INFO:
stderr 2020-11-12T22:50:00.502337: + [ 8.839% .. 3.125% of Laplace distribution]
201112-22:50:00,502 nipype.interface INFO:
stderr 2020-11-12T22:50:00.502509:++ start OpenMP thread #0
201112-22:50:04,192 nipype.interface INFO:
stderr 2020-11-12T22:50:04.192874:...........................
201112-22:50:04,193 nipype.interface INFO:
stderr 2020-11-12T22:50:04.193356:++ Elapsed despike time = 3s 691ms
201112-22:50:04,193 nipype.interface INFO:
stderr 2020-11-12T22:50:04.193504:
201112-22:50:04,194 nipype.interface INFO:
stderr 2020-11-12T22:50:04.194182:++ FINAL: 5969007 data points, 530983 edits [8.896%], 170475 big edits [2.856%]
201112-22:50:07,389 nipype.interface INFO:
stderr 2020-11-12T22:50:07.389462:++ Output dataset ./sub-071_ses-1_task-matching_run-2_bold_calc_despike.nii.gz
201112-22:50:07,571 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_despiked_0".
201112-22:50:07,573 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_matching_run-2/slice_timing".
201112-22:50:07,582 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:50:07,583 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_matching_run-2/slice_timing/sub-071_ses-1_task-matching_run-2_bold_calc_despike.nii.gz
201112-22:50:07,794 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:50:07,825 nipype.interface INFO:
stderr 2020-11-12T22:50:07.825559:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:50:07,827 nipype.interface INFO:
stderr 2020-11-12T22:50:07.827868:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:50:07,828 nipype.interface INFO:
stderr 2020-11-12T22:50:07.827868: such as /outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_matching_run-2/slice_timing/sub-071_ses-1_task-matching_run-2_bold_calc_despike.nii.gz,
201112-22:50:07,828 nipype.interface INFO:
stderr 2020-11-12T22:50:07.827868: or viewing/combining it with volumes of differing obliquity,
201112-22:50:07,828 nipype.interface INFO:
stderr 2020-11-12T22:50:07.827868: you should consider running:
201112-22:50:07,828 nipype.interface INFO:
stderr 2020-11-12T22:50:07.827868: 3dWarp -deoblique
201112-22:50:07,828 nipype.interface INFO:
stderr 2020-11-12T22:50:07.827868: on this and other oblique datasets in the same session.
201112-22:50:07,828 nipype.interface INFO:
stderr 2020-11-12T22:50:07.827868: See 3dWarp -help for details.
201112-22:50:07,828 nipype.interface INFO:
stderr 2020-11-12T22:50:07.828595:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_matching_run-2/slice_timing/sub-071_ses-1_task-matching_run-2_bold_calc_despike.nii.gz is 25.736012 degrees from plumb.
201112-22:50:11,515 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_slice_timing_correction_0.slice_timing".
201112-22:50:11,517 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique".
201112-22:50:11,561 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift.nii.gz
201112-22:50:11,808 nipype.interface INFO:
stderr 2020-11-12T22:50:11.808065:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:50:11,808 nipype.interface INFO:
stderr 2020-11-12T22:50:11.808406:++ Authored by: RW Cox
201112-22:50:11,810 nipype.interface INFO:
stderr 2020-11-12T22:50:11.810577:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift.nii.gz
201112-22:50:11,811 nipype.interface INFO:
stderr 2020-11-12T22:50:11.811227: + deoblique
201112-22:50:11,811 nipype.interface INFO:
stderr 2020-11-12T22:50:11.811424: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_deoblique/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-22:50:13,481 nipype.interface INFO:
stderr 2020-11-12T22:50:13.481841:++ 3drefit processed 1 datasets
201112-22:50:13,663 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:50:13,665 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_reorient".
201112-22:50:13,672 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_reorient/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift.nii.gz
201112-22:50:15,926 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:50:15,928 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_RPI".
201112-22:50:15,934 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_RPI/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample.nii.gz
201112-22:50:16,173 nipype.interface INFO:
stderr 2020-11-12T22:50:16.173603:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:50:16,173 nipype.interface INFO:
stderr 2020-11-12T22:50:16.173897:++ Authored by: KR Hammett & RW Cox
201112-22:50:16,636 nipype.interface INFO:
stderr 2020-11-12T22:50:16.636655:++ Output dataset ./sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-22:50:16,787 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:50:16,788 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_generate_ref".
201112-22:50:16,794 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_RPI/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_generate_ref/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample.nii.gz
201112-22:50:17,35 nipype.interface INFO:
stderr 2020-11-12T22:50:17.035647:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:50:17,35 nipype.interface INFO:
stderr 2020-11-12T22:50:17.035956:++ Authored by: RW Cox
201112-22:50:17,43 nipype.interface INFO:
stderr 2020-11-12T22:50:17.043333:++ Coarse del was 10, replaced with 3
201112-22:51:38,230 nipype.interface INFO:
stderr 2020-11-12T22:51:38.230626:++ Max displacement in automask = 0.98 (mm) at sub-brick 33
201112-22:51:38,231 nipype.interface INFO:
stderr 2020-11-12T22:51:38.231494:++ Max delta displ in automask = 1.04 (mm) at sub-brick 31
201112-22:51:41,922 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:51:41,924 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_motion".
201112-22:51:41,929 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_motion/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-22:51:42,195 nipype.interface INFO:
stderr 2020-11-12T22:51:42.195395:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:51:42,195 nipype.interface INFO:
stderr 2020-11-12T22:51:42.195722:++ Authored by: KR Hammett & RW Cox
201112-22:51:42,802 nipype.interface INFO:
stderr 2020-11-12T22:51:42.802499:++ Output dataset ./sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-22:51:42,954 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:51:42,956 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_motion_correct_mcflirt".
201112-22:51:42,961 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_reorient/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_motion_correct_mcflirt/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_get_mean_motion/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:51:58,755 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:51:58,762 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_motion_correct".
201112-22:51:58,769 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:51:58,998 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_motion_correct".
201112-22:51:59,0 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_mean_skull".
201112-22:51:59,7 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_mean_skull/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-22:51:59,246 nipype.interface INFO:
stderr 2020-11-12T22:51:59.246410:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:51:59,246 nipype.interface INFO:
stderr 2020-11-12T22:51:59.246713:++ Authored by: KR Hammett & RW Cox
201112-22:51:59,735 nipype.interface INFO:
stderr 2020-11-12T22:51:59.735373:++ Output dataset ./sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-22:51:59,888 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:51:59,889 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass".
201112-22:51:59,895 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_mean_skull/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:52:01,734 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:52:01,736 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_dilate".
201112-22:52:01,742 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_dilate/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:52:02,405 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:52:02,407 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_mask".
201112-22:52:02,412 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_dilate/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_mask/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:52:02,824 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:52:02,825 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/unifize".
201112-22:52:02,831 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/unifize/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:52:03,81 nipype.interface INFO:
stderr 2020-11-12T22:52:03.081888:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:53:20,113 nipype.interface INFO:
stderr 2020-11-12T22:53:20.113265: + Pre-processing: IAV..UW[s4052]Im
201112-22:53:20,128 nipype.interface INFO:
stderr 2020-11-12T22:53:20.128928:++ Output dataset ./uni.nii.gz
201112-22:53:20,129 nipype.interface INFO:
stderr 2020-11-12T22:53:20.129216:++ ===== Elapsed = 77.0 sec
201112-22:53:20,303 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:53:20,304 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass".
201112-22:53:20,310 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:53:20,559 nipype.interface INFO:
stderr 2020-11-12T22:53:20.559090:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:53:20,559 nipype.interface INFO:
stderr 2020-11-12T22:53:20.559410:++ Authored by: Emperor Zhark
201112-22:53:20,562 nipype.interface INFO:
stderr 2020-11-12T22:53:20.562090:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:53:20,568 nipype.interface INFO:
stderr 2020-11-12T22:53:20.568553:++ Forming automask
201112-22:53:20,570 nipype.interface INFO:
stderr 2020-11-12T22:53:20.570976: + Fixed clip level = 401.255402
201112-22:53:20,574 nipype.interface INFO:
stderr 2020-11-12T22:53:20.574294: + Used gradual clip level = 364.715607 .. 507.578278
201112-22:53:20,574 nipype.interface INFO:
stderr 2020-11-12T22:53:20.574496: + Number voxels above clip level = 32046
201112-22:53:20,574 nipype.interface INFO:
stderr 2020-11-12T22:53:20.574648: + Clustering voxels ...
201112-22:53:20,576 nipype.interface INFO:
stderr 2020-11-12T22:53:20.576020: + Largest cluster has 32039 voxels
201112-22:53:20,577 nipype.interface INFO:
stderr 2020-11-12T22:53:20.577408: + Clustering voxels ...
201112-22:53:20,578 nipype.interface INFO:
stderr 2020-11-12T22:53:20.578550: + Largest cluster has 31693 voxels
201112-22:53:20,581 nipype.interface INFO:
stderr 2020-11-12T22:53:20.581916: + Filled 769 voxels in small holes; now have 32462 voxels
201112-22:53:20,584 nipype.interface INFO:
stderr 2020-11-12T22:53:20.584139: + Clustering voxels ...
201112-22:53:20,585 nipype.interface INFO:
stderr 2020-11-12T22:53:20.585249: + Largest cluster has 32461 voxels
201112-22:53:20,585 nipype.interface INFO:
stderr 2020-11-12T22:53:20.585477: + Clustering non-brain voxels ...
201112-22:53:20,585 nipype.interface INFO:
stderr 2020-11-12T22:53:20.585619: + Clustering voxels ...
201112-22:53:20,588 nipype.interface INFO:
stderr 2020-11-12T22:53:20.588405: + Largest cluster has 106701 voxels
201112-22:53:20,588 nipype.interface INFO:
stderr 2020-11-12T22:53:20.588729: + Mask now has 32563 voxels
201112-22:53:20,588 nipype.interface INFO:
stderr 2020-11-12T22:53:20.588876:++ Dilating automask
201112-22:53:20,596 nipype.interface INFO:
stderr 2020-11-12T22:53:20.596639: + Clustering voxels ...
201112-22:53:20,599 nipype.interface INFO:
stderr 2020-11-12T22:53:20.598987: + Largest cluster has 100508 voxels
201112-22:53:20,599 nipype.interface INFO:
stderr 2020-11-12T22:53:20.599324:++ 38756 voxels in the mask [out of 139264: 27.83%]
201112-22:53:20,599 nipype.interface INFO:
stderr 2020-11-12T22:53:20.599493:++ first 11 x-planes are zero [from R]
201112-22:53:20,599 nipype.interface INFO:
stderr 2020-11-12T22:53:20.599651:++ last 9 x-planes are zero [from L]
201112-22:53:20,599 nipype.interface INFO:
stderr 2020-11-12T22:53:20.599786:++ first 2 y-planes are zero [from P]
201112-22:53:20,599 nipype.interface INFO:
stderr 2020-11-12T22:53:20.599925:++ last 5 y-planes are zero [from A]
201112-22:53:20,600 nipype.interface INFO:
stderr 2020-11-12T22:53:20.600086:++ first 0 z-planes are zero [from I]
201112-22:53:20,600 nipype.interface INFO:
stderr 2020-11-12T22:53:20.600242:++ last 0 z-planes are zero [from S]
201112-22:53:20,604 nipype.interface INFO:
stderr 2020-11-12T22:53:20.604818:++ Output dataset ./uni_mask.nii.gz
201112-22:53:20,605 nipype.interface INFO:
stderr 2020-11-12T22:53:20.604991:++ applying mask to original data
201112-22:53:20,605 nipype.interface INFO:
stderr 2020-11-12T22:53:20.605669:++ Writing masked data
201112-22:53:20,619 nipype.interface INFO:
stderr 2020-11-12T22:53:20.619345:++ Output dataset ./uni_masked.nii.gz
201112-22:53:20,619 nipype.interface INFO:
stderr 2020-11-12T22:53:20.619669:++ CPU time = 0.000000 sec
201112-22:53:20,771 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:53:20,773 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks".
201112-22:53:20,779 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_first_pass/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:53:21,178 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:53:21,179 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-22:53:21,185 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-22:53:21,412 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-22:53:21,414 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-22:53:21,419 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:53:21,671 nipype.interface INFO:
stderr 2020-11-12T22:53:21.671639:++ no -frac option: defaulting to -union
201112-22:53:21,672 nipype.interface INFO:
stderr 2020-11-12T22:53:21.671989:++ processing 1 input dataset(s), NN=2...
201112-22:53:21,672 nipype.interface INFO:
stderr 2020-11-12T22:53:21.672451:++ padding all datasets by 0 (for dilations)
201112-22:53:21,679 nipype.interface INFO:
stderr 2020-11-12T22:53:21.679591:++ frac 0 over 1 volumes gives min count 0
201112-22:53:21,680 nipype.interface INFO:
stderr 2020-11-12T22:53:21.680461:++ voxel limits: 0 clipped, 38687 survived, 100577 were zero
201112-22:53:21,680 nipype.interface INFO:
stderr 2020-11-12T22:53:21.680690:++ writing result sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-22:53:21,685 nipype.interface INFO:
stderr 2020-11-12T22:53:21.685274:++ Output dataset ./sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-22:53:21,838 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-22:53:21,840 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_functional_brain_mask".
201112-22:53:21,848 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:53:22,79 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask".
201112-22:53:22,81 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/functional_brain_mask_derivative_0".
201112-22:53:22,86 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-22:53:22,295 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-22:53:22,300 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:53:22,773 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201112-22:53:22,788 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.functional_brain_mask_derivative_0".
201112-22:53:22,789 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_extract_brain".
201112-22:53:22,798 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_motion_correct_mcflirt/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:53:23,42 nipype.interface INFO:
stderr 2020-11-12T22:53:23.042419:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:53:23,42 nipype.interface INFO:
stderr 2020-11-12T22:53:23.042733:++ Authored by: A cast of thousands
201112-22:53:25,426 nipype.interface INFO:
stderr 2020-11-12T22:53:25.426834:++ Output dataset ./sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:53:25,605 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:53:25,606 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize".
201112-22:53:25,611 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/func_extract_brain/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-22:53:27,457 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:53:27,459 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-22:53:27,464 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:53:28,225 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_mean".
201112-22:53:28,226 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-22:53:28,233 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:53:28,474 nipype.interface INFO:
stderr 2020-11-12T22:53:28.474831:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:53:28,475 nipype.interface INFO:
stderr 2020-11-12T22:53:28.475138:++ Authored by: KR Hammett & RW Cox
201112-22:53:28,913 nipype.interface INFO:
stderr 2020-11-12T22:53:28.913706:++ Output dataset ./sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:53:29,65 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.functional_mean".
201112-22:53:29,66 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-2/std_dev".
201112-22:53:29,72 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-2/std_dev/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:53:29,313 nipype.interface INFO:
stderr 2020-11-12T22:53:29.313134:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:53:29,313 nipype.interface INFO:
stderr 2020-11-12T22:53:29.313436:++ Authored by: KR Hammett & RW Cox
201112-22:53:29,716 nipype.interface INFO:
stderr 2020-11-12T22:53:29.716917:++ Output dataset ./sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:53:29,872 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev".
201112-22:53:29,873 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_functional_preprocessed".
201112-22:53:29,880 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:53:30,109 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed".
201112-22:53:30,111 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mask_normalize".
201112-22:53:30,117 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mask_normalize/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:53:31,4 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:53:31,6 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_functional_preprocessed_mask".
201112-22:53:31,12 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:53:31,240 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed_mask".
201112-22:53:31,242 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean".
201112-22:53:31,247 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:53:31,492 nipype.interface INFO:
stderr 2020-11-12T22:53:31.492527:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:53:31,492 nipype.interface INFO:
stderr 2020-11-12T22:53:31.492868:++ Authored by: KR Hammett & RW Cox
201112-22:53:31,916 nipype.interface INFO:
stderr 2020-11-12T22:53:31.916926:++ Output dataset ./sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-22:53:32,73 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:53:32,74 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_mean_functional".
201112-22:53:32,82 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:53:32,310 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_mean_functional".
201112-22:53:32,311 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/norm_motion_params".
201112-22:53:32,317 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:53:32,550 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:53:32,552 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_slice_time_corrected".
201112-22:53:32,560 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:53:32,790 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_slice_time_corrected".
201112-22:53:32,792 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_raw_functional".
201112-22:53:32,801 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:53:33,117 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_raw_functional".
201112-22:53:33,118 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_matching_run-2/check_func_scan".
201112-22:53:33,150 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:53:33,383 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.check_func_scan".
201112-22:53:33,392 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_matching_run-1/select_scan_params".
201112-22:53:33,416 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:53:33,646 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.select_scan_params".
201112-22:53:33,655 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_matching_run-1/s3_scan_params".
201112-22:53:33,663 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:53:33,895 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.s3_scan_params".
201112-22:53:33,898 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.scan_params_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/scan_params_0".
201112-22:53:33,908 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:53:34,142 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.scan_params_0".
201112-22:53:34,144 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_matching_run-1/selectrest".
201112-22:53:34,172 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:53:34,407 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.selectrest".
201112-22:53:34,417 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_matching_run-1/check_for_s3".
201112-22:53:34,422 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:53:34,729 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.check_for_s3".
201112-22:53:34,730 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-071_ses-1/edit_func_0/_scan_matching_run-1/func_get_idx".
201112-22:53:34,737 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:53:34,965 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.edit_func_0.func_get_idx".
201112-22:53:34,967 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-071_ses-1/edit_func_0/_scan_matching_run-1/func_drop_trs".
201112-22:53:34,974 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-071/ses-1/func/sub-071_ses-1_task-matching_run-1_bold.nii.gz[0..98] -expr "a" -prefix sub-071_ses-1_task-matching_run-1_bold_calc.nii.gz
201112-22:53:35,223 nipype.interface INFO:
stderr 2020-11-12T22:53:35.223513:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:53:35,223 nipype.interface INFO:
stderr 2020-11-12T22:53:35.223868:++ Authored by: A cast of thousands
201112-22:53:39,566 nipype.interface INFO:
stderr 2020-11-12T22:53:39.566305:++ Output dataset ./sub-071_ses-1_task-matching_run-1_bold_calc.nii.gz
201112-22:53:39,746 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.edit_func_0.func_drop_trs".
201112-22:53:39,747 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique".
201112-22:53:39,781 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-071_ses-1_task-matching_run-1_bold_calc.nii.gz
201112-22:53:40,27 nipype.interface INFO:
stderr 2020-11-12T22:53:40.027662:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:53:40,28 nipype.interface INFO:
stderr 2020-11-12T22:53:40.027999:++ Authored by: RW Cox
201112-22:53:40,30 nipype.interface INFO:
stderr 2020-11-12T22:53:40.030388:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-071_ses-1_task-matching_run-1_bold_calc.nii.gz
201112-22:53:40,31 nipype.interface INFO:
stderr 2020-11-12T22:53:40.031023: + deoblique
201112-22:53:40,31 nipype.interface INFO:
stderr 2020-11-12T22:53:40.031220: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-071_ses-1_task-matching_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-071_ses-1_task-matching_run-1_bold_calc.nii.gz in NIFTI storage)
201112-22:53:42,883 nipype.interface INFO:
stderr 2020-11-12T22:53:42.883774:++ 3drefit processed 1 datasets
201112-22:53:43,64 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:53:43,66 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_reorient".
201112-22:53:43,73 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-1_task-matching_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_reorient/sub-071_ses-1_task-matching_run-1_bold_calc.nii.gz
201112-22:53:46,485 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:53:46,486 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_RPI".
201112-22:53:46,491 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_RPI/sub-071_ses-1_task-matching_run-1_bold_calc_resample.nii.gz
201112-22:53:46,739 nipype.interface INFO:
stderr 2020-11-12T22:53:46.739575:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:53:46,739 nipype.interface INFO:
stderr 2020-11-12T22:53:46.739918:++ Authored by: KR Hammett & RW Cox
201112-22:53:47,102 nipype.interface INFO:
stderr 2020-11-12T22:53:47.102552:++ Output dataset ./sub-071_ses-1_task-matching_run-1_bold_calc_resample_tstat.nii.gz
201112-22:53:47,251 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:53:47,253 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_generate_ref".
201112-22:53:47,259 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-1_task-matching_run-1_bold_calc_resample.1D -1Dmatrix_save sub-071_ses-1_task-matching_run-1_bold_calc_resample.aff12.1D -prefix sub-071_ses-1_task-matching_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_RPI/sub-071_ses-1_task-matching_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-1_task-matching_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_generate_ref/sub-071_ses-1_task-matching_run-1_bold_calc_resample.nii.gz
201112-22:53:47,504 nipype.interface INFO:
stderr 2020-11-12T22:53:47.504756:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:53:47,505 nipype.interface INFO:
stderr 2020-11-12T22:53:47.505075:++ Authored by: RW Cox
201112-22:53:47,514 nipype.interface INFO:
stderr 2020-11-12T22:53:47.514748:++ Coarse del was 10, replaced with 3
201112-22:55:09,932 nipype.interface INFO:
stderr 2020-11-12T22:55:09.932561:++ Max displacement in automask = 2.31 (mm) at sub-brick 68
201112-22:55:09,933 nipype.interface INFO:
stderr 2020-11-12T22:55:09.933221:++ Max delta displ in automask = 1.98 (mm) at sub-brick 68
201112-22:55:12,786 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:55:12,787 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_motion".
201112-22:55:12,794 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_motion/sub-071_ses-1_task-matching_run-1_bold_calc_resample_volreg.nii.gz
201112-22:55:13,48 nipype.interface INFO:
stderr 2020-11-12T22:55:13.048351:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:55:13,48 nipype.interface INFO:
stderr 2020-11-12T22:55:13.048676:++ Authored by: KR Hammett & RW Cox
201112-22:55:13,418 nipype.interface INFO:
stderr 2020-11-12T22:55:13.418598:++ Output dataset ./sub-071_ses-1_task-matching_run-1_bold_calc_resample_volreg_tstat.nii.gz
201112-22:55:13,569 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:55:13,570 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_motion_correct_mcflirt".
201112-22:55:13,577 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_reorient/sub-071_ses-1_task-matching_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_motion_correct_mcflirt/sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_motion/sub-071_ses-1_task-matching_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:55:31,988 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:55:31,995 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/calculate_FDJ".
201112-22:55:32,0 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:55:32,229 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:55:32,230 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_frame_wise_displacement_jenkinson".
201112-22:55:32,238 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:55:32,468 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_jenkinson".
201112-22:55:32,469 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_max_displacement".
201112-22:55:32,478 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:55:32,708 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_max_displacement".
201112-22:55:32,709 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_coordinate_transformation".
201112-22:55:32,727 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:55:32,984 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_coordinate_transformation".
201112-22:55:32,993 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_mean_skull".
201112-22:55:33,0 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_mean_skull/sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf.nii.gz
201112-22:55:33,254 nipype.interface INFO:
stderr 2020-11-12T22:55:33.253871:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:55:33,254 nipype.interface INFO:
stderr 2020-11-12T22:55:33.254690:++ Authored by: KR Hammett & RW Cox
201112-22:55:33,649 nipype.interface INFO:
stderr 2020-11-12T22:55:33.649843:++ Output dataset ./sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat.nii.gz
201112-22:55:33,798 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:55:33,799 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass".
201112-22:55:33,805 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_mean_skull/sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:55:35,609 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:55:35,611 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_dilate".
201112-22:55:35,617 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_dilate/sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:55:36,285 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:55:36,286 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_mask".
201112-22:55:36,292 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_dilate/sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_mask/sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:55:36,700 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:55:36,702 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/unifize".
201112-22:55:36,709 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/unifize/sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:55:36,961 nipype.interface INFO:
stderr 2020-11-12T22:55:36.961451:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:56:54,45 nipype.interface INFO:
stderr 2020-11-12T22:56:54.045207: + Pre-processing: IAV..UW[s3958]Im
201112-22:56:54,61 nipype.interface INFO:
stderr 2020-11-12T22:56:54.061055:++ Output dataset ./uni.nii.gz
201112-22:56:54,61 nipype.interface INFO:
stderr 2020-11-12T22:56:54.061269:++ ===== Elapsed = 77.1 sec
201112-22:56:54,234 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:56:54,236 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass".
201112-22:56:54,243 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:56:54,491 nipype.interface INFO:
stderr 2020-11-12T22:56:54.491923:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:56:54,492 nipype.interface INFO:
stderr 2020-11-12T22:56:54.492487:++ Authored by: Emperor Zhark
201112-22:56:54,495 nipype.interface INFO:
stderr 2020-11-12T22:56:54.495260:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:56:54,501 nipype.interface INFO:
stderr 2020-11-12T22:56:54.501109:++ Forming automask
201112-22:56:54,502 nipype.interface INFO:
stderr 2020-11-12T22:56:54.502848: + Fixed clip level = 399.715668
201112-22:56:54,507 nipype.interface INFO:
stderr 2020-11-12T22:56:54.507132: + Used gradual clip level = 363.667267 .. 503.328796
201112-22:56:54,507 nipype.interface INFO:
stderr 2020-11-12T22:56:54.507380: + Number voxels above clip level = 32029
201112-22:56:54,507 nipype.interface INFO:
stderr 2020-11-12T22:56:54.507563: + Clustering voxels ...
201112-22:56:54,509 nipype.interface INFO:
stderr 2020-11-12T22:56:54.509232: + Largest cluster has 32027 voxels
201112-22:56:54,511 nipype.interface INFO:
stderr 2020-11-12T22:56:54.511076: + Clustering voxels ...
201112-22:56:54,512 nipype.interface INFO:
stderr 2020-11-12T22:56:54.512222: + Largest cluster has 31641 voxels
201112-22:56:54,515 nipype.interface INFO:
stderr 2020-11-12T22:56:54.515596: + Filled 836 voxels in small holes; now have 32477 voxels
201112-22:56:54,517 nipype.interface INFO:
stderr 2020-11-12T22:56:54.517797: + Filled 1 voxels in large holes; now have 32478 voxels
201112-22:56:54,519 nipype.interface INFO:
stderr 2020-11-12T22:56:54.519065: + Clustering voxels ...
201112-22:56:54,520 nipype.interface INFO:
stderr 2020-11-12T22:56:54.520218: + Largest cluster has 32477 voxels
201112-22:56:54,520 nipype.interface INFO:
stderr 2020-11-12T22:56:54.520461: + Clustering non-brain voxels ...
201112-22:56:54,520 nipype.interface INFO:
stderr 2020-11-12T22:56:54.520601: + Clustering voxels ...
201112-22:56:54,523 nipype.interface INFO:
stderr 2020-11-12T22:56:54.523415: + Largest cluster has 106696 voxels
201112-22:56:54,523 nipype.interface INFO:
stderr 2020-11-12T22:56:54.523739: + Mask now has 32568 voxels
201112-22:56:54,523 nipype.interface INFO:
stderr 2020-11-12T22:56:54.523886:++ Dilating automask
201112-22:56:54,532 nipype.interface INFO:
stderr 2020-11-12T22:56:54.532318: + Clustering voxels ...
201112-22:56:54,534 nipype.interface INFO:
stderr 2020-11-12T22:56:54.534662: + Largest cluster has 100547 voxels
201112-22:56:54,535 nipype.interface INFO:
stderr 2020-11-12T22:56:54.534991:++ 38717 voxels in the mask [out of 139264: 27.80%]
201112-22:56:54,535 nipype.interface INFO:
stderr 2020-11-12T22:56:54.535168:++ first 11 x-planes are zero [from R]
201112-22:56:54,535 nipype.interface INFO:
stderr 2020-11-12T22:56:54.535329:++ last 9 x-planes are zero [from L]
201112-22:56:54,535 nipype.interface INFO:
stderr 2020-11-12T22:56:54.535464:++ first 1 y-planes are zero [from P]
201112-22:56:54,535 nipype.interface INFO:
stderr 2020-11-12T22:56:54.535603:++ last 5 y-planes are zero [from A]
201112-22:56:54,535 nipype.interface INFO:
stderr 2020-11-12T22:56:54.535732:++ first 0 z-planes are zero [from I]
201112-22:56:54,535 nipype.interface INFO:
stderr 2020-11-12T22:56:54.535861:++ last 0 z-planes are zero [from S]
201112-22:56:54,539 nipype.interface INFO:
stderr 2020-11-12T22:56:54.539563:++ Output dataset ./uni_mask.nii.gz
201112-22:56:54,539 nipype.interface INFO:
stderr 2020-11-12T22:56:54.539731:++ applying mask to original data
201112-22:56:54,540 nipype.interface INFO:
stderr 2020-11-12T22:56:54.540685:++ Writing masked data
201112-22:56:54,555 nipype.interface INFO:
stderr 2020-11-12T22:56:54.555426:++ Output dataset ./uni_masked.nii.gz
201112-22:56:54,555 nipype.interface INFO:
stderr 2020-11-12T22:56:54.555733:++ CPU time = 0.000000 sec
201112-22:56:54,706 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:56:54,708 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks".
201112-22:56:54,714 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:56:55,109 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:56:55,111 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/cal_DVARS".
201112-22:56:55,118 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-22:56:55,701 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-22:56:55,703 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_extract_brain".
201112-22:56:55,710 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_motion_correct_mcflirt/sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:56:55,956 nipype.interface INFO:
stderr 2020-11-12T22:56:55.956595:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:56:55,956 nipype.interface INFO:
stderr 2020-11-12T22:56:55.956923:++ Authored by: A cast of thousands
201112-22:56:58,96 nipype.interface INFO:
stderr 2020-11-12T22:56:58.096193:++ Output dataset ./sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:56:58,268 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:56:58,270 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize".
201112-22:56:58,276 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_extract_brain/sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize/sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-22:57:00,113 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:57:00,115 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mask_normalize".
201112-22:57:00,121 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize/sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mask_normalize/sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:57:00,982 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:57:00,984 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean".
201112-22:57:00,989 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean/sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:57:01,234 nipype.interface INFO:
stderr 2020-11-12T22:57:01.234581:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:57:01,234 nipype.interface INFO:
stderr 2020-11-12T22:57:01.234899:++ Authored by: KR Hammett & RW Cox
201112-22:57:01,469 nipype.interface INFO:
stderr 2020-11-12T22:57:01.469309:++ Output dataset ./sub-071_ses-1_task-matching_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-22:57:01,618 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:57:01,620 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/norm_motion_params".
201112-22:57:01,627 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:57:01,853 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:57:01,854 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_motion_0/_scan_matching_run-1/motion_plot".
201112-22:57:01,858 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-22:57:02,295 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_motion_0.motion_plot".
201112-22:57:02,296 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_qc___movement_trans_plot".
201112-22:57:02,302 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:57:02,513 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___movement_trans_plot/_scan_matching_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/movement_trans_plot/_scan_matching_run-1/motion_trans_plot.png
201112-22:57:02,530 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_trans_plot".
201112-22:57:02,532 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_qc___movement_rot_plot".
201112-22:57:02,538 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:57:02,751 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___movement_rot_plot/_scan_matching_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/movement_rot_plot/_scan_matching_run-1/motion_rot_plot.png
201112-22:57:02,767 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___movement_rot_plot".
201112-22:57:02,769 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/calc_motion_parameters".
201112-22:57:02,775 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:57:03,8 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-22:57:03,10 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_motion_params".
201112-22:57:03,17 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:57:03,249 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_motion_params".
201112-22:57:03,251 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/calculate_FD".
201112-22:57:03,256 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-22:57:03,485 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-22:57:03,486 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_frame_wise_displacement_power".
201112-22:57:03,493 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:57:03,721 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_frame_wise_displacement_power".
201112-22:57:03,723 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-1/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/calc_power_parameters".
201112-22:57:03,729 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:57:03,962 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-22:57:03,963 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_power_params".
201112-22:57:03,971 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:57:04,204 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_power_params".
201112-22:57:04,205 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_movement_parameters".
201112-22:57:04,213 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:57:04,442 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_movement_parameters".
201112-22:57:04,444 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/func_despiked_0".
201112-22:57:04,450 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-071_ses-1_task-matching_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/func_despiked_0/sub-071_ses-1_task-matching_run-1_bold_calc.nii.gz
201112-22:57:04,699 nipype.interface INFO:
stderr 2020-11-12T22:57:04.698952:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:57:04,699 nipype.interface INFO:
stderr 2020-11-12T22:57:04.699306:++ Authored by: RW Cox
201112-22:57:04,701 nipype.interface INFO:
stderr 2020-11-12T22:57:04.701557:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:57:04,701 nipype.interface INFO:
stderr 2020-11-12T22:57:04.701557: such as /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/func_despiked_0/sub-071_ses-1_task-matching_run-1_bold_calc.nii.gz,
201112-22:57:04,701 nipype.interface INFO:
stderr 2020-11-12T22:57:04.701557: or viewing/combining it with volumes of differing obliquity,
201112-22:57:04,701 nipype.interface INFO:
stderr 2020-11-12T22:57:04.701557: you should consider running:
201112-22:57:04,702 nipype.interface INFO:
stderr 2020-11-12T22:57:04.701557: 3dWarp -deoblique
201112-22:57:04,702 nipype.interface INFO:
stderr 2020-11-12T22:57:04.701557: on this and other oblique datasets in the same session.
201112-22:57:04,702 nipype.interface INFO:
stderr 2020-11-12T22:57:04.701557: See 3dWarp -help for details.
201112-22:57:04,702 nipype.interface INFO:
stderr 2020-11-12T22:57:04.702392:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/func_despiked_0/sub-071_ses-1_task-matching_run-1_bold_calc.nii.gz is 25.736012 degrees from plumb.
201112-22:57:04,702 nipype.interface INFO:
stderr 2020-11-12T22:57:04.702579:++ Input dataset is in short format, but output will be in float format
201112-22:57:04,702 nipype.interface INFO:
stderr 2020-11-12T22:57:04.702749:++ ignoring first 0 time points, using last 99
201112-22:57:04,702 nipype.interface INFO:
stderr 2020-11-12T22:57:04.702917:++ using 99 time points => -corder 3
201112-22:57:04,703 nipype.interface INFO:
stderr 2020-11-12T22:57:04.703090:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/func_despiked_0/sub-071_ses-1_task-matching_run-1_bold_calc.nii.gz
201112-22:57:05,58 nipype.interface INFO:
stderr 2020-11-12T22:57:05.058290:++ 35801 voxels in the automask [out of 139264 in dataset]
201112-22:57:05,63 nipype.interface INFO:
stderr 2020-11-12T22:57:05.063733:++ 60315 voxels in the dilated automask [out of 139264 in dataset]
201112-22:57:05,72 nipype.interface INFO:
stderr 2020-11-12T22:57:05.071980:++ Procesing time series with OLD model fit algorithm
201112-22:57:05,72 nipype.interface INFO:
stderr 2020-11-12T22:57:05.072170:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-22:57:05,72 nipype.interface INFO:
stderr 2020-11-12T22:57:05.072329: + [ 3.457% .. 0.072% of normal distribution]
201112-22:57:05,72 nipype.interface INFO:
stderr 2020-11-12T22:57:05.072477: + [ 8.839% .. 3.125% of Laplace distribution]
201112-22:57:05,72 nipype.interface INFO:
stderr 2020-11-12T22:57:05.072636:++ start OpenMP thread #0
201112-22:57:08,495 nipype.interface INFO:
stderr 2020-11-12T22:57:08.494935:...........................
201112-22:57:08,495 nipype.interface INFO:
stderr 2020-11-12T22:57:08.495428:++ Elapsed despike time = 3s 423ms
201112-22:57:08,495 nipype.interface INFO:
stderr 2020-11-12T22:57:08.495577:
201112-22:57:08,496 nipype.interface INFO:
stderr 2020-11-12T22:57:08.496274:++ FINAL: 5971185 data points, 446343 edits [7.475%], 95954 big edits [1.607%]
201112-22:57:11,702 nipype.interface INFO:
stderr 2020-11-12T22:57:11.702507:++ Output dataset ./sub-071_ses-1_task-matching_run-1_bold_calc_despike.nii.gz
201112-22:57:11,893 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_despiked_0".
201112-22:57:11,895 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_matching_run-1/slice_timing".
201112-22:57:11,903 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:57:11,904 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_matching_run-1/slice_timing/sub-071_ses-1_task-matching_run-1_bold_calc_despike.nii.gz
201112-22:57:12,115 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:57:12,146 nipype.interface INFO:
stderr 2020-11-12T22:57:12.146902:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:57:12,149 nipype.interface INFO:
stderr 2020-11-12T22:57:12.149207:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201112-22:57:12,149 nipype.interface INFO:
stderr 2020-11-12T22:57:12.149207: such as /outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_matching_run-1/slice_timing/sub-071_ses-1_task-matching_run-1_bold_calc_despike.nii.gz,
201112-22:57:12,149 nipype.interface INFO:
stderr 2020-11-12T22:57:12.149207: or viewing/combining it with volumes of differing obliquity,
201112-22:57:12,149 nipype.interface INFO:
stderr 2020-11-12T22:57:12.149207: you should consider running:
201112-22:57:12,149 nipype.interface INFO:
stderr 2020-11-12T22:57:12.149207: 3dWarp -deoblique
201112-22:57:12,149 nipype.interface INFO:
stderr 2020-11-12T22:57:12.149207: on this and other oblique datasets in the same session.
201112-22:57:12,149 nipype.interface INFO:
stderr 2020-11-12T22:57:12.149207: See 3dWarp -help for details.
201112-22:57:12,149 nipype.interface INFO:
stderr 2020-11-12T22:57:12.149916:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-1/func_slice_timing_correction_0/_scan_matching_run-1/slice_timing/sub-071_ses-1_task-matching_run-1_bold_calc_despike.nii.gz is 25.736012 degrees from plumb.
201112-22:57:15,839 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_slice_timing_correction_0.slice_timing".
201112-22:57:15,841 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique".
201112-22:57:15,888 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift.nii.gz
201112-22:57:16,135 nipype.interface INFO:
stderr 2020-11-12T22:57:16.135193:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:57:16,135 nipype.interface INFO:
stderr 2020-11-12T22:57:16.135522:++ Authored by: RW Cox
201112-22:57:16,137 nipype.interface INFO:
stderr 2020-11-12T22:57:16.137438:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift.nii.gz
201112-22:57:16,138 nipype.interface INFO:
stderr 2020-11-12T22:57:16.138073: + deoblique
201112-22:57:16,138 nipype.interface INFO:
stderr 2020-11-12T22:57:16.138267: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_deoblique/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-22:57:17,813 nipype.interface INFO:
stderr 2020-11-12T22:57:17.813840:++ 3drefit processed 1 datasets
201112-22:57:17,998 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:57:17,999 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_reorient".
201112-22:57:18,7 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_reorient/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift.nii.gz
201112-22:57:20,265 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:57:20,266 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_RPI".
201112-22:57:20,273 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_RPI/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-22:57:20,523 nipype.interface INFO:
stderr 2020-11-12T22:57:20.523331:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:57:20,523 nipype.interface INFO:
stderr 2020-11-12T22:57:20.523828:++ Authored by: KR Hammett & RW Cox
201112-22:57:20,993 nipype.interface INFO:
stderr 2020-11-12T22:57:20.992957:++ Output dataset ./sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-22:57:21,147 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:57:21,148 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_generate_ref".
201112-22:57:21,155 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_RPI/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_generate_ref/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-22:57:21,394 nipype.interface INFO:
stderr 2020-11-12T22:57:21.394795:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:57:21,395 nipype.interface INFO:
stderr 2020-11-12T22:57:21.395122:++ Authored by: RW Cox
201112-22:57:21,402 nipype.interface INFO:
stderr 2020-11-12T22:57:21.402475:++ Coarse del was 10, replaced with 3
201112-22:58:42,303 nipype.interface INFO:
stderr 2020-11-12T22:58:42.303817:++ Max displacement in automask = 0.89 (mm) at sub-brick 68
201112-22:58:42,304 nipype.interface INFO:
stderr 2020-11-12T22:58:42.304387:++ Max delta displ in automask = 0.78 (mm) at sub-brick 68
201112-22:58:45,909 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:58:45,911 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_motion".
201112-22:58:45,917 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_motion/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-22:58:46,162 nipype.interface INFO:
stderr 2020-11-12T22:58:46.162160:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:58:46,162 nipype.interface INFO:
stderr 2020-11-12T22:58:46.162463:++ Authored by: KR Hammett & RW Cox
201112-22:58:46,774 nipype.interface INFO:
stderr 2020-11-12T22:58:46.774521:++ Output dataset ./sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-22:58:46,928 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:58:46,929 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_motion_correct_mcflirt".
201112-22:58:46,937 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_reorient/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_motion_correct_mcflirt/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_get_mean_motion/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:59:02,616 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:59:02,624 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_motion_correct".
201112-22:59:02,632 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:59:02,860 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_motion_correct".
201112-22:59:02,862 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_mean_skull".
201112-22:59:02,868 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_mean_skull/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-22:59:03,120 nipype.interface INFO:
stderr 2020-11-12T22:59:03.120606:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:59:03,121 nipype.interface INFO:
stderr 2020-11-12T22:59:03.121482:++ Authored by: KR Hammett & RW Cox
201112-22:59:03,614 nipype.interface INFO:
stderr 2020-11-12T22:59:03.614604:++ Output dataset ./sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-22:59:03,767 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:59:03,768 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass".
201112-22:59:03,774 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_mean_skull/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:59:05,594 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:59:05,596 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_dilate".
201112-22:59:05,601 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_dilate/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:59:06,268 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:59:06,269 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_mask".
201112-22:59:06,276 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_dilate/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_mask/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:59:06,677 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:59:06,679 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/unifize".
201112-22:59:06,686 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/unifize/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:59:06,933 nipype.interface INFO:
stderr 2020-11-12T22:59:06.933270:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:00:24,142 nipype.interface INFO:
stderr 2020-11-12T23:00:24.142309: + Pre-processing: IAV..UW[s3943]Im
201112-23:00:24,157 nipype.interface INFO:
stderr 2020-11-12T23:00:24.157298:++ Output dataset ./uni.nii.gz
201112-23:00:24,157 nipype.interface INFO:
stderr 2020-11-12T23:00:24.157574:++ ===== Elapsed = 77.2 sec
201112-23:00:24,333 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-23:00:24,335 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass".
201112-23:00:24,341 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass/uni.nii.gz
201112-23:00:24,589 nipype.interface INFO:
stderr 2020-11-12T23:00:24.589336:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:00:24,589 nipype.interface INFO:
stderr 2020-11-12T23:00:24.589684:++ Authored by: Emperor Zhark
201112-23:00:24,592 nipype.interface INFO:
stderr 2020-11-12T23:00:24.592280:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass/uni.nii.gz
201112-23:00:24,598 nipype.interface INFO:
stderr 2020-11-12T23:00:24.598262:++ Forming automask
201112-23:00:24,600 nipype.interface INFO:
stderr 2020-11-12T23:00:24.600689: + Fixed clip level = 399.287048
201112-23:00:24,604 nipype.interface INFO:
stderr 2020-11-12T23:00:24.604014: + Used gradual clip level = 363.358582 .. 502.661804
201112-23:00:24,604 nipype.interface INFO:
stderr 2020-11-12T23:00:24.604228: + Number voxels above clip level = 32037
201112-23:00:24,604 nipype.interface INFO:
stderr 2020-11-12T23:00:24.604385: + Clustering voxels ...
201112-23:00:24,605 nipype.interface INFO:
stderr 2020-11-12T23:00:24.605550: + Largest cluster has 32035 voxels
201112-23:00:24,607 nipype.interface INFO:
stderr 2020-11-12T23:00:24.607183: + Clustering voxels ...
201112-23:00:24,608 nipype.interface INFO:
stderr 2020-11-12T23:00:24.608334: + Largest cluster has 31656 voxels
201112-23:00:24,611 nipype.interface INFO:
stderr 2020-11-12T23:00:24.611710: + Filled 835 voxels in small holes; now have 32491 voxels
201112-23:00:24,613 nipype.interface INFO:
stderr 2020-11-12T23:00:24.613939: + Filled 1 voxels in large holes; now have 32492 voxels
201112-23:00:24,615 nipype.interface INFO:
stderr 2020-11-12T23:00:24.615209: + Clustering voxels ...
201112-23:00:24,616 nipype.interface INFO:
stderr 2020-11-12T23:00:24.616322: + Largest cluster has 32491 voxels
201112-23:00:24,616 nipype.interface INFO:
stderr 2020-11-12T23:00:24.616552: + Clustering non-brain voxels ...
201112-23:00:24,616 nipype.interface INFO:
stderr 2020-11-12T23:00:24.616695: + Clustering voxels ...
201112-23:00:24,619 nipype.interface INFO:
stderr 2020-11-12T23:00:24.619588: + Largest cluster has 106682 voxels
201112-23:00:24,619 nipype.interface INFO:
stderr 2020-11-12T23:00:24.619918: + Mask now has 32582 voxels
201112-23:00:24,620 nipype.interface INFO:
stderr 2020-11-12T23:00:24.620081:++ Dilating automask
201112-23:00:24,627 nipype.interface INFO:
stderr 2020-11-12T23:00:24.627846: + Clustering voxels ...
201112-23:00:24,630 nipype.interface INFO:
stderr 2020-11-12T23:00:24.630420: + Largest cluster has 100534 voxels
201112-23:00:24,630 nipype.interface INFO:
stderr 2020-11-12T23:00:24.630796:++ 38730 voxels in the mask [out of 139264: 27.81%]
201112-23:00:24,630 nipype.interface INFO:
stderr 2020-11-12T23:00:24.630967:++ first 11 x-planes are zero [from R]
201112-23:00:24,631 nipype.interface INFO:
stderr 2020-11-12T23:00:24.631140:++ last 9 x-planes are zero [from L]
201112-23:00:24,631 nipype.interface INFO:
stderr 2020-11-12T23:00:24.631277:++ first 1 y-planes are zero [from P]
201112-23:00:24,631 nipype.interface INFO:
stderr 2020-11-12T23:00:24.631423:++ last 5 y-planes are zero [from A]
201112-23:00:24,631 nipype.interface INFO:
stderr 2020-11-12T23:00:24.631556:++ first 0 z-planes are zero [from I]
201112-23:00:24,631 nipype.interface INFO:
stderr 2020-11-12T23:00:24.631687:++ last 0 z-planes are zero [from S]
201112-23:00:24,635 nipype.interface INFO:
stderr 2020-11-12T23:00:24.635476:++ Output dataset ./uni_mask.nii.gz
201112-23:00:24,635 nipype.interface INFO:
stderr 2020-11-12T23:00:24.635649:++ applying mask to original data
201112-23:00:24,636 nipype.interface INFO:
stderr 2020-11-12T23:00:24.636322:++ Writing masked data
201112-23:00:24,650 nipype.interface INFO:
stderr 2020-11-12T23:00:24.650328:++ Output dataset ./uni_masked.nii.gz
201112-23:00:24,650 nipype.interface INFO:
stderr 2020-11-12T23:00:24.650649:++ CPU time = 0.000000 sec
201112-23:00:24,800 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-23:00:24,802 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks".
201112-23:00:24,808 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_first_pass/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-23:00:25,214 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-23:00:25,216 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-23:00:25,221 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-23:00:25,450 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-23:00:25,452 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-23:00:25,458 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-23:00:25,702 nipype.interface INFO:
stderr 2020-11-12T23:00:25.702809:++ no -frac option: defaulting to -union
201112-23:00:25,703 nipype.interface INFO:
stderr 2020-11-12T23:00:25.703342:++ processing 1 input dataset(s), NN=2...
201112-23:00:25,703 nipype.interface INFO:
stderr 2020-11-12T23:00:25.703560:++ padding all datasets by 0 (for dilations)
201112-23:00:25,707 nipype.interface INFO:
stderr 2020-11-12T23:00:25.707941:++ frac 0 over 1 volumes gives min count 0
201112-23:00:25,708 nipype.interface INFO:
stderr 2020-11-12T23:00:25.708356:++ voxel limits: 0 clipped, 38659 survived, 100605 were zero
201112-23:00:25,708 nipype.interface INFO:
stderr 2020-11-12T23:00:25.708532:++ writing result sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-23:00:25,713 nipype.interface INFO:
stderr 2020-11-12T23:00:25.713239:++ Output dataset ./sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-23:00:25,863 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-23:00:25,864 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_functional_brain_mask".
201112-23:00:25,872 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:00:26,104 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask".
201112-23:00:26,106 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/functional_brain_mask_derivative_0".
201112-23:00:26,111 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-23:00:26,323 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-23:00:26,329 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-23:00:26,813 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201112-23:00:26,831 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.functional_brain_mask_derivative_0".
201112-23:00:26,832 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_extract_brain".
201112-23:00:26,842 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_motion_correct_mcflirt/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-23:00:27,93 nipype.interface INFO:
stderr 2020-11-12T23:00:27.093376:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:00:27,93 nipype.interface INFO:
stderr 2020-11-12T23:00:27.093738:++ Authored by: A cast of thousands
201112-23:00:29,490 nipype.interface INFO:
stderr 2020-11-12T23:00:29.490210:++ Output dataset ./sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-23:00:29,665 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-23:00:29,666 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize".
201112-23:00:29,672 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/func_extract_brain/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-23:00:31,521 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-23:00:31,523 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-23:00:31,528 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-23:00:32,291 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.GlobalSignal_mean".
201112-23:00:32,292 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-23:00:32,297 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-23:00:32,547 nipype.interface INFO:
stderr 2020-11-12T23:00:32.547321:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:00:32,547 nipype.interface INFO:
stderr 2020-11-12T23:00:32.547732:++ Authored by: KR Hammett & RW Cox
201112-23:00:32,983 nipype.interface INFO:
stderr 2020-11-12T23:00:32.983472:++ Output dataset ./sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-23:00:33,134 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.functional_mean".
201112-23:00:33,136 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-1/std_dev".
201112-23:00:33,142 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-1/std_dev/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-23:00:33,384 nipype.interface INFO:
stderr 2020-11-12T23:00:33.383954:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:00:33,384 nipype.interface INFO:
stderr 2020-11-12T23:00:33.384263:++ Authored by: KR Hammett & RW Cox
201112-23:00:33,790 nipype.interface INFO:
stderr 2020-11-12T23:00:33.790793:++ Output dataset ./sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-23:00:33,942 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev".
201112-23:00:33,943 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_functional_preprocessed".
201112-23:00:33,950 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:00:34,179 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed".
201112-23:00:34,181 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mask_normalize".
201112-23:00:34,186 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mask_normalize/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-23:00:35,57 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-23:00:35,58 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_functional_preprocessed_mask".
201112-23:00:35,65 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:00:35,291 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_preprocessed_mask".
201112-23:00:35,293 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean".
201112-23:00:35,298 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-23:00:35,542 nipype.interface INFO:
stderr 2020-11-12T23:00:35.542070:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:00:35,542 nipype.interface INFO:
stderr 2020-11-12T23:00:35.542376:++ Authored by: KR Hammett & RW Cox
201112-23:00:35,973 nipype.interface INFO:
stderr 2020-11-12T23:00:35.973453:++ Output dataset ./sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-23:00:36,128 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-23:00:36,129 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_mean_functional".
201112-23:00:36,136 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:00:36,362 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_mean_functional".
201112-23:00:36,364 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/norm_motion_params".
201112-23:00:36,369 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-23:00:36,600 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-23:00:36,602 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_slice_time_corrected".
201112-23:00:36,608 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:00:36,842 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_slice_time_corrected".
201112-23:00:36,844 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_raw_functional".
201112-23:00:36,851 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-23:00:37,167 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_raw_functional".
201112-23:00:37,169 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_gather_0/_scan_matching_run-1/check_func_scan".
201112-23:00:37,195 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-23:00:37,426 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_gather_0.check_func_scan".
201112-23:00:37,436 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_dataflow_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_dataflow_0/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3".
201112-23:00:37,440 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-23:00:37,711 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_dataflow_0.check_for_s3".
201112-23:00:37,713 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_dataflow_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_dataflow_0/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3".
201112-23:00:37,716 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-23:00:37,999 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_dataflow_0.check_for_s3".
201112-23:00:38,1 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_tmpl" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl".
201112-23:00:38,6 nipype.workflow INFO:
[Node] Running "lap_tmpl" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 T_template0_maths.nii.gz Laplacian /ants_template/oasis/T_template0.nii.gz 1.5 1
201112-23:00:47,640 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_tmpl".
201112-23:00:47,642 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.mrg_tmpl" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/mrg_tmpl".
201112-23:00:47,648 nipype.workflow INFO:
[Node] Running "mrg_tmpl" ("nipype.interfaces.utility.base.Merge")
201112-23:00:47,877 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.mrg_tmpl".
201112-23:00:47,878 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_tmpl" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/res_tmpl".
201112-23:00:47,883 nipype.workflow INFO:
[Node] Running "res_tmpl" ("CPAC.utils.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command:
ResampleImageBySpacing 3 /ants_template/oasis/T_template0.nii.gz T_template0_resampled.nii.gz 4 4 4 1
201112-23:00:48,512 nipype.interface INFO:
stdout 2020-11-12T23:00:48.512695: spacing [1, 1, 1] dim 3
201112-23:00:48,513 nipype.interface INFO:
stdout 2020-11-12T23:00:48.513188: spacing2 [4, 4, 4]
201112-23:00:48,513 nipype.interface INFO:
stdout 2020-11-12T23:00:48.513383: smoothing by : 3 dir 0
201112-23:00:48,851 nipype.interface INFO:
stdout 2020-11-12T23:00:48.851680: smoothing by : 3 dir 1
201112-23:00:49,269 nipype.interface INFO:
stdout 2020-11-12T23:00:49.269520: smoothing by : 3 dir 2
201112-23:00:50,47 nipype.interface INFO:
stdout 2020-11-12T23:00:50.047922: out space [4, 4, 4]
201112-23:00:50,48 nipype.interface INFO:
stdout 2020-11-12T23:00:50.048265: output size [54, 64, 72] spc [4, 4, 4]
201112-23:00:50,283 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_tmpl".
201112-23:00:50,285 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_gather_0/check_for_s3".
201112-23:00:50,291 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-23:00:50,587 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_gather_0.check_for_s3".
201112-23:00:50,588 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_deoblique".
201112-23:00:50,747 nipype.workflow INFO:
[Node] Running "anat_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-071_ses-1_T1w.nii.gz
201112-23:00:50,998 nipype.interface INFO:
stderr 2020-11-12T23:00:50.998717:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-23:00:50,999 nipype.interface INFO:
stderr 2020-11-12T23:00:50.999090:++ Authored by: RW Cox
201112-23:00:51,8 nipype.interface INFO:
stderr 2020-11-12T23:00:51.008602:** AFNI converts NIFTI_datatype=4 (INT16) in file /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-071_ses-1_T1w.nii.gz to FLOAT32
201112-23:00:51,8 nipype.interface INFO:
stderr 2020-11-12T23:00:51.008908: Warnings of this type will be muted for this session.
201112-23:00:51,9 nipype.interface INFO:
stderr 2020-11-12T23:00:51.008908: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201112-23:00:51,10 nipype.interface INFO:
stderr 2020-11-12T23:00:51.010641:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-071_ses-1_T1w.nii.gz
201112-23:00:51,11 nipype.interface INFO:
stderr 2020-11-12T23:00:51.011354: + deoblique
201112-23:00:51,11 nipype.interface INFO:
stderr 2020-11-12T23:00:51.011563: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-071_ses-1_T1w.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-071_ses-1_T1w.nii.gz in NIFTI storage)
201112-23:00:53,422 nipype.interface INFO:
stderr 2020-11-12T23:00:53.422897:++ 3drefit processed 1 datasets
201112-23:00:53,597 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_deoblique".
201112-23:00:53,598 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient".
201112-23:00:53,605 nipype.workflow INFO:
[Node] Running "anat_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-1_T1w_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-071_ses-1_T1w.nii.gz
201112-23:00:56,567 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_reorient".
201112-23:00:56,568 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_skullstrip_0.skull_edge" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_skullstrip_0/skull_edge".
201112-23:00:56,573 nipype.workflow INFO:
[Node] Running "skull_edge" ("CPAC.utils.interfaces.function.Function")
201112-23:01:00,180 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_skullstrip_0.skull_edge".
201112-23:01:00,182 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_skullstrip_0.montage_skull.resample_o" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_skullstrip_0/montage_skull/resample_o".
201112-23:01:00,187 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201112-23:01:01,625 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_skullstrip_0.montage_skull.resample_o".
201112-23:01:01,627 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.truncate_images" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/truncate_images".
201112-23:01:01,633 nipype.workflow INFO:
[Node] Setting-up "_truncate_images0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/truncate_images/mapflow/_truncate_images0".
201112-23:01:01,638 nipype.workflow INFO:
[Node] Running "_truncate_images0" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-071_ses-1_T1w_resample_maths.nii.gz TruncateImageIntensity /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-071_ses-1_T1w_resample.nii.gz 0.01 0.999 256
201112-23:01:05,146 nipype.workflow INFO:
[Node] Finished "_truncate_images0".
201112-23:01:05,149 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.truncate_images".
201112-23:01:05,149 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.inu_n4" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4".
201112-23:01:05,158 nipype.workflow INFO:
[Node] Setting-up "_inu_n40" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40".
201112-23:01:05,164 nipype.workflow INFO:
[Node] Running "_inu_n40" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/truncate_images/mapflow/_truncate_images0/sub-071_ses-1_T1w_resample_maths.nii.gz --convergence [ 50x50x50x50, 1e-07 ] --output sub-071_ses-1_T1w_resample_maths_corrected.nii.gz --shrink-factor 4
201112-23:04:17,179 nipype.workflow INFO:
[Node] Finished "_inu_n40".
201112-23:04:17,183 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.inu_n4".
201112-23:04:17,184 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_target" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_target".
201112-23:04:17,190 nipype.workflow INFO:
[Node] Running "lap_target" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-071_ses-1_T1w_resample_maths_corrected_maths.nii.gz Laplacian /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-071_ses-1_T1w_resample_maths_corrected.nii.gz 1.5 1
201112-23:04:25,55 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_target".
201112-23:04:25,57 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.mrg_target" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/mrg_target".
201112-23:04:25,62 nipype.workflow INFO:
[Node] Running "mrg_target" ("nipype.interfaces.utility.base.Merge")
201112-23:04:25,289 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.mrg_target".
201112-23:04:25,291 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_target" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/res_target".
201112-23:04:25,297 nipype.workflow INFO:
[Node] Running "res_target" ("CPAC.utils.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command:
ResampleImageBySpacing 3 /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-071_ses-1_T1w_resample_maths_corrected.nii.gz sub-071_ses-1_T1w_resample_maths_corrected_resampled.nii.gz 4 4 4 1
201112-23:04:25,953 nipype.interface INFO:
stdout 2020-11-12T23:04:25.952929: spacing [0.999999, 0.976562, 0.976562] dim 3
201112-23:04:25,953 nipype.interface INFO:
stdout 2020-11-12T23:04:25.953415: spacing2 [4, 4, 4]
201112-23:04:25,953 nipype.interface INFO:
stdout 2020-11-12T23:04:25.953614: smoothing by : 3 dir 0
201112-23:04:26,200 nipype.interface INFO:
stdout 2020-11-12T23:04:26.200144: smoothing by : 3.096 dir 1
201112-23:04:26,497 nipype.interface INFO:
stdout 2020-11-12T23:04:26.497290: smoothing by : 3.096 dir 2
201112-23:04:27,62 nipype.interface INFO:
stdout 2020-11-12T23:04:27.062537: out space [4, 4, 4]
201112-23:04:27,62 nipype.interface INFO:
stdout 2020-11-12T23:04:27.062878: output size [43, 62, 62] spc [4, 4, 4]
201112-23:04:27,286 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_target".
201112-23:04:27,288 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.init_aff" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/init_aff".
201112-23:04:27,296 nipype.workflow INFO:
[Node] Running "init_aff" ("CPAC.utils.interfaces.ants.AI"), a CommandLine Interface with command:
antsAI -c [10,0.000001,10] -d 3 -x /ants_template/oasis/T_template0_BrainCerebellumRegistrationMask.nii.gz -m Mattes[/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/res_tmpl/T_template0_resampled.nii.gz,/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/res_target/sub-071_ses-1_T1w_resample_maths_corrected_resampled.nii.gz,32,Regular,0.250000] -o initialization.mat -p 0 -s [15.000000,0.100000] -t Affine[0.100000] -v 1
201112-23:04:27,824 nipype.interface INFO:
stdout 2020-11-12T23:04:27.824217:Using the Mattes MI metric (number of bins = 32)
201112-23:04:33,490 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.init_aff".
201112-23:04:33,493 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.norm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/norm".
201112-23:04:33,507 nipype.workflow INFO:
[Node] Running "norm" ("CPAC.utils.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --masks /ants_template/oasis/T_template0_BrainCerebellumRegistrationMask.nii.gz --float 1 --initial-moving-transform [ /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ anat_to_template, anat_to_template_Warped.nii.gz ] --transform Rigid[ 0.1 ] --metric MI[ /ants_template/oasis/T_template0.nii.gz, /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-071_ses-1_T1w_resample_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --transform Affine[ 0.1 ] --metric MI[ /ants_template/oasis/T_template0.nii.gz, /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-071_ses-1_T1w_resample_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /ants_template/oasis/T_template0.nii.gz, /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-071_ses-1_T1w_resample_maths_corrected.nii.gz, 0.5, 4, None, 1 ] --metric CC[ /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl/T_template0_maths.nii.gz, /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_target/sub-071_ses-1_T1w_resample_maths_corrected_maths.nii.gz, 0.5, 4, None, 1 ] --convergence [ 50x10x0, 1e-09, 15 ] --smoothing-sigmas 2.0x1.0x0.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 -v --winsorize-image-intensities [ 0.025, 0.975 ] --write-composite-transform 0
201112-23:04:33,786 nipype.interface INFO:
stdout 2020-11-12T23:04:33.786480:All_Command_lines_OK
201112-23:04:33,786 nipype.interface INFO:
stdout 2020-11-12T23:04:33.786892:Using single precision for computations.
201112-23:04:33,946 nipype.interface INFO:
stdout 2020-11-12T23:04:33.946698:=============================================================================
201112-23:04:33,946 nipype.interface INFO:
stdout 2020-11-12T23:04:33.946884:The composite transform comprises the following transforms (in order):
201112-23:04:33,947 nipype.interface INFO:
stdout 2020-11-12T23:04:33.947037: 1. /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/init_aff/initialization.mat (type = AffineTransform)
201112-23:04:33,947 nipype.interface INFO:
stdout 2020-11-12T23:04:33.947181:=============================================================================
201112-23:04:33,947 nipype.interface INFO:
stdout 2020-11-12T23:04:33.947336: Reading mask(s).
201112-23:04:33,947 nipype.interface INFO:
stdout 2020-11-12T23:04:33.947470: Registration stage 0
201112-23:04:34,91 nipype.interface INFO:
stdout 2020-11-12T23:04:34.091746: Fixed mask = /ants_template/oasis/T_template0_BrainCerebellumRegistrationMask.nii.gz
201112-23:04:34,92 nipype.interface INFO:
stdout 2020-11-12T23:04:34.092165: number of levels = 4
201112-23:04:34,92 nipype.interface INFO:
stdout 2020-11-12T23:04:34.092348: number of levels = 4
201112-23:04:34,92 nipype.interface INFO:
stdout 2020-11-12T23:04:34.092519: number of levels = 3
201112-23:04:34,92 nipype.interface INFO:
stdout 2020-11-12T23:04:34.092690: fixed image: /ants_template/oasis/T_template0.nii.gz
201112-23:04:34,92 nipype.interface INFO:
stdout 2020-11-12T23:04:34.092829: moving image: /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-071_ses-1_T1w_resample_maths_corrected.nii.gz
201112-23:04:34,827 nipype.interface INFO:
stdout 2020-11-12T23:04:34.827471: fixed image: /ants_template/oasis/T_template0.nii.gz
201112-23:04:34,827 nipype.interface INFO:
stdout 2020-11-12T23:04:34.827809: moving image: /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-071_ses-1_T1w_resample_maths_corrected.nii.gz
201112-23:04:35,544 nipype.interface INFO:
stdout 2020-11-12T23:04:35.544368: fixed image: /ants_template/oasis/T_template0.nii.gz
201112-23:04:35,544 nipype.interface INFO:
stdout 2020-11-12T23:04:35.544693: moving image: /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-071_ses-1_T1w_resample_maths_corrected.nii.gz
201112-23:04:36,270 nipype.interface INFO:
stdout 2020-11-12T23:04:36.270485: fixed image: /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl/T_template0_maths.nii.gz
201112-23:04:36,270 nipype.interface INFO:
stdout 2020-11-12T23:04:36.270808: moving image: /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_target/sub-071_ses-1_T1w_resample_maths_corrected_maths.nii.gz
201112-23:04:37,12 nipype.interface INFO:
stdout 2020-11-12T23:04:37.012119:Dimension = 3
201112-23:04:37,12 nipype.interface INFO:
stdout 2020-11-12T23:04:37.012683:Number of stages = 3
201112-23:04:37,12 nipype.interface INFO:
stdout 2020-11-12T23:04:37.012831:Use Histogram Matching true
201112-23:04:37,12 nipype.interface INFO:
stdout 2020-11-12T23:04:37.012968:Winsorize image intensities true
201112-23:04:37,13 nipype.interface INFO:
stdout 2020-11-12T23:04:37.013122:Lower quantile = 0.025
201112-23:04:37,13 nipype.interface INFO:
stdout 2020-11-12T23:04:37.013259:Upper quantile = 0.975
201112-23:04:37,13 nipype.interface INFO:
stdout 2020-11-12T23:04:37.013393:Stage 1 State
201112-23:04:37,13 nipype.interface INFO:
stdout 2020-11-12T23:04:37.013526: Image metric = Mattes
201112-23:04:37,13 nipype.interface INFO:
stdout 2020-11-12T23:04:37.013690: Fixed image = Image (0x555555c46520)
201112-23:04:37,13 nipype.interface INFO:
stdout 2020-11-12T23:04:37.013690: RTTI typeinfo: itk::Image<float, 3u>
201112-23:04:37,13 nipype.interface INFO:
stdout 2020-11-12T23:04:37.013928: Reference Count: 2
201112-23:04:37,14 nipype.interface INFO:
stdout 2020-11-12T23:04:37.014091: Modified Time: 1602
201112-23:04:37,14 nipype.interface INFO:
stdout 2020-11-12T23:04:37.014238: Debug: Off
201112-23:04:37,14 nipype.interface INFO:
stdout 2020-11-12T23:04:37.014238: Object Name:
201112-23:04:37,14 nipype.interface INFO:
stdout 2020-11-12T23:04:37.014461: Observers:
201112-23:04:37,14 nipype.interface INFO:
stdout 2020-11-12T23:04:37.014461: none
201112-23:04:37,14 nipype.interface INFO:
stdout 2020-11-12T23:04:37.014461: Source: (none)
201112-23:04:37,14 nipype.interface INFO:
stdout 2020-11-12T23:04:37.014461: Source output name: (none)
201112-23:04:37,14 nipype.interface INFO:
stdout 2020-11-12T23:04:37.014461: Release Data: Off
201112-23:04:37,14 nipype.interface INFO:
stdout 2020-11-12T23:04:37.014461: Data Released: False
201112-23:04:37,14 nipype.interface INFO:
stdout 2020-11-12T23:04:37.014461: Global Release Data: Off
201112-23:04:37,15 nipype.interface INFO:
stdout 2020-11-12T23:04:37.014461: PipelineMTime: 0
201112-23:04:37,15 nipype.interface INFO:
stdout 2020-11-12T23:04:37.015379: UpdateMTime: 1435
201112-23:04:37,15 nipype.interface INFO:
stdout 2020-11-12T23:04:37.015542: RealTimeStamp: 0 seconds
201112-23:04:37,15 nipype.interface INFO:
stdout 2020-11-12T23:04:37.015680: LargestPossibleRegion:
201112-23:04:37,15 nipype.interface INFO:
stdout 2020-11-12T23:04:37.015813: Dimension: 3
201112-23:04:37,15 nipype.interface INFO:
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201112-23:04:37,16 nipype.interface INFO:
stdout 2020-11-12T23:04:37.016110: Size: [216, 256, 291]
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201112-23:04:37,16 nipype.interface INFO:
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201112-23:04:37,16 nipype.interface INFO:
stdout 2020-11-12T23:04:37.016634: Size: [216, 256, 291]
201112-23:04:37,16 nipype.interface INFO:
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201112-23:04:37,16 nipype.interface INFO:
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201112-23:04:37,17 nipype.interface INFO:
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201112-23:04:37,17 nipype.interface INFO:
stdout 2020-11-12T23:04:37.017156: Size: [216, 256, 291]
201112-23:04:37,17 nipype.interface INFO:
stdout 2020-11-12T23:04:37.017289: Spacing: [1, 1, 1]
201112-23:04:37,17 nipype.interface INFO:
stdout 2020-11-12T23:04:37.017424: Origin: [0, 293, 0]
201112-23:04:37,17 nipype.interface INFO:
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201112-23:04:37,17 nipype.interface INFO:
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201112-23:04:37,17 nipype.interface INFO:
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201112-23:04:37,17 nipype.interface INFO:
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201112-23:04:37,18 nipype.interface INFO:
stdout 2020-11-12T23:04:37.018056: IndexToPointMatrix:
201112-23:04:37,18 nipype.interface INFO:
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201112-23:04:37,19 nipype.interface INFO:
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stdout 2020-11-12T23:04:37.019575: PixelContainer:
201112-23:04:37,19 nipype.interface INFO:
stdout 2020-11-12T23:04:37.019715: ImportImageContainer (0x555555c355d0)
201112-23:04:37,19 nipype.interface INFO:
stdout 2020-11-12T23:04:37.019715: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201112-23:04:37,20 nipype.interface INFO:
stdout 2020-11-12T23:04:37.019983: Reference Count: 1
201112-23:04:37,20 nipype.interface INFO:
stdout 2020-11-12T23:04:37.020192: Modified Time: 1432
201112-23:04:37,20 nipype.interface INFO:
stdout 2020-11-12T23:04:37.020331: Debug: Off
201112-23:04:37,20 nipype.interface INFO:
stdout 2020-11-12T23:04:37.020331: Object Name:
201112-23:04:37,20 nipype.interface INFO:
stdout 2020-11-12T23:04:37.020557: Observers:
201112-23:04:37,20 nipype.interface INFO:
stdout 2020-11-12T23:04:37.020557: none
201112-23:04:37,20 nipype.interface INFO:
stdout 2020-11-12T23:04:37.020557: Pointer: 0x2aaab48b5010
201112-23:04:37,29 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Container manages memory: true
201112-23:04:37,29 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Size: 16091136
201112-23:04:37,29 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Capacity: 16091136
201112-23:04:37,29 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:
201112-23:04:37,29 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Moving image = Image (0x555555c43360)
201112-23:04:37,29 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: RTTI typeinfo: itk::Image<float, 3u>
201112-23:04:37,30 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Reference Count: 2
201112-23:04:37,30 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Modified Time: 1603
201112-23:04:37,30 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Debug: Off
201112-23:04:37,30 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Object Name:
201112-23:04:37,30 nipype.interface INFO:
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201112-23:04:37,30 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: none
201112-23:04:37,30 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Source: (none)
201112-23:04:37,30 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Source output name: (none)
201112-23:04:37,30 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Release Data: Off
201112-23:04:37,30 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Data Released: False
201112-23:04:37,30 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Global Release Data: Off
201112-23:04:37,30 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: PipelineMTime: 0
201112-23:04:37,30 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: UpdateMTime: 1600
201112-23:04:37,31 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: RealTimeStamp: 0 seconds
201112-23:04:37,31 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: LargestPossibleRegion:
201112-23:04:37,31 nipype.interface INFO:
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201112-23:04:37,31 nipype.interface INFO:
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201112-23:04:37,31 nipype.interface INFO:
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201112-23:04:37,32 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Spacing: [0.999999, 0.976562, 0.976562]
201112-23:04:37,32 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Origin: [-66.7863, 113.35, -117.793]
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201112-23:04:37,33 nipype.interface INFO:
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stdout 2020-11-12T23:04:37.029058: PixelContainer:
201112-23:04:37,34 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: ImportImageContainer (0x555555c36680)
201112-23:04:37,34 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201112-23:04:37,34 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Reference Count: 1
201112-23:04:37,34 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Modified Time: 1597
201112-23:04:37,34 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Debug: Off
201112-23:04:37,34 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Object Name:
201112-23:04:37,34 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Observers:
201112-23:04:37,34 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: none
201112-23:04:37,34 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Pointer: 0x2aaab8618010
201112-23:04:37,34 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Container manages memory: true
201112-23:04:37,35 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Size: 11534336
201112-23:04:37,35 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Capacity: 11534336
201112-23:04:37,35 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:
201112-23:04:37,35 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Weighting = 1
201112-23:04:37,35 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Sampling strategy = regular
201112-23:04:37,35 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Number of bins = 32
201112-23:04:37,35 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Radius = 4
201112-23:04:37,35 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Sampling percentage = 0.25
201112-23:04:37,35 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Transform = Rigid
201112-23:04:37,35 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Gradient step = 0.1
201112-23:04:37,35 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Update field sigma (voxel space) = 0
201112-23:04:37,35 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Total field sigma (voxel space) = 0
201112-23:04:37,35 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Update field time sigma = 0
201112-23:04:37,35 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Total field time sigma = 0
201112-23:04:37,36 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Number of time indices = 0
201112-23:04:37,36 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Number of time point samples = 0
201112-23:04:37,36 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:Stage 2 State
201112-23:04:37,36 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Image metric = Mattes
201112-23:04:37,36 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Fixed image = Image (0x555555c45e20)
201112-23:04:37,36 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: RTTI typeinfo: itk::Image<float, 3u>
201112-23:04:37,36 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Reference Count: 2
201112-23:04:37,36 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Modified Time: 1932
201112-23:04:37,36 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Debug: Off
201112-23:04:37,36 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Object Name:
201112-23:04:37,36 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Observers:
201112-23:04:37,36 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: none
201112-23:04:37,36 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Source: (none)
201112-23:04:37,37 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Source output name: (none)
201112-23:04:37,37 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Release Data: Off
201112-23:04:37,37 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Data Released: False
201112-23:04:37,37 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Global Release Data: Off
201112-23:04:37,37 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: PipelineMTime: 0
201112-23:04:37,37 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: UpdateMTime: 1765
201112-23:04:37,37 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: RealTimeStamp: 0 seconds
201112-23:04:37,37 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: LargestPossibleRegion:
201112-23:04:37,37 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Dimension: 3
201112-23:04:37,37 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Index: [0, 0, 0]
201112-23:04:37,37 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Size: [216, 256, 291]
201112-23:04:37,37 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: BufferedRegion:
201112-23:04:37,37 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Dimension: 3
201112-23:04:37,38 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Index: [0, 0, 0]
201112-23:04:37,38 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Size: [216, 256, 291]
201112-23:04:37,38 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: RequestedRegion:
201112-23:04:37,38 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Dimension: 3
201112-23:04:37,38 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Index: [0, 0, 0]
201112-23:04:37,38 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Size: [216, 256, 291]
201112-23:04:37,38 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Spacing: [1, 1, 1]
201112-23:04:37,38 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Origin: [0, 293, 0]
201112-23:04:37,38 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Direction:
201112-23:04:37,38 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:1 0 0
201112-23:04:37,38 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:0 -0 -1
201112-23:04:37,38 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:0 -1 -0
201112-23:04:37,38 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:
201112-23:04:37,39 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: IndexToPointMatrix:
201112-23:04:37,39 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:1 0 0
201112-23:04:37,39 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:0 0 -1
201112-23:04:37,39 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:0 -1 0
201112-23:04:37,39 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:
201112-23:04:37,39 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: PointToIndexMatrix:
201112-23:04:37,39 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:1 0 0
201112-23:04:37,39 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:0 0 -1
201112-23:04:37,39 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:0 -1 0
201112-23:04:37,39 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:
201112-23:04:37,39 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Inverse Direction:
201112-23:04:37,39 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:1 0 0
201112-23:04:37,39 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:0 0 -1
201112-23:04:37,40 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:0 -1 0
201112-23:04:37,40 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:
201112-23:04:37,40 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: PixelContainer:
201112-23:04:37,40 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: ImportImageContainer (0x555555c36800)
201112-23:04:37,40 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201112-23:04:37,40 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Reference Count: 1
201112-23:04:37,40 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Modified Time: 1762
201112-23:04:37,40 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Debug: Off
201112-23:04:37,40 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Object Name:
201112-23:04:37,40 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Observers:
201112-23:04:37,40 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: none
201112-23:04:37,40 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Pointer: 0x2aaabb219010
201112-23:04:37,40 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Container manages memory: true
201112-23:04:37,41 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Size: 16091136
201112-23:04:37,41 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Capacity: 16091136
201112-23:04:37,41 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:
201112-23:04:37,41 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Moving image = Image (0x555555c44e80)
201112-23:04:37,41 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: RTTI typeinfo: itk::Image<float, 3u>
201112-23:04:37,41 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Reference Count: 2
201112-23:04:37,41 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Modified Time: 1933
201112-23:04:37,41 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Debug: Off
201112-23:04:37,41 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Object Name:
201112-23:04:37,41 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Observers:
201112-23:04:37,41 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: none
201112-23:04:37,41 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Source: (none)
201112-23:04:37,41 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Source output name: (none)
201112-23:04:37,42 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Release Data: Off
201112-23:04:37,42 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Data Released: False
201112-23:04:37,42 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Global Release Data: Off
201112-23:04:37,42 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: PipelineMTime: 0
201112-23:04:37,42 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: UpdateMTime: 1930
201112-23:04:37,42 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: RealTimeStamp: 0 seconds
201112-23:04:37,42 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: LargestPossibleRegion:
201112-23:04:37,42 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Dimension: 3
201112-23:04:37,42 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Index: [0, 0, 0]
201112-23:04:37,42 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Size: [176, 256, 256]
201112-23:04:37,42 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: BufferedRegion:
201112-23:04:37,42 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Dimension: 3
201112-23:04:37,42 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Index: [0, 0, 0]
201112-23:04:37,43 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Size: [176, 256, 256]
201112-23:04:37,43 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: RequestedRegion:
201112-23:04:37,43 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Dimension: 3
201112-23:04:37,43 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Index: [0, 0, 0]
201112-23:04:37,43 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Size: [176, 256, 256]
201112-23:04:37,43 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Spacing: [0.999999, 0.976562, 0.976562]
201112-23:04:37,43 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Origin: [-66.7863, 113.35, -117.793]
201112-23:04:37,43 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Direction:
201112-23:04:37,43 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:1 0 0
201112-23:04:37,43 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:0 -1 0
201112-23:04:37,43 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:0 0 1
201112-23:04:37,43 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:
201112-23:04:37,43 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: IndexToPointMatrix:
201112-23:04:37,44 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:0.999999 0 0
201112-23:04:37,44 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:0 -0.976562 0
201112-23:04:37,44 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:0 0 0.976562
201112-23:04:37,44 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:
201112-23:04:37,44 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: PointToIndexMatrix:
201112-23:04:37,44 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:1 0 0
201112-23:04:37,44 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:0 -1.024 0
201112-23:04:37,44 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:0 0 1.024
201112-23:04:37,44 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:
201112-23:04:37,44 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Inverse Direction:
201112-23:04:37,44 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:1 0 0
201112-23:04:37,44 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:0 -1 0
201112-23:04:37,44 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:0 0 1
201112-23:04:37,44 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058:
201112-23:04:37,45 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: PixelContainer:
201112-23:04:37,45 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: ImportImageContainer (0x555555c30560)
201112-23:04:37,45 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201112-23:04:37,45 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Reference Count: 1
201112-23:04:37,45 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Modified Time: 1927
201112-23:04:37,45 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Debug: Off
201112-23:04:37,45 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Object Name:
201112-23:04:37,45 nipype.interface INFO:
stdout 2020-11-12T23:04:37.029058: Observers:
201112-23:04:37,45 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: none
201112-23:04:37,45 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Pointer: 0x2aaabef7c010
201112-23:04:37,46 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Container manages memory: true
201112-23:04:37,46 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Size: 11534336
201112-23:04:37,46 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Capacity: 11534336
201112-23:04:37,46 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:
201112-23:04:37,46 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Weighting = 1
201112-23:04:37,46 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Sampling strategy = regular
201112-23:04:37,46 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Number of bins = 32
201112-23:04:37,46 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Radius = 4
201112-23:04:37,46 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Sampling percentage = 0.25
201112-23:04:37,46 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Transform = Affine
201112-23:04:37,46 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Gradient step = 0.1
201112-23:04:37,46 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Update field sigma (voxel space) = 0
201112-23:04:37,46 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Total field sigma (voxel space) = 0
201112-23:04:37,47 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Update field time sigma = 0
201112-23:04:37,47 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Total field time sigma = 0
201112-23:04:37,47 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Number of time indices = 0
201112-23:04:37,47 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Number of time point samples = 0
201112-23:04:37,47 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:Stage 3 State
201112-23:04:37,47 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Image metric = CC
201112-23:04:37,47 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Fixed image = Image (0x555555c3f580)
201112-23:04:37,47 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: RTTI typeinfo: itk::Image<float, 3u>
201112-23:04:37,47 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Reference Count: 2
201112-23:04:37,47 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Modified Time: 2262
201112-23:04:37,47 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Debug: Off
201112-23:04:37,47 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Object Name:
201112-23:04:37,47 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Observers:
201112-23:04:37,48 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: none
201112-23:04:37,48 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Source: (none)
201112-23:04:37,48 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Source output name: (none)
201112-23:04:37,48 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Release Data: Off
201112-23:04:37,48 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Data Released: False
201112-23:04:37,48 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Global Release Data: Off
201112-23:04:37,48 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: PipelineMTime: 0
201112-23:04:37,48 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: UpdateMTime: 2095
201112-23:04:37,48 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: RealTimeStamp: 0 seconds
201112-23:04:37,48 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: LargestPossibleRegion:
201112-23:04:37,48 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Dimension: 3
201112-23:04:37,48 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Index: [0, 0, 0]
201112-23:04:37,48 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Size: [216, 256, 291]
201112-23:04:37,49 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: BufferedRegion:
201112-23:04:37,49 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Dimension: 3
201112-23:04:37,49 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Index: [0, 0, 0]
201112-23:04:37,49 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Size: [216, 256, 291]
201112-23:04:37,49 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: RequestedRegion:
201112-23:04:37,49 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Dimension: 3
201112-23:04:37,49 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Index: [0, 0, 0]
201112-23:04:37,49 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Size: [216, 256, 291]
201112-23:04:37,49 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Spacing: [1, 1, 1]
201112-23:04:37,49 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Origin: [0, 293, 0]
201112-23:04:37,49 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Direction:
201112-23:04:37,49 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:1 0 0
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stdout 2020-11-12T23:04:37.045717:0 -0 -1
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stdout 2020-11-12T23:04:37.045717:0 -1 -0
201112-23:04:37,60 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:
201112-23:04:37,60 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: IndexToPointMatrix:
201112-23:04:37,60 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:1 0 0
201112-23:04:37,60 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:0 0 -1
201112-23:04:37,60 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:0 -1 0
201112-23:04:37,60 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:
201112-23:04:37,60 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: PointToIndexMatrix:
201112-23:04:37,60 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:1 0 0
201112-23:04:37,60 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:0 0 -1
201112-23:04:37,60 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:0 -1 0
201112-23:04:37,60 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:
201112-23:04:37,60 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Inverse Direction:
201112-23:04:37,61 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:1 0 0
201112-23:04:37,61 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:0 0 -1
201112-23:04:37,61 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:0 -1 0
201112-23:04:37,61 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:
201112-23:04:37,61 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: PixelContainer:
201112-23:04:37,61 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: ImportImageContainer (0x555555c45d80)
201112-23:04:37,61 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201112-23:04:37,61 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Reference Count: 1
201112-23:04:37,61 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Modified Time: 2092
201112-23:04:37,61 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Debug: Off
201112-23:04:37,61 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Object Name:
201112-23:04:37,61 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Observers:
201112-23:04:37,61 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: none
201112-23:04:37,62 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Pointer: 0x2aaac1b7d010
201112-23:04:37,62 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Container manages memory: true
201112-23:04:37,62 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Size: 16091136
201112-23:04:37,62 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Capacity: 16091136
201112-23:04:37,62 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:
201112-23:04:37,62 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Moving image = Image (0x555555c3c870)
201112-23:04:37,62 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: RTTI typeinfo: itk::Image<float, 3u>
201112-23:04:37,62 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Reference Count: 2
201112-23:04:37,62 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Modified Time: 2263
201112-23:04:37,62 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Debug: Off
201112-23:04:37,62 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Object Name:
201112-23:04:37,62 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Observers:
201112-23:04:37,62 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: none
201112-23:04:37,62 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Source: (none)
201112-23:04:37,63 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Source output name: (none)
201112-23:04:37,63 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Release Data: Off
201112-23:04:37,63 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Data Released: False
201112-23:04:37,63 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Global Release Data: Off
201112-23:04:37,63 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: PipelineMTime: 0
201112-23:04:37,63 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: UpdateMTime: 2260
201112-23:04:37,63 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: RealTimeStamp: 0 seconds
201112-23:04:37,63 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: LargestPossibleRegion:
201112-23:04:37,63 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Dimension: 3
201112-23:04:37,63 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Index: [0, 0, 0]
201112-23:04:37,63 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Size: [176, 256, 256]
201112-23:04:37,63 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: BufferedRegion:
201112-23:04:37,63 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Dimension: 3
201112-23:04:37,64 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Index: [0, 0, 0]
201112-23:04:37,64 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Size: [176, 256, 256]
201112-23:04:37,64 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: RequestedRegion:
201112-23:04:37,64 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Dimension: 3
201112-23:04:37,64 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Index: [0, 0, 0]
201112-23:04:37,64 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Size: [176, 256, 256]
201112-23:04:37,64 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Spacing: [0.999999, 0.976562, 0.976562]
201112-23:04:37,64 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Origin: [-66.7863, 113.35, -117.793]
201112-23:04:37,64 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Direction:
201112-23:04:37,64 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:1 0 0
201112-23:04:37,64 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:0 -1 0
201112-23:04:37,64 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:0 0 1
201112-23:04:37,64 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:
201112-23:04:37,65 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: IndexToPointMatrix:
201112-23:04:37,65 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:0.999999 0 0
201112-23:04:37,65 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:0 -0.976562 0
201112-23:04:37,65 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:0 0 0.976562
201112-23:04:37,65 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:
201112-23:04:37,65 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: PointToIndexMatrix:
201112-23:04:37,65 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:1 0 0
201112-23:04:37,65 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:0 -1.024 0
201112-23:04:37,65 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:0 0 1.024
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stdout 2020-11-12T23:04:37.045717:
201112-23:04:37,65 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Inverse Direction:
201112-23:04:37,65 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:1 0 0
201112-23:04:37,65 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:0 -1 0
201112-23:04:37,66 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:0 0 1
201112-23:04:37,66 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:
201112-23:04:37,66 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: PixelContainer:
201112-23:04:37,66 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: ImportImageContainer (0x555555c0f6f0)
201112-23:04:37,66 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201112-23:04:37,66 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Reference Count: 1
201112-23:04:37,66 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Modified Time: 2257
201112-23:04:37,66 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Debug: Off
201112-23:04:37,66 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Object Name:
201112-23:04:37,66 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Observers:
201112-23:04:37,66 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: none
201112-23:04:37,66 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Pointer: 0x2aaac58e0010
201112-23:04:37,66 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Container manages memory: true
201112-23:04:37,67 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Size: 11534336
201112-23:04:37,67 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Capacity: 11534336
201112-23:04:37,67 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:
201112-23:04:37,67 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Weighting = 0.5
201112-23:04:37,67 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Sampling strategy = none
201112-23:04:37,67 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Number of bins = 32
201112-23:04:37,67 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Radius = 4
201112-23:04:37,67 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Sampling percentage = 1
201112-23:04:37,67 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Transform = SyN
201112-23:04:37,67 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Gradient step = 0.1
201112-23:04:37,67 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Update field sigma (voxel space) = 3
201112-23:04:37,67 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Total field sigma (voxel space) = 0
201112-23:04:37,67 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Update field time sigma = 0
201112-23:04:37,68 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Total field time sigma = 0
201112-23:04:37,68 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Number of time indices = 0
201112-23:04:37,68 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: Number of time point samples = 0
201112-23:04:37,68 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:Registration using 3 total stages.
201112-23:04:37,68 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:
201112-23:04:37,68 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717:Stage 0
201112-23:04:37,68 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: iterations = 1000x500x250x100
201112-23:04:37,68 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: convergence threshold = 1e-08
201112-23:04:37,68 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: convergence window size = 10
201112-23:04:37,68 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: number of levels = 4
201112-23:04:37,68 nipype.interface INFO:
stdout 2020-11-12T23:04:37.045717: using the Mattes MI metric (number of bins = 32, weight = 1)
201112-23:04:39,597 nipype.interface INFO:
stdout 2020-11-12T23:04:39.597049: preprocessing: winsorizing the image intensities
201112-23:04:39,597 nipype.interface INFO:
stdout 2020-11-12T23:04:39.597049: preprocessing: histogram matching the images
201112-23:04:39,597 nipype.interface INFO:
stdout 2020-11-12T23:04:39.597529: Shrink factors (level 1 out of 4): [8, 8, 8]
201112-23:04:39,597 nipype.interface INFO:
stdout 2020-11-12T23:04:39.597672: Shrink factors (level 2 out of 4): [4, 4, 4]
201112-23:04:39,597 nipype.interface INFO:
stdout 2020-11-12T23:04:39.597807: Shrink factors (level 3 out of 4): [2, 2, 2]
201112-23:04:39,597 nipype.interface INFO:
stdout 2020-11-12T23:04:39.597937: Shrink factors (level 4 out of 4): [1, 1, 1]
201112-23:04:39,598 nipype.interface INFO:
stdout 2020-11-12T23:04:39.598125: smoothing sigmas per level: [4, 2, 1, 0]
201112-23:04:39,598 nipype.interface INFO:
stdout 2020-11-12T23:04:39.598267: regular sampling (percentage = 0.25)
201112-23:04:39,605 nipype.interface INFO:
stdout 2020-11-12T23:04:39.605046:
201112-23:04:39,605 nipype.interface INFO:
stdout 2020-11-12T23:04:39.605218:*** Running Euler3DTransform registration ***
201112-23:04:39,605 nipype.interface INFO:
stdout 2020-11-12T23:04:39.605361:
201112-23:04:51,256 nipype.interface INFO:
stdout 2020-11-12T23:04:51.256008:DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201112-23:04:51,256 nipype.interface INFO:
stdout 2020-11-12T23:04:51.256400: 2DIAGNOSTIC, 1, -9.490136504173e-01, inf, 1.1654e+01, 1.1654e+01,
201112-23:04:51,264 nipype.interface INFO:
stdout 2020-11-12T23:04:51.264875: 2DIAGNOSTIC, 2, -9.511312842369e-01, inf, 1.1662e+01, 8.2960e-03,
201112-23:04:51,273 nipype.interface INFO:
stdout 2020-11-12T23:04:51.273345: 2DIAGNOSTIC, 3, -9.533469676971e-01, inf, 1.1670e+01, 8.2891e-03,
201112-23:04:51,281 nipype.interface INFO:
stdout 2020-11-12T23:04:51.281820: 2DIAGNOSTIC, 4, -9.552139639854e-01, inf, 1.1678e+01, 8.2960e-03,
201112-23:04:51,290 nipype.interface INFO:
stdout 2020-11-12T23:04:51.290288: 2DIAGNOSTIC, 5, -9.571242332458e-01, inf, 1.1687e+01, 8.2901e-03,
201112-23:04:51,298 nipype.interface INFO:
stdout 2020-11-12T23:04:51.298746: 2DIAGNOSTIC, 6, -9.594413638115e-01, inf, 1.1695e+01, 8.2810e-03,
201112-23:04:51,309 nipype.interface INFO:
stdout 2020-11-12T23:04:51.309017: 2DIAGNOSTIC, 7, -9.669681787491e-01, inf, 1.1705e+01, 1.0098e-02,
201112-23:04:51,317 nipype.interface INFO:
stdout 2020-11-12T23:04:51.317503: 2DIAGNOSTIC, 8, -9.682753682137e-01, inf, 1.1713e+01, 8.2960e-03,
201112-23:04:51,330 nipype.interface INFO:
stdout 2020-11-12T23:04:51.330882: 2DIAGNOSTIC, 9, -9.699602127075e-01, inf, 1.1727e+01, 1.3201e-02,
201112-23:04:51,339 nipype.interface INFO:
stdout 2020-11-12T23:04:51.339927: 2DIAGNOSTIC, 10, -9.706782698631e-01, 1.615435932763e-03, 1.1735e+01, 8.8580e-03,
201112-23:04:51,350 nipype.interface INFO:
stdout 2020-11-12T23:04:51.350264: 2DIAGNOSTIC, 11, -9.713727831841e-01, 1.405746210366e-03, 1.1746e+01, 1.0127e-02,
201112-23:04:51,363 nipype.interface INFO:
stdout 2020-11-12T23:04:51.363881: 2DIAGNOSTIC, 12, -9.718074798584e-01, 1.165164168924e-03, 1.1759e+01, 1.3415e-02,
201112-23:04:51,372 nipype.interface INFO:
stdout 2020-11-12T23:04:51.372520: 2DIAGNOSTIC, 13, -9.720304608345e-01, 9.114724816754e-04, 1.1767e+01, 8.4410e-03,
201112-23:04:51,382 nipype.interface INFO:
stdout 2020-11-12T23:04:51.382830: 2DIAGNOSTIC, 14, -9.738528728485e-01, 6.909580552019e-04, 1.1778e+01, 1.0120e-02,
201112-23:04:51,391 nipype.interface INFO:
stdout 2020-11-12T23:04:51.391455: 2DIAGNOSTIC, 15, -9.744957685471e-01, 4.871078417636e-04, 1.1786e+01, 8.4329e-03,
201112-23:04:51,400 nipype.interface INFO:
stdout 2020-11-12T23:04:51.400113: 2DIAGNOSTIC, 16, -9.746172428131e-01, 3.060953749809e-04, 1.1794e+01, 8.4271e-03,
201112-23:04:51,408 nipype.interface INFO:
stdout 2020-11-12T23:04:51.408840: 2DIAGNOSTIC, 17, -9.748061299324e-01, 2.525033778511e-04, 1.1803e+01, 8.5220e-03,
201112-23:04:51,419 nipype.interface INFO:
stdout 2020-11-12T23:04:51.419172: 2DIAGNOSTIC, 18, -9.753301143646e-01, 2.111461944878e-04, 1.1813e+01, 1.0147e-02,
201112-23:04:51,431 nipype.interface INFO:
stdout 2020-11-12T23:04:51.431112: 2DIAGNOSTIC, 19, -9.767869114876e-01, 2.026215515798e-04, 1.1825e+01, 1.1746e-02,
201112-23:04:51,439 nipype.interface INFO:
stdout 2020-11-12T23:04:51.439731: 2DIAGNOSTIC, 20, -9.774097204208e-01, 1.950880105142e-04, 1.1833e+01, 8.4279e-03,
201112-23:04:51,451 nipype.interface INFO:
stdout 2020-11-12T23:04:51.451919: 2DIAGNOSTIC, 21, -9.775434732437e-01, 1.821690821089e-04, 1.1845e+01, 1.1999e-02,
201112-23:04:51,462 nipype.interface INFO:
stdout 2020-11-12T23:04:51.462473: 2DIAGNOSTIC, 22, -9.775972962379e-01, 1.607348240213e-04, 1.1856e+01, 1.0358e-02,
201112-23:04:51,471 nipype.interface INFO:
stdout 2020-11-12T23:04:51.471105: 2DIAGNOSTIC, 23, -9.776338338852e-01, 1.289927313337e-04, 1.1864e+01, 8.4360e-03,
201112-23:04:51,481 nipype.interface INFO:
stdout 2020-11-12T23:04:51.481480: 2DIAGNOSTIC, 24, -9.776735901833e-01, 1.102215392166e-04, 1.1874e+01, 1.0186e-02,
201112-23:04:51,495 nipype.interface INFO:
stdout 2020-11-12T23:04:51.495012: 2DIAGNOSTIC, 25, -9.776976704597e-01, 9.046183549799e-05, 1.1888e+01, 1.3341e-02,
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stdout 2020-11-12T23:04:51.503794: 2DIAGNOSTIC, 26, -9.777014851570e-01, 6.549086538143e-05, 1.1896e+01, 8.5859e-03,
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201112-23:08:52,60 nipype.interface INFO:
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201112-23:08:52,60 nipype.interface INFO:
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201112-23:08:55,913 nipype.interface INFO:
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201112-23:13:09,507 nipype.interface INFO:
stdout 2020-11-12T23:13:09.507101: 2DIAGNOSTIC, 55, -5.151870250702e-01, 5.801156817142e-07, 5.0948e+02, 4.5888e+00,
201112-23:13:14,95 nipype.interface INFO:
stdout 2020-11-12T23:13:14.095638: 2DIAGNOSTIC, 56, -5.151870250702e-01, 5.686557074114e-07, 5.1406e+02, 4.5881e+00,
201112-23:13:18,677 nipype.interface INFO:
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201112-23:13:23,268 nipype.interface INFO:
stdout 2020-11-12T23:13:23.268880: 2DIAGNOSTIC, 58, -5.151870250702e-01, 5.484787948262e-07, 5.2324e+02, 4.5910e+00,
201112-23:13:27,859 nipype.interface INFO:
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201112-23:13:32,439 nipype.interface INFO:
stdout 2020-11-12T23:13:32.439665: 2DIAGNOSTIC, 60, -5.151870250702e-01, 5.301951091496e-07, 5.3241e+02, 4.5800e+00,
201112-23:13:37,28 nipype.interface INFO:
stdout 2020-11-12T23:13:37.028550: 2DIAGNOSTIC, 61, -5.151870250702e-01, 5.215028977545e-07, 5.3699e+02, 4.5885e+00,
201112-23:13:41,622 nipype.interface INFO:
stdout 2020-11-12T23:13:41.622699: 2DIAGNOSTIC, 62, -5.151870250702e-01, 5.130910949447e-07, 5.4159e+02, 4.5937e+00,
201112-23:13:46,212 nipype.interface INFO:
stdout 2020-11-12T23:13:46.211943: 2DIAGNOSTIC, 63, -5.151870250702e-01, 5.049463993601e-07, 5.4618e+02, 4.5888e+00,
201112-23:13:50,798 nipype.interface INFO:
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201112-23:13:55,378 nipype.interface INFO:
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201112-23:13:59,968 nipype.interface INFO:
stdout 2020-11-12T23:13:59.968204: 2DIAGNOSTIC, 66, -5.151869058609e-01, 4.794263759322e-07, 5.5993e+02, 4.5890e+00,
201112-23:14:04,564 nipype.interface INFO:
stdout 2020-11-12T23:14:04.564868: 2DIAGNOSTIC, 67, -5.151869058609e-01, 4.718122568192e-07, 5.6453e+02, 4.5963e+00,
201112-23:14:09,180 nipype.interface INFO:
stdout 2020-11-12T23:14:09.180868: 2DIAGNOSTIC, 68, -5.151869058609e-01, 4.647136222502e-07, 5.6914e+02, 4.6156e+00,
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stdout 2020-11-12T23:14:13.774473: 2DIAGNOSTIC, 69, -5.151869058609e-01, 4.581358439282e-07, 5.7374e+02, 4.5932e+00,
201112-23:14:18,367 nipype.interface INFO:
stdout 2020-11-12T23:14:18.367567: 2DIAGNOSTIC, 70, -5.151869058609e-01, 4.520291838617e-07, 5.7833e+02, 4.5926e+00,
201112-23:14:22,957 nipype.interface INFO:
stdout 2020-11-12T23:14:22.957255: 2DIAGNOSTIC, 71, -5.151869058609e-01, 4.463128107091e-07, 5.8292e+02, 4.5893e+00,
201112-23:14:27,538 nipype.interface INFO:
stdout 2020-11-12T23:14:27.538522: 2DIAGNOSTIC, 72, -5.151869058609e-01, 4.409116343140e-07, 5.8750e+02, 4.5809e+00,
201112-23:14:32,126 nipype.interface INFO:
stdout 2020-11-12T23:14:32.126407: 2DIAGNOSTIC, 73, -5.151869058609e-01, 4.357723639714e-07, 5.9209e+02, 4.5875e+00,
201112-23:14:36,707 nipype.interface INFO:
stdout 2020-11-12T23:14:36.707322: 2DIAGNOSTIC, 74, -5.151869058609e-01, 4.298833005123e-07, 5.9667e+02, 4.5805e+00,
201112-23:14:41,305 nipype.interface INFO:
stdout 2020-11-12T23:14:41.305666: 2DIAGNOSTIC, 75, -5.151869058609e-01, 4.241512669978e-07, 6.0127e+02, 4.5979e+00,
201112-23:14:45,896 nipype.interface INFO:
stdout 2020-11-12T23:14:45.896659: 2DIAGNOSTIC, 76, -5.151869058609e-01, 4.185700674952e-07, 6.0586e+02, 4.5906e+00,
201112-23:14:50,477 nipype.interface INFO:
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201112-23:14:55,65 nipype.interface INFO:
stdout 2020-11-12T23:14:55.065230: 2DIAGNOSTIC, 78, -5.151869058609e-01, 4.078370352545e-07, 6.1502e+02, 4.5878e+00,
201112-23:14:59,646 nipype.interface INFO:
stdout 2020-11-12T23:14:59.646623: 2DIAGNOSTIC, 79, -5.151869058609e-01, 4.026743454233e-07, 6.1960e+02, 4.5810e+00,
201112-23:15:04,247 nipype.interface INFO:
stdout 2020-11-12T23:15:04.247539: 2DIAGNOSTIC, 80, -5.151869058609e-01, 3.976406901529e-07, 6.2421e+02, 4.6005e+00,
201112-23:15:08,834 nipype.interface INFO:
stdout 2020-11-12T23:15:08.834724: 2DIAGNOSTIC, 81, -5.151869058609e-01, 3.927313514396e-07, 6.2879e+02, 4.5868e+00,
201112-23:15:13,426 nipype.interface INFO:
stdout 2020-11-12T23:15:13.426664: 2DIAGNOSTIC, 82, -5.151869058609e-01, 3.879417533881e-07, 6.3338e+02, 4.5916e+00,
201112-23:15:18,11 nipype.interface INFO:
stdout 2020-11-12T23:15:18.011246: 2DIAGNOSTIC, 83, -5.151869058609e-01, 3.832675474769e-07, 6.3797e+02, 4.5841e+00,
201112-23:15:22,586 nipype.interface INFO:
stdout 2020-11-12T23:15:22.586361: 2DIAGNOSTIC, 84, -5.151869058609e-01, 3.787046694015e-07, 6.4254e+02, 4.5745e+00,
201112-23:15:27,168 nipype.interface INFO:
stdout 2020-11-12T23:15:27.168631: 2DIAGNOSTIC, 85, -5.151869058609e-01, 3.742491401226e-07, 6.4712e+02, 4.5819e+00,
201112-23:15:31,750 nipype.interface INFO:
stdout 2020-11-12T23:15:31.750576: 2DIAGNOSTIC, 86, -5.151869058609e-01, 3.698972363964e-07, 6.5171e+02, 4.5815e+00,
201112-23:15:36,325 nipype.interface INFO:
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201112-23:15:40,918 nipype.interface INFO:
stdout 2020-11-12T23:15:40.918059: 2DIAGNOSTIC, 88, -5.151869058609e-01, 3.614901515903e-07, 6.6087e+02, 4.5919e+00,
201112-23:15:45,494 nipype.interface INFO:
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201112-23:15:50,76 nipype.interface INFO:
stdout 2020-11-12T23:15:50.076292: 2DIAGNOSTIC, 90, -5.151869058609e-01, 3.534567554198e-07, 6.7003e+02, 4.5816e+00,
201112-23:15:54,652 nipype.interface INFO:
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201112-23:16:03,836 nipype.interface INFO:
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201112-23:16:08,431 nipype.interface INFO:
stdout 2020-11-12T23:16:08.431202: 2DIAGNOSTIC, 94, -5.151869058609e-01, 3.384155036201e-07, 6.8838e+02, 4.5939e+00,
201112-23:16:13,27 nipype.interface INFO:
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201112-23:16:22,198 nipype.interface INFO:
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201112-23:16:26,785 nipype.interface INFO:
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201112-23:16:31,361 nipype.interface INFO:
stdout 2020-11-12T23:16:31.361348: 2DIAGNOSTIC, 99, -5.151869058609e-01, 3.213232275812e-07, 7.1131e+02, 4.5760e+00,
201112-23:16:35,943 nipype.interface INFO:
stdout 2020-11-12T23:16:35.943558: 2DIAGNOSTIC, 100, -5.151869058609e-01, 3.181098975347e-07, 7.1589e+02, 4.5818e+00,
201112-23:16:35,944 nipype.interface INFO:
stdout 2020-11-12T23:16:35.944008: Elapsed time (stage 0): 7.1892e+02
201112-23:16:35,944 nipype.interface INFO:
stdout 2020-11-12T23:16:35.944383:
201112-23:16:35,950 nipype.interface INFO:
stdout 2020-11-12T23:16:35.950492:
201112-23:16:35,950 nipype.interface INFO:
stdout 2020-11-12T23:16:35.950660:Stage 1
201112-23:16:35,950 nipype.interface INFO:
stdout 2020-11-12T23:16:35.950813: iterations = 1000x500x250x100
201112-23:16:35,950 nipype.interface INFO:
stdout 2020-11-12T23:16:35.950955: convergence threshold = 1.0000e-08
201112-23:16:35,951 nipype.interface INFO:
stdout 2020-11-12T23:16:35.951099: convergence window size = 10
201112-23:16:35,951 nipype.interface INFO:
stdout 2020-11-12T23:16:35.951231: number of levels = 4
201112-23:16:35,951 nipype.interface INFO:
stdout 2020-11-12T23:16:35.951391: using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00)
201112-23:16:38,481 nipype.interface INFO:
stdout 2020-11-12T23:16:38.481070: preprocessing: winsorizing the image intensities
201112-23:16:38,481 nipype.interface INFO:
stdout 2020-11-12T23:16:38.481070: preprocessing: histogram matching the images
201112-23:16:38,481 nipype.interface INFO:
stdout 2020-11-12T23:16:38.481541: Shrink factors (level 1 out of 4): [8, 8, 8]
201112-23:16:38,481 nipype.interface INFO:
stdout 2020-11-12T23:16:38.481684: Shrink factors (level 2 out of 4): [4, 4, 4]
201112-23:16:38,481 nipype.interface INFO:
stdout 2020-11-12T23:16:38.481819: Shrink factors (level 3 out of 4): [2, 2, 2]
201112-23:16:38,481 nipype.interface INFO:
stdout 2020-11-12T23:16:38.481950: Shrink factors (level 4 out of 4): [1, 1, 1]
201112-23:16:38,482 nipype.interface INFO:
stdout 2020-11-12T23:16:38.482109: smoothing sigmas per level: [4, 2, 1, 0]
201112-23:16:38,482 nipype.interface INFO:
stdout 2020-11-12T23:16:38.482251: regular sampling (percentage = 2.5000e-01)
201112-23:16:38,487 nipype.interface INFO:
stdout 2020-11-12T23:16:38.487191:
201112-23:16:38,487 nipype.interface INFO:
stdout 2020-11-12T23:16:38.487361:*** Running AffineTransform registration ***
201112-23:16:38,487 nipype.interface INFO:
stdout 2020-11-12T23:16:38.487502:
201112-23:16:50,130 nipype.interface INFO:
stdout 2020-11-12T23:16:50.130226:DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201112-23:16:50,130 nipype.interface INFO:
stdout 2020-11-12T23:16:50.130601: 2DIAGNOSTIC, 1, -9.621154069901e-01, inf, 1.1646e+01, 1.1646e+01,
201112-23:16:50,140 nipype.interface INFO:
stdout 2020-11-12T23:16:50.140640: 2DIAGNOSTIC, 2, -9.650106430054e-01, inf, 1.1655e+01, 9.8641e-03,
201112-23:16:50,150 nipype.interface INFO:
stdout 2020-11-12T23:16:50.150685: 2DIAGNOSTIC, 3, -9.693515300751e-01, inf, 1.1665e+01, 9.8650e-03,
201112-23:16:50,160 nipype.interface INFO:
stdout 2020-11-12T23:16:50.160717: 2DIAGNOSTIC, 4, -9.753015637398e-01, inf, 1.1675e+01, 9.8569e-03,
201112-23:16:50,170 nipype.interface INFO:
stdout 2020-11-12T23:16:50.170797: 2DIAGNOSTIC, 5, -9.820194244385e-01, inf, 1.1685e+01, 9.9049e-03,
201112-23:16:50,180 nipype.interface INFO:
stdout 2020-11-12T23:16:50.180837: 2DIAGNOSTIC, 6, -9.880694150925e-01, inf, 1.1695e+01, 9.8660e-03,
201112-23:16:50,190 nipype.interface INFO:
stdout 2020-11-12T23:16:50.190859: 2DIAGNOSTIC, 7, -9.928504228592e-01, inf, 1.1705e+01, 9.8481e-03,
201112-23:16:50,209 nipype.interface INFO:
stdout 2020-11-12T23:16:50.209793: 2DIAGNOSTIC, 8, -9.954149723053e-01, inf, 1.1724e+01, 1.8761e-02,
201112-23:16:50,219 nipype.interface INFO:
stdout 2020-11-12T23:16:50.219806: 2DIAGNOSTIC, 9, -9.956974983215e-01, inf, 1.1733e+01, 9.8350e-03,
201112-23:16:50,230 nipype.interface INFO:
stdout 2020-11-12T23:16:50.230068: 2DIAGNOSTIC, 10, -9.965557456017e-01, 2.570886397734e-03, 1.1743e+01, 1.0085e-02,
201112-23:16:50,240 nipype.interface INFO:
stdout 2020-11-12T23:16:50.240251: 2DIAGNOSTIC, 11, -9.970821142197e-01, 2.030851785094e-03, 1.1753e+01, 9.9959e-03,
201112-23:16:50,252 nipype.interface INFO:
stdout 2020-11-12T23:16:50.252159: 2DIAGNOSTIC, 12, -9.974263906479e-01, 1.476847915910e-03, 1.1765e+01, 1.1725e-02,
201112-23:16:50,276 nipype.interface INFO:
stdout 2020-11-12T23:16:50.276144: 2DIAGNOSTIC, 13, -9.977914094925e-01, 9.795117657632e-04, 1.1789e+01, 2.3803e-02,
201112-23:16:50,286 nipype.interface INFO:
stdout 2020-11-12T23:16:50.286320: 2DIAGNOSTIC, 14, -9.978005290031e-01, 5.868065054528e-04, 1.1799e+01, 9.9881e-03,
201112-23:16:50,296 nipype.interface INFO:
stdout 2020-11-12T23:16:50.296503: 2DIAGNOSTIC, 15, -9.978577494621e-01, 3.221371152904e-04, 1.1809e+01, 9.9950e-03,
201112-23:16:50,306 nipype.interface INFO:
stdout 2020-11-12T23:16:50.306698: 2DIAGNOSTIC, 16, -9.979423880577e-01, 1.698601990938e-04, 1.1819e+01, 1.0004e-02,
201112-23:16:50,316 nipype.interface INFO:
stdout 2020-11-12T23:16:50.316875: 2DIAGNOSTIC, 17, -9.980575442314e-01, 1.018910552375e-04, 1.1829e+01, 9.9890e-03,
201112-23:16:50,327 nipype.interface INFO:
stdout 2020-11-12T23:16:50.327410: 2DIAGNOSTIC, 18, -9.981837868690e-01, 7.529310823884e-05, 1.1839e+01, 1.0354e-02,
201112-23:16:50,337 nipype.interface INFO:
stdout 2020-11-12T23:16:50.337587: 2DIAGNOSTIC, 19, -9.983121752739e-01, 5.069088001619e-05, 1.1849e+01, 9.9862e-03,
201112-23:16:50,347 nipype.interface INFO:
stdout 2020-11-12T23:16:50.347754: 2DIAGNOSTIC, 20, -9.984350800514e-01, 3.800577542279e-05, 1.1859e+01, 9.9800e-03,
201112-23:16:50,357 nipype.interface INFO:
stdout 2020-11-12T23:16:50.357947: 2DIAGNOSTIC, 21, -9.985512495041e-01, 3.182834188920e-05, 1.1869e+01, 1.0007e-02,
201112-23:16:50,368 nipype.interface INFO:
stdout 2020-11-12T23:16:50.368150: 2DIAGNOSTIC, 22, -9.986937046051e-01, 2.957920696645e-05, 1.1879e+01, 1.0006e-02,
201112-23:16:50,383 nipype.interface INFO:
stdout 2020-11-12T23:16:50.383542: 2DIAGNOSTIC, 23, -9.988704919815e-01, 3.162738357787e-05, 1.1894e+01, 1.5209e-02,
201112-23:16:50,393 nipype.interface INFO:
stdout 2020-11-12T23:16:50.393722: 2DIAGNOSTIC, 24, -9.989253282547e-01, 3.139485852444e-05, 1.1904e+01, 9.9940e-03,
201112-23:16:50,409 nipype.interface INFO:
stdout 2020-11-12T23:16:50.409038: 2DIAGNOSTIC, 25, -9.990127682686e-01, 3.002764970006e-05, 1.1920e+01, 1.5129e-02,
201112-23:16:50,419 nipype.interface INFO:
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201112-23:16:50,429 nipype.interface INFO:
stdout 2020-11-12T23:16:50.429586: 2DIAGNOSTIC, 27, -9.991391301155e-01, 2.515726737329e-05, 1.1940e+01, 1.0190e-02,
201112-23:16:50,439 nipype.interface INFO:
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201112-23:16:50,450 nipype.interface INFO:
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201112-23:16:50,468 nipype.interface INFO:
stdout 2020-11-12T23:16:50.468966: 2DIAGNOSTIC, 30, -9.993772506714e-01, 1.692924524832e-05, 1.1979e+01, 1.8564e-02,
201112-23:16:50,479 nipype.interface INFO:
stdout 2020-11-12T23:16:50.479212: 2DIAGNOSTIC, 31, -9.994053840637e-01, 1.468472237320e-05, 1.1989e+01, 1.0040e-02,
201112-23:16:50,489 nipype.interface INFO:
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201112-23:16:50,499 nipype.interface INFO:
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201112-23:16:50,511 nipype.interface INFO:
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201112-23:16:50,526 nipype.interface INFO:
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201112-23:17:56,721 nipype.interface INFO:
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201112-23:17:56,721 nipype.interface INFO:
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201112-23:21:22,68 nipype.interface INFO:
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201112-23:21:31,667 nipype.interface INFO:
stdout 2020-11-12T23:21:31.666996:DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201112-23:21:31,667 nipype.interface INFO:
stdout 2020-11-12T23:21:31.667555: 2DIAGNOSTIC, 1, -5.375542640686e-01, inf, 2.9279e+02, 7.9514e+00,
201112-23:21:36,356 nipype.interface INFO:
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201112-23:21:41,57 nipype.interface INFO:
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201112-23:21:45,747 nipype.interface INFO:
stdout 2020-11-12T23:21:45.747664: 2DIAGNOSTIC, 4, -5.381609201431e-01, inf, 3.0687e+02, 4.6895e+00,
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201112-23:22:28,103 nipype.interface INFO:
stdout 2020-11-12T23:22:28.103300: 2DIAGNOSTIC, 11, -5.383818745613e-01, 5.339903873391e-05, 3.4922e+02, 5.4799e+00,
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201112-23:22:38,270 nipype.interface INFO:
stdout 2020-11-12T23:22:38.270875: 2DIAGNOSTIC, 13, -5.383819341660e-01, 1.973956750589e-05, 3.5939e+02, 4.6895e+00,
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stdout 2020-11-12T23:22:43.760254: 2DIAGNOSTIC, 14, -5.383828878403e-01, 1.234112187376e-05, 3.6488e+02, 5.4890e+00,
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201112-23:22:57,821 nipype.interface INFO:
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201112-23:23:25,222 nipype.interface INFO:
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201112-23:25:46,968 nipype.interface INFO:
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201112-23:26:03,410 nipype.interface INFO:
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201112-23:26:48,42 nipype.interface INFO:
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201112-23:27:03,459 nipype.interface INFO:
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stdout 2020-11-12T23:28:21.392377: 2DIAGNOSTIC, 75, -5.385584831238e-01, 4.256273200554e-07, 7.0248e+02, 5.3924e+00,
201112-23:28:26,801 nipype.interface INFO:
stdout 2020-11-12T23:28:26.801668: 2DIAGNOSTIC, 76, -5.385584235191e-01, 4.197788427973e-07, 7.0789e+02, 5.4089e+00,
201112-23:28:32,195 nipype.interface INFO:
stdout 2020-11-12T23:28:32.195052: 2DIAGNOSTIC, 77, -5.385585427284e-01, 4.156442230396e-07, 7.1328e+02, 5.3928e+00,
201112-23:28:37,588 nipype.interface INFO:
stdout 2020-11-12T23:28:37.588176: 2DIAGNOSTIC, 78, -5.385583639145e-01, 4.081420854618e-07, 7.1867e+02, 5.3927e+00,
201112-23:28:42,999 nipype.interface INFO:
stdout 2020-11-12T23:28:42.999289: 2DIAGNOSTIC, 79, -5.385584235191e-01, 4.016936543394e-07, 7.2408e+02, 5.4107e+00,
201112-23:28:48,394 nipype.interface INFO:
stdout 2020-11-12T23:28:48.394500: 2DIAGNOSTIC, 80, -5.385581851006e-01, 3.934849814868e-07, 7.2948e+02, 5.3946e+00,
201112-23:28:53,793 nipype.interface INFO:
stdout 2020-11-12T23:28:53.793778: 2DIAGNOSTIC, 81, -5.385583043098e-01, 3.882164207880e-07, 7.3488e+02, 5.3989e+00,
201112-23:28:59,187 nipype.interface INFO:
stdout 2020-11-12T23:28:59.187427: 2DIAGNOSTIC, 82, -5.385583639145e-01, 3.842344256100e-07, 7.4027e+02, 5.3933e+00,
201112-23:29:04,579 nipype.interface INFO:
stdout 2020-11-12T23:29:04.579155: 2DIAGNOSTIC, 83, -5.385583639145e-01, 3.807295172464e-07, 7.4566e+02, 5.3913e+00,
201112-23:29:09,984 nipype.interface INFO:
stdout 2020-11-12T23:29:09.984686: 2DIAGNOSTIC, 84, -5.385583043098e-01, 3.760758602311e-07, 7.5107e+02, 5.4051e+00,
201112-23:29:15,384 nipype.interface INFO:
stdout 2020-11-12T23:29:15.384390: 2DIAGNOSTIC, 85, -5.385583639145e-01, 3.725680812749e-07, 7.5647e+02, 5.3993e+00,
201112-23:29:20,785 nipype.interface INFO:
stdout 2020-11-12T23:29:20.785364: 2DIAGNOSTIC, 86, -5.385584831238e-01, 3.696219721405e-07, 7.6187e+02, 5.4004e+00,
201112-23:29:26,181 nipype.interface INFO:
stdout 2020-11-12T23:29:26.181809: 2DIAGNOSTIC, 87, -5.385583639145e-01, 3.667541932373e-07, 7.6726e+02, 5.3961e+00,
201112-23:29:31,582 nipype.interface INFO:
stdout 2020-11-12T23:29:31.582066: 2DIAGNOSTIC, 88, -5.385583043098e-01, 3.624365092492e-07, 7.7266e+02, 5.3998e+00,
201112-23:29:36,992 nipype.interface INFO:
stdout 2020-11-12T23:29:36.992193: 2DIAGNOSTIC, 89, -5.385583043098e-01, 3.585533079331e-07, 7.7807e+02, 5.4097e+00,
201112-23:29:42,396 nipype.interface INFO:
stdout 2020-11-12T23:29:42.396241: 2DIAGNOSTIC, 90, -5.385581851006e-01, 3.525146041738e-07, 7.8348e+02, 5.4037e+00,
201112-23:29:47,806 nipype.interface INFO:
stdout 2020-11-12T23:29:47.805930: 2DIAGNOSTIC, 91, -5.385581254959e-01, 3.470365470548e-07, 7.8889e+02, 5.4093e+00,
201112-23:29:53,203 nipype.interface INFO:
stdout 2020-11-12T23:29:53.203223: 2DIAGNOSTIC, 92, -5.385582447052e-01, 3.429647108533e-07, 7.9428e+02, 5.3968e+00,
201112-23:29:58,602 nipype.interface INFO:
stdout 2020-11-12T23:29:58.602077: 2DIAGNOSTIC, 93, -5.385583043098e-01, 3.395917076432e-07, 7.9968e+02, 5.3984e+00,
201112-23:30:04,34 nipype.interface INFO:
stdout 2020-11-12T23:30:04.034798: 2DIAGNOSTIC, 94, -5.385581851006e-01, 3.355118280979e-07, 8.0511e+02, 5.4323e+00,
201112-23:30:09,527 nipype.interface INFO:
stdout 2020-11-12T23:30:09.527117: 2DIAGNOSTIC, 95, -5.385581851006e-01, 3.321463566408e-07, 8.1060e+02, 5.4919e+00,
201112-23:30:14,938 nipype.interface INFO:
stdout 2020-11-12T23:30:14.938572: 2DIAGNOSTIC, 96, -5.385581851006e-01, 3.297887474218e-07, 8.1602e+02, 5.4111e+00,
201112-23:30:20,345 nipype.interface INFO:
stdout 2020-11-12T23:30:20.345748: 2DIAGNOSTIC, 97, -5.385582447052e-01, 3.272876654137e-07, 8.2142e+02, 5.4068e+00,
201112-23:30:25,766 nipype.interface INFO:
stdout 2020-11-12T23:30:25.766655: 2DIAGNOSTIC, 98, -5.385583043098e-01, 3.248764528507e-07, 8.2684e+02, 5.4188e+00,
201112-23:30:31,167 nipype.interface INFO:
stdout 2020-11-12T23:30:31.167368: 2DIAGNOSTIC, 99, -5.385583639145e-01, 3.228365414998e-07, 8.3224e+02, 5.4002e+00,
201112-23:30:36,568 nipype.interface INFO:
stdout 2020-11-12T23:30:36.568347: 2DIAGNOSTIC, 100, -5.385583043098e-01, 3.197735054528e-07, 8.3764e+02, 5.4006e+00,
201112-23:30:36,568 nipype.interface INFO:
stdout 2020-11-12T23:30:36.568764: Elapsed time (stage 1): 8.4062e+02
201112-23:30:36,568 nipype.interface INFO:
stdout 2020-11-12T23:30:36.568913:
201112-23:30:36,573 nipype.interface INFO:
stdout 2020-11-12T23:30:36.573872:
201112-23:30:36,574 nipype.interface INFO:
stdout 2020-11-12T23:30:36.574042:Stage 2
201112-23:30:36,574 nipype.interface INFO:
stdout 2020-11-12T23:30:36.574189: iterations = 50x10x0
201112-23:30:36,574 nipype.interface INFO:
stdout 2020-11-12T23:30:36.574329: convergence threshold = 1.0000e-09
201112-23:30:36,574 nipype.interface INFO:
stdout 2020-11-12T23:30:36.574459: convergence window size = 15
201112-23:30:36,574 nipype.interface INFO:
stdout 2020-11-12T23:30:36.574587: number of levels = 3
201112-23:30:36,574 nipype.interface INFO:
stdout 2020-11-12T23:30:36.574747: using the CC metric (radius = 4, weight = 5.0000e-01)
201112-23:30:39,117 nipype.interface INFO:
stdout 2020-11-12T23:30:39.117428: preprocessing: winsorizing the image intensities
201112-23:30:39,117 nipype.interface INFO:
stdout 2020-11-12T23:30:39.117428: preprocessing: histogram matching the images
201112-23:30:39,117 nipype.interface INFO:
stdout 2020-11-12T23:30:39.117913: using the CC metric (radius = 4, weight = 5.0000e-01)
201112-23:30:41,554 nipype.interface INFO:
stdout 2020-11-12T23:30:41.554841: preprocessing: winsorizing the image intensities
201112-23:30:41,555 nipype.interface INFO:
stdout 2020-11-12T23:30:41.554841: preprocessing: histogram matching the images
201112-23:30:41,555 nipype.interface INFO:
stdout 2020-11-12T23:30:41.555310: Shrink factors (level 1 out of 3): [4, 4, 4]
201112-23:30:41,555 nipype.interface INFO:
stdout 2020-11-12T23:30:41.555452: Shrink factors (level 2 out of 3): [2, 2, 2]
201112-23:30:41,555 nipype.interface INFO:
stdout 2020-11-12T23:30:41.555586: Shrink factors (level 3 out of 3): [1, 1, 1]
201112-23:30:41,555 nipype.interface INFO:
stdout 2020-11-12T23:30:41.555722: smoothing sigmas per level: [2, 1, 0]
201112-23:30:41,555 nipype.interface INFO:
stdout 2020-11-12T23:30:41.555849: Using default NONE metricSamplingStrategy
201112-23:30:41,690 nipype.interface INFO:
stdout 2020-11-12T23:30:41.690761:
201112-23:30:41,691 nipype.interface INFO:
stdout 2020-11-12T23:30:41.691112:*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) ***
201112-23:30:41,691 nipype.interface INFO:
stdout 2020-11-12T23:30:41.691257:
201112-23:31:08,415 nipype.interface INFO:
stdout 2020-11-12T23:31:08.415452:XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201112-23:31:08,416 nipype.interface INFO:
stdout 2020-11-12T23:31:08.415996: 1DIAGNOSTIC, 1, -6.158227920532e-01, inf, 2.6725e+01, 2.6725e+01,
201112-23:31:26,614 nipype.interface INFO:
stdout 2020-11-12T23:31:26.614237: 1DIAGNOSTIC, 2, -6.325982809067e-01, inf, 4.4923e+01, 1.8198e+01,
201112-23:31:44,940 nipype.interface INFO:
stdout 2020-11-12T23:31:44.940221: 1DIAGNOSTIC, 3, -6.498614549637e-01, inf, 6.3249e+01, 1.8326e+01,
201112-23:32:03,129 nipype.interface INFO:
stdout 2020-11-12T23:32:03.129920: 1DIAGNOSTIC, 4, -6.643674373627e-01, inf, 8.1438e+01, 1.8189e+01,
201112-23:32:21,403 nipype.interface INFO:
stdout 2020-11-12T23:32:21.403568: 1DIAGNOSTIC, 5, -6.754292845726e-01, inf, 9.9711e+01, 1.8273e+01,
201112-23:32:39,602 nipype.interface INFO:
stdout 2020-11-12T23:32:39.602806: 1DIAGNOSTIC, 6, -6.872968077660e-01, inf, 1.1791e+02, 1.8199e+01,
201112-23:32:57,858 nipype.interface INFO:
stdout 2020-11-12T23:32:57.858415: 1DIAGNOSTIC, 7, -6.961809396744e-01, inf, 1.3616e+02, 1.8255e+01,
201112-23:33:16,52 nipype.interface INFO:
stdout 2020-11-12T23:33:16.052195: 1DIAGNOSTIC, 8, -7.054923176765e-01, inf, 1.5436e+02, 1.8193e+01,
201112-23:33:34,258 nipype.interface INFO:
stdout 2020-11-12T23:33:34.258268: 1DIAGNOSTIC, 9, -7.134516239166e-01, inf, 1.7256e+02, 1.8206e+01,
201112-23:33:52,476 nipype.interface INFO:
stdout 2020-11-12T23:33:52.476151: 1DIAGNOSTIC, 10, -7.214990258217e-01, inf, 1.9078e+02, 1.8217e+01,
201112-23:34:10,713 nipype.interface INFO:
stdout 2020-11-12T23:34:10.713105: 1DIAGNOSTIC, 11, -7.284575700760e-01, inf, 2.0902e+02, 1.8236e+01,
201112-23:34:28,910 nipype.interface INFO:
stdout 2020-11-12T23:34:28.910334: 1DIAGNOSTIC, 12, -7.347652912140e-01, inf, 2.2721e+02, 1.8197e+01,
201112-23:34:47,160 nipype.interface INFO:
stdout 2020-11-12T23:34:47.160037: 1DIAGNOSTIC, 13, -7.404466271400e-01, inf, 2.4546e+02, 1.8249e+01,
201112-23:35:05,408 nipype.interface INFO:
stdout 2020-11-12T23:35:05.408240: 1DIAGNOSTIC, 14, -7.456599473953e-01, inf, 2.6371e+02, 1.8248e+01,
201112-23:35:23,611 nipype.interface INFO:
stdout 2020-11-12T23:35:23.611742: 1DIAGNOSTIC, 15, -7.502432465553e-01, 7.615778595209e-03, 2.8191e+02, 1.8203e+01,
201112-23:35:41,894 nipype.interface INFO:
stdout 2020-11-12T23:35:41.894740: 1DIAGNOSTIC, 16, -7.542108297348e-01, 6.409266963601e-03, 3.0020e+02, 1.8282e+01,
201112-23:36:00,127 nipype.interface INFO:
stdout 2020-11-12T23:36:00.127116: 1DIAGNOSTIC, 17, -7.579148411751e-01, 5.411574617028e-03, 3.1843e+02, 1.8232e+01,
201112-23:36:18,383 nipype.interface INFO:
stdout 2020-11-12T23:36:18.383199: 1DIAGNOSTIC, 18, -7.610749602318e-01, 4.611565265805e-03, 3.3668e+02, 1.8256e+01,
201112-23:36:36,640 nipype.interface INFO:
stdout 2020-11-12T23:36:36.640324: 1DIAGNOSTIC, 19, -7.638936042786e-01, 3.953264094889e-03, 3.5494e+02, 1.8257e+01,
201112-23:36:54,928 nipype.interface INFO:
stdout 2020-11-12T23:36:54.928130: 1DIAGNOSTIC, 20, -7.665029764175e-01, 3.381326328963e-03, 3.7323e+02, 1.8287e+01,
201112-23:37:13,183 nipype.interface INFO:
stdout 2020-11-12T23:37:13.183225: 1DIAGNOSTIC, 21, -7.689463496208e-01, 2.907136920840e-03, 3.9148e+02, 1.8255e+01,
201112-23:37:31,491 nipype.interface INFO:
stdout 2020-11-12T23:37:31.491413: 1DIAGNOSTIC, 22, -7.708765268326e-01, 2.486373763531e-03, 4.0979e+02, 1.8308e+01,
201112-23:37:50,87 nipype.interface INFO:
stdout 2020-11-12T23:37:50.087305: 1DIAGNOSTIC, 23, -7.730529308319e-01, 2.131687942892e-03, 4.2839e+02, 1.8595e+01,
201112-23:38:08,382 nipype.interface INFO:
stdout 2020-11-12T23:38:08.382341: 1DIAGNOSTIC, 24, -7.748201489449e-01, 1.824674778618e-03, 4.4668e+02, 1.8294e+01,
201112-23:38:26,732 nipype.interface INFO:
stdout 2020-11-12T23:38:26.732320: 1DIAGNOSTIC, 25, -7.763632535934e-01, 1.567166531458e-03, 4.6503e+02, 1.8349e+01,
201112-23:38:45,87 nipype.interface INFO:
stdout 2020-11-12T23:38:45.086963: 1DIAGNOSTIC, 26, -7.777885198593e-01, 1.348583726212e-03, 4.8338e+02, 1.8354e+01,
201112-23:39:03,353 nipype.interface INFO:
stdout 2020-11-12T23:39:03.353254: 1DIAGNOSTIC, 27, -7.793061733246e-01, 1.165530644357e-03, 5.0165e+02, 1.8266e+01,
201112-23:39:21,750 nipype.interface INFO:
stdout 2020-11-12T23:39:21.750724: 1DIAGNOSTIC, 28, -7.805833816528e-01, 1.011341228150e-03, 5.2005e+02, 1.8397e+01,
201112-23:39:40,57 nipype.interface INFO:
stdout 2020-11-12T23:39:40.057318: 1DIAGNOSTIC, 29, -7.817773222923e-01, 8.826743578538e-04, 5.3835e+02, 1.8306e+01,
201112-23:39:58,350 nipype.interface INFO:
stdout 2020-11-12T23:39:58.350805: 1DIAGNOSTIC, 30, -7.828181982040e-01, 7.739961147308e-04, 5.5665e+02, 1.8293e+01,
201112-23:40:16,739 nipype.interface INFO:
stdout 2020-11-12T23:40:16.739656: 1DIAGNOSTIC, 31, -7.837922573090e-01, 6.808702601120e-04, 5.7503e+02, 1.8387e+01,
201112-23:40:35,41 nipype.interface INFO:
stdout 2020-11-12T23:40:35.041590: 1DIAGNOSTIC, 32, -7.846773266792e-01, 6.018485291861e-04, 5.9333e+02, 1.8301e+01,
201112-23:40:53,344 nipype.interface INFO:
stdout 2020-11-12T23:40:53.344556: 1DIAGNOSTIC, 33, -7.854976654053e-01, 5.332301370800e-04, 6.1164e+02, 1.8303e+01,
201112-23:41:11,665 nipype.interface INFO:
stdout 2020-11-12T23:41:11.665292: 1DIAGNOSTIC, 34, -7.862844467163e-01, 4.732985689770e-04, 6.2996e+02, 1.8320e+01,
201112-23:41:29,953 nipype.interface INFO:
stdout 2020-11-12T23:41:29.953597: 1DIAGNOSTIC, 35, -7.869875431061e-01, 4.209686594550e-04, 6.4824e+02, 1.8288e+01,
201112-23:41:48,335 nipype.interface INFO:
stdout 2020-11-12T23:41:48.335047: 1DIAGNOSTIC, 36, -7.876331806183e-01, 3.756632213481e-04, 6.6663e+02, 1.8381e+01,
201112-23:42:06,678 nipype.interface INFO:
stdout 2020-11-12T23:42:06.678417: 1DIAGNOSTIC, 37, -7.882790565491e-01, 3.345553705003e-04, 6.8497e+02, 1.8343e+01,
201112-23:42:24,993 nipype.interface INFO:
stdout 2020-11-12T23:42:24.993730: 1DIAGNOSTIC, 38, -7.888962030411e-01, 3.001728327945e-04, 7.0328e+02, 1.8315e+01,
201112-23:42:43,484 nipype.interface INFO:
stdout 2020-11-12T23:42:43.484192: 1DIAGNOSTIC, 39, -7.894823551178e-01, 2.701607591007e-04, 7.2177e+02, 1.8490e+01,
201112-23:43:01,847 nipype.interface INFO:
stdout 2020-11-12T23:43:01.846926: 1DIAGNOSTIC, 40, -7.899858951569e-01, 2.431301545585e-04, 7.4014e+02, 1.8362e+01,
201112-23:43:20,172 nipype.interface INFO:
stdout 2020-11-12T23:43:20.172489: 1DIAGNOSTIC, 41, -7.904589772224e-01, 2.187630889239e-04, 7.5846e+02, 1.8325e+01,
201112-23:43:38,506 nipype.interface INFO:
stdout 2020-11-12T23:43:38.506799: 1DIAGNOSTIC, 42, -7.909250855446e-01, 1.982077665161e-04, 7.7679e+02, 1.8334e+01,
201112-23:43:56,831 nipype.interface INFO:
stdout 2020-11-12T23:43:56.831257: 1DIAGNOSTIC, 43, -7.912226915359e-01, 1.793969568098e-04, 7.9512e+02, 1.8324e+01,
201112-23:44:15,188 nipype.interface INFO:
stdout 2020-11-12T23:44:15.188639: 1DIAGNOSTIC, 44, -7.915563583374e-01, 1.625777658774e-04, 8.1348e+02, 1.8357e+01,
201112-23:44:33,567 nipype.interface INFO:
stdout 2020-11-12T23:44:33.567414: 1DIAGNOSTIC, 45, -7.918921113014e-01, 1.472907460993e-04, 8.3185e+02, 1.8378e+01,
201112-23:44:51,967 nipype.interface INFO:
stdout 2020-11-12T23:44:51.967577: 1DIAGNOSTIC, 46, -7.922037839890e-01, 1.334189582849e-04, 8.5025e+02, 1.8400e+01,
201112-23:45:10,461 nipype.interface INFO:
stdout 2020-11-12T23:45:10.461695: 1DIAGNOSTIC, 47, -7.925137281418e-01, 1.208290559589e-04, 8.6875e+02, 1.8494e+01,
201112-23:45:28,774 nipype.interface INFO:
stdout 2020-11-12T23:45:28.774578: 1DIAGNOSTIC, 48, -7.927836179733e-01, 1.092980674002e-04, 8.8706e+02, 1.8312e+01,
201112-23:45:47,106 nipype.interface INFO:
stdout 2020-11-12T23:45:47.106171: 1DIAGNOSTIC, 49, -7.929250001907e-01, 9.831842908170e-05, 9.0539e+02, 1.8331e+01,
201112-23:46:05,416 nipype.interface INFO:
stdout 2020-11-12T23:46:05.415961: 1DIAGNOSTIC, 50, -7.931074500084e-01, 8.804058597889e-05, 9.2370e+02, 1.8309e+01,
201112-23:48:32,59 nipype.interface INFO:
stdout 2020-11-12T23:48:32.059263:XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201112-23:48:32,59 nipype.interface INFO:
stdout 2020-11-12T23:48:32.059793: 1DIAGNOSTIC, 1, -6.079812049866e-01, inf, 1.0703e+03, 1.4664e+02,
201112-23:50:54,950 nipype.interface INFO:
stdout 2020-11-12T23:50:54.950100: 1DIAGNOSTIC, 2, -6.121698617935e-01, inf, 1.2132e+03, 1.4289e+02,
201112-23:53:17,927 nipype.interface INFO:
stdout 2020-11-12T23:53:17.927748: 1DIAGNOSTIC, 3, -6.173560023308e-01, inf, 1.3562e+03, 1.4298e+02,
201112-23:55:41,13 nipype.interface INFO:
stdout 2020-11-12T23:55:41.012896: 1DIAGNOSTIC, 4, -6.221979856491e-01, inf, 1.4993e+03, 1.4308e+02,
201112-23:58:03,371 nipype.interface INFO:
stdout 2020-11-12T23:58:03.371384: 1DIAGNOSTIC, 5, -6.260957717896e-01, inf, 1.6417e+03, 1.4236e+02,
201113-00:00:25,689 nipype.interface INFO:
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201113-00:02:48,193 nipype.interface INFO:
stdout 2020-11-13T00:02:48.193460: 1DIAGNOSTIC, 7, -6.327312588692e-01, inf, 1.9265e+03, 1.4250e+02,
201113-00:05:10,538 nipype.interface INFO:
stdout 2020-11-13T00:05:10.538278: 1DIAGNOSTIC, 8, -6.355625391006e-01, inf, 2.0688e+03, 1.4234e+02,
201113-00:07:32,889 nipype.interface INFO:
stdout 2020-11-13T00:07:32.889500: 1DIAGNOSTIC, 9, -6.381272673607e-01, inf, 2.2112e+03, 1.4235e+02,
201113-00:09:55,327 nipype.interface INFO:
stdout 2020-11-13T00:09:55.327023: 1DIAGNOSTIC, 10, -6.405304670334e-01, inf, 2.3536e+03, 1.4244e+02,
201113-00:10:16,8 nipype.interface INFO:
stdout 2020-11-13T00:10:16.008835: Elapsed time (stage 2): 2379
201113-00:10:16,9 nipype.interface INFO:
stdout 2020-11-13T00:10:16.009349:
201113-00:10:16,16 nipype.interface INFO:
stdout 2020-11-13T00:10:16.016162:
201113-00:10:16,16 nipype.interface INFO:
stdout 2020-11-13T00:10:16.016325:Total elapsed time: 3939
201113-00:11:58,21 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.norm".
201113-00:11:58,34 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.map_brainmask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/map_brainmask".
201113-00:11:58,53 nipype.workflow INFO:
[Node] Running "map_brainmask" ("CPAC.utils.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 1 --input /ants_template/oasis/T_template0_BrainCerebellumProbabilityMask.nii.gz --interpolation Gaussian --output T_template0_BrainCerebellumProbabilityMask_trans.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-071_ses-1_T1w_resample.nii.gz --transform [ /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/norm/anat_to_template0GenericAffine.mat, 1 ] --transform [ /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/norm/anat_to_template1InverseWarp.nii.gz, 0 ]
201113-00:12:30,90 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.map_brainmask".
201113-00:12:30,93 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.thr_brainmask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/thr_brainmask".
201113-00:12:30,98 nipype.workflow INFO:
[Node] Running "thr_brainmask" ("CPAC.utils.interfaces.ants.ThresholdImage"), a CommandLine Interface with command:
ThresholdImage 3 /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/map_brainmask/T_template0_BrainCerebellumProbabilityMask_trans.nii.gz T_template0_BrainCerebellumProbabilityMask_trans_resampled.nii.gz 0.500000 1.000000 1.000000 0.000000
201113-00:12:30,547 nipype.interface INFO:
stderr 2020-11-13T00:12:30.547687: file 1.000000 does not exist .
201113-00:12:31,4 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.thr_brainmask".
201113-00:12:31,6 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.03_pad_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/03_pad_mask".
201113-00:12:31,11 nipype.workflow INFO:
[Node] Running "03_pad_mask" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 T_template0_BrainCerebellumProbabilityMask_trans_resampled_maths.nii.gz PadImage /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/thr_brainmask/T_template0_BrainCerebellumProbabilityMask_trans_resampled.nii.gz 10
201113-00:12:32,225 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.03_pad_mask".
201113-00:12:32,229 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.dil_brainmask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/dil_brainmask".
201113-00:12:32,235 nipype.workflow INFO:
[Node] Running "dil_brainmask" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 T_template0_BrainCerebellumProbabilityMask_trans_resampled_maths.nii.gz MD /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/thr_brainmask/T_template0_BrainCerebellumProbabilityMask_trans_resampled.nii.gz 2
201113-00:12:33,843 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.dil_brainmask".
201113-00:12:33,845 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.get_brainmask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/get_brainmask".
201113-00:12:33,850 nipype.workflow INFO:
[Node] Running "get_brainmask" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 T_template0_BrainCerebellumProbabilityMask_trans_resampled_maths_maths.nii.gz GetLargestComponent /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/dil_brainmask/T_template0_BrainCerebellumProbabilityMask_trans_resampled_maths.nii.gz
201113-00:12:35,298 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.get_brainmask".
201113-00:12:35,300 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.01_atropos" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/01_atropos".
201113-00:12:35,308 nipype.workflow INFO:
[Node] Running "01_atropos" ("nipype.interfaces.ants.segmentation.Atropos"), a CommandLine Interface with command:
Atropos --image-dimensionality 3 --initialization KMeans[3] --intensity-image /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-071_ses-1_T1w_resample_maths_corrected.nii.gz --likelihood-model Gaussian --mask-image /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/get_brainmask/T_template0_BrainCerebellumProbabilityMask_trans_resampled_maths_maths.nii.gz --mrf [0.1,1x1x1] --convergence [3,0] --output [sub-071_ses-1_T1w_resample_maths_corrected_labeled.nii.gz] --use-random-seed 1
201113-00:13:19,382 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.01_atropos".
201113-00:13:19,384 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.02_pad_segm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/02_pad_segm".
201113-00:13:19,389 nipype.workflow INFO:
[Node] Running "02_pad_segm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-071_ses-1_T1w_resample_maths_corrected_labeled_maths.nii.gz PadImage /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/01_atropos/sub-071_ses-1_T1w_resample_maths_corrected_labeled.nii.gz 10
201113-00:13:20,753 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.02_pad_segm".
201113-00:13:20,755 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.04_sel_labels" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/04_sel_labels".
201113-00:13:20,759 nipype.workflow INFO:
[Node] Running "04_sel_labels" ("nipype.interfaces.utility.wrappers.Function")
201113-00:13:21,409 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.04_sel_labels".
201113-00:13:21,411 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.27_depad_csf" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/27_depad_csf".
201113-00:13:21,417 nipype.workflow INFO:
[Node] Running "27_depad_csf" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-071_ses-1_T1w_resample_maths_corrected_labeled_maths_class-01_maths.nii.gz PadImage /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/04_sel_labels/sub-071_ses-1_T1w_resample_maths_corrected_labeled_maths_class-01.nii.gz -10
201113-00:13:22,533 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.27_depad_csf".
201113-00:13:22,535 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.10_me_csf" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/10_me_csf".
201113-00:13:22,540 nipype.workflow INFO:
[Node] Running "10_me_csf" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-071_ses-1_T1w_resample_maths_corrected_labeled_maths_class-01_maths.nii.gz ME /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/04_sel_labels/sub-071_ses-1_T1w_resample_maths_corrected_labeled_maths_class-01.nii.gz 10
201113-00:13:27,648 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.10_me_csf".
201113-00:13:27,650 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.06_get_gm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/06_get_gm".
201113-00:13:27,655 nipype.workflow INFO:
[Node] Running "06_get_gm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-071_ses-1_T1w_resample_maths_corrected_labeled_maths_class-02_maths.nii.gz GetLargestComponent /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/04_sel_labels/sub-071_ses-1_T1w_resample_maths_corrected_labeled_maths_class-02.nii.gz
201113-00:13:29,357 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.06_get_gm".
201113-00:13:29,358 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.07_fill_gm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/07_fill_gm".
201113-00:13:29,364 nipype.workflow INFO:
[Node] Running "07_fill_gm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-071_ses-1_T1w_resample_maths_corrected_labeled_maths_class-02_maths_maths.nii.gz FillHoles /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/06_get_gm/sub-071_ses-1_T1w_resample_maths_corrected_labeled_maths_class-02_maths.nii.gz 2
201113-00:13:39,189 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.07_fill_gm".
201113-00:13:39,191 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.08_mult_gm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/08_mult_gm".
201113-00:13:39,197 nipype.workflow INFO:
[Node] Running "08_mult_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command:
MultiplyImages 3 /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/06_get_gm/sub-071_ses-1_T1w_resample_maths_corrected_labeled_maths_class-02_maths.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/07_fill_gm/sub-071_ses-1_T1w_resample_maths_corrected_labeled_maths_class-02_maths_maths.nii.gz 08_mult_gm.nii.gz
201113-00:13:40,616 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.08_mult_gm".
201113-00:13:40,617 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.11_add_gm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/11_add_gm".
201113-00:13:40,623 nipype.workflow INFO:
[Node] Running "11_add_gm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 08_mult_gm_maths.nii.gz addtozero /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/08_mult_gm/08_mult_gm.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/10_me_csf/sub-071_ses-1_T1w_resample_maths_corrected_labeled_maths_class-01_maths.nii.gz
201113-00:13:44,544 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.11_add_gm".
201113-00:13:44,546 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.12_relabel_gm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/12_relabel_gm".
201113-00:13:44,551 nipype.workflow INFO:
[Node] Running "12_relabel_gm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command:
MultiplyImages 3 /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/11_add_gm/08_mult_gm_maths.nii.gz 2.0 12_relabel_gm.nii.gz
201113-00:13:45,672 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.12_relabel_gm".
201113-00:13:45,673 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.25_depad_gm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/25_depad_gm".
201113-00:13:45,679 nipype.workflow INFO:
[Node] Running "25_depad_gm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 12_relabel_gm_maths.nii.gz PadImage /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz -10
201113-00:13:47,48 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.25_depad_gm".
201113-00:13:47,49 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.05_get_wm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/05_get_wm".
201113-00:13:47,55 nipype.workflow INFO:
[Node] Running "05_get_wm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-071_ses-1_T1w_resample_maths_corrected_labeled_maths_class-03_maths.nii.gz GetLargestComponent /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/04_sel_labels/sub-071_ses-1_T1w_resample_maths_corrected_labeled_maths_class-03.nii.gz
201113-00:13:48,675 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.05_get_wm".
201113-00:13:48,676 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.09_relabel_wm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/09_relabel_wm".
201113-00:13:48,681 nipype.workflow INFO:
[Node] Running "09_relabel_wm" ("nipype.interfaces.ants.utils.MultiplyImages"), a CommandLine Interface with command:
MultiplyImages 3 /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/05_get_wm/sub-071_ses-1_T1w_resample_maths_corrected_labeled_maths_class-03_maths.nii.gz 3.0 09_relabel_wm.nii.gz
201113-00:13:49,753 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.09_relabel_wm".
201113-00:13:49,755 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.26_depad_wm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/26_depad_wm".
201113-00:13:49,760 nipype.workflow INFO:
[Node] Running "26_depad_wm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths.nii.gz PadImage /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz -10
201113-00:13:51,90 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.26_depad_wm".
201113-00:13:51,92 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.merge_tpms" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/merge_tpms".
201113-00:13:51,98 nipype.workflow INFO:
[Node] Running "merge_tpms" ("nipype.interfaces.utility.base.Merge")
201113-00:13:51,328 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.merge_tpms".
201113-00:13:51,329 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.13_add_gm_wm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/13_add_gm_wm".
201113-00:13:51,335 nipype.workflow INFO:
[Node] Running "13_add_gm_wm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths.nii.gz addtozero /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/09_relabel_wm/09_relabel_wm.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/12_relabel_gm/12_relabel_gm.nii.gz
201113-00:13:55,259 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.13_add_gm_wm".
201113-00:13:55,261 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.24_depad_segm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/24_depad_segm".
201113-00:13:55,266 nipype.workflow INFO:
[Node] Running "24_depad_segm" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_maths.nii.gz PadImage /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/13_add_gm_wm/09_relabel_wm_maths.nii.gz -10
201113-00:13:56,626 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.24_depad_segm".
201113-00:13:56,628 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.14_sel_labels2" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/14_sel_labels2".
201113-00:13:56,632 nipype.workflow INFO:
[Node] Running "14_sel_labels2" ("nipype.interfaces.utility.wrappers.Function")
201113-00:13:57,224 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.14_sel_labels2".
201113-00:13:57,225 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.15_add_7" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/15_add_7".
201113-00:13:57,231 nipype.workflow INFO:
[Node] Running "15_add_7" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths.nii.gz addtozero /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-03.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/14_sel_labels2/09_relabel_wm_maths_class-02.nii.gz
201113-00:14:00,842 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.15_add_7".
201113-00:14:00,844 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.16_me_7" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/16_me_7".
201113-00:14:00,849 nipype.workflow INFO:
[Node] Running "16_me_7" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths.nii.gz ME /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/15_add_7/09_relabel_wm_maths_class-03_maths.nii.gz 2
201113-00:14:04,198 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.16_me_7".
201113-00:14:04,200 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.17_comp_7" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/17_comp_7".
201113-00:14:04,206 nipype.workflow INFO:
[Node] Running "17_comp_7" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz GetLargestComponent /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/16_me_7/09_relabel_wm_maths_class-03_maths_maths.nii.gz
201113-00:14:05,993 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.17_comp_7".
201113-00:14:05,995 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.18_md_7" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/18_md_7".
201113-00:14:05,999 nipype.workflow INFO:
[Node] Running "18_md_7" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz MD /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/17_comp_7/09_relabel_wm_maths_class-03_maths_maths_maths.nii.gz 4
201113-00:14:08,26 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.18_md_7".
201113-00:14:08,27 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.19_fill_7" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/19_fill_7".
201113-00:14:08,32 nipype.workflow INFO:
[Node] Running "19_fill_7" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz FillHoles /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/18_md_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths.nii.gz 2
201113-00:14:17,247 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.19_fill_7".
201113-00:14:17,248 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.20_add_7_2" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/20_add_7_2".
201113-00:14:17,253 nipype.workflow INFO:
[Node] Running "20_add_7_2" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz addtozero /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/19_fill_7/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/03_pad_mask/T_template0_BrainCerebellumProbabilityMask_trans_resampled_maths.nii.gz
201113-00:14:21,115 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.20_add_7_2".
201113-00:14:21,116 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.21_md_7_2" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/21_md_7_2".
201113-00:14:21,123 nipype.workflow INFO:
[Node] Running "21_md_7_2" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz MD /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/20_add_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths.nii.gz 5
201113-00:14:23,121 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.21_md_7_2".
201113-00:14:23,123 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.22_me_7_2" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/22_me_7_2".
201113-00:14:23,129 nipype.workflow INFO:
[Node] Running "22_me_7_2" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz ME /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/21_md_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths.nii.gz 5
201113-00:14:26,575 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.22_me_7_2".
201113-00:14:26,576 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.23_depad_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/23_depad_mask".
201113-00:14:26,583 nipype.workflow INFO:
[Node] Running "23_depad_mask" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz PadImage /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/22_me_7_2/09_relabel_wm_maths_class-03_maths_maths_maths_maths_maths_maths_maths_maths.nii.gz -10
201113-00:14:27,850 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.23_depad_mask".
201113-00:14:27,852 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.msk_conform" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/msk_conform".
201113-00:14:27,858 nipype.workflow INFO:
[Node] Running "msk_conform" ("nipype.interfaces.utility.wrappers.Function")
201113-00:14:28,338 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.msk_conform".
201113-00:14:28,339 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.copy_xform" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/copy_xform".
201113-00:14:28,347 nipype.workflow INFO:
[Node] Running "copy_xform" ("CPAC.utils.interfaces.utils.CopyXForm")
201113-00:14:29,982 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.atropos_wf.copy_xform".
201113-00:14:29,985 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_anatomical_brain_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/sinker_0_anatomical_brain_mask".
201113-00:14:29,993 nipype.workflow INFO:
[Node] Running "sinker_0_anatomical_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:14:30,221 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_anatomical_brain_mask".
201113-00:14:30,223 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.sel_wm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/sel_wm".
201113-00:14:30,227 nipype.workflow INFO:
[Node] Running "sel_wm" ("nipype.interfaces.utility.base.Select")
201113-00:14:30,458 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.sel_wm".
201113-00:14:30,459 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.inu_n4_final" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4_final".
201113-00:14:30,467 nipype.workflow INFO:
[Node] Setting-up "_inu_n4_final0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4_final/mapflow/_inu_n4_final0".
201113-00:14:30,473 nipype.workflow INFO:
[Node] Running "_inu_n4_final0" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-071_ses-1_T1w_resample.nii.gz --convergence [ 50x50x50x50x50, 1e-07 ] --output [ sub-071_ses-1_T1w_resample_corrected.nii.gz, sub-071_ses-1_T1w_resample_bias.nii.gz ] --shrink-factor 4 --weight-image /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/copy_xform/09_relabel_wm_maths_xform.nii.gz
201113-00:15:26,203 nipype.workflow INFO:
[Node] Finished "_inu_n4_final0".
201113-00:15:26,208 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.inu_n4_final".
201113-00:15:26,209 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.apply_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/apply_mask".
201113-00:15:26,217 nipype.workflow INFO:
[Node] Setting-up "_apply_mask0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/apply_mask/mapflow/_apply_mask0".
201113-00:15:26,222 nipype.workflow INFO:
[Node] Running "_apply_mask0" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4_final/mapflow/_inu_n4_final0/sub-071_ses-1_T1w_resample_corrected.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/atropos_wf/copy_xform/09_relabel_wm_mask_xform.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/apply_mask/mapflow/_apply_mask0/sub-071_ses-1_T1w_resample_corrected_masked.nii.gz
201113-00:15:27,594 nipype.workflow INFO:
[Node] Finished "_apply_mask0".
201113-00:15:27,597 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.apply_mask".
201113-00:15:27,598 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.copy_xform" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform".
201113-00:15:27,605 nipype.workflow INFO:
[Node] Running "copy_xform" ("CPAC.utils.interfaces.utils.CopyXForm")
201113-00:15:32,795 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.copy_xform".
201113-00:15:32,797 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt".
201113-00:15:32,806 nipype.workflow INFO:
[Node] Running "Anatomical_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -omat sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.mat -applyisoxfm 2.000000
201113-00:15:36,176 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt".
201113-00:15:36,177 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt".
201113-00:15:36,184 nipype.workflow INFO:
[Node] Running "Anatomical_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -omat sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.mat -applyisoxfm 2.000000
201113-00:15:39,534 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt".
201113-00:15:39,536 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt".
201113-00:15:39,544 nipype.workflow INFO:
[Node] Running "Anatomical_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -omat sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.mat -applyisoxfm 2.000000
201113-00:15:42,851 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt".
201113-00:15:42,853 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt".
201113-00:15:42,862 nipype.workflow INFO:
[Node] Running "Anatomical_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -omat sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.mat -applyisoxfm 2.000000
201113-00:15:46,184 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt".
201113-00:15:46,186 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt".
201113-00:15:46,194 nipype.workflow INFO:
[Node] Running "Anatomical_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -omat sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.mat -applyisoxfm 2.000000
201113-00:15:49,531 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt".
201113-00:15:49,533 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt".
201113-00:15:49,544 nipype.workflow INFO:
[Node] Running "Anatomical_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -omat sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.mat -applyisoxfm 2.000000
201113-00:15:52,874 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt".
201113-00:15:52,875 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt".
201113-00:15:52,884 nipype.workflow INFO:
[Node] Running "Anatomical_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -omat sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.mat -applyisoxfm 2.000000
201113-00:15:56,227 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Anatomical_2mm_flirt".
201113-00:15:56,229 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_FLIRT_0/_scan_tgng_run-3/linear_func_to_anat".
201113-00:15:56,260 nipype.workflow INFO:
[Node] Running "linear_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost corratio -dof 6 -interp trilinear
201113-00:16:01,787 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat".
201113-00:16:01,788 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_FLIRT_0/_scan_tgng_run-2/linear_func_to_anat".
201113-00:16:01,822 nipype.workflow INFO:
[Node] Running "linear_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost corratio -dof 6 -interp trilinear
201113-00:16:07,445 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat".
201113-00:16:07,446 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_FLIRT_0/_scan_tgng_run-1/linear_func_to_anat".
201113-00:16:07,456 nipype.workflow INFO:
[Node] Running "linear_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost corratio -dof 6 -interp trilinear
201113-00:16:13,15 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat".
201113-00:16:13,17 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_FLIRT_0/_scan_ms_run-1/linear_func_to_anat".
201113-00:16:13,28 nipype.workflow INFO:
[Node] Running "linear_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost corratio -dof 6 -interp trilinear
201113-00:16:18,643 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat".
201113-00:16:18,645 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_FLIRT_0/_scan_matching_run-3/linear_func_to_anat".
201113-00:16:18,653 nipype.workflow INFO:
[Node] Running "linear_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost corratio -dof 6 -interp trilinear
201113-00:16:24,217 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat".
201113-00:16:24,218 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_FLIRT_0/_scan_matching_run-2/linear_func_to_anat".
201113-00:16:24,227 nipype.workflow INFO:
[Node] Running "linear_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost corratio -dof 6 -interp trilinear
201113-00:16:29,839 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat".
201113-00:16:29,841 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_FLIRT_0/_scan_matching_run-1/linear_func_to_anat".
201113-00:16:29,849 nipype.workflow INFO:
[Node] Running "linear_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -out sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost corratio -dof 6 -interp trilinear
201113-00:16:35,452 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_to_anat_FLIRT_0.linear_func_to_anat".
201113-00:16:35,454 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_skullstrip_0.montage_skull.resample_u" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_skullstrip_0/montage_skull/resample_u".
201113-00:16:35,459 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:16:36,476 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_skullstrip_0.montage_skull.resample_u".
201113-00:16:36,477 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_skullstrip_0.montage_skull.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_skullstrip_0/montage_skull/montage_s".
201113-00:16:36,484 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_skullstrip_0/montage_skull/montage_s/mapflow/_montage_s0".
201113-00:16:36,488 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:16:38,844 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:16:38,848 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_skullstrip_0.montage_skull.montage_s".
201113-00:16:38,848 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___skullstrip_vis_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/sinker_0_qc___skullstrip_vis_s".
201113-00:16:38,856 nipype.workflow INFO:
[Node] Running "sinker_0_qc___skullstrip_vis_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:16:39,66 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___skullstrip_vis_s/_montage_s0/skull_vis_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/skullstrip_vis_s/_montage_s0/skull_vis_s.png
201113-00:16:39,84 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___skullstrip_vis_s".
201113-00:16:39,85 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_skullstrip_0.montage_skull.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_skullstrip_0/montage_skull/montage_a".
201113-00:16:39,92 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_skullstrip_0/montage_skull/montage_a/mapflow/_montage_a0".
201113-00:16:39,97 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:16:41,688 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:16:41,691 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_skullstrip_0.montage_skull.montage_a".
201113-00:16:41,691 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___skullstrip_vis_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/sinker_0_qc___skullstrip_vis_a".
201113-00:16:41,699 nipype.workflow INFO:
[Node] Running "sinker_0_qc___skullstrip_vis_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:16:41,911 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___skullstrip_vis_a/_montage_a0/skull_vis_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/skullstrip_vis_a/_montage_a0/skull_vis_a.png
201113-00:16:41,928 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___skullstrip_vis_a".
201113-00:16:41,929 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.resample_u" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/resample_u".
201113-00:16:41,933 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:16:42,919 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.resample_u".
201113-00:16:42,921 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_csf_gm_wm_0.resample_u" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_csf_gm_wm_0/resample_u".
201113-00:16:42,925 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:16:43,916 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_csf_gm_wm_0.resample_u".
201113-00:16:43,917 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.seg_preproc_0.segment" in "/outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/segment".
201113-00:16:43,924 nipype.workflow INFO:
[Node] Running "segment" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command:
fast -t 1 -o segment -p -g -S 1 /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/segment/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz
201113-00:21:01,902 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.seg_preproc_0.segment".
201113-00:21:01,905 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_to_anat_bbreg_0.wm_bb_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/wm_bb_mask".
201113-00:21:01,911 nipype.workflow INFO:
[Node] Running "wm_bb_mask" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/segment/segment_prob_2.nii.gz -thr 0.5 -bin /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz
201113-00:21:02,941 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_to_anat_bbreg_0.wm_bb_mask".
201113-00:21:02,943 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-3/bbreg_func_to_anat".
201113-00:21:02,952 nipype.workflow INFO:
[Node] Running "bbreg_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-071_ses-1_T1w_resample.nii.gz -out sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost bbr -wmseg /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz -dof 6 -init /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_FLIRT_0/_scan_tgng_run-3/linear_func_to_anat/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch
201113-00:21:29,119 nipype.interface INFO:
stdout 2020-11-13T00:21:29.119843:Applying POWELL correction
201113-00:21:29,120 nipype.interface INFO:
stdout 2020-11-13T00:21:29.120380:finit, fend, fextrap = 0.565973 , 0.562076 , 0.559962
201113-00:21:29,143 nipype.interface INFO:
stdout 2020-11-13T00:21:29.143139:fval = 0.554764
201113-00:21:29,187 nipype.interface INFO:
stdout 2020-11-13T00:21:29.187877:Applying POWELL correction
201113-00:21:29,188 nipype.interface INFO:
stdout 2020-11-13T00:21:29.188058:finit, fend, fextrap = 0.554764 , 0.551454 , 0.551921
201113-00:21:29,197 nipype.interface INFO:
stdout 2020-11-13T00:21:29.197109:fval = 0.551321
201113-00:23:10,800 nipype.interface INFO:
stdout 2020-11-13T00:23:10.800003:Applying POWELL correction
201113-00:23:10,800 nipype.interface INFO:
stdout 2020-11-13T00:23:10.800458:finit, fend, fextrap = 0.557881 , 0.557441 , 0.557267
201113-00:23:12,762 nipype.interface INFO:
stdout 2020-11-13T00:23:12.762309:fval = 0.557199
201113-00:23:23,151 nipype.interface INFO:
stdout 2020-11-13T00:23:23.151186:0.556663 0.999833 0.013192 -0.012671 0.000000 -0.013054 0.999855 0.010899 0.000000 0.012813 -0.010732 0.999860 0.000000 -0.227831 0.675316 2.875254 1.000000
201113-00:23:25,22 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat".
201113-00:23:25,25 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt".
201113-00:23:25,47 nipype.workflow INFO:
[Node] Running "Functional_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_normalize/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz -omat sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.mat -applyxfm -init /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-3/bbreg_func_to_anat/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:23:48,950 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt".
201113-00:23:48,952 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_tgng_run-3/resample_u".
201113-00:23:48,957 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:23:50,56 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_anat_0.resample_u".
201113-00:23:50,57 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-3/std_dev_anat".
201113-00:23:50,112 nipype.workflow INFO:
[Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
applywarp --in=/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-3/std_dev/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz --ref=/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz --out=/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-3/std_dev_anat/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz --premat=/outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-3/bbreg_func_to_anat/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat --interp=trilinear
201113-00:23:53,754 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev_anat".
201113-00:23:53,755 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.snr" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-3/snr".
201113-00:23:53,761 nipype.workflow INFO:
[Node] Running "snr" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-3/std_dev_anat/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-3/bbreg_func_to_anat/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -expr "b/a" -prefix sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:23:54,7 nipype.interface INFO:
stderr 2020-11-13T00:23:54.007252:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:23:54,7 nipype.interface INFO:
stderr 2020-11-13T00:23:54.007568:++ Authored by: A cast of thousands
201113-00:23:55,877 nipype.interface INFO:
stderr 2020-11-13T00:23:55.877508:++ Output dataset ./sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:23:56,33 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.snr".
201113-00:23:56,35 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.dp_snr" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-3/dp_snr".
201113-00:23:56,39 nipype.workflow INFO:
[Node] Running "dp_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:23:56,933 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.dp_snr".
201113-00:23:56,935 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.resample_o" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-3/resample_o".
201113-00:23:56,938 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:23:57,930 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.resample_o".
201113-00:23:57,931 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-3/montage_s".
201113-00:23:57,937 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-3/montage_s/mapflow/_montage_s0".
201113-00:23:57,942 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:24:00,59 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:24:00,63 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_s".
201113-00:24:00,64 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_qc___snr_s".
201113-00:24:00,72 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:24:00,284 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_s/_scan_tgng_run-3/_montage_s0/snr_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_s/_scan_tgng_run-3/_montage_s0/snr_s.png
201113-00:24:00,303 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_s".
201113-00:24:00,305 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-3/montage_a".
201113-00:24:00,313 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-3/montage_a/mapflow/_montage_a0".
201113-00:24:00,318 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:24:02,762 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:24:02,765 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_a".
201113-00:24:02,766 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_qc___snr_a".
201113-00:24:02,773 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:24:02,986 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_a/_scan_tgng_run-3/_montage_a0/snr_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_a/_scan_tgng_run-3/_montage_a0/snr_a.png
201113-00:24:03,4 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_a".
201113-00:24:03,5 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.hist_snr" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-3/hist_snr".
201113-00:24:03,9 nipype.workflow INFO:
[Node] Running "hist_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:24:03,564 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.hist_snr".
201113-00:24:03,565 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_hist" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_qc___snr_hist".
201113-00:24:03,572 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_hist" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:24:03,782 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_hist/_scan_tgng_run-3/snr_hist_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_hist/_scan_tgng_run-3/snr_hist_plot.png
201113-00:24:03,802 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_hist".
201113-00:24:03,804 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.snr_val" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-3/snr_val".
201113-00:24:03,809 nipype.workflow INFO:
[Node] Running "snr_val" ("CPAC.utils.interfaces.function.Function")
201113-00:24:04,295 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.snr_val".
201113-00:24:04,296 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_val" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_qc___snr_val".
201113-00:24:04,304 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_val" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:24:04,514 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_val/_scan_tgng_run-3/average_snr_file.txt -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_val/_scan_tgng_run-3/average_snr_file.txt
201113-00:24:04,533 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_val".
201113-00:24:04,534 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_in_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_mean_functional_in_anat".
201113-00:24:04,542 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_in_anat" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:24:04,771 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_in_anat".
201113-00:24:04,773 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_to_anat_linear_xfm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_functional_to_anat_linear_xfm".
201113-00:24:04,780 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_anat_linear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:24:05,11 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_to_anat_linear_xfm".
201113-00:24:05,13 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_to_func_linear_xfm_0_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/anat_to_func_linear_xfm_0_0".
201113-00:24:05,19 nipype.workflow INFO:
[Node] Running "anat_to_func_linear_xfm_0_0" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/anat_to_func_linear_xfm_0_0/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt_inv.mat -inverse /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-3/bbreg_func_to_anat/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:24:05,452 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_to_func_linear_xfm_0_0".
201113-00:24:05,454 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.fsl_reg_2_itk_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/fsl_reg_2_itk_0".
201113-00:24:05,461 nipype.workflow INFO:
[Node] Running "fsl_reg_2_itk_0" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -src /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-3/bbreg_func_to_anat/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -fsl2ras -oitk /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/fsl_reg_2_itk_0/affine.txt
201113-00:24:06,84 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.fsl_reg_2_itk_0".
201113-00:24:06,86 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.change_transform_type_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/change_transform_type_0".
201113-00:24:06,90 nipype.workflow INFO:
[Node] Running "change_transform_type_0" ("nipype.interfaces.utility.wrappers.Function")
201113-00:24:06,323 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.change_transform_type_0".
201113-00:24:06,325 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-2/bbreg_func_to_anat".
201113-00:24:06,334 nipype.workflow INFO:
[Node] Running "bbreg_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-071_ses-1_T1w_resample.nii.gz -out sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost bbr -wmseg /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz -dof 6 -init /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_FLIRT_0/_scan_tgng_run-2/linear_func_to_anat/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch
201113-00:26:42,717 nipype.interface INFO:
stdout 2020-11-13T00:26:42.717596:0.543549 0.999929 0.004388 -0.011106 0.000000 -0.004149 0.999761 0.021446 0.000000 0.011198 -0.021398 0.999708 0.000000 -1.161644 2.803348 1.165730 1.000000
201113-00:26:44,585 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat".
201113-00:26:44,588 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt".
201113-00:26:44,611 nipype.workflow INFO:
[Node] Running "Functional_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz -omat sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.mat -applyxfm -init /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-2/bbreg_func_to_anat/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:27:08,496 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt".
201113-00:27:08,498 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_tgng_run-2/resample_u".
201113-00:27:08,503 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:27:09,622 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_anat_0.resample_u".
201113-00:27:09,623 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-2/std_dev_anat".
201113-00:27:09,644 nipype.workflow INFO:
[Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
applywarp --in=/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-2/std_dev/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz --ref=/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz --out=/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-2/std_dev_anat/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz --premat=/outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-2/bbreg_func_to_anat/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat --interp=trilinear
201113-00:27:13,249 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev_anat".
201113-00:27:13,251 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.snr" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-2/snr".
201113-00:27:13,258 nipype.workflow INFO:
[Node] Running "snr" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-2/std_dev_anat/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-2/bbreg_func_to_anat/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -expr "b/a" -prefix sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:27:13,506 nipype.interface INFO:
stderr 2020-11-13T00:27:13.506259:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:27:13,506 nipype.interface INFO:
stderr 2020-11-13T00:27:13.506593:++ Authored by: A cast of thousands
201113-00:27:15,402 nipype.interface INFO:
stderr 2020-11-13T00:27:15.402703:++ Output dataset ./sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:27:15,560 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.snr".
201113-00:27:15,562 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.dp_snr" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-2/dp_snr".
201113-00:27:15,566 nipype.workflow INFO:
[Node] Running "dp_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:27:16,458 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.dp_snr".
201113-00:27:16,460 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.resample_o" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-2/resample_o".
201113-00:27:16,464 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:27:17,472 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.resample_o".
201113-00:27:17,474 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-2/montage_s".
201113-00:27:17,480 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-2/montage_s/mapflow/_montage_s0".
201113-00:27:17,485 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:27:19,605 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:27:19,609 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_s".
201113-00:27:19,609 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_qc___snr_s".
201113-00:27:19,618 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:27:19,831 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_s/_scan_tgng_run-2/_montage_s0/snr_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_s/_scan_tgng_run-2/_montage_s0/snr_s.png
201113-00:27:19,847 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_s".
201113-00:27:19,849 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-2/montage_a".
201113-00:27:19,855 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-2/montage_a/mapflow/_montage_a0".
201113-00:27:19,859 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:27:22,299 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:27:22,303 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_a".
201113-00:27:22,303 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_qc___snr_a".
201113-00:27:22,311 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:27:22,523 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_a/_scan_tgng_run-2/_montage_a0/snr_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_a/_scan_tgng_run-2/_montage_a0/snr_a.png
201113-00:27:22,541 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_a".
201113-00:27:22,543 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.hist_snr" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-2/hist_snr".
201113-00:27:22,547 nipype.workflow INFO:
[Node] Running "hist_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:27:23,97 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.hist_snr".
201113-00:27:23,98 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_hist" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_qc___snr_hist".
201113-00:27:23,105 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_hist" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:27:23,321 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_hist/_scan_tgng_run-2/snr_hist_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_hist/_scan_tgng_run-2/snr_hist_plot.png
201113-00:27:23,340 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_hist".
201113-00:27:23,342 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.snr_val" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-2/snr_val".
201113-00:27:23,346 nipype.workflow INFO:
[Node] Running "snr_val" ("CPAC.utils.interfaces.function.Function")
201113-00:27:23,833 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.snr_val".
201113-00:27:23,834 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_val" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_qc___snr_val".
201113-00:27:23,842 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_val" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:27:24,53 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_val/_scan_tgng_run-2/average_snr_file.txt -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_val/_scan_tgng_run-2/average_snr_file.txt
201113-00:27:24,70 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_val".
201113-00:27:24,72 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_in_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_mean_functional_in_anat".
201113-00:27:24,79 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_in_anat" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:27:24,309 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_in_anat".
201113-00:27:24,311 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_to_anat_linear_xfm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_functional_to_anat_linear_xfm".
201113-00:27:24,318 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_anat_linear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:27:24,549 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_to_anat_linear_xfm".
201113-00:27:24,551 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_to_func_linear_xfm_0_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/anat_to_func_linear_xfm_0_0".
201113-00:27:24,557 nipype.workflow INFO:
[Node] Running "anat_to_func_linear_xfm_0_0" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/anat_to_func_linear_xfm_0_0/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt_inv.mat -inverse /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-2/bbreg_func_to_anat/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:27:24,995 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_to_func_linear_xfm_0_0".
201113-00:27:24,996 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.fsl_reg_2_itk_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/fsl_reg_2_itk_0".
201113-00:27:25,3 nipype.workflow INFO:
[Node] Running "fsl_reg_2_itk_0" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -src /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-2/bbreg_func_to_anat/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -fsl2ras -oitk /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/fsl_reg_2_itk_0/affine.txt
201113-00:27:25,618 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.fsl_reg_2_itk_0".
201113-00:27:25,619 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.change_transform_type_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/change_transform_type_0".
201113-00:27:25,624 nipype.workflow INFO:
[Node] Running "change_transform_type_0" ("nipype.interfaces.utility.wrappers.Function")
201113-00:27:25,851 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.change_transform_type_0".
201113-00:27:25,853 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-1/bbreg_func_to_anat".
201113-00:27:25,862 nipype.workflow INFO:
[Node] Running "bbreg_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-071_ses-1_T1w_resample.nii.gz -out sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost bbr -wmseg /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz -dof 6 -init /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_FLIRT_0/_scan_tgng_run-1/linear_func_to_anat/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch
201113-00:29:55,909 nipype.interface INFO:
stdout 2020-11-13T00:29:55.909165:0.543284 0.999965 0.004706 -0.006936 0.000000 -0.004574 0.999811 0.018915 0.000000 0.007023 -0.018882 0.999797 0.000000 -0.511266 2.656424 1.148905 1.000000
201113-00:29:57,783 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat".
201113-00:29:57,785 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt".
201113-00:29:57,813 nipype.workflow INFO:
[Node] Running "Functional_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz -omat sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.mat -applyxfm -init /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-1/bbreg_func_to_anat/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:30:21,865 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt".
201113-00:30:21,867 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_tgng_run-1/resample_u".
201113-00:30:21,872 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:30:22,957 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_anat_0.resample_u".
201113-00:30:22,958 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-1/std_dev_anat".
201113-00:30:22,998 nipype.workflow INFO:
[Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
applywarp --in=/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-1/std_dev/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz --ref=/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz --out=/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-1/std_dev_anat/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz --premat=/outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-1/bbreg_func_to_anat/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat --interp=trilinear
201113-00:30:26,620 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev_anat".
201113-00:30:26,622 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.snr" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-1/snr".
201113-00:30:26,628 nipype.workflow INFO:
[Node] Running "snr" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-1/std_dev_anat/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-1/bbreg_func_to_anat/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -expr "b/a" -prefix sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:30:26,880 nipype.interface INFO:
stderr 2020-11-13T00:30:26.880735:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:30:26,881 nipype.interface INFO:
stderr 2020-11-13T00:30:26.881143:++ Authored by: A cast of thousands
201113-00:30:28,777 nipype.interface INFO:
stderr 2020-11-13T00:30:28.777164:++ Output dataset ./sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:30:28,935 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.snr".
201113-00:30:28,936 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.dp_snr" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-1/dp_snr".
201113-00:30:28,941 nipype.workflow INFO:
[Node] Running "dp_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:30:29,835 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.dp_snr".
201113-00:30:29,836 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.resample_o" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-1/resample_o".
201113-00:30:29,842 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:30:30,862 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.resample_o".
201113-00:30:30,864 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-1/montage_s".
201113-00:30:30,870 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-1/montage_s/mapflow/_montage_s0".
201113-00:30:30,874 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:30:32,978 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:30:32,982 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_s".
201113-00:30:32,983 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_qc___snr_s".
201113-00:30:32,992 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:30:33,203 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_s/_scan_tgng_run-1/_montage_s0/snr_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_s/_scan_tgng_run-1/_montage_s0/snr_s.png
201113-00:30:33,220 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_s".
201113-00:30:33,222 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-1/montage_a".
201113-00:30:33,228 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_tgng_run-1/montage_a/mapflow/_montage_a0".
201113-00:30:33,231 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:30:35,668 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:30:35,672 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_a".
201113-00:30:35,673 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_qc___snr_a".
201113-00:30:35,681 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:30:35,893 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_a/_scan_tgng_run-1/_montage_a0/snr_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_a/_scan_tgng_run-1/_montage_a0/snr_a.png
201113-00:30:35,909 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_a".
201113-00:30:35,911 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.hist_snr" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-1/hist_snr".
201113-00:30:35,916 nipype.workflow INFO:
[Node] Running "hist_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:30:36,466 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.hist_snr".
201113-00:30:36,467 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_hist" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_qc___snr_hist".
201113-00:30:36,474 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_hist" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:30:36,684 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_hist/_scan_tgng_run-1/snr_hist_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_hist/_scan_tgng_run-1/snr_hist_plot.png
201113-00:30:36,702 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_hist".
201113-00:30:36,704 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.snr_val" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_tgng_run-1/snr_val".
201113-00:30:36,708 nipype.workflow INFO:
[Node] Running "snr_val" ("CPAC.utils.interfaces.function.Function")
201113-00:30:37,194 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.snr_val".
201113-00:30:37,195 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_val" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_qc___snr_val".
201113-00:30:37,202 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_val" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:30:37,413 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_val/_scan_tgng_run-1/average_snr_file.txt -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_val/_scan_tgng_run-1/average_snr_file.txt
201113-00:30:37,431 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_val".
201113-00:30:37,433 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_in_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_mean_functional_in_anat".
201113-00:30:37,440 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_in_anat" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:30:37,670 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_in_anat".
201113-00:30:37,672 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_to_anat_linear_xfm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_functional_to_anat_linear_xfm".
201113-00:30:37,679 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_anat_linear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:30:37,910 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_to_anat_linear_xfm".
201113-00:30:37,911 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_to_func_linear_xfm_0_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/anat_to_func_linear_xfm_0_0".
201113-00:30:37,916 nipype.workflow INFO:
[Node] Running "anat_to_func_linear_xfm_0_0" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/anat_to_func_linear_xfm_0_0/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt_inv.mat -inverse /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-1/bbreg_func_to_anat/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:30:38,357 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_to_func_linear_xfm_0_0".
201113-00:30:38,358 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.fsl_reg_2_itk_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/fsl_reg_2_itk_0".
201113-00:30:38,365 nipype.workflow INFO:
[Node] Running "fsl_reg_2_itk_0" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -src /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_tgng_run-1/bbreg_func_to_anat/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -fsl2ras -oitk /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/fsl_reg_2_itk_0/affine.txt
201113-00:30:38,974 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.fsl_reg_2_itk_0".
201113-00:30:38,976 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.change_transform_type_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/change_transform_type_0".
201113-00:30:38,979 nipype.workflow INFO:
[Node] Running "change_transform_type_0" ("nipype.interfaces.utility.wrappers.Function")
201113-00:30:39,210 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.change_transform_type_0".
201113-00:30:39,211 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_ms_run-1/bbreg_func_to_anat".
201113-00:30:39,221 nipype.workflow INFO:
[Node] Running "bbreg_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-071_ses-1_T1w_resample.nii.gz -out sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost bbr -wmseg /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz -dof 6 -init /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_FLIRT_0/_scan_ms_run-1/linear_func_to_anat/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch
201113-00:33:06,604 nipype.interface INFO:
stdout 2020-11-13T00:33:06.604419:0.567469 0.999839 0.016692 -0.006515 0.000000 -0.016606 0.999776 0.013078 0.000000 0.006732 -0.012968 0.999893 0.000000 1.149409 0.969945 2.025125 1.000000
201113-00:33:08,485 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat".
201113-00:33:08,487 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt".
201113-00:33:08,499 nipype.workflow INFO:
[Node] Running "Functional_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_normalize/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz -omat sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.mat -applyxfm -init /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_ms_run-1/bbreg_func_to_anat/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:33:34,507 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt".
201113-00:33:34,509 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_ms_run-1/resample_u".
201113-00:33:34,514 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:33:35,600 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_anat_0.resample_u".
201113-00:33:35,601 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_ms_run-1/std_dev_anat".
201113-00:33:35,637 nipype.workflow INFO:
[Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
applywarp --in=/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_ms_run-1/std_dev/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz --ref=/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz --out=/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_ms_run-1/std_dev_anat/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz --premat=/outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_ms_run-1/bbreg_func_to_anat/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat --interp=trilinear
201113-00:33:39,215 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev_anat".
201113-00:33:39,216 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.snr" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_ms_run-1/snr".
201113-00:33:39,222 nipype.workflow INFO:
[Node] Running "snr" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_ms_run-1/std_dev_anat/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_ms_run-1/bbreg_func_to_anat/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -expr "b/a" -prefix sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:33:39,467 nipype.interface INFO:
stderr 2020-11-13T00:33:39.467804:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:33:39,468 nipype.interface INFO:
stderr 2020-11-13T00:33:39.468366:++ Authored by: A cast of thousands
201113-00:33:41,342 nipype.interface INFO:
stderr 2020-11-13T00:33:41.342250:++ Output dataset ./sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:33:41,495 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.snr".
201113-00:33:41,496 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.dp_snr" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_ms_run-1/dp_snr".
201113-00:33:41,499 nipype.workflow INFO:
[Node] Running "dp_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:33:42,380 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.dp_snr".
201113-00:33:42,381 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.resample_o" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_ms_run-1/resample_o".
201113-00:33:42,386 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:33:43,368 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.resample_o".
201113-00:33:43,369 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_ms_run-1/montage_s".
201113-00:33:43,376 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_ms_run-1/montage_s/mapflow/_montage_s0".
201113-00:33:43,380 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:33:45,493 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:33:45,497 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_s".
201113-00:33:45,497 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_qc___snr_s".
201113-00:33:45,504 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:33:45,715 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_s/_scan_ms_run-1/_montage_s0/snr_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_s/_scan_ms_run-1/_montage_s0/snr_s.png
201113-00:33:45,733 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_s".
201113-00:33:45,734 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_ms_run-1/montage_a".
201113-00:33:45,740 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_ms_run-1/montage_a/mapflow/_montage_a0".
201113-00:33:45,745 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:33:48,164 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:33:48,167 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_a".
201113-00:33:48,167 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_qc___snr_a".
201113-00:33:48,175 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:33:48,387 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_a/_scan_ms_run-1/_montage_a0/snr_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_a/_scan_ms_run-1/_montage_a0/snr_a.png
201113-00:33:48,406 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_a".
201113-00:33:48,408 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.hist_snr" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_ms_run-1/hist_snr".
201113-00:33:48,412 nipype.workflow INFO:
[Node] Running "hist_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:33:48,960 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.hist_snr".
201113-00:33:48,962 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_hist" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_qc___snr_hist".
201113-00:33:48,969 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_hist" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:33:49,182 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_hist/_scan_ms_run-1/snr_hist_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_hist/_scan_ms_run-1/snr_hist_plot.png
201113-00:33:49,200 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_hist".
201113-00:33:49,202 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.snr_val" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_ms_run-1/snr_val".
201113-00:33:49,206 nipype.workflow INFO:
[Node] Running "snr_val" ("CPAC.utils.interfaces.function.Function")
201113-00:33:49,691 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.snr_val".
201113-00:33:49,693 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_val" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_qc___snr_val".
201113-00:33:49,701 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_val" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:33:49,913 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_val/_scan_ms_run-1/average_snr_file.txt -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_val/_scan_ms_run-1/average_snr_file.txt
201113-00:33:49,930 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_val".
201113-00:33:49,932 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_in_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_mean_functional_in_anat".
201113-00:33:49,939 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_in_anat" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:33:50,171 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_in_anat".
201113-00:33:50,173 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_to_anat_linear_xfm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_functional_to_anat_linear_xfm".
201113-00:33:50,180 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_anat_linear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:33:50,411 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_to_anat_linear_xfm".
201113-00:33:50,413 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_to_func_linear_xfm_0_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/anat_to_func_linear_xfm_0_0".
201113-00:33:50,418 nipype.workflow INFO:
[Node] Running "anat_to_func_linear_xfm_0_0" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/anat_to_func_linear_xfm_0_0/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt_inv.mat -inverse /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_ms_run-1/bbreg_func_to_anat/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:33:50,859 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_to_func_linear_xfm_0_0".
201113-00:33:50,861 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.fsl_reg_2_itk_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/fsl_reg_2_itk_0".
201113-00:33:50,867 nipype.workflow INFO:
[Node] Running "fsl_reg_2_itk_0" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -src /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_ms_run-1/bbreg_func_to_anat/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -fsl2ras -oitk /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/fsl_reg_2_itk_0/affine.txt
201113-00:33:51,486 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.fsl_reg_2_itk_0".
201113-00:33:51,488 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.change_transform_type_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/change_transform_type_0".
201113-00:33:51,492 nipype.workflow INFO:
[Node] Running "change_transform_type_0" ("nipype.interfaces.utility.wrappers.Function")
201113-00:33:51,722 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.change_transform_type_0".
201113-00:33:51,723 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_matching_run-3/bbreg_func_to_anat".
201113-00:33:51,732 nipype.workflow INFO:
[Node] Running "bbreg_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-071_ses-1_T1w_resample.nii.gz -out sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost bbr -wmseg /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz -dof 6 -init /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_FLIRT_0/_scan_matching_run-3/linear_func_to_anat/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch
201113-00:36:27,133 nipype.interface INFO:
stdout 2020-11-13T00:36:27.132988:0.561859 0.999662 0.023316 -0.011538 0.000000 -0.023200 0.999680 0.010057 0.000000 0.011769 -0.009786 0.999883 0.000000 1.306307 -0.031512 2.826740 1.000000
201113-00:36:29,3 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat".
201113-00:36:29,5 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt".
201113-00:36:29,15 nipype.workflow INFO:
[Node] Running "Functional_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_normalize/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz -omat sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.mat -applyxfm -init /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_matching_run-3/bbreg_func_to_anat/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:36:46,936 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt".
201113-00:36:46,937 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_matching_run-3/resample_u".
201113-00:36:46,943 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:36:48,58 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_anat_0.resample_u".
201113-00:36:48,59 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-3/std_dev_anat".
201113-00:36:48,83 nipype.workflow INFO:
[Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
applywarp --in=/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-3/std_dev/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz --ref=/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz --out=/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-3/std_dev_anat/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz --premat=/outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_matching_run-3/bbreg_func_to_anat/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat --interp=trilinear
201113-00:36:51,687 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev_anat".
201113-00:36:51,689 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.snr" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-3/snr".
201113-00:36:51,695 nipype.workflow INFO:
[Node] Running "snr" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-3/std_dev_anat/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_matching_run-3/bbreg_func_to_anat/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -expr "b/a" -prefix sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:36:51,943 nipype.interface INFO:
stderr 2020-11-13T00:36:51.943571:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:36:51,943 nipype.interface INFO:
stderr 2020-11-13T00:36:51.943953:++ Authored by: A cast of thousands
201113-00:36:53,824 nipype.interface INFO:
stderr 2020-11-13T00:36:53.824202:++ Output dataset ./sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:36:53,981 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.snr".
201113-00:36:53,983 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.dp_snr" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-3/dp_snr".
201113-00:36:53,988 nipype.workflow INFO:
[Node] Running "dp_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:36:54,873 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.dp_snr".
201113-00:36:54,875 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.resample_o" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_matching_run-3/resample_o".
201113-00:36:54,879 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:36:55,879 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.resample_o".
201113-00:36:55,880 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_matching_run-3/montage_s".
201113-00:36:55,886 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_matching_run-3/montage_s/mapflow/_montage_s0".
201113-00:36:55,890 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:36:58,1 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:36:58,6 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_s".
201113-00:36:58,6 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_qc___snr_s".
201113-00:36:58,14 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:36:58,225 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_s/_scan_matching_run-3/_montage_s0/snr_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_s/_scan_matching_run-3/_montage_s0/snr_s.png
201113-00:36:58,242 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_s".
201113-00:36:58,243 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_matching_run-3/montage_a".
201113-00:36:58,249 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_matching_run-3/montage_a/mapflow/_montage_a0".
201113-00:36:58,254 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:37:00,699 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:37:00,703 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_a".
201113-00:37:00,703 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_qc___snr_a".
201113-00:37:00,711 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:37:00,923 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_a/_scan_matching_run-3/_montage_a0/snr_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_a/_scan_matching_run-3/_montage_a0/snr_a.png
201113-00:37:00,938 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_a".
201113-00:37:00,940 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.hist_snr" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-3/hist_snr".
201113-00:37:00,944 nipype.workflow INFO:
[Node] Running "hist_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:37:01,487 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.hist_snr".
201113-00:37:01,488 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_hist" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_qc___snr_hist".
201113-00:37:01,495 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_hist" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:37:01,704 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_hist/_scan_matching_run-3/snr_hist_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_hist/_scan_matching_run-3/snr_hist_plot.png
201113-00:37:01,721 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_hist".
201113-00:37:01,723 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.snr_val" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-3/snr_val".
201113-00:37:01,727 nipype.workflow INFO:
[Node] Running "snr_val" ("CPAC.utils.interfaces.function.Function")
201113-00:37:02,208 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.snr_val".
201113-00:37:02,210 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_val" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_qc___snr_val".
201113-00:37:02,217 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_val" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:37:02,431 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_val/_scan_matching_run-3/average_snr_file.txt -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_val/_scan_matching_run-3/average_snr_file.txt
201113-00:37:02,447 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_val".
201113-00:37:02,449 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_in_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_mean_functional_in_anat".
201113-00:37:02,456 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_in_anat" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:37:02,683 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_in_anat".
201113-00:37:02,685 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_to_anat_linear_xfm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_functional_to_anat_linear_xfm".
201113-00:37:02,692 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_anat_linear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:37:02,922 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_to_anat_linear_xfm".
201113-00:37:02,924 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_to_func_linear_xfm_0_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/anat_to_func_linear_xfm_0_0".
201113-00:37:02,929 nipype.workflow INFO:
[Node] Running "anat_to_func_linear_xfm_0_0" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/anat_to_func_linear_xfm_0_0/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt_inv.mat -inverse /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_matching_run-3/bbreg_func_to_anat/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:37:03,368 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_to_func_linear_xfm_0_0".
201113-00:37:03,370 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.fsl_reg_2_itk_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/fsl_reg_2_itk_0".
201113-00:37:03,376 nipype.workflow INFO:
[Node] Running "fsl_reg_2_itk_0" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -src /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_matching_run-3/bbreg_func_to_anat/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -fsl2ras -oitk /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/fsl_reg_2_itk_0/affine.txt
201113-00:37:03,999 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.fsl_reg_2_itk_0".
201113-00:37:04,1 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.change_transform_type_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/change_transform_type_0".
201113-00:37:04,5 nipype.workflow INFO:
[Node] Running "change_transform_type_0" ("nipype.interfaces.utility.wrappers.Function")
201113-00:37:04,231 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.change_transform_type_0".
201113-00:37:04,233 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_matching_run-2/bbreg_func_to_anat".
201113-00:37:04,241 nipype.workflow INFO:
[Node] Running "bbreg_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-071_ses-1_T1w_resample.nii.gz -out sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost bbr -wmseg /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz -dof 6 -init /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_FLIRT_0/_scan_matching_run-2/linear_func_to_anat/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch
201113-00:39:24,321 nipype.interface INFO:
stdout 2020-11-13T00:39:24.321096:0.540344 0.999967 0.007575 -0.002902 0.000000 -0.007538 0.999893 0.012510 0.000000 0.002997 -0.012487 0.999918 0.000000 0.389368 1.467106 1.668454 1.000000
201113-00:39:26,196 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat".
201113-00:39:26,199 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt".
201113-00:39:26,210 nipype.workflow INFO:
[Node] Running "Functional_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_normalize/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz -omat sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.mat -applyxfm -init /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_matching_run-2/bbreg_func_to_anat/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:39:44,194 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt".
201113-00:39:44,196 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_matching_run-2/resample_u".
201113-00:39:44,202 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:39:45,297 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_anat_0.resample_u".
201113-00:39:45,298 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-2/std_dev_anat".
201113-00:39:45,332 nipype.workflow INFO:
[Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
applywarp --in=/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-2/std_dev/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz --ref=/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz --out=/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-2/std_dev_anat/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz --premat=/outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_matching_run-2/bbreg_func_to_anat/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat --interp=trilinear
201113-00:39:48,933 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev_anat".
201113-00:39:48,935 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.snr" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-2/snr".
201113-00:39:48,940 nipype.workflow INFO:
[Node] Running "snr" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-2/std_dev_anat/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_matching_run-2/bbreg_func_to_anat/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -expr "b/a" -prefix sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:39:49,190 nipype.interface INFO:
stderr 2020-11-13T00:39:49.190025:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:39:49,190 nipype.interface INFO:
stderr 2020-11-13T00:39:49.190395:++ Authored by: A cast of thousands
201113-00:39:51,64 nipype.interface INFO:
stderr 2020-11-13T00:39:51.064351:++ Output dataset ./sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:39:51,221 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.snr".
201113-00:39:51,223 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.dp_snr" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-2/dp_snr".
201113-00:39:51,229 nipype.workflow INFO:
[Node] Running "dp_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:39:52,121 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.dp_snr".
201113-00:39:52,122 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.resample_o" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_matching_run-2/resample_o".
201113-00:39:52,129 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:39:53,151 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.resample_o".
201113-00:39:53,152 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_matching_run-2/montage_s".
201113-00:39:53,161 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_matching_run-2/montage_s/mapflow/_montage_s0".
201113-00:39:53,168 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:39:55,284 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:39:55,288 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_s".
201113-00:39:55,288 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_qc___snr_s".
201113-00:39:55,300 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:39:55,512 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_s/_scan_matching_run-2/_montage_s0/snr_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_s/_scan_matching_run-2/_montage_s0/snr_s.png
201113-00:39:55,530 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_s".
201113-00:39:55,532 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_matching_run-2/montage_a".
201113-00:39:55,539 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_matching_run-2/montage_a/mapflow/_montage_a0".
201113-00:39:55,543 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:39:57,985 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:39:57,987 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_a".
201113-00:39:57,988 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_qc___snr_a".
201113-00:39:57,995 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:39:58,204 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_a/_scan_matching_run-2/_montage_a0/snr_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_a/_scan_matching_run-2/_montage_a0/snr_a.png
201113-00:39:58,222 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_a".
201113-00:39:58,223 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.hist_snr" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-2/hist_snr".
201113-00:39:58,227 nipype.workflow INFO:
[Node] Running "hist_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:39:58,786 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.hist_snr".
201113-00:39:58,787 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_hist" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_qc___snr_hist".
201113-00:39:58,793 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_hist" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:39:59,4 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_hist/_scan_matching_run-2/snr_hist_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_hist/_scan_matching_run-2/snr_hist_plot.png
201113-00:39:59,23 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_hist".
201113-00:39:59,24 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.snr_val" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-2/snr_val".
201113-00:39:59,28 nipype.workflow INFO:
[Node] Running "snr_val" ("CPAC.utils.interfaces.function.Function")
201113-00:39:59,513 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.snr_val".
201113-00:39:59,514 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_val" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_qc___snr_val".
201113-00:39:59,522 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_val" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:39:59,733 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_val/_scan_matching_run-2/average_snr_file.txt -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_val/_scan_matching_run-2/average_snr_file.txt
201113-00:39:59,750 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_val".
201113-00:39:59,752 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_in_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_mean_functional_in_anat".
201113-00:39:59,759 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_in_anat" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:39:59,990 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_in_anat".
201113-00:39:59,992 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_to_anat_linear_xfm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_functional_to_anat_linear_xfm".
201113-00:39:59,999 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_anat_linear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:40:00,232 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_to_anat_linear_xfm".
201113-00:40:00,234 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_to_func_linear_xfm_0_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/anat_to_func_linear_xfm_0_0".
201113-00:40:00,241 nipype.workflow INFO:
[Node] Running "anat_to_func_linear_xfm_0_0" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/anat_to_func_linear_xfm_0_0/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt_inv.mat -inverse /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_matching_run-2/bbreg_func_to_anat/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:40:00,688 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_to_func_linear_xfm_0_0".
201113-00:40:00,690 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.fsl_reg_2_itk_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/fsl_reg_2_itk_0".
201113-00:40:00,697 nipype.workflow INFO:
[Node] Running "fsl_reg_2_itk_0" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -src /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_matching_run-2/bbreg_func_to_anat/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -fsl2ras -oitk /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/fsl_reg_2_itk_0/affine.txt
201113-00:40:01,318 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.fsl_reg_2_itk_0".
201113-00:40:01,319 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.change_transform_type_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/change_transform_type_0".
201113-00:40:01,324 nipype.workflow INFO:
[Node] Running "change_transform_type_0" ("nipype.interfaces.utility.wrappers.Function")
201113-00:40:01,556 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.change_transform_type_0".
201113-00:40:01,558 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_matching_run-1/bbreg_func_to_anat".
201113-00:40:01,594 nipype.workflow INFO:
[Node] Running "bbreg_func_to_anat" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_reorient/sub-071_ses-1_T1w_resample.nii.gz -out sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -omat sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -cost bbr -wmseg /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/wm_bb_mask/segment_prob_2_maths.nii.gz -dof 6 -init /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_FLIRT_0/_scan_matching_run-1/linear_func_to_anat/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch
201113-00:42:05,787 nipype.interface INFO:
stdout 2020-11-13T00:42:05.787743:0.536642 0.999988 0.004443 -0.002199 0.000000 -0.004411 0.999887 0.014343 0.000000 0.002263 -0.014333 0.999895 0.000000 -0.013389 1.852440 1.333786 1.000000
201113-00:42:07,672 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_to_anat_bbreg_0.bbreg_func_to_anat".
201113-00:42:07,674 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt".
201113-00:42:07,684 nipype.workflow INFO:
[Node] Running "Functional_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_normalize/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz -omat sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.mat -applyxfm -init /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_matching_run-1/bbreg_func_to_anat/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:42:25,596 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.Functional_2mm_flirt".
201113-00:42:25,597 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_matching_run-1/resample_u".
201113-00:42:25,603 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-00:42:26,695 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_anat_0.resample_u".
201113-00:42:26,696 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-1/std_dev_anat".
201113-00:42:26,703 nipype.workflow INFO:
[Node] Running "std_dev_anat" ("nipype.interfaces.fsl.preprocess.ApplyWarp"), a CommandLine Interface with command:
applywarp --in=/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-1/std_dev/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz --ref=/outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz --out=/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-1/std_dev_anat/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz --premat=/outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_matching_run-1/bbreg_func_to_anat/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat --interp=trilinear
201113-00:42:30,287 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.std_dev_anat".
201113-00:42:30,288 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.snr" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-1/snr".
201113-00:42:30,294 nipype.workflow INFO:
[Node] Running "snr" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-1/std_dev_anat/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_matching_run-1/bbreg_func_to_anat/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.nii.gz -expr "b/a" -prefix sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:42:30,542 nipype.interface INFO:
stderr 2020-11-13T00:42:30.542910:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:42:30,543 nipype.interface INFO:
stderr 2020-11-13T00:42:30.543292:++ Authored by: A cast of thousands
201113-00:42:32,431 nipype.interface INFO:
stderr 2020-11-13T00:42:32.431857:++ Output dataset ./sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat_warp_calc.nii.gz
201113-00:42:32,587 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.snr".
201113-00:42:32,589 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.dp_snr" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-1/dp_snr".
201113-00:42:32,593 nipype.workflow INFO:
[Node] Running "dp_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:42:33,484 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.dp_snr".
201113-00:42:33,485 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.resample_o" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_matching_run-1/resample_o".
201113-00:42:33,490 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:42:34,500 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.resample_o".
201113-00:42:34,502 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_matching_run-1/montage_s".
201113-00:42:34,508 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_matching_run-1/montage_s/mapflow/_montage_s0".
201113-00:42:34,513 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:42:36,622 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:42:36,626 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_s".
201113-00:42:36,626 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_qc___snr_s".
201113-00:42:36,633 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:42:36,843 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_s/_scan_matching_run-1/_montage_s0/snr_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_s/_scan_matching_run-1/_montage_s0/snr_s.png
201113-00:42:36,859 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_s".
201113-00:42:36,861 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_matching_run-1/montage_a".
201113-00:42:36,868 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/montage_snr/_scan_matching_run-1/montage_a/mapflow/_montage_a0".
201113-00:42:36,872 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:42:39,321 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:42:39,325 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.montage_snr.montage_a".
201113-00:42:39,325 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_qc___snr_a".
201113-00:42:39,333 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:42:39,544 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_a/_scan_matching_run-1/_montage_a0/snr_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_a/_scan_matching_run-1/_montage_a0/snr_a.png
201113-00:42:39,560 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_a".
201113-00:42:39,562 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.hist_snr" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-1/hist_snr".
201113-00:42:39,566 nipype.workflow INFO:
[Node] Running "hist_snr" ("CPAC.utils.interfaces.function.Function")
201113-00:42:40,112 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.hist_snr".
201113-00:42:40,114 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_hist" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_qc___snr_hist".
201113-00:42:40,121 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_hist" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:42:40,332 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_hist/_scan_matching_run-1/snr_hist_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_hist/_scan_matching_run-1/snr_hist_plot.png
201113-00:42:40,349 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_hist".
201113-00:42:40,350 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.qc_snr_0.snr_val" in "/outputs/tmp/resting_preproc_sub-071_ses-1/qc_snr_0/_scan_matching_run-1/snr_val".
201113-00:42:40,355 nipype.workflow INFO:
[Node] Running "snr_val" ("CPAC.utils.interfaces.function.Function")
201113-00:42:40,836 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.qc_snr_0.snr_val".
201113-00:42:40,837 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_val" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_qc___snr_val".
201113-00:42:40,844 nipype.workflow INFO:
[Node] Running "sinker_0_qc___snr_val" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:42:41,54 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___snr_val/_scan_matching_run-1/average_snr_file.txt -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/snr_val/_scan_matching_run-1/average_snr_file.txt
201113-00:42:41,72 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___snr_val".
201113-00:42:41,73 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_in_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_mean_functional_in_anat".
201113-00:42:41,81 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_in_anat" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:42:41,309 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_in_anat".
201113-00:42:41,311 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_to_anat_linear_xfm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_functional_to_anat_linear_xfm".
201113-00:42:41,319 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_anat_linear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:42:41,549 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_to_anat_linear_xfm".
201113-00:42:41,550 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_to_func_linear_xfm_0_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/anat_to_func_linear_xfm_0_0".
201113-00:42:41,556 nipype.workflow INFO:
[Node] Running "anat_to_func_linear_xfm_0_0" ("nipype.interfaces.fsl.utils.ConvertXFM"), a CommandLine Interface with command:
convert_xfm -omat /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/anat_to_func_linear_xfm_0_0/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt_inv.mat -inverse /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_matching_run-1/bbreg_func_to_anat/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat
201113-00:42:41,988 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_to_func_linear_xfm_0_0".
201113-00:42:41,989 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.fsl_reg_2_itk_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/fsl_reg_2_itk_0".
201113-00:42:41,996 nipype.workflow INFO:
[Node] Running "fsl_reg_2_itk_0" ("nipype.interfaces.c3.C3dAffineTool"), a CommandLine Interface with command:
c3d_affine_tool -ref /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz -src /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-1/func_to_anat_bbreg_0/_scan_matching_run-1/bbreg_func_to_anat/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_flirt.mat -fsl2ras -oitk /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/fsl_reg_2_itk_0/affine.txt
201113-00:42:42,605 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.fsl_reg_2_itk_0".
201113-00:42:42,607 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.change_transform_type_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/change_transform_type_0".
201113-00:42:42,611 nipype.workflow INFO:
[Node] Running "change_transform_type_0" ("nipype.interfaces.utility.wrappers.Function")
201113-00:42:42,841 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.change_transform_type_0".
201113-00:42:42,842 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_seg_probability_maps" in "/outputs/tmp/resting_preproc_sub-071_ses-1/sinker_0_seg_probability_maps".
201113-00:42:42,851 nipype.workflow INFO:
[Node] Running "sinker_0_seg_probability_maps" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:42:43,81 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_seg_probability_maps".
201113-00:42:43,82 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_seg_partial_volume_map" in "/outputs/tmp/resting_preproc_sub-071_ses-1/sinker_0_seg_partial_volume_map".
201113-00:42:43,90 nipype.workflow INFO:
[Node] Running "sinker_0_seg_partial_volume_map" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:42:43,320 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_seg_partial_volume_map".
201113-00:42:43,322 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_seg_partial_volume_files" in "/outputs/tmp/resting_preproc_sub-071_ses-1/sinker_0_seg_partial_volume_files".
201113-00:42:43,329 nipype.workflow INFO:
[Node] Running "sinker_0_seg_partial_volume_files" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:42:43,563 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_seg_partial_volume_files".
201113-00:42:43,565 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_seg_mixeltype" in "/outputs/tmp/resting_preproc_sub-071_ses-1/sinker_0_seg_mixeltype".
201113-00:42:43,574 nipype.workflow INFO:
[Node] Running "sinker_0_seg_mixeltype" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:42:43,806 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_seg_mixeltype".
201113-00:42:43,808 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.seg_preproc_0.GM.threshold_segmentmap_GM" in "/outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/GM/threshold_segmentmap_GM".
201113-00:42:43,815 nipype.workflow INFO:
[Node] Running "threshold_segmentmap_GM" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/segment/segment_prob_1.nii.gz -thr 0.950000 /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/GM/threshold_segmentmap_GM/segment_prob_1_maths.nii.gz
201113-00:42:44,783 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.seg_preproc_0.GM.threshold_segmentmap_GM".
201113-00:42:44,784 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.seg_preproc_0.GM.binarize_GM" in "/outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/GM/binarize_GM".
201113-00:42:44,790 nipype.workflow INFO:
[Node] Running "binarize_GM" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/GM/threshold_segmentmap_GM/segment_prob_1_maths.nii.gz -bin /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/GM/binarize_GM/segment_prob_1_maths_maths.nii.gz
201113-00:42:45,735 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.seg_preproc_0.GM.binarize_GM".
201113-00:42:45,736 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_csf_gm_wm_0.resample_o_gm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_csf_gm_wm_0/resample_o_gm".
201113-00:42:45,739 nipype.workflow INFO:
[Node] Running "resample_o_gm" ("CPAC.utils.interfaces.function.Function")
201113-00:42:46,558 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_csf_gm_wm_0.resample_o_gm".
201113-00:42:46,560 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_anatomical_gm_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/sinker_0_anatomical_gm_mask".
201113-00:42:46,568 nipype.workflow INFO:
[Node] Running "sinker_0_anatomical_gm_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:42:46,798 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_anatomical_gm_mask".
201113-00:42:46,799 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.seg_preproc_0.WM.threshold_segmentmap_WM" in "/outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/WM/threshold_segmentmap_WM".
201113-00:42:46,805 nipype.workflow INFO:
[Node] Running "threshold_segmentmap_WM" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/segment/segment_prob_2.nii.gz -thr 0.950000 /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/WM/threshold_segmentmap_WM/segment_prob_2_maths.nii.gz
201113-00:42:47,805 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.seg_preproc_0.WM.threshold_segmentmap_WM".
201113-00:42:47,806 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.seg_preproc_0.WM.binarize_WM" in "/outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/WM/binarize_WM".
201113-00:42:47,811 nipype.workflow INFO:
[Node] Running "binarize_WM" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/WM/threshold_segmentmap_WM/segment_prob_2_maths.nii.gz -bin /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/WM/binarize_WM/segment_prob_2_maths_maths.nii.gz
201113-00:42:48,763 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.seg_preproc_0.WM.binarize_WM".
201113-00:42:48,764 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.seg_preproc_0.WM.erode_skullstrip_mask_WM" in "/outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/WM/erode_skullstrip_mask_WM".
201113-00:42:48,772 nipype.workflow INFO:
[Node] Running "erode_skullstrip_mask_WM" ("nipype.interfaces.utility.wrappers.Function")
201113-00:42:53,325 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.seg_preproc_0.WM.erode_skullstrip_mask_WM".
201113-00:42:53,326 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.seg_preproc_0.WM.erosion_segmentmap_WM" in "/outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM".
201113-00:42:53,331 nipype.workflow INFO:
[Node] Running "erosion_segmentmap_WM" ("nipype.interfaces.utility.wrappers.Function")
201113-00:42:54,279 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.seg_preproc_0.WM.erosion_segmentmap_WM".
201113-00:42:54,281 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_2mm_flirt".
201113-00:42:54,290 nipype.workflow INFO:
[Node] Running "WhiteMatter_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:42:55,38 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt".
201113-00:42:55,39 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_merge_masks".
201113-00:42:55,45 nipype.workflow INFO:
[Node] Running "WhiteMatter_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:42:55,271 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks".
201113-00:42:55,272 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks".
201113-00:42:55,278 nipype.workflow INFO:
[Node] Running "WhiteMatter_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:42:55,536 nipype.interface INFO:
stderr 2020-11-13T00:42:55.535984:++ no -frac option: defaulting to -union
201113-00:42:55,536 nipype.interface INFO:
stderr 2020-11-13T00:42:55.536492:++ processing 1 input dataset(s), NN=2...
201113-00:42:55,536 nipype.interface INFO:
stderr 2020-11-13T00:42:55.536706:++ padding all datasets by 0 (for dilations)
201113-00:42:55,572 nipype.interface INFO:
stderr 2020-11-13T00:42:55.572531:++ frac 0 over 1 volumes gives min count 0
201113-00:42:55,573 nipype.interface INFO:
stderr 2020-11-13T00:42:55.573949:++ voxel limits: 0 clipped, 6024 survived, 1331688 were zero
201113-00:42:55,574 nipype.interface INFO:
stderr 2020-11-13T00:42:55.574322:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:42:55,592 nipype.interface INFO:
stderr 2020-11-13T00:42:55.592265:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:42:55,752 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks".
201113-00:42:55,754 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_mean".
201113-00:42:55,761 nipype.workflow INFO:
[Node] Running "WhiteMatter_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:42:59,135 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_mean".
201113-00:42:59,136 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_2mm_flirt".
201113-00:42:59,143 nipype.workflow INFO:
[Node] Running "WhiteMatter_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:42:59,851 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt".
201113-00:42:59,852 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_merge_masks".
201113-00:42:59,857 nipype.workflow INFO:
[Node] Running "WhiteMatter_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:43:00,86 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks".
201113-00:43:00,87 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks".
201113-00:43:00,93 nipype.workflow INFO:
[Node] Running "WhiteMatter_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:43:00,348 nipype.interface INFO:
stderr 2020-11-13T00:43:00.348785:++ no -frac option: defaulting to -union
201113-00:43:00,349 nipype.interface INFO:
stderr 2020-11-13T00:43:00.349214:++ processing 1 input dataset(s), NN=2...
201113-00:43:00,349 nipype.interface INFO:
stderr 2020-11-13T00:43:00.349377:++ padding all datasets by 0 (for dilations)
201113-00:43:00,385 nipype.interface INFO:
stderr 2020-11-13T00:43:00.385423:++ frac 0 over 1 volumes gives min count 0
201113-00:43:00,386 nipype.interface INFO:
stderr 2020-11-13T00:43:00.386831:++ voxel limits: 0 clipped, 6024 survived, 1331688 were zero
201113-00:43:00,387 nipype.interface INFO:
stderr 2020-11-13T00:43:00.387007:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:43:00,403 nipype.interface INFO:
stderr 2020-11-13T00:43:00.403018:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:43:00,557 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks".
201113-00:43:00,558 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_mean".
201113-00:43:00,564 nipype.workflow INFO:
[Node] Running "WhiteMatter_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:43:03,955 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_mean".
201113-00:43:03,956 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_2mm_flirt".
201113-00:43:03,964 nipype.workflow INFO:
[Node] Running "WhiteMatter_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:43:04,676 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt".
201113-00:43:04,677 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_merge_masks".
201113-00:43:04,684 nipype.workflow INFO:
[Node] Running "WhiteMatter_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:43:04,909 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks".
201113-00:43:04,911 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks".
201113-00:43:04,917 nipype.workflow INFO:
[Node] Running "WhiteMatter_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:43:05,161 nipype.interface INFO:
stderr 2020-11-13T00:43:05.161474:++ no -frac option: defaulting to -union
201113-00:43:05,161 nipype.interface INFO:
stderr 2020-11-13T00:43:05.161821:++ processing 1 input dataset(s), NN=2...
201113-00:43:05,162 nipype.interface INFO:
stderr 2020-11-13T00:43:05.161980:++ padding all datasets by 0 (for dilations)
201113-00:43:05,192 nipype.interface INFO:
stderr 2020-11-13T00:43:05.192891:++ frac 0 over 1 volumes gives min count 0
201113-00:43:05,194 nipype.interface INFO:
stderr 2020-11-13T00:43:05.194294:++ voxel limits: 0 clipped, 6024 survived, 1331688 were zero
201113-00:43:05,194 nipype.interface INFO:
stderr 2020-11-13T00:43:05.194464:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:43:05,212 nipype.interface INFO:
stderr 2020-11-13T00:43:05.212249:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:43:05,366 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks".
201113-00:43:05,368 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_mean".
201113-00:43:05,374 nipype.workflow INFO:
[Node] Running "WhiteMatter_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:43:08,735 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_mean".
201113-00:43:08,737 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_2mm_flirt".
201113-00:43:08,744 nipype.workflow INFO:
[Node] Running "WhiteMatter_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:43:09,463 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt".
201113-00:43:09,465 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_merge_masks".
201113-00:43:09,470 nipype.workflow INFO:
[Node] Running "WhiteMatter_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:43:09,703 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks".
201113-00:43:09,704 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks".
201113-00:43:09,711 nipype.workflow INFO:
[Node] Running "WhiteMatter_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:43:09,959 nipype.interface INFO:
stderr 2020-11-13T00:43:09.959284:++ no -frac option: defaulting to -union
201113-00:43:09,959 nipype.interface INFO:
stderr 2020-11-13T00:43:09.959635:++ processing 1 input dataset(s), NN=2...
201113-00:43:09,959 nipype.interface INFO:
stderr 2020-11-13T00:43:09.959798:++ padding all datasets by 0 (for dilations)
201113-00:43:09,992 nipype.interface INFO:
stderr 2020-11-13T00:43:09.992056:++ frac 0 over 1 volumes gives min count 0
201113-00:43:09,993 nipype.interface INFO:
stderr 2020-11-13T00:43:09.993454:++ voxel limits: 0 clipped, 6024 survived, 1331688 were zero
201113-00:43:09,993 nipype.interface INFO:
stderr 2020-11-13T00:43:09.993623:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:43:10,10 nipype.interface INFO:
stderr 2020-11-13T00:43:10.010807:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:43:10,163 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks".
201113-00:43:10,165 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_mean".
201113-00:43:10,171 nipype.workflow INFO:
[Node] Running "WhiteMatter_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:43:14,888 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_mean".
201113-00:43:14,889 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_2mm_flirt".
201113-00:43:14,896 nipype.workflow INFO:
[Node] Running "WhiteMatter_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:43:15,615 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt".
201113-00:43:15,616 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_merge_masks".
201113-00:43:15,622 nipype.workflow INFO:
[Node] Running "WhiteMatter_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:43:15,850 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks".
201113-00:43:15,852 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks".
201113-00:43:15,859 nipype.workflow INFO:
[Node] Running "WhiteMatter_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:43:16,108 nipype.interface INFO:
stderr 2020-11-13T00:43:16.108471:++ no -frac option: defaulting to -union
201113-00:43:16,108 nipype.interface INFO:
stderr 2020-11-13T00:43:16.108823:++ processing 1 input dataset(s), NN=2...
201113-00:43:16,109 nipype.interface INFO:
stderr 2020-11-13T00:43:16.108987:++ padding all datasets by 0 (for dilations)
201113-00:43:16,140 nipype.interface INFO:
stderr 2020-11-13T00:43:16.140303:++ frac 0 over 1 volumes gives min count 0
201113-00:43:16,141 nipype.interface INFO:
stderr 2020-11-13T00:43:16.141703:++ voxel limits: 0 clipped, 6024 survived, 1331688 were zero
201113-00:43:16,141 nipype.interface INFO:
stderr 2020-11-13T00:43:16.141875:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:43:16,158 nipype.interface INFO:
stderr 2020-11-13T00:43:16.158422:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:43:16,309 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks".
201113-00:43:16,311 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_mean".
201113-00:43:16,319 nipype.workflow INFO:
[Node] Running "WhiteMatter_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:43:20,617 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_mean".
201113-00:43:20,618 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_2mm_flirt".
201113-00:43:20,627 nipype.workflow INFO:
[Node] Running "WhiteMatter_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:43:21,339 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt".
201113-00:43:21,341 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_merge_masks".
201113-00:43:21,345 nipype.workflow INFO:
[Node] Running "WhiteMatter_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:43:21,571 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks".
201113-00:43:21,573 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks".
201113-00:43:21,579 nipype.workflow INFO:
[Node] Running "WhiteMatter_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:43:21,829 nipype.interface INFO:
stderr 2020-11-13T00:43:21.829314:++ no -frac option: defaulting to -union
201113-00:43:21,829 nipype.interface INFO:
stderr 2020-11-13T00:43:21.829668:++ processing 1 input dataset(s), NN=2...
201113-00:43:21,829 nipype.interface INFO:
stderr 2020-11-13T00:43:21.829834:++ padding all datasets by 0 (for dilations)
201113-00:43:21,861 nipype.interface INFO:
stderr 2020-11-13T00:43:21.861460:++ frac 0 over 1 volumes gives min count 0
201113-00:43:21,862 nipype.interface INFO:
stderr 2020-11-13T00:43:21.862865:++ voxel limits: 0 clipped, 6024 survived, 1331688 were zero
201113-00:43:21,863 nipype.interface INFO:
stderr 2020-11-13T00:43:21.863045:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:43:21,879 nipype.interface INFO:
stderr 2020-11-13T00:43:21.879875:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:43:22,36 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks".
201113-00:43:22,37 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_mean".
201113-00:43:22,43 nipype.workflow INFO:
[Node] Running "WhiteMatter_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:43:26,383 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_mean".
201113-00:43:26,384 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_2mm_flirt".
201113-00:43:26,391 nipype.workflow INFO:
[Node] Running "WhiteMatter_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/WM/erosion_segmentmap_WM/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:43:27,101 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_2mm_flirt".
201113-00:43:27,103 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_merge_masks".
201113-00:43:27,107 nipype.workflow INFO:
[Node] Running "WhiteMatter_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:43:27,331 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_merge_masks".
201113-00:43:27,333 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks".
201113-00:43:27,339 nipype.workflow INFO:
[Node] Running "WhiteMatter_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:43:27,588 nipype.interface INFO:
stderr 2020-11-13T00:43:27.588249:++ no -frac option: defaulting to -union
201113-00:43:27,588 nipype.interface INFO:
stderr 2020-11-13T00:43:27.588597:++ processing 1 input dataset(s), NN=2...
201113-00:43:27,588 nipype.interface INFO:
stderr 2020-11-13T00:43:27.588759:++ padding all datasets by 0 (for dilations)
201113-00:43:27,619 nipype.interface INFO:
stderr 2020-11-13T00:43:27.619427:++ frac 0 over 1 volumes gives min count 0
201113-00:43:27,620 nipype.interface INFO:
stderr 2020-11-13T00:43:27.620845:++ voxel limits: 0 clipped, 6024 survived, 1331688 were zero
201113-00:43:27,621 nipype.interface INFO:
stderr 2020-11-13T00:43:27.621015:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:43:27,637 nipype.interface INFO:
stderr 2020-11-13T00:43:27.637054:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:43:27,794 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_union_masks".
201113-00:43:27,796 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_mean".
201113-00:43:27,802 nipype.workflow INFO:
[Node] Running "WhiteMatter_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/WhiteMatter_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:43:32,102 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.WhiteMatter_mean".
201113-00:43:32,103 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_csf_gm_wm_0.resample_o_wm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_csf_gm_wm_0/resample_o_wm".
201113-00:43:32,107 nipype.workflow INFO:
[Node] Running "resample_o_wm" ("CPAC.utils.interfaces.function.Function")
201113-00:43:32,818 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_csf_gm_wm_0.resample_o_wm".
201113-00:43:32,819 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_anatomical_wm_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/sinker_0_anatomical_wm_mask".
201113-00:43:32,826 nipype.workflow INFO:
[Node] Running "sinker_0_anatomical_wm_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:43:33,57 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_anatomical_wm_mask".
201113-00:43:33,58 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.seg_preproc_0.CSF.threshold_segmentmap_CSF" in "/outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/CSF/threshold_segmentmap_CSF".
201113-00:43:33,65 nipype.workflow INFO:
[Node] Running "threshold_segmentmap_CSF" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/segment/segment_prob_0.nii.gz -thr 0.950000 /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/CSF/threshold_segmentmap_CSF/segment_prob_0_maths.nii.gz
201113-00:43:34,33 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.seg_preproc_0.CSF.threshold_segmentmap_CSF".
201113-00:43:34,34 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.seg_preproc_0.CSF.binarize_CSF" in "/outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/CSF/binarize_CSF".
201113-00:43:34,41 nipype.workflow INFO:
[Node] Running "binarize_CSF" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/CSF/threshold_segmentmap_CSF/segment_prob_0_maths.nii.gz -bin /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/CSF/binarize_CSF/segment_prob_0_maths_maths.nii.gz
201113-00:43:34,958 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.seg_preproc_0.CSF.binarize_CSF".
201113-00:43:34,959 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.erode_skullstrip_brain_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/erode_skullstrip_brain_mask".
201113-00:43:34,965 nipype.workflow INFO:
[Node] Running "erode_skullstrip_brain_mask" ("nipype.interfaces.utility.wrappers.Function")
201113-00:43:36,95 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.erode_skullstrip_brain_mask".
201113-00:43:36,96 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.seg_preproc_0.CSF.erode_skullstrip_mask_CSF" in "/outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/CSF/erode_skullstrip_mask_CSF".
201113-00:43:36,102 nipype.workflow INFO:
[Node] Running "erode_skullstrip_mask_CSF" ("nipype.interfaces.utility.wrappers.Function")
201113-00:43:37,227 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.seg_preproc_0.CSF.erode_skullstrip_mask_CSF".
201113-00:43:37,229 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.seg_preproc_0.CSF.erosion_segmentmap_CSF" in "/outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF".
201113-00:43:37,234 nipype.workflow INFO:
[Node] Running "erosion_segmentmap_CSF" ("nipype.interfaces.utility.wrappers.Function")
201113-00:43:37,773 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.seg_preproc_0.CSF.erosion_segmentmap_CSF".
201113-00:43:37,774 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_2mm_flirt".
201113-00:43:37,783 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:43:38,515 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt".
201113-00:43:38,516 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_merge_masks".
201113-00:43:38,520 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:43:38,749 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks".
201113-00:43:38,751 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks".
201113-00:43:38,758 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:43:39,7 nipype.interface INFO:
stderr 2020-11-13T00:43:39.007418:++ no -frac option: defaulting to -union
201113-00:43:39,7 nipype.interface INFO:
stderr 2020-11-13T00:43:39.007763:++ processing 1 input dataset(s), NN=2...
201113-00:43:39,7 nipype.interface INFO:
stderr 2020-11-13T00:43:39.007922:++ padding all datasets by 0 (for dilations)
201113-00:43:39,38 nipype.interface INFO:
stderr 2020-11-13T00:43:39.038594:++ frac 0 over 1 volumes gives min count 0
201113-00:43:39,39 nipype.interface INFO:
stderr 2020-11-13T00:43:39.039957:++ voxel limits: 0 clipped, 2372 survived, 1335340 were zero
201113-00:43:39,40 nipype.interface INFO:
stderr 2020-11-13T00:43:39.040137:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:43:39,54 nipype.interface INFO:
stderr 2020-11-13T00:43:39.054924:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:43:39,216 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks".
201113-00:43:39,218 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_mean".
201113-00:43:39,224 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:43:42,608 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean".
201113-00:43:42,610 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.build_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors".
201113-00:43:42,649 nipype.workflow INFO:
[Node] Running "build_nuisance_regressors" ("CPAC.utils.interfaces.function.Function")
201113-00:43:42,899 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.build_nuisance_regressors".
201113-00:43:42,901 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_before-filt_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:43:42,910 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_before-filt_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -mask /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
201113-00:43:43,297 nipype.interface INFO:
stderr 2020-11-13T00:43:43.297734:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:43:43,298 nipype.interface INFO:
stderr 2020-11-13T00:43:43.298120:++ Authored by: Cox the Algebraic (Linear)
201113-00:43:43,634 nipype.interface INFO:
stderr 2020-11-13T00:43:43.634004:++ Setting up regressors
201113-00:43:43,634 nipype.interface INFO:
stderr 2020-11-13T00:43:43.634325:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:43:43,634 nipype.interface INFO:
stderr 2020-11-13T00:43:43.634474: + -- 36 other fixed ort regressors
201113-00:43:43,634 nipype.interface INFO:
stderr 2020-11-13T00:43:43.634615:++ 99 retained time points MINUS 39 regressors ==> 60 D.O.F. left
201113-00:43:43,635 nipype.interface INFO:
stderr 2020-11-13T00:43:43.635137:++ 38659 voxels in the spatial mask
201113-00:43:43,635 nipype.interface INFO:
stderr 2020-11-13T00:43:43.635304:++ Compute pseudo-inverse of fixed orts
201113-00:43:43,637 nipype.interface INFO:
stderr 2020-11-13T00:43:43.637641:++ Loading dataset
201113-00:43:43,673 nipype.interface INFO:
stderr 2020-11-13T00:43:43.673310:++ Starting project-orization
201113-00:43:43,922 nipype.interface INFO:
stderr 2020-11-13T00:43:43.922254:++ Convert results to output dataset
201113-00:43:44,986 nipype.interface INFO:
stderr 2020-11-13T00:43:44.986600:++ Output dataset ./residuals.nii.gz
201113-00:43:44,986 nipype.interface INFO:
stderr 2020-11-13T00:43:44.986899:++ ===== clock time = 1s 689ms
201113-00:43:45,152 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression".
201113-00:43:45,154 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.frequency_filtering_0_0.frequency_filter" in "/outputs/tmp/resting_preproc_sub-071_ses-1/frequency_filtering_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter".
201113-00:43:45,162 nipype.workflow INFO:
[Node] Running "frequency_filter" ("CPAC.utils.interfaces.function.Function")
201113-00:43:50,404 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.frequency_filtering_0_0.frequency_filter".
201113-00:43:50,406 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:43:50,416 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/bandpassed_demeaned_filtered.nii.gz -mask /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-071_ses-1/frequency_filtering_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/regressor_bandpassed_demeaned_filtered.1D -polort 2 -prefix residuals.nii.gz
201113-00:43:50,663 nipype.interface INFO:
stderr 2020-11-13T00:43:50.663759:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:43:50,664 nipype.interface INFO:
stderr 2020-11-13T00:43:50.664119:++ Authored by: Cox the Algebraic (Linear)
201113-00:43:50,972 nipype.interface INFO:
stderr 2020-11-13T00:43:50.972026:++ Setting up regressors
201113-00:43:50,972 nipype.interface INFO:
stderr 2020-11-13T00:43:50.972580:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:43:50,972 nipype.interface INFO:
stderr 2020-11-13T00:43:50.972729: + -- 36 other fixed ort regressors
201113-00:43:50,972 nipype.interface INFO:
stderr 2020-11-13T00:43:50.972870:++ 99 retained time points MINUS 39 regressors ==> 60 D.O.F. left
201113-00:43:50,973 nipype.interface INFO:
stderr 2020-11-13T00:43:50.973382:++ 38659 voxels in the spatial mask
201113-00:43:50,973 nipype.interface INFO:
stderr 2020-11-13T00:43:50.973549:++ Compute pseudo-inverse of fixed orts
201113-00:43:50,974 nipype.interface INFO:
stderr 2020-11-13T00:43:50.974729:++ Loading dataset
201113-00:43:51,10 nipype.interface INFO:
stderr 2020-11-13T00:43:51.010683:++ Starting project-orization
201113-00:43:51,256 nipype.interface INFO:
stderr 2020-11-13T00:43:51.256192:++ Convert results to output dataset
201113-00:43:52,394 nipype.interface INFO:
stderr 2020-11-13T00:43:52.394356:++ Output dataset ./residuals.nii.gz
201113-00:43:52,394 nipype.interface INFO:
stderr 2020-11-13T00:43:52.394789:++ ===== clock time = 1s 731ms
201113-00:43:52,577 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression".
201113-00:43:52,579 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_residuals" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_residuals".
201113-00:43:52,587 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_residuals" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:43:52,817 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_residuals".
201113-00:43:52,818 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_freq_filtered" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_freq_filtered".
201113-00:43:52,825 nipype.workflow INFO:
[Node] Running "sinker_0_functional_freq_filtered" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:43:53,52 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_freq_filtered".
201113-00:43:53,54 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_regressors".
201113-00:43:53,61 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_regressors" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:43:53,291 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_regressors".
201113-00:43:53,292 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_2mm_flirt".
201113-00:43:53,300 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:43:54,21 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt".
201113-00:43:54,23 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_merge_masks".
201113-00:43:54,27 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:43:54,257 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks".
201113-00:43:54,258 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks".
201113-00:43:54,264 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:43:54,512 nipype.interface INFO:
stderr 2020-11-13T00:43:54.512026:++ no -frac option: defaulting to -union
201113-00:43:54,512 nipype.interface INFO:
stderr 2020-11-13T00:43:54.512614:++ processing 1 input dataset(s), NN=2...
201113-00:43:54,512 nipype.interface INFO:
stderr 2020-11-13T00:43:54.512826:++ padding all datasets by 0 (for dilations)
201113-00:43:54,545 nipype.interface INFO:
stderr 2020-11-13T00:43:54.545407:++ frac 0 over 1 volumes gives min count 0
201113-00:43:54,546 nipype.interface INFO:
stderr 2020-11-13T00:43:54.546767:++ voxel limits: 0 clipped, 2372 survived, 1335340 were zero
201113-00:43:54,546 nipype.interface INFO:
stderr 2020-11-13T00:43:54.546932:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:43:54,561 nipype.interface INFO:
stderr 2020-11-13T00:43:54.561166:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:43:54,716 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks".
201113-00:43:54,717 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_mean".
201113-00:43:54,723 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:43:58,107 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean".
201113-00:43:58,108 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.build_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors".
201113-00:43:58,137 nipype.workflow INFO:
[Node] Running "build_nuisance_regressors" ("CPAC.utils.interfaces.function.Function")
201113-00:43:58,392 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.build_nuisance_regressors".
201113-00:43:58,394 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_before-filt_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:43:58,422 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_before-filt_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -mask /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
201113-00:43:58,669 nipype.interface INFO:
stderr 2020-11-13T00:43:58.669705:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:43:58,670 nipype.interface INFO:
stderr 2020-11-13T00:43:58.670062:++ Authored by: Cox the Algebraic (Linear)
201113-00:43:59,17 nipype.interface INFO:
stderr 2020-11-13T00:43:59.017133:++ Setting up regressors
201113-00:43:59,17 nipype.interface INFO:
stderr 2020-11-13T00:43:59.017450:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:43:59,17 nipype.interface INFO:
stderr 2020-11-13T00:43:59.017600: + -- 36 other fixed ort regressors
201113-00:43:59,17 nipype.interface INFO:
stderr 2020-11-13T00:43:59.017740:++ 99 retained time points MINUS 39 regressors ==> 60 D.O.F. left
201113-00:43:59,18 nipype.interface INFO:
stderr 2020-11-13T00:43:59.018263:++ 38687 voxels in the spatial mask
201113-00:43:59,18 nipype.interface INFO:
stderr 2020-11-13T00:43:59.018429:++ Compute pseudo-inverse of fixed orts
201113-00:43:59,19 nipype.interface INFO:
stderr 2020-11-13T00:43:59.019669:++ Loading dataset
201113-00:43:59,55 nipype.interface INFO:
stderr 2020-11-13T00:43:59.055592:++ Starting project-orization
201113-00:43:59,301 nipype.interface INFO:
stderr 2020-11-13T00:43:59.301941:++ Convert results to output dataset
201113-00:44:00,367 nipype.interface INFO:
stderr 2020-11-13T00:44:00.367310:++ Output dataset ./residuals.nii.gz
201113-00:44:00,367 nipype.interface INFO:
stderr 2020-11-13T00:44:00.367638:++ ===== clock time = 1s 698ms
201113-00:44:00,528 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression".
201113-00:44:00,530 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.frequency_filtering_0_0.frequency_filter" in "/outputs/tmp/resting_preproc_sub-071_ses-1/frequency_filtering_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter".
201113-00:44:00,537 nipype.workflow INFO:
[Node] Running "frequency_filter" ("CPAC.utils.interfaces.function.Function")
201113-00:44:05,882 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.frequency_filtering_0_0.frequency_filter".
201113-00:44:05,884 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:44:05,891 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/bandpassed_demeaned_filtered.nii.gz -mask /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-071_ses-1/frequency_filtering_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/regressor_bandpassed_demeaned_filtered.1D -polort 2 -prefix residuals.nii.gz
201113-00:44:06,140 nipype.interface INFO:
stderr 2020-11-13T00:44:06.140846:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:44:06,141 nipype.interface INFO:
stderr 2020-11-13T00:44:06.141221:++ Authored by: Cox the Algebraic (Linear)
201113-00:44:06,443 nipype.interface INFO:
stderr 2020-11-13T00:44:06.442964:++ Setting up regressors
201113-00:44:06,443 nipype.interface INFO:
stderr 2020-11-13T00:44:06.443297:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:44:06,443 nipype.interface INFO:
stderr 2020-11-13T00:44:06.443445: + -- 36 other fixed ort regressors
201113-00:44:06,443 nipype.interface INFO:
stderr 2020-11-13T00:44:06.443584:++ 99 retained time points MINUS 39 regressors ==> 60 D.O.F. left
201113-00:44:06,444 nipype.interface INFO:
stderr 2020-11-13T00:44:06.444105:++ 38687 voxels in the spatial mask
201113-00:44:06,444 nipype.interface INFO:
stderr 2020-11-13T00:44:06.444270:++ Compute pseudo-inverse of fixed orts
201113-00:44:06,445 nipype.interface INFO:
stderr 2020-11-13T00:44:06.445471:++ Loading dataset
201113-00:44:06,481 nipype.interface INFO:
stderr 2020-11-13T00:44:06.481530:++ Starting project-orization
201113-00:44:06,730 nipype.interface INFO:
stderr 2020-11-13T00:44:06.730049:++ Convert results to output dataset
201113-00:44:07,863 nipype.interface INFO:
stderr 2020-11-13T00:44:07.863266:++ Output dataset ./residuals.nii.gz
201113-00:44:07,863 nipype.interface INFO:
stderr 2020-11-13T00:44:07.863724:++ ===== clock time = 1s 722ms
201113-00:44:08,47 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression".
201113-00:44:08,49 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_residuals" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_residuals".
201113-00:44:08,57 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_residuals" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:44:08,282 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_residuals".
201113-00:44:08,284 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_freq_filtered" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_freq_filtered".
201113-00:44:08,290 nipype.workflow INFO:
[Node] Running "sinker_0_functional_freq_filtered" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:44:08,519 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_freq_filtered".
201113-00:44:08,520 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_regressors".
201113-00:44:08,527 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_regressors" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:44:08,758 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_regressors".
201113-00:44:08,760 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_2mm_flirt".
201113-00:44:08,768 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:44:09,496 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt".
201113-00:44:09,497 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_merge_masks".
201113-00:44:09,502 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:44:09,731 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks".
201113-00:44:09,732 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks".
201113-00:44:09,739 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:44:09,987 nipype.interface INFO:
stderr 2020-11-13T00:44:09.987591:++ no -frac option: defaulting to -union
201113-00:44:09,987 nipype.interface INFO:
stderr 2020-11-13T00:44:09.987939:++ processing 1 input dataset(s), NN=2...
201113-00:44:09,988 nipype.interface INFO:
stderr 2020-11-13T00:44:09.988114:++ padding all datasets by 0 (for dilations)
201113-00:44:10,18 nipype.interface INFO:
stderr 2020-11-13T00:44:10.018902:++ frac 0 over 1 volumes gives min count 0
201113-00:44:10,20 nipype.interface INFO:
stderr 2020-11-13T00:44:10.020320:++ voxel limits: 0 clipped, 2372 survived, 1335340 were zero
201113-00:44:10,20 nipype.interface INFO:
stderr 2020-11-13T00:44:10.020525:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:44:10,35 nipype.interface INFO:
stderr 2020-11-13T00:44:10.035916:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:44:10,185 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks".
201113-00:44:10,186 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_mean".
201113-00:44:10,192 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:44:13,574 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean".
201113-00:44:13,576 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.build_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors".
201113-00:44:13,624 nipype.workflow INFO:
[Node] Running "build_nuisance_regressors" ("CPAC.utils.interfaces.function.Function")
201113-00:44:13,897 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.build_nuisance_regressors".
201113-00:44:13,899 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_before-filt_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:44:13,926 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_before-filt_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -mask /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
201113-00:44:14,176 nipype.interface INFO:
stderr 2020-11-13T00:44:14.176580:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:44:14,176 nipype.interface INFO:
stderr 2020-11-13T00:44:14.176945:++ Authored by: Cox the Algebraic (Linear)
201113-00:44:14,507 nipype.interface INFO:
stderr 2020-11-13T00:44:14.507726:++ Setting up regressors
201113-00:44:14,508 nipype.interface INFO:
stderr 2020-11-13T00:44:14.508045:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:44:14,508 nipype.interface INFO:
stderr 2020-11-13T00:44:14.508197: + -- 36 other fixed ort regressors
201113-00:44:14,508 nipype.interface INFO:
stderr 2020-11-13T00:44:14.508335:++ 99 retained time points MINUS 39 regressors ==> 60 D.O.F. left
201113-00:44:14,508 nipype.interface INFO:
stderr 2020-11-13T00:44:14.508870:++ 38664 voxels in the spatial mask
201113-00:44:14,509 nipype.interface INFO:
stderr 2020-11-13T00:44:14.509041:++ Compute pseudo-inverse of fixed orts
201113-00:44:14,510 nipype.interface INFO:
stderr 2020-11-13T00:44:14.510303:++ Loading dataset
201113-00:44:14,546 nipype.interface INFO:
stderr 2020-11-13T00:44:14.546226:++ Starting project-orization
201113-00:44:14,791 nipype.interface INFO:
stderr 2020-11-13T00:44:14.791544:++ Convert results to output dataset
201113-00:44:15,835 nipype.interface INFO:
stderr 2020-11-13T00:44:15.835657:++ Output dataset ./residuals.nii.gz
201113-00:44:15,835 nipype.interface INFO:
stderr 2020-11-13T00:44:15.835954:++ ===== clock time = 1s 659ms
201113-00:44:15,994 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression".
201113-00:44:15,996 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.frequency_filtering_0_0.frequency_filter" in "/outputs/tmp/resting_preproc_sub-071_ses-1/frequency_filtering_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter".
201113-00:44:16,3 nipype.workflow INFO:
[Node] Running "frequency_filter" ("CPAC.utils.interfaces.function.Function")
201113-00:44:21,341 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.frequency_filtering_0_0.frequency_filter".
201113-00:44:21,343 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:44:21,352 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/bandpassed_demeaned_filtered.nii.gz -mask /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-071_ses-1/frequency_filtering_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/regressor_bandpassed_demeaned_filtered.1D -polort 2 -prefix residuals.nii.gz
201113-00:44:21,607 nipype.interface INFO:
stderr 2020-11-13T00:44:21.607157:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:44:21,607 nipype.interface INFO:
stderr 2020-11-13T00:44:21.607577:++ Authored by: Cox the Algebraic (Linear)
201113-00:44:21,911 nipype.interface INFO:
stderr 2020-11-13T00:44:21.911669:++ Setting up regressors
201113-00:44:21,912 nipype.interface INFO:
stderr 2020-11-13T00:44:21.911989:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:44:21,912 nipype.interface INFO:
stderr 2020-11-13T00:44:21.912150: + -- 36 other fixed ort regressors
201113-00:44:21,912 nipype.interface INFO:
stderr 2020-11-13T00:44:21.912292:++ 99 retained time points MINUS 39 regressors ==> 60 D.O.F. left
201113-00:44:21,912 nipype.interface INFO:
stderr 2020-11-13T00:44:21.912803:++ 38664 voxels in the spatial mask
201113-00:44:21,912 nipype.interface INFO:
stderr 2020-11-13T00:44:21.912970:++ Compute pseudo-inverse of fixed orts
201113-00:44:21,914 nipype.interface INFO:
stderr 2020-11-13T00:44:21.914187:++ Loading dataset
201113-00:44:21,950 nipype.interface INFO:
stderr 2020-11-13T00:44:21.950346:++ Starting project-orization
201113-00:44:22,195 nipype.interface INFO:
stderr 2020-11-13T00:44:22.195697:++ Convert results to output dataset
201113-00:44:23,308 nipype.interface INFO:
stderr 2020-11-13T00:44:23.308239:++ Output dataset ./residuals.nii.gz
201113-00:44:23,308 nipype.interface INFO:
stderr 2020-11-13T00:44:23.308589:++ ===== clock time = 1s 701ms
201113-00:44:23,492 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression".
201113-00:44:23,494 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_residuals" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_residuals".
201113-00:44:23,502 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_residuals" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:44:23,733 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_residuals".
201113-00:44:23,735 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_freq_filtered" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_freq_filtered".
201113-00:44:23,741 nipype.workflow INFO:
[Node] Running "sinker_0_functional_freq_filtered" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:44:23,970 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_freq_filtered".
201113-00:44:23,972 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_regressors".
201113-00:44:23,979 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_regressors" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:44:24,210 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_regressors".
201113-00:44:24,212 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_2mm_flirt".
201113-00:44:24,219 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:44:24,944 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt".
201113-00:44:24,946 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_merge_masks".
201113-00:44:24,952 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:44:25,180 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks".
201113-00:44:25,182 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks".
201113-00:44:25,187 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:44:25,443 nipype.interface INFO:
stderr 2020-11-13T00:44:25.443655:++ no -frac option: defaulting to -union
201113-00:44:25,444 nipype.interface INFO:
stderr 2020-11-13T00:44:25.444004:++ processing 1 input dataset(s), NN=2...
201113-00:44:25,444 nipype.interface INFO:
stderr 2020-11-13T00:44:25.444460:++ padding all datasets by 0 (for dilations)
201113-00:44:25,481 nipype.interface INFO:
stderr 2020-11-13T00:44:25.481228:++ frac 0 over 1 volumes gives min count 0
201113-00:44:25,482 nipype.interface INFO:
stderr 2020-11-13T00:44:25.482868:++ voxel limits: 0 clipped, 2372 survived, 1335340 were zero
201113-00:44:25,483 nipype.interface INFO:
stderr 2020-11-13T00:44:25.483052:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:44:25,499 nipype.interface INFO:
stderr 2020-11-13T00:44:25.499533:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:44:25,655 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks".
201113-00:44:25,656 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_mean".
201113-00:44:25,662 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:44:30,378 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean".
201113-00:44:30,379 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.build_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors".
201113-00:44:30,424 nipype.workflow INFO:
[Node] Running "build_nuisance_regressors" ("CPAC.utils.interfaces.function.Function")
201113-00:44:30,686 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.build_nuisance_regressors".
201113-00:44:30,687 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_before-filt_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:44:30,698 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_before-filt_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -mask /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
201113-00:44:30,948 nipype.interface INFO:
stderr 2020-11-13T00:44:30.948489:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:44:30,948 nipype.interface INFO:
stderr 2020-11-13T00:44:30.948845:++ Authored by: Cox the Algebraic (Linear)
201113-00:44:31,431 nipype.interface INFO:
stderr 2020-11-13T00:44:31.431789:++ Setting up regressors
201113-00:44:31,432 nipype.interface INFO:
stderr 2020-11-13T00:44:31.432119:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:44:31,432 nipype.interface INFO:
stderr 2020-11-13T00:44:31.432271: + -- 36 other fixed ort regressors
201113-00:44:31,432 nipype.interface INFO:
stderr 2020-11-13T00:44:31.432412:++ 143 retained time points MINUS 39 regressors ==> 104 D.O.F. left
201113-00:44:31,432 nipype.interface INFO:
stderr 2020-11-13T00:44:31.432912:++ 38353 voxels in the spatial mask
201113-00:44:31,433 nipype.interface INFO:
stderr 2020-11-13T00:44:31.433099:++ Compute pseudo-inverse of fixed orts
201113-00:44:31,434 nipype.interface INFO:
stderr 2020-11-13T00:44:31.434762:++ Loading dataset
201113-00:44:31,492 nipype.interface INFO:
stderr 2020-11-13T00:44:31.492666:++ Starting project-orization
201113-00:44:31,833 nipype.interface INFO:
stderr 2020-11-13T00:44:31.833222:++ Convert results to output dataset
201113-00:44:33,355 nipype.interface INFO:
stderr 2020-11-13T00:44:33.355714:++ Output dataset ./residuals.nii.gz
201113-00:44:33,356 nipype.interface INFO:
stderr 2020-11-13T00:44:33.355999:++ ===== clock time = 2s 407ms
201113-00:44:33,515 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression".
201113-00:44:33,517 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.frequency_filtering_0_0.frequency_filter" in "/outputs/tmp/resting_preproc_sub-071_ses-1/frequency_filtering_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter".
201113-00:44:33,524 nipype.workflow INFO:
[Node] Running "frequency_filter" ("CPAC.utils.interfaces.function.Function")
201113-00:44:39,548 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.frequency_filtering_0_0.frequency_filter".
201113-00:44:39,549 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:44:39,559 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/bandpassed_demeaned_filtered.nii.gz -mask /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-071_ses-1/frequency_filtering_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/regressor_bandpassed_demeaned_filtered.1D -polort 2 -prefix residuals.nii.gz
201113-00:44:39,819 nipype.interface INFO:
stderr 2020-11-13T00:44:39.818997:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:44:39,819 nipype.interface INFO:
stderr 2020-11-13T00:44:39.819507:++ Authored by: Cox the Algebraic (Linear)
201113-00:44:40,254 nipype.interface INFO:
stderr 2020-11-13T00:44:40.254879:++ Setting up regressors
201113-00:44:40,255 nipype.interface INFO:
stderr 2020-11-13T00:44:40.255205:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:44:40,255 nipype.interface INFO:
stderr 2020-11-13T00:44:40.255355: + -- 36 other fixed ort regressors
201113-00:44:40,255 nipype.interface INFO:
stderr 2020-11-13T00:44:40.255494:++ 143 retained time points MINUS 39 regressors ==> 104 D.O.F. left
201113-00:44:40,256 nipype.interface INFO:
stderr 2020-11-13T00:44:40.256004:++ 38353 voxels in the spatial mask
201113-00:44:40,256 nipype.interface INFO:
stderr 2020-11-13T00:44:40.256189:++ Compute pseudo-inverse of fixed orts
201113-00:44:40,257 nipype.interface INFO:
stderr 2020-11-13T00:44:40.257808:++ Loading dataset
201113-00:44:40,317 nipype.interface INFO:
stderr 2020-11-13T00:44:40.317563:++ Starting project-orization
201113-00:44:40,656 nipype.interface INFO:
stderr 2020-11-13T00:44:40.656512:++ Convert results to output dataset
201113-00:44:42,231 nipype.interface INFO:
stderr 2020-11-13T00:44:42.231074:++ Output dataset ./residuals.nii.gz
201113-00:44:42,231 nipype.interface INFO:
stderr 2020-11-13T00:44:42.231391:++ ===== clock time = 2s 412ms
201113-00:44:42,416 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression".
201113-00:44:42,418 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_residuals" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_residuals".
201113-00:44:42,426 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_residuals" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:44:42,652 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_residuals".
201113-00:44:42,653 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_freq_filtered" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_freq_filtered".
201113-00:44:42,660 nipype.workflow INFO:
[Node] Running "sinker_0_functional_freq_filtered" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:44:42,889 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_freq_filtered".
201113-00:44:42,891 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_regressors".
201113-00:44:42,898 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_regressors" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:44:43,129 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_regressors".
201113-00:44:43,131 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_2mm_flirt".
201113-00:44:43,138 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:44:43,866 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt".
201113-00:44:43,867 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_merge_masks".
201113-00:44:43,872 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:44:44,100 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks".
201113-00:44:44,102 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks".
201113-00:44:44,107 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:44:44,362 nipype.interface INFO:
stderr 2020-11-13T00:44:44.362670:++ no -frac option: defaulting to -union
201113-00:44:44,363 nipype.interface INFO:
stderr 2020-11-13T00:44:44.363365:++ processing 1 input dataset(s), NN=2...
201113-00:44:44,363 nipype.interface INFO:
stderr 2020-11-13T00:44:44.363596:++ padding all datasets by 0 (for dilations)
201113-00:44:44,398 nipype.interface INFO:
stderr 2020-11-13T00:44:44.398938:++ frac 0 over 1 volumes gives min count 0
201113-00:44:44,400 nipype.interface INFO:
stderr 2020-11-13T00:44:44.400320:++ voxel limits: 0 clipped, 2372 survived, 1335340 were zero
201113-00:44:44,400 nipype.interface INFO:
stderr 2020-11-13T00:44:44.400505:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:44:44,415 nipype.interface INFO:
stderr 2020-11-13T00:44:44.415621:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:44:44,568 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks".
201113-00:44:44,570 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_mean".
201113-00:44:44,576 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:44:48,906 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean".
201113-00:44:48,908 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.build_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors".
201113-00:44:48,960 nipype.workflow INFO:
[Node] Running "build_nuisance_regressors" ("CPAC.utils.interfaces.function.Function")
201113-00:44:49,235 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.build_nuisance_regressors".
201113-00:44:49,237 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_before-filt_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:44:49,265 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_before-filt_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -mask /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
201113-00:44:49,520 nipype.interface INFO:
stderr 2020-11-13T00:44:49.520240:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:44:49,520 nipype.interface INFO:
stderr 2020-11-13T00:44:49.520737:++ Authored by: Cox the Algebraic (Linear)
201113-00:44:49,971 nipype.interface INFO:
stderr 2020-11-13T00:44:49.971827:++ Setting up regressors
201113-00:44:49,972 nipype.interface INFO:
stderr 2020-11-13T00:44:49.972169:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:44:49,972 nipype.interface INFO:
stderr 2020-11-13T00:44:49.972321: + -- 36 other fixed ort regressors
201113-00:44:49,972 nipype.interface INFO:
stderr 2020-11-13T00:44:49.972464:++ 130 retained time points MINUS 39 regressors ==> 91 D.O.F. left
201113-00:44:49,972 nipype.interface INFO:
stderr 2020-11-13T00:44:49.972977:++ 38535 voxels in the spatial mask
201113-00:44:49,973 nipype.interface INFO:
stderr 2020-11-13T00:44:49.973155:++ Compute pseudo-inverse of fixed orts
201113-00:44:49,974 nipype.interface INFO:
stderr 2020-11-13T00:44:49.974696:++ Loading dataset
201113-00:44:50,25 nipype.interface INFO:
stderr 2020-11-13T00:44:50.025059:++ Starting project-orization
201113-00:44:50,337 nipype.interface INFO:
stderr 2020-11-13T00:44:50.337059:++ Convert results to output dataset
201113-00:44:51,727 nipype.interface INFO:
stderr 2020-11-13T00:44:51.727603:++ Output dataset ./residuals.nii.gz
201113-00:44:51,727 nipype.interface INFO:
stderr 2020-11-13T00:44:51.727920:++ ===== clock time = 2s 208ms
201113-00:44:51,886 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression".
201113-00:44:51,887 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.frequency_filtering_0_0.frequency_filter" in "/outputs/tmp/resting_preproc_sub-071_ses-1/frequency_filtering_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter".
201113-00:44:51,893 nipype.workflow INFO:
[Node] Running "frequency_filter" ("CPAC.utils.interfaces.function.Function")
201113-00:44:57,697 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.frequency_filtering_0_0.frequency_filter".
201113-00:44:57,698 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:44:57,707 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/bandpassed_demeaned_filtered.nii.gz -mask /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-071_ses-1/frequency_filtering_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/regressor_bandpassed_demeaned_filtered.1D -polort 2 -prefix residuals.nii.gz
201113-00:44:57,958 nipype.interface INFO:
stderr 2020-11-13T00:44:57.957899:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:44:57,958 nipype.interface INFO:
stderr 2020-11-13T00:44:57.958392:++ Authored by: Cox the Algebraic (Linear)
201113-00:44:58,351 nipype.interface INFO:
stderr 2020-11-13T00:44:58.351439:++ Setting up regressors
201113-00:44:58,351 nipype.interface INFO:
stderr 2020-11-13T00:44:58.351766:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:44:58,351 nipype.interface INFO:
stderr 2020-11-13T00:44:58.351914: + -- 36 other fixed ort regressors
201113-00:44:58,352 nipype.interface INFO:
stderr 2020-11-13T00:44:58.352066:++ 130 retained time points MINUS 39 regressors ==> 91 D.O.F. left
201113-00:44:58,352 nipype.interface INFO:
stderr 2020-11-13T00:44:58.352583:++ 38535 voxels in the spatial mask
201113-00:44:58,352 nipype.interface INFO:
stderr 2020-11-13T00:44:58.352753:++ Compute pseudo-inverse of fixed orts
201113-00:44:58,354 nipype.interface INFO:
stderr 2020-11-13T00:44:58.354236:++ Loading dataset
201113-00:44:58,404 nipype.interface INFO:
stderr 2020-11-13T00:44:58.404174:++ Starting project-orization
201113-00:44:58,716 nipype.interface INFO:
stderr 2020-11-13T00:44:58.716121:++ Convert results to output dataset
201113-00:45:00,169 nipype.interface INFO:
stderr 2020-11-13T00:45:00.169099:++ Output dataset ./residuals.nii.gz
201113-00:45:00,169 nipype.interface INFO:
stderr 2020-11-13T00:45:00.169435:++ ===== clock time = 2s 211ms
201113-00:45:00,354 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression".
201113-00:45:00,356 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_residuals" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_residuals".
201113-00:45:00,364 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_residuals" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:45:00,591 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_residuals".
201113-00:45:00,592 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_freq_filtered" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_freq_filtered".
201113-00:45:00,599 nipype.workflow INFO:
[Node] Running "sinker_0_functional_freq_filtered" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:45:00,829 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_freq_filtered".
201113-00:45:00,831 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_regressors".
201113-00:45:00,839 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_regressors" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:45:01,72 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_regressors".
201113-00:45:01,74 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_2mm_flirt".
201113-00:45:01,81 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:45:01,807 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt".
201113-00:45:01,808 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_merge_masks".
201113-00:45:01,812 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:45:02,39 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks".
201113-00:45:02,41 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks".
201113-00:45:02,48 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:45:02,295 nipype.interface INFO:
stderr 2020-11-13T00:45:02.295567:++ no -frac option: defaulting to -union
201113-00:45:02,295 nipype.interface INFO:
stderr 2020-11-13T00:45:02.295903:++ processing 1 input dataset(s), NN=2...
201113-00:45:02,296 nipype.interface INFO:
stderr 2020-11-13T00:45:02.296065:++ padding all datasets by 0 (for dilations)
201113-00:45:02,327 nipype.interface INFO:
stderr 2020-11-13T00:45:02.327009:++ frac 0 over 1 volumes gives min count 0
201113-00:45:02,328 nipype.interface INFO:
stderr 2020-11-13T00:45:02.328377:++ voxel limits: 0 clipped, 2372 survived, 1335340 were zero
201113-00:45:02,328 nipype.interface INFO:
stderr 2020-11-13T00:45:02.328540:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:45:02,342 nipype.interface INFO:
stderr 2020-11-13T00:45:02.342886:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:45:02,498 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks".
201113-00:45:02,499 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_mean".
201113-00:45:02,505 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:45:06,836 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean".
201113-00:45:06,838 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.build_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors".
201113-00:45:06,891 nipype.workflow INFO:
[Node] Running "build_nuisance_regressors" ("CPAC.utils.interfaces.function.Function")
201113-00:45:07,159 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.build_nuisance_regressors".
201113-00:45:07,161 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_before-filt_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:45:07,184 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_before-filt_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -mask /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
201113-00:45:07,433 nipype.interface INFO:
stderr 2020-11-13T00:45:07.433424:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:45:07,433 nipype.interface INFO:
stderr 2020-11-13T00:45:07.433809:++ Authored by: Cox the Algebraic (Linear)
201113-00:45:07,890 nipype.interface INFO:
stderr 2020-11-13T00:45:07.890897:++ Setting up regressors
201113-00:45:07,891 nipype.interface INFO:
stderr 2020-11-13T00:45:07.891225:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:45:07,891 nipype.interface INFO:
stderr 2020-11-13T00:45:07.891376: + -- 36 other fixed ort regressors
201113-00:45:07,891 nipype.interface INFO:
stderr 2020-11-13T00:45:07.891515:++ 130 retained time points MINUS 39 regressors ==> 91 D.O.F. left
201113-00:45:07,892 nipype.interface INFO:
stderr 2020-11-13T00:45:07.892037:++ 38724 voxels in the spatial mask
201113-00:45:07,892 nipype.interface INFO:
stderr 2020-11-13T00:45:07.892211:++ Compute pseudo-inverse of fixed orts
201113-00:45:07,893 nipype.interface INFO:
stderr 2020-11-13T00:45:07.893745:++ Loading dataset
201113-00:45:07,944 nipype.interface INFO:
stderr 2020-11-13T00:45:07.944409:++ Starting project-orization
201113-00:45:08,258 nipype.interface INFO:
stderr 2020-11-13T00:45:08.258209:++ Convert results to output dataset
201113-00:45:09,665 nipype.interface INFO:
stderr 2020-11-13T00:45:09.665719:++ Output dataset ./residuals.nii.gz
201113-00:45:09,666 nipype.interface INFO:
stderr 2020-11-13T00:45:09.666084:++ ===== clock time = 2s 232ms
201113-00:45:09,827 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression".
201113-00:45:09,829 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.frequency_filtering_0_0.frequency_filter" in "/outputs/tmp/resting_preproc_sub-071_ses-1/frequency_filtering_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter".
201113-00:45:09,835 nipype.workflow INFO:
[Node] Running "frequency_filter" ("CPAC.utils.interfaces.function.Function")
201113-00:45:15,645 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.frequency_filtering_0_0.frequency_filter".
201113-00:45:15,647 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:45:15,655 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/bandpassed_demeaned_filtered.nii.gz -mask /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-071_ses-1/frequency_filtering_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/regressor_bandpassed_demeaned_filtered.1D -polort 2 -prefix residuals.nii.gz
201113-00:45:15,907 nipype.interface INFO:
stderr 2020-11-13T00:45:15.907565:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:45:15,907 nipype.interface INFO:
stderr 2020-11-13T00:45:15.907922:++ Authored by: Cox the Algebraic (Linear)
201113-00:45:16,303 nipype.interface INFO:
stderr 2020-11-13T00:45:16.302962:++ Setting up regressors
201113-00:45:16,303 nipype.interface INFO:
stderr 2020-11-13T00:45:16.303295:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:45:16,303 nipype.interface INFO:
stderr 2020-11-13T00:45:16.303445: + -- 36 other fixed ort regressors
201113-00:45:16,303 nipype.interface INFO:
stderr 2020-11-13T00:45:16.303586:++ 130 retained time points MINUS 39 regressors ==> 91 D.O.F. left
201113-00:45:16,304 nipype.interface INFO:
stderr 2020-11-13T00:45:16.304107:++ 38724 voxels in the spatial mask
201113-00:45:16,304 nipype.interface INFO:
stderr 2020-11-13T00:45:16.304278:++ Compute pseudo-inverse of fixed orts
201113-00:45:16,305 nipype.interface INFO:
stderr 2020-11-13T00:45:16.305786:++ Loading dataset
201113-00:45:16,357 nipype.interface INFO:
stderr 2020-11-13T00:45:16.356966:++ Starting project-orization
201113-00:45:16,669 nipype.interface INFO:
stderr 2020-11-13T00:45:16.669891:++ Convert results to output dataset
201113-00:45:18,110 nipype.interface INFO:
stderr 2020-11-13T00:45:18.110146:++ Output dataset ./residuals.nii.gz
201113-00:45:18,110 nipype.interface INFO:
stderr 2020-11-13T00:45:18.110455:++ ===== clock time = 2s 203ms
201113-00:45:18,295 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression".
201113-00:45:18,297 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_residuals" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_residuals".
201113-00:45:18,305 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_residuals" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:45:18,532 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_residuals".
201113-00:45:18,533 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_freq_filtered" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_freq_filtered".
201113-00:45:18,539 nipype.workflow INFO:
[Node] Running "sinker_0_functional_freq_filtered" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:45:18,774 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_freq_filtered".
201113-00:45:18,776 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_regressors".
201113-00:45:18,783 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_regressors" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:45:19,13 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_regressors".
201113-00:45:19,15 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_2mm_flirt".
201113-00:45:19,23 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_2mm_flirt" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/CSF/erosion_segmentmap_CSF/segment_tissue_mask.nii.gz -ref /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Anatomical_2mm_flirt/sub-071_ses-1_T1w_resample_corrected_masked_xform_flirt.nii.gz -out segment_tissue_mask_flirt.nii.gz -omat segment_tissue_mask_flirt.mat -applyisoxfm 2.000000 -interp nearestneighbour
201113-00:45:19,743 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_2mm_flirt".
201113-00:45:19,745 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_merge_masks".
201113-00:45:19,749 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-00:45:19,978 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_merge_masks".
201113-00:45:19,980 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks".
201113-00:45:19,986 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix segment_tissue_mask_flirt_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt.nii.gz
201113-00:45:20,238 nipype.interface INFO:
stderr 2020-11-13T00:45:20.238927:++ no -frac option: defaulting to -union
201113-00:45:20,239 nipype.interface INFO:
stderr 2020-11-13T00:45:20.239533:++ processing 1 input dataset(s), NN=2...
201113-00:45:20,239 nipype.interface INFO:
stderr 2020-11-13T00:45:20.239713:++ padding all datasets by 0 (for dilations)
201113-00:45:20,275 nipype.interface INFO:
stderr 2020-11-13T00:45:20.275075:++ frac 0 over 1 volumes gives min count 0
201113-00:45:20,276 nipype.interface INFO:
stderr 2020-11-13T00:45:20.276444:++ voxel limits: 0 clipped, 2372 survived, 1335340 were zero
201113-00:45:20,276 nipype.interface INFO:
stderr 2020-11-13T00:45:20.276616:++ writing result segment_tissue_mask_flirt_mask.nii.gz...
201113-00:45:20,292 nipype.interface INFO:
stderr 2020-11-13T00:45:20.292052:++ Output dataset ./segment_tissue_mask_flirt_mask.nii.gz
201113-00:45:20,449 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_union_masks".
201113-00:45:20,451 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_mean".
201113-00:45:20,457 nipype.workflow INFO:
[Node] Running "CerebrospinalFluid_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/CerebrospinalFluid_union_masks/segment_tissue_mask_flirt_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/Functional_2mm_flirt/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths_flirt.nii.gz
201113-00:45:24,796 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.CerebrospinalFluid_mean".
201113-00:45:24,797 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.build_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors".
201113-00:45:24,844 nipype.workflow INFO:
[Node] Running "build_nuisance_regressors" ("CPAC.utils.interfaces.function.Function")
201113-00:45:25,123 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regressor_0_0.build_nuisance_regressors".
201113-00:45:25,126 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_before-filt_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:45:25,146 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_before-filt_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -mask /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regressor_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
201113-00:45:25,404 nipype.interface INFO:
stderr 2020-11-13T00:45:25.403927:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:45:25,404 nipype.interface INFO:
stderr 2020-11-13T00:45:25.404640:++ Authored by: Cox the Algebraic (Linear)
201113-00:45:25,856 nipype.interface INFO:
stderr 2020-11-13T00:45:25.856757:++ Setting up regressors
201113-00:45:25,857 nipype.interface INFO:
stderr 2020-11-13T00:45:25.857082:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:45:25,857 nipype.interface INFO:
stderr 2020-11-13T00:45:25.857233: + -- 36 other fixed ort regressors
201113-00:45:25,857 nipype.interface INFO:
stderr 2020-11-13T00:45:25.857378:++ 130 retained time points MINUS 39 regressors ==> 91 D.O.F. left
201113-00:45:25,857 nipype.interface INFO:
stderr 2020-11-13T00:45:25.857893:++ 38674 voxels in the spatial mask
201113-00:45:25,858 nipype.interface INFO:
stderr 2020-11-13T00:45:25.858068:++ Compute pseudo-inverse of fixed orts
201113-00:45:25,859 nipype.interface INFO:
stderr 2020-11-13T00:45:25.859605:++ Loading dataset
201113-00:45:25,910 nipype.interface INFO:
stderr 2020-11-13T00:45:25.910004:++ Starting project-orization
201113-00:45:26,223 nipype.interface INFO:
stderr 2020-11-13T00:45:26.223358:++ Convert results to output dataset
201113-00:45:27,612 nipype.interface INFO:
stderr 2020-11-13T00:45:27.612071:++ Output dataset ./residuals.nii.gz
201113-00:45:27,612 nipype.interface INFO:
stderr 2020-11-13T00:45:27.612353:++ ===== clock time = 2s 208ms
201113-00:45:27,772 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regression_before-filt_0_0.nuisance_regression".
201113-00:45:27,774 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.frequency_filtering_0_0.frequency_filter" in "/outputs/tmp/resting_preproc_sub-071_ses-1/frequency_filtering_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter".
201113-00:45:27,781 nipype.workflow INFO:
[Node] Running "frequency_filter" ("CPAC.utils.interfaces.function.Function")
201113-00:45:33,630 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.frequency_filtering_0_0.frequency_filter".
201113-00:45:33,632 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression" in "/outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression".
201113-00:45:33,641 nipype.workflow INFO:
[Node] Running "nuisance_regression" ("nipype.interfaces.afni.preprocess.TProject"), a CommandLine Interface with command:
3dTproject -input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/bandpassed_demeaned_filtered.nii.gz -mask /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -ort /outputs/tmp/resting_preproc_sub-071_ses-1/frequency_filtering_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/regressor_bandpassed_demeaned_filtered.1D -polort 2 -prefix residuals.nii.gz
201113-00:45:33,895 nipype.interface INFO:
stderr 2020-11-13T00:45:33.895103:++ 3dTproject: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-00:45:33,895 nipype.interface INFO:
stderr 2020-11-13T00:45:33.895465:++ Authored by: Cox the Algebraic (Linear)
201113-00:45:34,290 nipype.interface INFO:
stderr 2020-11-13T00:45:34.290598:++ Setting up regressors
201113-00:45:34,290 nipype.interface INFO:
stderr 2020-11-13T00:45:34.290917:++ 1 Blocks * 3 polynomials -- 3 polort regressors
201113-00:45:34,291 nipype.interface INFO:
stderr 2020-11-13T00:45:34.291080: + -- 36 other fixed ort regressors
201113-00:45:34,291 nipype.interface INFO:
stderr 2020-11-13T00:45:34.291224:++ 130 retained time points MINUS 39 regressors ==> 91 D.O.F. left
201113-00:45:34,291 nipype.interface INFO:
stderr 2020-11-13T00:45:34.291759:++ 38674 voxels in the spatial mask
201113-00:45:34,291 nipype.interface INFO:
stderr 2020-11-13T00:45:34.291929:++ Compute pseudo-inverse of fixed orts
201113-00:45:34,293 nipype.interface INFO:
stderr 2020-11-13T00:45:34.293426:++ Loading dataset
201113-00:45:34,344 nipype.interface INFO:
stderr 2020-11-13T00:45:34.344776:++ Starting project-orization
201113-00:45:34,657 nipype.interface INFO:
stderr 2020-11-13T00:45:34.657464:++ Convert results to output dataset
201113-00:45:36,107 nipype.interface INFO:
stderr 2020-11-13T00:45:36.107508:++ Output dataset ./residuals.nii.gz
201113-00:45:36,107 nipype.interface INFO:
stderr 2020-11-13T00:45:36.107817:++ ===== clock time = 2s 213ms
201113-00:45:36,293 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.nuisance_regression_after-filt_0_0.nuisance_regression".
201113-00:45:36,295 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_residuals" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_residuals".
201113-00:45:36,303 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_residuals" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:45:36,530 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_residuals".
201113-00:45:36,532 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_freq_filtered" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_freq_filtered".
201113-00:45:36,539 nipype.workflow INFO:
[Node] Running "sinker_0_functional_freq_filtered" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:45:36,769 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_freq_filtered".
201113-00:45:36,771 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_regressors" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_nuisance_regressors".
201113-00:45:36,778 nipype.workflow INFO:
[Node] Running "sinker_0_functional_nuisance_regressors" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:45:37,10 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_nuisance_regressors".
201113-00:45:37,12 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_csf_gm_wm_0.resample_o_csf" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_csf_gm_wm_0/resample_o_csf".
201113-00:45:37,16 nipype.workflow INFO:
[Node] Running "resample_o_csf" ("CPAC.utils.interfaces.function.Function")
201113-00:45:37,728 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_csf_gm_wm_0.resample_o_csf".
201113-00:45:37,729 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_csf_gm_wm_0.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_csf_gm_wm_0/montage_s".
201113-00:45:37,736 nipype.workflow INFO:
[Node] Running "montage_s" ("CPAC.utils.interfaces.function.Function")
201113-00:45:40,890 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_csf_gm_wm_0.montage_s".
201113-00:45:40,893 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___csf_gm_wm_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/sinker_0_qc___csf_gm_wm_s".
201113-00:45:40,900 nipype.workflow INFO:
[Node] Running "sinker_0_qc___csf_gm_wm_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:45:41,112 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___csf_gm_wm_s/montage_csf_gm_wm_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/csf_gm_wm_s/montage_csf_gm_wm_s.png
201113-00:45:41,129 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___csf_gm_wm_s".
201113-00:45:41,131 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_csf_gm_wm_0.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_csf_gm_wm_0/montage_a".
201113-00:45:41,137 nipype.workflow INFO:
[Node] Running "montage_a" ("CPAC.utils.interfaces.function.Function")
201113-00:45:44,543 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_csf_gm_wm_0.montage_a".
201113-00:45:44,546 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___csf_gm_wm_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/sinker_0_qc___csf_gm_wm_a".
201113-00:45:44,554 nipype.workflow INFO:
[Node] Running "sinker_0_qc___csf_gm_wm_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:45:44,765 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___csf_gm_wm_a/montage_csf_gm_wm_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/csf_gm_wm_a/montage_csf_gm_wm_a.png
201113-00:45:44,782 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___csf_gm_wm_a".
201113-00:45:44,784 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_anatomical_csf_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/sinker_0_anatomical_csf_mask".
201113-00:45:44,791 nipype.workflow INFO:
[Node] Running "sinker_0_anatomical_csf_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:45:45,19 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_anatomical_csf_mask".
201113-00:45:45,21 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_anatomical_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-1/sinker_0_anatomical_brain".
201113-00:45:45,29 nipype.workflow INFO:
[Node] Running "sinker_0_anatomical_brain" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:45:45,263 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_anatomical_brain".
201113-00:45:45,265 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_edge_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_edge_0".
201113-00:45:45,269 nipype.workflow INFO:
[Node] Running "anat_edge_0" ("CPAC.utils.interfaces.function.Function")
201113-00:45:48,198 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_edge_0".
201113-00:45:48,200 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_anat_0.resample_o" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/resample_o".
201113-00:45:48,205 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:45:49,50 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_anat_0.resample_o".
201113-00:45:49,52 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_tgng_run-3/montage_s".
201113-00:45:49,58 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_tgng_run-3/montage_s/mapflow/_montage_s0".
201113-00:45:49,63 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:45:51,239 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:45:51,244 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_anat_0.montage_s".
201113-00:45:51,244 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:45:51,252 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:45:51,464 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_t1_edge_s/_scan_tgng_run-3/_montage_s0/t1_edge_on_mean_func_in_t1_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_t1_edge_s/_scan_tgng_run-3/_montage_s0/t1_edge_on_mean_func_in_t1_s.png
201113-00:45:51,482 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:45:51,484 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_tgng_run-3/montage_a".
201113-00:45:51,491 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_tgng_run-3/montage_a/mapflow/_montage_a0".
201113-00:45:51,495 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:45:53,974 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:45:53,977 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_anat_0.montage_a".
201113-00:45:53,977 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:45:53,985 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:45:54,195 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_t1_edge_a/_scan_tgng_run-3/_montage_a0/t1_edge_on_mean_func_in_t1_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_t1_edge_a/_scan_tgng_run-3/_montage_a0/t1_edge_on_mean_func_in_t1_a.png
201113-00:45:54,211 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:45:54,213 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_tgng_run-2/montage_s".
201113-00:45:54,221 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_tgng_run-2/montage_s/mapflow/_montage_s0".
201113-00:45:54,225 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:45:56,467 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:45:56,470 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_anat_0.montage_s".
201113-00:45:56,471 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:45:56,478 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:45:56,691 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_t1_edge_s/_scan_tgng_run-2/_montage_s0/t1_edge_on_mean_func_in_t1_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_t1_edge_s/_scan_tgng_run-2/_montage_s0/t1_edge_on_mean_func_in_t1_s.png
201113-00:45:56,707 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:45:56,709 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_tgng_run-2/montage_a".
201113-00:45:56,715 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_tgng_run-2/montage_a/mapflow/_montage_a0".
201113-00:45:56,718 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:45:59,183 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:45:59,187 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_anat_0.montage_a".
201113-00:45:59,187 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:45:59,195 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:45:59,405 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_t1_edge_a/_scan_tgng_run-2/_montage_a0/t1_edge_on_mean_func_in_t1_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_t1_edge_a/_scan_tgng_run-2/_montage_a0/t1_edge_on_mean_func_in_t1_a.png
201113-00:45:59,421 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:45:59,423 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_tgng_run-1/montage_s".
201113-00:45:59,429 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_tgng_run-1/montage_s/mapflow/_montage_s0".
201113-00:45:59,434 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:46:01,617 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:46:01,620 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_anat_0.montage_s".
201113-00:46:01,621 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:46:01,628 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:46:01,842 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_t1_edge_s/_scan_tgng_run-1/_montage_s0/t1_edge_on_mean_func_in_t1_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_t1_edge_s/_scan_tgng_run-1/_montage_s0/t1_edge_on_mean_func_in_t1_s.png
201113-00:46:01,858 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:46:01,859 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_tgng_run-1/montage_a".
201113-00:46:01,866 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_tgng_run-1/montage_a/mapflow/_montage_a0".
201113-00:46:01,870 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:46:04,337 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:46:04,340 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_anat_0.montage_a".
201113-00:46:04,341 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:46:04,348 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:46:04,562 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_t1_edge_a/_scan_tgng_run-1/_montage_a0/t1_edge_on_mean_func_in_t1_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_t1_edge_a/_scan_tgng_run-1/_montage_a0/t1_edge_on_mean_func_in_t1_a.png
201113-00:46:04,579 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:46:04,581 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_ms_run-1/montage_s".
201113-00:46:04,588 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_ms_run-1/montage_s/mapflow/_montage_s0".
201113-00:46:04,594 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:46:06,786 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:46:06,789 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_anat_0.montage_s".
201113-00:46:06,790 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:46:06,798 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:46:07,11 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_t1_edge_s/_scan_ms_run-1/_montage_s0/t1_edge_on_mean_func_in_t1_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_t1_edge_s/_scan_ms_run-1/_montage_s0/t1_edge_on_mean_func_in_t1_s.png
201113-00:46:07,29 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:46:07,31 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_ms_run-1/montage_a".
201113-00:46:07,37 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_ms_run-1/montage_a/mapflow/_montage_a0".
201113-00:46:07,42 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:46:09,513 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:46:09,517 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_anat_0.montage_a".
201113-00:46:09,517 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:46:09,525 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:46:09,735 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_t1_edge_a/_scan_ms_run-1/_montage_a0/t1_edge_on_mean_func_in_t1_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_t1_edge_a/_scan_ms_run-1/_montage_a0/t1_edge_on_mean_func_in_t1_a.png
201113-00:46:09,751 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:46:09,753 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_matching_run-3/montage_s".
201113-00:46:09,759 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_matching_run-3/montage_s/mapflow/_montage_s0".
201113-00:46:09,764 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:46:12,145 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:46:12,148 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_anat_0.montage_s".
201113-00:46:12,149 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:46:12,156 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:46:12,365 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_t1_edge_s/_scan_matching_run-3/_montage_s0/t1_edge_on_mean_func_in_t1_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_t1_edge_s/_scan_matching_run-3/_montage_s0/t1_edge_on_mean_func_in_t1_s.png
201113-00:46:12,381 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:46:12,383 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_matching_run-3/montage_a".
201113-00:46:12,388 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_matching_run-3/montage_a/mapflow/_montage_a0".
201113-00:46:12,393 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:46:14,646 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:46:14,649 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_anat_0.montage_a".
201113-00:46:14,649 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:46:14,657 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:46:14,871 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_t1_edge_a/_scan_matching_run-3/_montage_a0/t1_edge_on_mean_func_in_t1_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_t1_edge_a/_scan_matching_run-3/_montage_a0/t1_edge_on_mean_func_in_t1_a.png
201113-00:46:14,888 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:46:14,890 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_matching_run-2/montage_s".
201113-00:46:14,896 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_matching_run-2/montage_s/mapflow/_montage_s0".
201113-00:46:14,901 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:46:17,301 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:46:17,305 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_anat_0.montage_s".
201113-00:46:17,305 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:46:17,312 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:46:17,523 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_t1_edge_s/_scan_matching_run-2/_montage_s0/t1_edge_on_mean_func_in_t1_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_t1_edge_s/_scan_matching_run-2/_montage_s0/t1_edge_on_mean_func_in_t1_s.png
201113-00:46:17,539 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:46:17,541 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_matching_run-2/montage_a".
201113-00:46:17,547 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_matching_run-2/montage_a/mapflow/_montage_a0".
201113-00:46:17,552 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:46:19,830 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:46:19,833 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_anat_0.montage_a".
201113-00:46:19,833 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:46:19,841 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:46:20,54 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_t1_edge_a/_scan_matching_run-2/_montage_a0/t1_edge_on_mean_func_in_t1_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_t1_edge_a/_scan_matching_run-2/_montage_a0/t1_edge_on_mean_func_in_t1_a.png
201113-00:46:20,75 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:46:20,76 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_matching_run-1/montage_s".
201113-00:46:20,82 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_matching_run-1/montage_s/mapflow/_montage_s0".
201113-00:46:20,88 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-00:46:22,494 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-00:46:22,498 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_anat_0.montage_s".
201113-00:46:22,498 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:46:22,505 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:46:22,715 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_t1_edge_s/_scan_matching_run-1/_montage_s0/t1_edge_on_mean_func_in_t1_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_t1_edge_s/_scan_matching_run-1/_montage_s0/t1_edge_on_mean_func_in_t1_s.png
201113-00:46:22,732 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_s".
201113-00:46:22,734 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_matching_run-1/montage_a".
201113-00:46:22,740 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_anat_0/_scan_matching_run-1/montage_a/mapflow/_montage_a0".
201113-00:46:22,744 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-00:46:25,31 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-00:46:25,35 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_anat_0.montage_a".
201113-00:46:25,36 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:46:25,43 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_t1_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:46:25,254 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_t1_edge_a/_scan_matching_run-1/_montage_a0/t1_edge_on_mean_func_in_t1_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_t1_edge_a/_scan_matching_run-1/_montage_a0/t1_edge_on_mean_func_in_t1_a.png
201113-00:46:25,272 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_t1_edge_a".
201113-00:46:25,274 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_motion_estimate_filter_info_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/sinker_0_motion_estimate_filter_info_plot".
201113-00:46:25,282 nipype.workflow INFO:
[Node] Running "sinker_0_motion_estimate_filter_info_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:46:25,516 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_motion_estimate_filter_info_plot".
201113-00:46:25,518 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_motion_estimate_filter_info_design" in "/outputs/tmp/resting_preproc_sub-071_ses-1/sinker_0_motion_estimate_filter_info_design".
201113-00:46:25,525 nipype.workflow INFO:
[Node] Running "sinker_0_motion_estimate_filter_info_design" ("CPAC.utils.interfaces.datasink.DataSink")
201113-00:46:25,752 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_motion_estimate_filter_info_design".
201113-00:46:25,754 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.check_for_s3_lateral_ventricles_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/check_for_s3_lateral_ventricles_mask".
201113-00:46:25,758 nipype.workflow INFO:
[Node] Running "check_for_s3_lateral_ventricles_mask" ("CPAC.utils.interfaces.function.Function")
201113-00:46:25,991 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.check_for_s3_lateral_ventricles_mask".
201113-00:46:25,993 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.resampled_template_brain_for_func_derivative" in "/outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_brain_for_func_derivative".
201113-00:46:25,998 nipype.workflow INFO:
[Node] Running "resampled_template_brain_for_func_derivative" ("CPAC.utils.interfaces.function.Function")
201113-00:46:26,233 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.resampled_template_brain_for_func_derivative".
201113-00:46:26,234 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.resampled_template_brain_for_func_preproc" in "/outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_brain_for_func_preproc".
201113-00:46:26,239 nipype.workflow INFO:
[Node] Running "resampled_template_brain_for_func_preproc" ("CPAC.utils.interfaces.function.Function")
201113-00:46:26,472 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.resampled_template_brain_for_func_preproc".
201113-00:46:26,474 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.func_template_edge_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/func_template_edge_0".
201113-00:46:26,478 nipype.workflow INFO:
[Node] Running "func_template_edge_0" ("CPAC.utils.interfaces.function.Function")
201113-00:46:26,986 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.func_template_edge_0".
201113-00:46:26,987 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mfi_0.resample_o" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/resample_o".
201113-00:46:26,992 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-00:46:27,435 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mfi_0.resample_o".
201113-00:46:27,436 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.resampled_template_skull_for_func_derivative" in "/outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_func_derivative".
201113-00:46:27,440 nipype.workflow INFO:
[Node] Running "resampled_template_skull_for_func_derivative" ("CPAC.utils.interfaces.function.Function")
201113-00:46:27,653 nipype.workflow INFO:
[Node] Setting-up "template_skull_for_func_derivative" in "/outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative".
201113-00:46:27,658 nipype.workflow INFO:
[Node] Running "template_skull_for_func_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference.nii.gz
201113-00:46:28,424 nipype.workflow INFO:
[Node] Finished "template_skull_for_func_derivative".
201113-00:46:28,440 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.resampled_template_skull_for_func_derivative".
201113-00:46:28,442 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.resampled_template_skull_for_func_preproc" in "/outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_func_preproc".
201113-00:46:28,446 nipype.workflow INFO:
[Node] Running "resampled_template_skull_for_func_preproc" ("CPAC.utils.interfaces.function.Function")
201113-00:46:28,658 nipype.workflow INFO:
[Node] Setting-up "template_skull_for_func_preproc" in "/outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc".
201113-00:46:28,664 nipype.workflow INFO:
[Node] Running "template_skull_for_func_preproc" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference.nii.gz
201113-00:46:29,353 nipype.workflow INFO:
[Node] Finished "template_skull_for_func_preproc".
201113-00:46:29,368 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.resampled_template_skull_for_func_preproc".
201113-00:46:29,370 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.check_for_s3_PRIORS_WHITE" in "/outputs/tmp/resting_preproc_sub-071_ses-1/check_for_s3_PRIORS_WHITE".
201113-00:46:29,374 nipype.workflow INFO:
[Node] Running "check_for_s3_PRIORS_WHITE" ("CPAC.utils.interfaces.function.Function")
201113-00:46:29,617 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.check_for_s3_PRIORS_WHITE".
201113-00:46:29,618 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.check_for_s3_PRIORS_GRAY" in "/outputs/tmp/resting_preproc_sub-071_ses-1/check_for_s3_PRIORS_GRAY".
201113-00:46:29,622 nipype.workflow INFO:
[Node] Running "check_for_s3_PRIORS_GRAY" ("CPAC.utils.interfaces.function.Function")
201113-00:46:29,854 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.check_for_s3_PRIORS_GRAY".
201113-00:46:29,856 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.check_for_s3_PRIORS_CSF" in "/outputs/tmp/resting_preproc_sub-071_ses-1/check_for_s3_PRIORS_CSF".
201113-00:46:29,860 nipype.workflow INFO:
[Node] Running "check_for_s3_PRIORS_CSF" ("CPAC.utils.interfaces.function.Function")
201113-00:46:30,116 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.check_for_s3_PRIORS_CSF".
201113-00:46:30,118 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.resampled_template_skull_for_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_anat".
201113-00:46:30,123 nipype.workflow INFO:
[Node] Running "resampled_template_skull_for_anat" ("CPAC.utils.interfaces.function.Function")
201113-00:46:30,334 nipype.workflow INFO:
[Node] Setting-up "template_skull_for_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_anat/template_skull_for_anat".
201113-00:46:30,341 nipype.workflow INFO:
[Node] Running "template_skull_for_anat" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix mni_icbm152_t1_tal_nlin_asym_09c_resample.nii.gz -rmode Cu -dxyz 1.000000 1.000000 1.000000 -inset /outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_anat/template_skull_for_anat/mni_icbm152_t1_tal_nlin_asym_09c.nii
201113-00:46:30,602 nipype.interface INFO:
stderr 2020-11-13T00:46:30.602481:** AFNI converts NIFTI_datatype=4 (INT16) in file /outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_anat/template_skull_for_anat/mni_icbm152_t1_tal_nlin_asym_09c.nii to FLOAT32
201113-00:46:30,602 nipype.interface INFO:
stderr 2020-11-13T00:46:30.602897: Warnings of this type will be muted for this session.
201113-00:46:30,603 nipype.interface INFO:
stderr 2020-11-13T00:46:30.602897: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-00:46:33,88 nipype.workflow INFO:
[Node] Finished "template_skull_for_anat".
201113-00:46:33,104 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.resampled_template_skull_for_anat".
201113-00:46:33,106 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.resampled_template_brain_for_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_brain_for_anat".
201113-00:46:33,109 nipype.workflow INFO:
[Node] Running "resampled_template_brain_for_anat" ("CPAC.utils.interfaces.function.Function")
201113-00:46:33,322 nipype.workflow INFO:
[Node] Setting-up "template_brain_for_anat" in "/outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_brain_for_anat/template_brain_for_anat".
201113-00:46:33,327 nipype.workflow INFO:
[Node] Running "template_brain_for_anat" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix tpl-MNI152NLin2009cAsym_res-01_desc-brain_T1w_resample.nii.gz -rmode Cu -dxyz 1.000000 1.000000 1.000000 -inset /outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_brain_for_anat/template_brain_for_anat/tpl-MNI152NLin2009cAsym_res-01_desc-brain_T1w.nii.gz
201113-00:46:35,148 nipype.workflow INFO:
[Node] Finished "template_brain_for_anat".
201113-00:46:35,162 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.resampled_template_brain_for_anat".
201113-00:46:35,163 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_mni_ants_register_0.calc_ants_warp" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp".
201113-00:46:35,174 nipype.workflow INFO:
[Node] Running "calc_ants_warp" ("nipype.interfaces.utility.wrappers.Function")
201113-04:17:14,3 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_mni_ants_register_0.calc_ants_warp".
201113-04:17:14,13 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mni_anat_0.resample_u" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mni_anat_0/resample_u".
201113-04:17:14,25 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-04:17:15,298 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mni_anat_0.resample_u".
201113-04:17:15,299 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_anatomical_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/sinker_0_anatomical_to_standard".
201113-04:17:15,317 nipype.workflow INFO:
[Node] Running "sinker_0_anatomical_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:17:15,543 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_anatomical_to_standard".
201113-04:17:15,545 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_mni_ants_register_0.select_inverse_warp" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/select_inverse_warp".
201113-04:17:15,556 nipype.workflow INFO:
[Node] Running "select_inverse_warp" ("nipype.interfaces.utility.wrappers.Function")
201113-04:17:15,783 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_mni_ants_register_0.select_inverse_warp".
201113-04:17:15,784 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_mni_to_anatomical_nonlinear_xfm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/sinker_0_mni_to_anatomical_nonlinear_xfm".
201113-04:17:15,791 nipype.workflow INFO:
[Node] Running "sinker_0_mni_to_anatomical_nonlinear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:17:16,20 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_mni_to_anatomical_nonlinear_xfm".
201113-04:17:16,22 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_mni_ants_register_0.select_forward_warp" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/select_forward_warp".
201113-04:17:16,34 nipype.workflow INFO:
[Node] Running "select_forward_warp" ("nipype.interfaces.utility.wrappers.Function")
201113-04:17:16,261 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_mni_ants_register_0.select_forward_warp".
201113-04:17:16,263 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_anatomical_to_mni_nonlinear_xfm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/sinker_0_anatomical_to_mni_nonlinear_xfm".
201113-04:17:16,270 nipype.workflow INFO:
[Node] Running "sinker_0_anatomical_to_mni_nonlinear_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:17:16,501 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_anatomical_to_mni_nonlinear_xfm".
201113-04:17:16,503 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_mni_ants_register_0.select_forward_affine" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/select_forward_affine".
201113-04:17:16,515 nipype.workflow INFO:
[Node] Running "select_forward_affine" ("nipype.interfaces.utility.wrappers.Function")
201113-04:17:16,743 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_mni_ants_register_0.select_forward_affine".
201113-04:17:16,745 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_ants_affine_xfm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/sinker_0_ants_affine_xfm".
201113-04:17:16,751 nipype.workflow INFO:
[Node] Running "sinker_0_ants_affine_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:17:16,983 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_ants_affine_xfm".
201113-04:17:16,985 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_mni_ants_register_0.select_forward_rigid" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/select_forward_rigid".
201113-04:17:16,996 nipype.workflow INFO:
[Node] Running "select_forward_rigid" ("nipype.interfaces.utility.wrappers.Function")
201113-04:17:17,224 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_mni_ants_register_0.select_forward_rigid".
201113-04:17:17,226 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_ants_rigid_xfm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/sinker_0_ants_rigid_xfm".
201113-04:17:17,234 nipype.workflow INFO:
[Node] Running "sinker_0_ants_rigid_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:17:17,463 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_ants_rigid_xfm".
201113-04:17:17,465 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_mni_ants_register_0.select_forward_initial" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/select_forward_initial".
201113-04:17:17,477 nipype.workflow INFO:
[Node] Running "select_forward_initial" ("nipype.interfaces.utility.wrappers.Function")
201113-04:17:17,710 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_mni_ants_register_0.select_forward_initial".
201113-04:17:17,712 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-04:17:17,722 nipype.workflow INFO:
[Node] Running "collect_transforms_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.base.Merge")
201113-04:17:17,952 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-04:17:17,954 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-04:17:17,959 nipype.workflow INFO:
[Node] Running "check_transformsfunctional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-04:17:18,192 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-04:17:18,194 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-04:17:18,203 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-04:17:20,956 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-04:17:20,958 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.write_composite_xfm_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/write_composite_xfm_functional_to_standard__t1_0".
201113-04:17:20,965 nipype.workflow INFO:
[Node] Running "write_composite_xfm_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output [ func_to_standard_xfm.nii.gz, 1 ] --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-04:28:46,578 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.write_composite_xfm_functional_to_standard__t1_0".
201113-04:28:46,581 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard_xfm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard_xfm".
201113-04:28:46,589 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:28:46,819 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard_xfm".
201113-04:28:46,821 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-04:28:46,832 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_freq_filtered_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/frequency_filtering_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/bandpassed_demeaned_filtered.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output bandpassed_demeaned_filtered_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-04:28:49,572 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-04:28:49,574 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0".
201113-04:28:49,582 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-04:40:35,6 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_to_standard__t1_0".
201113-04:40:35,9 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-04:40:35,41 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-04:40:35,495 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.resample_functional_roi_0".
201113-04:40:35,497 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-04:40:35,505 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-04:40:41,329 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats".
201113-04:40:41,331 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-04:40:41,336 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-04:40:41,578 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv".
201113-04:40:41,580 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-04:40:41,622 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-04:40:41,652 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-04:40:42,177 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-04:40:42,180 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.ndmg_graphs_0".
201113-04:40:42,181 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-04:40:42,189 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:40:42,420 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph".
201113-04:40:42,422 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-04:40:42,427 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-04:40:42,654 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz".
201113-04:40:42,656 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-04:40:42,662 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:40:42,892 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries".
201113-04:40:42,893 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-04:40:42,922 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-04:40:43,371 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.resample_functional_roi_0".
201113-04:40:43,373 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-04:40:43,379 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-04:40:49,156 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats".
201113-04:40:49,158 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-04:40:49,163 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-04:40:49,406 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv".
201113-04:40:49,408 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-04:40:49,449 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-04:40:49,483 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-04:40:50,7 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-04:40:50,12 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.ndmg_graphs_0".
201113-04:40:50,13 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-04:40:50,19 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:40:50,250 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph".
201113-04:40:50,252 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-04:40:50,257 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-04:40:50,488 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz".
201113-04:40:50,490 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-04:40:50,498 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:40:50,734 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries".
201113-04:40:50,736 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard".
201113-04:40:50,745 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:40:50,975 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard".
201113-04:40:50,977 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/apply_ants_warp_motion_correct_to_standard__t1_0".
201113-04:40:51,114 nipype.workflow INFO:
[Node] Running "apply_ants_warp_motion_correct_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_motion_correct_mcflirt/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-04:52:45,241 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0".
201113-04:52:45,243 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_motion_correct_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_motion_correct_to_standard".
201113-04:52:45,252 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:52:45,483 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_motion_correct_to_standard".
201113-04:52:45,485 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-04:52:45,509 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-04:52:53,4 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-04:52:53,6 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard__t1_0".
201113-04:52:53,14 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-3/func_mean/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-04:53:00,477 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0".
201113-04:53:00,479 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mfi_0.resample_u" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_tgng_run-3/resample_u".
201113-04:53:00,484 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-04:53:01,202 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mfi_0.resample_u".
201113-04:53:01,203 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_tgng_run-3/montage_s".
201113-04:53:01,211 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_tgng_run-3/montage_s/mapflow/_montage_s0".
201113-04:53:01,215 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-04:53:03,5 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-04:53:03,9 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_s".
201113-04:53:03,9 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_qc___mean_func_with_mni_edge_s".
201113-04:53:03,17 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:53:03,231 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_mni_edge_s/_scan_tgng_run-3/_montage_s0/MNI_edge_on_mean_func_mni_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_mni_edge_s/_scan_tgng_run-3/_montage_s0/MNI_edge_on_mean_func_mni_s.png
201113-04:53:03,248 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_s".
201113-04:53:03,249 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_tgng_run-3/montage_a".
201113-04:53:03,256 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_tgng_run-3/montage_a/mapflow/_montage_a0".
201113-04:53:03,260 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-04:53:05,256 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-04:53:05,259 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_a".
201113-04:53:05,259 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_qc___mean_func_with_mni_edge_a".
201113-04:53:05,266 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:53:05,475 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_mni_edge_a/_scan_tgng_run-3/_montage_a0/MNI_edge_on_mean_func_mni_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_mni_edge_a/_scan_tgng_run-3/_montage_a0/MNI_edge_on_mean_func_mni_a.png
201113-04:53:05,491 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_a".
201113-04:53:05,493 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_resample" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-3/csf_resample".
201113-04:53:05,499 nipype.workflow INFO:
[Node] Running "csf_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_csf_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-3/csf_resample/avg152T1_csf_bin.nii.gz
201113-04:53:05,773 nipype.interface INFO:
stderr 2020-11-13T04:53:05.773339:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-04:53:05,773 nipype.interface INFO:
stderr 2020-11-13T04:53:05.773684: Warnings of this type will be muted for this session.
201113-04:53:05,773 nipype.interface INFO:
stderr 2020-11-13T04:53:05.773684: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-04:53:06,21 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_resample".
201113-04:53:06,23 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-3/csf_mask".
201113-04:53:06,28 nipype.workflow INFO:
[Node] Running "csf_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-3/csf_resample/avg152T1_csf_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_csf_bin_resample_calc.nii
201113-04:53:06,275 nipype.interface INFO:
stderr 2020-11-13T04:53:06.274958:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-04:53:06,275 nipype.interface INFO:
stderr 2020-11-13T04:53:06.275288:++ Authored by: A cast of thousands
201113-04:53:06,368 nipype.interface INFO:
stderr 2020-11-13T04:53:06.368609:++ Output dataset ./avg152T1_csf_bin_resample_calc.nii
201113-04:53:06,525 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_mask".
201113-04:53:06,526 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_resample" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-3/wm_resample".
201113-04:53:06,535 nipype.workflow INFO:
[Node] Running "wm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_white_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-3/wm_resample/avg152T1_white_bin.nii.gz
201113-04:53:06,778 nipype.interface INFO:
stderr 2020-11-13T04:53:06.778017:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-04:53:06,778 nipype.interface INFO:
stderr 2020-11-13T04:53:06.778343: Warnings of this type will be muted for this session.
201113-04:53:06,778 nipype.interface INFO:
stderr 2020-11-13T04:53:06.778343: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-04:53:06,998 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_resample".
201113-04:53:06,999 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-3/wm_mask".
201113-04:53:07,5 nipype.workflow INFO:
[Node] Running "wm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-3/wm_resample/avg152T1_white_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_white_bin_resample_calc.nii
201113-04:53:07,247 nipype.interface INFO:
stderr 2020-11-13T04:53:07.247616:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-04:53:07,247 nipype.interface INFO:
stderr 2020-11-13T04:53:07.247930:++ Authored by: A cast of thousands
201113-04:53:07,361 nipype.interface INFO:
stderr 2020-11-13T04:53:07.361817:++ Output dataset ./avg152T1_white_bin_resample_calc.nii
201113-04:53:07,515 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_mask".
201113-04:53:07,517 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_resample" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-3/gm_resample".
201113-04:53:07,536 nipype.workflow INFO:
[Node] Running "gm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_gray_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-3/gm_resample/avg152T1_gray_bin.nii.gz
201113-04:53:07,778 nipype.interface INFO:
stderr 2020-11-13T04:53:07.778716:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-04:53:07,779 nipype.interface INFO:
stderr 2020-11-13T04:53:07.779042: Warnings of this type will be muted for this session.
201113-04:53:07,779 nipype.interface INFO:
stderr 2020-11-13T04:53:07.779042: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-04:53:07,996 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_resample".
201113-04:53:07,997 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-3/gm_mask".
201113-04:53:08,3 nipype.workflow INFO:
[Node] Running "gm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-3/gm_resample/avg152T1_gray_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_gray_bin_resample_calc.nii
201113-04:53:08,246 nipype.interface INFO:
stderr 2020-11-13T04:53:08.246661:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-04:53:08,246 nipype.interface INFO:
stderr 2020-11-13T04:53:08.246976:++ Authored by: A cast of thousands
201113-04:53:08,362 nipype.interface INFO:
stderr 2020-11-13T04:53:08.362885:++ Output dataset ./avg152T1_gray_bin_resample_calc.nii
201113-04:53:08,518 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_mask".
201113-04:53:08,519 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.carpet_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_plot".
201113-04:53:08,527 nipype.workflow INFO:
[Node] Running "carpet_plot" ("CPAC.utils.interfaces.function.Function")
201113-04:53:14,208 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.carpet_plot".
201113-04:53:14,209 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___carpet" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_qc___carpet".
201113-04:53:14,217 nipype.workflow INFO:
[Node] Running "sinker_0_qc___carpet" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:53:14,425 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___carpet/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/carpet/_scan_tgng_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png
201113-04:53:14,444 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___carpet".
201113-04:53:14,445 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_mean_functional_to_standard".
201113-04:53:14,452 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:53:14,681 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_to_standard".
201113-04:53:14,683 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-04:53:14,695 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-04:53:17,168 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-04:53:17,170 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-04:53:17,179 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-3/combine_masks/sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-071_ses-1_task-tgng_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/change_transform_type_0/updated_affine.txt
201113-04:53:19,640 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-04:53:19,642 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/sinker_0_functional_brain_mask_to_standard".
201113-04:53:19,651 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-04:53:19,880 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask_to_standard".
201113-04:53:19,882 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-3/inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-04:53:19,887 nipype.workflow INFO:
[Node] Running "inverse_transform_flags_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-04:53:20,118 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-04:53:20,119 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-04:53:20,138 nipype.workflow INFO:
[Node] Running "collect_transforms_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.base.Merge")
201113-04:53:20,368 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-04:53:20,370 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-04:53:20,374 nipype.workflow INFO:
[Node] Running "check_transformsfunctional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-04:53:20,606 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-04:53:20,608 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-04:53:20,620 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-04:53:23,386 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-04:53:23,387 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.write_composite_xfm_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/write_composite_xfm_functional_to_standard__t1_0".
201113-04:53:23,394 nipype.workflow INFO:
[Node] Running "write_composite_xfm_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output [ func_to_standard_xfm.nii.gz, 1 ] --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:04:51,86 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.write_composite_xfm_functional_to_standard__t1_0".
201113-05:04:51,89 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard_xfm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard_xfm".
201113-05:04:51,98 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:04:51,328 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard_xfm".
201113-05:04:51,329 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-05:04:51,339 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_freq_filtered_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/frequency_filtering_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/bandpassed_demeaned_filtered.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output bandpassed_demeaned_filtered_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:04:54,107 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-05:04:54,109 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0".
201113-05:04:54,116 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:16:41,492 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_to_standard__t1_0".
201113-05:16:41,494 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-05:16:41,501 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-05:16:41,949 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.resample_functional_roi_0".
201113-05:16:41,951 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-05:16:41,957 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-05:16:47,750 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats".
201113-05:16:47,752 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-05:16:47,756 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-05:16:47,995 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv".
201113-05:16:47,997 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-05:16:48,38 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-05:16:48,72 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-05:16:48,596 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-05:16:48,600 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.ndmg_graphs_0".
201113-05:16:48,601 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-05:16:48,611 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:16:48,843 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph".
201113-05:16:48,845 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-05:16:48,850 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-05:16:49,83 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz".
201113-05:16:49,85 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-05:16:49,92 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:16:49,324 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries".
201113-05:16:49,326 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-05:16:49,333 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-05:16:49,777 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.resample_functional_roi_0".
201113-05:16:49,779 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-05:16:49,784 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-05:16:55,568 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats".
201113-05:16:55,570 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-05:16:55,575 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-05:16:55,819 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv".
201113-05:16:55,821 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-05:16:55,862 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-05:16:55,894 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-05:16:56,423 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-05:16:56,426 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.ndmg_graphs_0".
201113-05:16:56,427 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-05:16:56,433 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:16:56,663 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph".
201113-05:16:56,664 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-05:16:56,669 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-05:16:56,902 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz".
201113-05:16:56,903 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-05:16:56,911 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:16:57,142 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries".
201113-05:16:57,144 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard".
201113-05:16:57,153 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:16:57,385 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard".
201113-05:16:57,387 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/apply_ants_warp_motion_correct_to_standard__t1_0".
201113-05:16:57,530 nipype.workflow INFO:
[Node] Running "apply_ants_warp_motion_correct_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:28:53,387 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0".
201113-05:28:53,389 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_motion_correct_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_motion_correct_to_standard".
201113-05:28:53,398 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:28:53,628 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_motion_correct_to_standard".
201113-05:28:53,629 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-05:28:53,666 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:29:01,161 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-05:29:01,164 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard__t1_0".
201113-05:29:01,172 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:29:08,649 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0".
201113-05:29:08,651 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mfi_0.resample_u" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_tgng_run-2/resample_u".
201113-05:29:08,656 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-05:29:09,369 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mfi_0.resample_u".
201113-05:29:09,371 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_tgng_run-2/montage_s".
201113-05:29:09,377 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_tgng_run-2/montage_s/mapflow/_montage_s0".
201113-05:29:09,381 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-05:29:11,142 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-05:29:11,146 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_s".
201113-05:29:11,146 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_qc___mean_func_with_mni_edge_s".
201113-05:29:11,154 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:29:11,364 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_mni_edge_s/_scan_tgng_run-2/_montage_s0/MNI_edge_on_mean_func_mni_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_mni_edge_s/_scan_tgng_run-2/_montage_s0/MNI_edge_on_mean_func_mni_s.png
201113-05:29:11,380 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_s".
201113-05:29:11,382 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_tgng_run-2/montage_a".
201113-05:29:11,388 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_tgng_run-2/montage_a/mapflow/_montage_a0".
201113-05:29:11,392 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-05:29:13,386 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-05:29:13,389 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_a".
201113-05:29:13,389 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_qc___mean_func_with_mni_edge_a".
201113-05:29:13,397 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:29:13,611 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_mni_edge_a/_scan_tgng_run-2/_montage_a0/MNI_edge_on_mean_func_mni_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_mni_edge_a/_scan_tgng_run-2/_montage_a0/MNI_edge_on_mean_func_mni_a.png
201113-05:29:13,627 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_a".
201113-05:29:13,629 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_resample" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-2/csf_resample".
201113-05:29:13,635 nipype.workflow INFO:
[Node] Running "csf_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_csf_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-2/csf_resample/avg152T1_csf_bin.nii.gz
201113-05:29:13,881 nipype.interface INFO:
stderr 2020-11-13T05:29:13.881397:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-05:29:13,881 nipype.interface INFO:
stderr 2020-11-13T05:29:13.881759: Warnings of this type will be muted for this session.
201113-05:29:13,881 nipype.interface INFO:
stderr 2020-11-13T05:29:13.881759: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-05:29:14,99 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_resample".
201113-05:29:14,101 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-2/csf_mask".
201113-05:29:14,107 nipype.workflow INFO:
[Node] Running "csf_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-2/csf_resample/avg152T1_csf_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_csf_bin_resample_calc.nii
201113-05:29:14,359 nipype.interface INFO:
stderr 2020-11-13T05:29:14.359273:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-05:29:14,359 nipype.interface INFO:
stderr 2020-11-13T05:29:14.359618:++ Authored by: A cast of thousands
201113-05:29:14,478 nipype.interface INFO:
stderr 2020-11-13T05:29:14.478278:++ Output dataset ./avg152T1_csf_bin_resample_calc.nii
201113-05:29:14,635 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_mask".
201113-05:29:14,636 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_resample" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-2/wm_resample".
201113-05:29:14,643 nipype.workflow INFO:
[Node] Running "wm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_white_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-2/wm_resample/avg152T1_white_bin.nii.gz
201113-05:29:14,889 nipype.interface INFO:
stderr 2020-11-13T05:29:14.889507:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-05:29:14,889 nipype.interface INFO:
stderr 2020-11-13T05:29:14.889852: Warnings of this type will be muted for this session.
201113-05:29:14,889 nipype.interface INFO:
stderr 2020-11-13T05:29:14.889852: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-05:29:15,105 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_resample".
201113-05:29:15,107 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-2/wm_mask".
201113-05:29:15,113 nipype.workflow INFO:
[Node] Running "wm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-2/wm_resample/avg152T1_white_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_white_bin_resample_calc.nii
201113-05:29:15,366 nipype.interface INFO:
stderr 2020-11-13T05:29:15.366586:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-05:29:15,366 nipype.interface INFO:
stderr 2020-11-13T05:29:15.366953:++ Authored by: A cast of thousands
201113-05:29:15,489 nipype.interface INFO:
stderr 2020-11-13T05:29:15.489061:++ Output dataset ./avg152T1_white_bin_resample_calc.nii
201113-05:29:15,646 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_mask".
201113-05:29:15,647 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_resample" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-2/gm_resample".
201113-05:29:15,654 nipype.workflow INFO:
[Node] Running "gm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_gray_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-2/gm_resample/avg152T1_gray_bin.nii.gz
201113-05:29:15,902 nipype.interface INFO:
stderr 2020-11-13T05:29:15.902439:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-05:29:15,902 nipype.interface INFO:
stderr 2020-11-13T05:29:15.902799: Warnings of this type will be muted for this session.
201113-05:29:15,902 nipype.interface INFO:
stderr 2020-11-13T05:29:15.902799: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-05:29:16,93 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_resample".
201113-05:29:16,95 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-2/gm_mask".
201113-05:29:16,99 nipype.workflow INFO:
[Node] Running "gm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-2/gm_resample/avg152T1_gray_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_gray_bin_resample_calc.nii
201113-05:29:16,350 nipype.interface INFO:
stderr 2020-11-13T05:29:16.350800:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-05:29:16,351 nipype.interface INFO:
stderr 2020-11-13T05:29:16.351436:++ Authored by: A cast of thousands
201113-05:29:16,448 nipype.interface INFO:
stderr 2020-11-13T05:29:16.448423:++ Output dataset ./avg152T1_gray_bin_resample_calc.nii
201113-05:29:16,604 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_mask".
201113-05:29:16,605 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.carpet_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_plot".
201113-05:29:16,612 nipype.workflow INFO:
[Node] Running "carpet_plot" ("CPAC.utils.interfaces.function.Function")
201113-05:29:22,289 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.carpet_plot".
201113-05:29:22,291 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___carpet" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_qc___carpet".
201113-05:29:22,298 nipype.workflow INFO:
[Node] Running "sinker_0_qc___carpet" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:29:22,511 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___carpet/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/carpet/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png
201113-05:29:22,528 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___carpet".
201113-05:29:22,529 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_mean_functional_to_standard".
201113-05:29:22,537 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:29:22,768 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_to_standard".
201113-05:29:22,769 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-05:29:22,778 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:29:25,243 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-05:29:25,246 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-05:29:25,253 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-071_ses-1_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/change_transform_type_0/updated_affine.txt
201113-05:29:27,712 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-05:29:27,714 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/sinker_0_functional_brain_mask_to_standard".
201113-05:29:27,721 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:29:27,951 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask_to_standard".
201113-05:29:27,953 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-2/inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-05:29:27,959 nipype.workflow INFO:
[Node] Running "inverse_transform_flags_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-05:29:28,193 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-05:29:28,195 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-05:29:28,206 nipype.workflow INFO:
[Node] Running "collect_transforms_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.base.Merge")
201113-05:29:28,435 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-05:29:28,436 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-05:29:28,441 nipype.workflow INFO:
[Node] Running "check_transformsfunctional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-05:29:28,675 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-05:29:28,677 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-05:29:28,687 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-05:29:31,437 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-05:29:31,439 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.write_composite_xfm_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/write_composite_xfm_functional_to_standard__t1_0".
201113-05:29:31,448 nipype.workflow INFO:
[Node] Running "write_composite_xfm_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output [ func_to_standard_xfm.nii.gz, 1 ] --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-05:40:58,806 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.write_composite_xfm_functional_to_standard__t1_0".
201113-05:40:58,809 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard_xfm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard_xfm".
201113-05:40:58,817 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:40:59,49 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard_xfm".
201113-05:40:59,52 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-05:40:59,64 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_freq_filtered_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/frequency_filtering_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/bandpassed_demeaned_filtered.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output bandpassed_demeaned_filtered_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-05:41:01,746 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-05:41:01,748 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0".
201113-05:41:01,756 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-05:52:49,241 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_to_standard__t1_0".
201113-05:52:49,244 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-05:52:49,251 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-05:52:49,707 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.resample_functional_roi_0".
201113-05:52:49,709 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-05:52:49,715 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-05:52:55,516 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats".
201113-05:52:55,518 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-05:52:55,522 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-05:52:55,765 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv".
201113-05:52:55,767 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-05:52:55,810 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-05:52:55,842 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-05:52:56,366 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-05:52:56,370 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.ndmg_graphs_0".
201113-05:52:56,371 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-05:52:56,378 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:52:56,612 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph".
201113-05:52:56,614 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-05:52:56,619 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-05:52:56,853 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz".
201113-05:52:56,854 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-05:52:56,862 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:52:57,94 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries".
201113-05:52:57,96 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-05:52:57,103 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-05:52:57,564 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.resample_functional_roi_0".
201113-05:52:57,566 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-05:52:57,574 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-05:53:03,391 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats".
201113-05:53:03,392 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-05:53:03,397 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-05:53:03,638 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv".
201113-05:53:03,639 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-05:53:03,682 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-05:53:03,717 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-05:53:04,242 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-05:53:04,245 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.ndmg_graphs_0".
201113-05:53:04,246 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-05:53:04,253 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:53:04,480 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph".
201113-05:53:04,483 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-05:53:04,488 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-05:53:04,721 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz".
201113-05:53:04,723 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-05:53:04,730 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:53:04,960 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries".
201113-05:53:04,962 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard".
201113-05:53:04,971 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-05:53:05,202 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard".
201113-05:53:05,204 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/apply_ants_warp_motion_correct_to_standard__t1_0".
201113-05:53:05,335 nipype.workflow INFO:
[Node] Running "apply_ants_warp_motion_correct_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-06:05:02,273 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0".
201113-06:05:02,276 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_motion_correct_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_motion_correct_to_standard".
201113-06:05:02,285 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:05:02,516 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_motion_correct_to_standard".
201113-06:05:02,517 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-06:05:02,528 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-06:05:10,48 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-06:05:10,50 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard__t1_0".
201113-06:05:10,59 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-06:05:17,524 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0".
201113-06:05:17,526 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mfi_0.resample_u" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_tgng_run-1/resample_u".
201113-06:05:17,535 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-06:05:18,252 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mfi_0.resample_u".
201113-06:05:18,254 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_tgng_run-1/montage_s".
201113-06:05:18,261 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_tgng_run-1/montage_s/mapflow/_montage_s0".
201113-06:05:18,266 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-06:05:20,18 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-06:05:20,22 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_s".
201113-06:05:20,22 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_qc___mean_func_with_mni_edge_s".
201113-06:05:20,30 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:05:20,242 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_mni_edge_s/_scan_tgng_run-1/_montage_s0/MNI_edge_on_mean_func_mni_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_mni_edge_s/_scan_tgng_run-1/_montage_s0/MNI_edge_on_mean_func_mni_s.png
201113-06:05:20,258 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_s".
201113-06:05:20,259 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_tgng_run-1/montage_a".
201113-06:05:20,266 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_tgng_run-1/montage_a/mapflow/_montage_a0".
201113-06:05:20,270 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-06:05:22,251 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-06:05:22,254 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_a".
201113-06:05:22,255 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_qc___mean_func_with_mni_edge_a".
201113-06:05:22,262 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:05:22,474 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_mni_edge_a/_scan_tgng_run-1/_montage_a0/MNI_edge_on_mean_func_mni_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_mni_edge_a/_scan_tgng_run-1/_montage_a0/MNI_edge_on_mean_func_mni_a.png
201113-06:05:22,490 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_a".
201113-06:05:22,492 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_resample" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-1/csf_resample".
201113-06:05:22,498 nipype.workflow INFO:
[Node] Running "csf_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_csf_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-1/csf_resample/avg152T1_csf_bin.nii.gz
201113-06:05:22,753 nipype.interface INFO:
stderr 2020-11-13T06:05:22.753752:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-06:05:22,754 nipype.interface INFO:
stderr 2020-11-13T06:05:22.754120: Warnings of this type will be muted for this session.
201113-06:05:22,754 nipype.interface INFO:
stderr 2020-11-13T06:05:22.754120: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-06:05:22,998 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_resample".
201113-06:05:22,999 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-1/csf_mask".
201113-06:05:23,5 nipype.workflow INFO:
[Node] Running "csf_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-1/csf_resample/avg152T1_csf_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_csf_bin_resample_calc.nii
201113-06:05:23,247 nipype.interface INFO:
stderr 2020-11-13T06:05:23.247462:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-06:05:23,247 nipype.interface INFO:
stderr 2020-11-13T06:05:23.247762:++ Authored by: A cast of thousands
201113-06:05:23,371 nipype.interface INFO:
stderr 2020-11-13T06:05:23.371585:++ Output dataset ./avg152T1_csf_bin_resample_calc.nii
201113-06:05:23,528 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_mask".
201113-06:05:23,530 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_resample" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-1/wm_resample".
201113-06:05:23,537 nipype.workflow INFO:
[Node] Running "wm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_white_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-1/wm_resample/avg152T1_white_bin.nii.gz
201113-06:05:23,783 nipype.interface INFO:
stderr 2020-11-13T06:05:23.783643:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-06:05:23,783 nipype.interface INFO:
stderr 2020-11-13T06:05:23.783962: Warnings of this type will be muted for this session.
201113-06:05:23,784 nipype.interface INFO:
stderr 2020-11-13T06:05:23.783962: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-06:05:24,15 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_resample".
201113-06:05:24,16 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-1/wm_mask".
201113-06:05:24,22 nipype.workflow INFO:
[Node] Running "wm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-1/wm_resample/avg152T1_white_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_white_bin_resample_calc.nii
201113-06:05:24,266 nipype.interface INFO:
stderr 2020-11-13T06:05:24.266639:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-06:05:24,266 nipype.interface INFO:
stderr 2020-11-13T06:05:24.266949:++ Authored by: A cast of thousands
201113-06:05:24,385 nipype.interface INFO:
stderr 2020-11-13T06:05:24.385347:++ Output dataset ./avg152T1_white_bin_resample_calc.nii
201113-06:05:24,544 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_mask".
201113-06:05:24,546 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_resample" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-1/gm_resample".
201113-06:05:24,553 nipype.workflow INFO:
[Node] Running "gm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_gray_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-1/gm_resample/avg152T1_gray_bin.nii.gz
201113-06:05:24,796 nipype.interface INFO:
stderr 2020-11-13T06:05:24.796329:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-06:05:24,796 nipype.interface INFO:
stderr 2020-11-13T06:05:24.796640: Warnings of this type will be muted for this session.
201113-06:05:24,796 nipype.interface INFO:
stderr 2020-11-13T06:05:24.796640: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-06:05:25,35 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_resample".
201113-06:05:25,36 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-1/gm_mask".
201113-06:05:25,42 nipype.workflow INFO:
[Node] Running "gm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-1/gm_resample/avg152T1_gray_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_gray_bin_resample_calc.nii
201113-06:05:25,286 nipype.interface INFO:
stderr 2020-11-13T06:05:25.286127:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-06:05:25,286 nipype.interface INFO:
stderr 2020-11-13T06:05:25.286430:++ Authored by: A cast of thousands
201113-06:05:25,404 nipype.interface INFO:
stderr 2020-11-13T06:05:25.404433:++ Output dataset ./avg152T1_gray_bin_resample_calc.nii
201113-06:05:25,560 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_mask".
201113-06:05:25,562 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.carpet_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_plot".
201113-06:05:25,569 nipype.workflow INFO:
[Node] Running "carpet_plot" ("CPAC.utils.interfaces.function.Function")
201113-06:05:31,246 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.carpet_plot".
201113-06:05:31,247 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___carpet" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_qc___carpet".
201113-06:05:31,254 nipype.workflow INFO:
[Node] Running "sinker_0_qc___carpet" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:05:31,466 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___carpet/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/carpet/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png
201113-06:05:31,485 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___carpet".
201113-06:05:31,486 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_mean_functional_to_standard".
201113-06:05:31,493 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:05:31,722 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_to_standard".
201113-06:05:31,723 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-06:05:31,745 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-06:05:34,265 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-06:05:34,267 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-06:05:34,276 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-071_ses-1_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/change_transform_type_0/updated_affine.txt
201113-06:05:36,755 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-06:05:36,756 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/sinker_0_functional_brain_mask_to_standard".
201113-06:05:36,764 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:05:36,992 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask_to_standard".
201113-06:05:36,994 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_tgng_run-1/inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-06:05:36,998 nipype.workflow INFO:
[Node] Running "inverse_transform_flags_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-06:05:37,228 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-06:05:37,229 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-06:05:37,260 nipype.workflow INFO:
[Node] Running "collect_transforms_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.base.Merge")
201113-06:05:37,491 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-06:05:37,493 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-06:05:37,497 nipype.workflow INFO:
[Node] Running "check_transformsfunctional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-06:05:37,734 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-06:05:37,735 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-06:05:37,765 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-06:05:40,859 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-06:05:40,862 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.write_composite_xfm_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/write_composite_xfm_functional_to_standard__t1_0".
201113-06:05:40,869 nipype.workflow INFO:
[Node] Running "write_composite_xfm_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output [ func_to_standard_xfm.nii.gz, 1 ] --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-06:17:55,13 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.write_composite_xfm_functional_to_standard__t1_0".
201113-06:17:55,15 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard_xfm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard_xfm".
201113-06:17:55,24 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:17:55,255 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard_xfm".
201113-06:17:55,256 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-06:17:55,265 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_freq_filtered_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/frequency_filtering_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/bandpassed_demeaned_filtered.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output bandpassed_demeaned_filtered_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-06:17:57,983 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-06:17:57,985 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0".
201113-06:17:57,992 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-06:30:34,510 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_to_standard__t1_0".
201113-06:30:34,513 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-06:30:34,519 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-06:30:34,973 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.resample_functional_roi_0".
201113-06:30:34,975 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-06:30:34,982 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-06:30:41,291 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats".
201113-06:30:41,292 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-06:30:41,297 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-06:30:41,537 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv".
201113-06:30:41,539 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-06:30:41,584 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-06:30:41,619 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-06:30:42,151 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-06:30:42,155 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.ndmg_graphs_0".
201113-06:30:42,155 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-06:30:42,162 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:30:42,391 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph".
201113-06:30:42,393 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-06:30:42,398 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-06:30:42,631 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz".
201113-06:30:42,633 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-06:30:42,640 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:30:42,871 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries".
201113-06:30:42,872 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-06:30:42,878 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-06:30:43,327 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.resample_functional_roi_0".
201113-06:30:43,329 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-06:30:43,335 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-06:30:49,692 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats".
201113-06:30:49,694 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-06:30:49,698 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-06:30:49,944 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv".
201113-06:30:49,945 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-06:30:49,991 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-06:30:50,27 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-06:30:50,555 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-06:30:50,559 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.ndmg_graphs_0".
201113-06:30:50,559 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-06:30:50,566 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:30:50,792 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph".
201113-06:30:50,794 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-06:30:50,798 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-06:30:51,31 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz".
201113-06:30:51,32 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-06:30:51,38 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:30:51,269 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries".
201113-06:30:51,271 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard".
201113-06:30:51,279 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:30:51,510 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard".
201113-06:30:51,512 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/apply_ants_warp_motion_correct_to_standard__t1_0".
201113-06:30:51,681 nipype.workflow INFO:
[Node] Running "apply_ants_warp_motion_correct_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_motion_correct_mcflirt/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-06:43:37,304 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0".
201113-06:43:37,306 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_motion_correct_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_motion_correct_to_standard".
201113-06:43:37,315 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:43:37,543 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_motion_correct_to_standard".
201113-06:43:37,545 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-06:43:37,583 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-06:43:45,77 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-06:43:45,79 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard__t1_0".
201113-06:43:45,87 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_ms_run-1/func_mean/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-06:43:52,449 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0".
201113-06:43:52,452 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mfi_0.resample_u" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_ms_run-1/resample_u".
201113-06:43:52,457 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-06:43:53,171 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mfi_0.resample_u".
201113-06:43:53,173 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_ms_run-1/montage_s".
201113-06:43:53,179 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_ms_run-1/montage_s/mapflow/_montage_s0".
201113-06:43:53,184 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-06:43:54,939 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-06:43:54,943 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_s".
201113-06:43:54,943 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_qc___mean_func_with_mni_edge_s".
201113-06:43:54,951 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:43:55,163 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_mni_edge_s/_scan_ms_run-1/_montage_s0/MNI_edge_on_mean_func_mni_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_mni_edge_s/_scan_ms_run-1/_montage_s0/MNI_edge_on_mean_func_mni_s.png
201113-06:43:55,180 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_s".
201113-06:43:55,182 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_ms_run-1/montage_a".
201113-06:43:55,189 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_ms_run-1/montage_a/mapflow/_montage_a0".
201113-06:43:55,194 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-06:43:57,181 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-06:43:57,185 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_a".
201113-06:43:57,186 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_qc___mean_func_with_mni_edge_a".
201113-06:43:57,193 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:43:57,404 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_mni_edge_a/_scan_ms_run-1/_montage_a0/MNI_edge_on_mean_func_mni_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_mni_edge_a/_scan_ms_run-1/_montage_a0/MNI_edge_on_mean_func_mni_a.png
201113-06:43:57,420 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_a".
201113-06:43:57,422 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_resample" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_ms_run-1/csf_resample".
201113-06:43:57,428 nipype.workflow INFO:
[Node] Running "csf_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_csf_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_ms_run-1/csf_resample/avg152T1_csf_bin.nii.gz
201113-06:43:57,676 nipype.interface INFO:
stderr 2020-11-13T06:43:57.676410:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-06:43:57,676 nipype.interface INFO:
stderr 2020-11-13T06:43:57.676746: Warnings of this type will be muted for this session.
201113-06:43:57,676 nipype.interface INFO:
stderr 2020-11-13T06:43:57.676746: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-06:43:57,912 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_resample".
201113-06:43:57,914 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_ms_run-1/csf_mask".
201113-06:43:57,919 nipype.workflow INFO:
[Node] Running "csf_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_ms_run-1/csf_resample/avg152T1_csf_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_csf_bin_resample_calc.nii
201113-06:43:58,164 nipype.interface INFO:
stderr 2020-11-13T06:43:58.164497:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-06:43:58,164 nipype.interface INFO:
stderr 2020-11-13T06:43:58.164803:++ Authored by: A cast of thousands
201113-06:43:58,285 nipype.interface INFO:
stderr 2020-11-13T06:43:58.285216:++ Output dataset ./avg152T1_csf_bin_resample_calc.nii
201113-06:43:58,442 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_mask".
201113-06:43:58,443 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_resample" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_ms_run-1/wm_resample".
201113-06:43:58,450 nipype.workflow INFO:
[Node] Running "wm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_white_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_ms_run-1/wm_resample/avg152T1_white_bin.nii.gz
201113-06:43:58,697 nipype.interface INFO:
stderr 2020-11-13T06:43:58.697069:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-06:43:58,697 nipype.interface INFO:
stderr 2020-11-13T06:43:58.697394: Warnings of this type will be muted for this session.
201113-06:43:58,697 nipype.interface INFO:
stderr 2020-11-13T06:43:58.697394: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-06:43:58,899 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_resample".
201113-06:43:58,901 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_ms_run-1/wm_mask".
201113-06:43:58,906 nipype.workflow INFO:
[Node] Running "wm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_ms_run-1/wm_resample/avg152T1_white_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_white_bin_resample_calc.nii
201113-06:43:59,148 nipype.interface INFO:
stderr 2020-11-13T06:43:59.148915:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-06:43:59,149 nipype.interface INFO:
stderr 2020-11-13T06:43:59.149230:++ Authored by: A cast of thousands
201113-06:43:59,246 nipype.interface INFO:
stderr 2020-11-13T06:43:59.246839:++ Output dataset ./avg152T1_white_bin_resample_calc.nii
201113-06:43:59,404 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_mask".
201113-06:43:59,406 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_resample" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_ms_run-1/gm_resample".
201113-06:43:59,413 nipype.workflow INFO:
[Node] Running "gm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_gray_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_ms_run-1/gm_resample/avg152T1_gray_bin.nii.gz
201113-06:43:59,658 nipype.interface INFO:
stderr 2020-11-13T06:43:59.658316:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-06:43:59,658 nipype.interface INFO:
stderr 2020-11-13T06:43:59.658640: Warnings of this type will be muted for this session.
201113-06:43:59,658 nipype.interface INFO:
stderr 2020-11-13T06:43:59.658640: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-06:43:59,852 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_resample".
201113-06:43:59,854 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_ms_run-1/gm_mask".
201113-06:43:59,859 nipype.workflow INFO:
[Node] Running "gm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_ms_run-1/gm_resample/avg152T1_gray_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_gray_bin_resample_calc.nii
201113-06:44:00,105 nipype.interface INFO:
stderr 2020-11-13T06:44:00.105057:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-06:44:00,105 nipype.interface INFO:
stderr 2020-11-13T06:44:00.105361:++ Authored by: A cast of thousands
201113-06:44:00,225 nipype.interface INFO:
stderr 2020-11-13T06:44:00.225407:++ Output dataset ./avg152T1_gray_bin_resample_calc.nii
201113-06:44:00,384 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_mask".
201113-06:44:00,386 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.carpet_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_plot".
201113-06:44:00,394 nipype.workflow INFO:
[Node] Running "carpet_plot" ("CPAC.utils.interfaces.function.Function")
201113-06:44:06,587 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.carpet_plot".
201113-06:44:06,589 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___carpet" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_qc___carpet".
201113-06:44:06,596 nipype.workflow INFO:
[Node] Running "sinker_0_qc___carpet" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:44:06,805 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___carpet/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/carpet/_scan_ms_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png
201113-06:44:06,824 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___carpet".
201113-06:44:06,826 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_mean_functional_to_standard".
201113-06:44:06,834 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:44:07,63 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_to_standard".
201113-06:44:07,65 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-06:44:07,74 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-06:44:09,575 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-06:44:09,577 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-06:44:09,585 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_ms_run-1/combine_masks/sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-071_ses-1_task-ms_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/change_transform_type_0/updated_affine.txt
201113-06:44:12,46 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-06:44:12,47 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/sinker_0_functional_brain_mask_to_standard".
201113-06:44:12,55 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:44:12,282 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask_to_standard".
201113-06:44:12,284 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_ms_run-1/inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-06:44:12,288 nipype.workflow INFO:
[Node] Running "inverse_transform_flags_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-06:44:12,517 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-06:44:12,518 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-06:44:12,527 nipype.workflow INFO:
[Node] Running "collect_transforms_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.base.Merge")
201113-06:44:12,752 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-06:44:12,754 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-06:44:12,758 nipype.workflow INFO:
[Node] Running "check_transformsfunctional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-06:44:12,989 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-06:44:12,991 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-06:44:13,37 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-06:44:15,781 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-06:44:15,784 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.write_composite_xfm_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/write_composite_xfm_functional_to_standard__t1_0".
201113-06:44:15,791 nipype.workflow INFO:
[Node] Running "write_composite_xfm_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output [ func_to_standard_xfm.nii.gz, 1 ] --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-06:52:50,153 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.write_composite_xfm_functional_to_standard__t1_0".
201113-06:52:50,155 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard_xfm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard_xfm".
201113-06:52:50,164 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-06:52:50,391 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard_xfm".
201113-06:52:50,393 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-06:52:50,404 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_freq_filtered_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/frequency_filtering_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/bandpassed_demeaned_filtered.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output bandpassed_demeaned_filtered_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-06:52:53,79 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-06:52:53,82 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0".
201113-06:52:53,89 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-07:01:42,650 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_to_standard__t1_0".
201113-07:01:42,653 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-07:01:42,660 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-07:01:43,113 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.resample_functional_roi_0".
201113-07:01:43,115 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-07:01:43,120 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-07:01:47,631 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats".
201113-07:01:47,633 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-07:01:47,637 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-07:01:47,873 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv".
201113-07:01:47,875 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-07:01:47,910 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-07:01:47,937 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-07:01:48,463 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-07:01:48,466 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.ndmg_graphs_0".
201113-07:01:48,467 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-07:01:48,474 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:01:48,704 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph".
201113-07:01:48,706 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-07:01:48,710 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-07:01:48,942 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz".
201113-07:01:48,944 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-07:01:48,950 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:01:49,182 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries".
201113-07:01:49,184 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-07:01:49,190 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-07:01:49,648 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.resample_functional_roi_0".
201113-07:01:49,649 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-07:01:49,657 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-07:01:54,171 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats".
201113-07:01:54,173 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-07:01:54,177 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-07:01:54,422 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv".
201113-07:01:54,424 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-07:01:54,461 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-07:01:54,488 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-07:01:55,11 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-07:01:55,16 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.ndmg_graphs_0".
201113-07:01:55,16 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-07:01:55,24 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:01:55,252 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph".
201113-07:01:55,254 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-07:01:55,258 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-07:01:55,492 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz".
201113-07:01:55,493 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-07:01:55,500 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:01:55,732 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries".
201113-07:01:55,734 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard".
201113-07:01:55,741 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:01:55,972 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard".
201113-07:01:55,974 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/apply_ants_warp_motion_correct_to_standard__t1_0".
201113-07:01:56,89 nipype.workflow INFO:
[Node] Running "apply_ants_warp_motion_correct_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_motion_correct_mcflirt/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-07:10:51,992 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0".
201113-07:10:51,995 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_motion_correct_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_motion_correct_to_standard".
201113-07:10:52,4 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:10:52,238 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_motion_correct_to_standard".
201113-07:10:52,240 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-07:10:52,255 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-07:10:59,679 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-07:10:59,681 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard__t1_0".
201113-07:10:59,689 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-3/func_mean/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-07:11:07,69 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0".
201113-07:11:07,72 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mfi_0.resample_u" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_matching_run-3/resample_u".
201113-07:11:07,76 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-07:11:07,782 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mfi_0.resample_u".
201113-07:11:07,784 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_matching_run-3/montage_s".
201113-07:11:07,790 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_matching_run-3/montage_s/mapflow/_montage_s0".
201113-07:11:07,794 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-07:11:09,554 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-07:11:09,558 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_s".
201113-07:11:09,559 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_qc___mean_func_with_mni_edge_s".
201113-07:11:09,568 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:11:09,782 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_mni_edge_s/_scan_matching_run-3/_montage_s0/MNI_edge_on_mean_func_mni_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_mni_edge_s/_scan_matching_run-3/_montage_s0/MNI_edge_on_mean_func_mni_s.png
201113-07:11:09,799 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_s".
201113-07:11:09,801 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_matching_run-3/montage_a".
201113-07:11:09,808 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_matching_run-3/montage_a/mapflow/_montage_a0".
201113-07:11:09,812 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-07:11:11,797 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-07:11:11,800 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_a".
201113-07:11:11,800 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_qc___mean_func_with_mni_edge_a".
201113-07:11:11,808 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:11:12,21 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_mni_edge_a/_scan_matching_run-3/_montage_a0/MNI_edge_on_mean_func_mni_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_mni_edge_a/_scan_matching_run-3/_montage_a0/MNI_edge_on_mean_func_mni_a.png
201113-07:11:12,38 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_a".
201113-07:11:12,39 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_resample" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-3/csf_resample".
201113-07:11:12,46 nipype.workflow INFO:
[Node] Running "csf_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_csf_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-3/csf_resample/avg152T1_csf_bin.nii.gz
201113-07:11:12,298 nipype.interface INFO:
stderr 2020-11-13T07:11:12.298656:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-07:11:12,299 nipype.interface INFO:
stderr 2020-11-13T07:11:12.299010: Warnings of this type will be muted for this session.
201113-07:11:12,299 nipype.interface INFO:
stderr 2020-11-13T07:11:12.299010: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-07:11:12,543 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_resample".
201113-07:11:12,545 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-3/csf_mask".
201113-07:11:12,550 nipype.workflow INFO:
[Node] Running "csf_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-3/csf_resample/avg152T1_csf_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_csf_bin_resample_calc.nii
201113-07:11:12,797 nipype.interface INFO:
stderr 2020-11-13T07:11:12.797633:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-07:11:12,798 nipype.interface INFO:
stderr 2020-11-13T07:11:12.797983:++ Authored by: A cast of thousands
201113-07:11:12,934 nipype.interface INFO:
stderr 2020-11-13T07:11:12.934786:++ Output dataset ./avg152T1_csf_bin_resample_calc.nii
201113-07:11:13,93 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_mask".
201113-07:11:13,95 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_resample" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-3/wm_resample".
201113-07:11:13,102 nipype.workflow INFO:
[Node] Running "wm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_white_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-3/wm_resample/avg152T1_white_bin.nii.gz
201113-07:11:13,350 nipype.interface INFO:
stderr 2020-11-13T07:11:13.350851:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-07:11:13,351 nipype.interface INFO:
stderr 2020-11-13T07:11:13.351225: Warnings of this type will be muted for this session.
201113-07:11:13,351 nipype.interface INFO:
stderr 2020-11-13T07:11:13.351225: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-07:11:13,565 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_resample".
201113-07:11:13,566 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-3/wm_mask".
201113-07:11:13,571 nipype.workflow INFO:
[Node] Running "wm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-3/wm_resample/avg152T1_white_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_white_bin_resample_calc.nii
201113-07:11:13,818 nipype.interface INFO:
stderr 2020-11-13T07:11:13.818694:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-07:11:13,819 nipype.interface INFO:
stderr 2020-11-13T07:11:13.819045:++ Authored by: A cast of thousands
201113-07:11:13,911 nipype.interface INFO:
stderr 2020-11-13T07:11:13.911628:++ Output dataset ./avg152T1_white_bin_resample_calc.nii
201113-07:11:14,71 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_mask".
201113-07:11:14,73 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_resample" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-3/gm_resample".
201113-07:11:14,79 nipype.workflow INFO:
[Node] Running "gm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_gray_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-3/gm_resample/avg152T1_gray_bin.nii.gz
201113-07:11:14,327 nipype.interface INFO:
stderr 2020-11-13T07:11:14.327393:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-07:11:14,327 nipype.interface INFO:
stderr 2020-11-13T07:11:14.327742: Warnings of this type will be muted for this session.
201113-07:11:14,327 nipype.interface INFO:
stderr 2020-11-13T07:11:14.327742: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-07:11:14,548 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_resample".
201113-07:11:14,549 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-3/gm_mask".
201113-07:11:14,557 nipype.workflow INFO:
[Node] Running "gm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-3/gm_resample/avg152T1_gray_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_gray_bin_resample_calc.nii
201113-07:11:14,809 nipype.interface INFO:
stderr 2020-11-13T07:11:14.809600:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-07:11:14,809 nipype.interface INFO:
stderr 2020-11-13T07:11:14.809965:++ Authored by: A cast of thousands
201113-07:11:14,904 nipype.interface INFO:
stderr 2020-11-13T07:11:14.904289:++ Output dataset ./avg152T1_gray_bin_resample_calc.nii
201113-07:11:15,64 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_mask".
201113-07:11:15,65 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.carpet_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_plot".
201113-07:11:15,72 nipype.workflow INFO:
[Node] Running "carpet_plot" ("CPAC.utils.interfaces.function.Function")
201113-07:11:19,498 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.carpet_plot".
201113-07:11:19,500 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___carpet" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_qc___carpet".
201113-07:11:19,507 nipype.workflow INFO:
[Node] Running "sinker_0_qc___carpet" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:11:19,721 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___carpet/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/carpet/_scan_matching_run-3/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png
201113-07:11:19,740 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___carpet".
201113-07:11:19,742 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_mean_functional_to_standard".
201113-07:11:19,750 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:11:19,981 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_to_standard".
201113-07:11:19,983 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-07:11:20,13 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-07:11:22,524 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-07:11:22,526 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-07:11:22,533 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-3/combine_masks/sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-071_ses-1_task-matching_run-3_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/change_transform_type_0/updated_affine.txt
201113-07:11:25,13 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-07:11:25,16 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/sinker_0_functional_brain_mask_to_standard".
201113-07:11:25,23 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:11:25,252 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask_to_standard".
201113-07:11:25,253 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-3/inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-07:11:25,258 nipype.workflow INFO:
[Node] Running "inverse_transform_flags_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-07:11:25,488 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-07:11:25,489 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-07:11:25,529 nipype.workflow INFO:
[Node] Running "collect_transforms_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.base.Merge")
201113-07:11:25,762 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-07:11:25,764 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-07:11:25,769 nipype.workflow INFO:
[Node] Running "check_transformsfunctional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-07:11:26,2 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-07:11:26,4 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-07:11:26,36 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-07:11:28,756 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-07:11:28,758 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.write_composite_xfm_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/write_composite_xfm_functional_to_standard__t1_0".
201113-07:11:28,767 nipype.workflow INFO:
[Node] Running "write_composite_xfm_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output [ func_to_standard_xfm.nii.gz, 1 ] --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-07:20:02,747 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.write_composite_xfm_functional_to_standard__t1_0".
201113-07:20:02,750 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard_xfm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard_xfm".
201113-07:20:02,758 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:20:02,989 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard_xfm".
201113-07:20:02,991 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-07:20:03,3 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_freq_filtered_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/frequency_filtering_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/bandpassed_demeaned_filtered.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output bandpassed_demeaned_filtered_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-07:20:05,741 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-07:20:05,744 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0".
201113-07:20:05,753 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-07:28:54,325 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_to_standard__t1_0".
201113-07:28:54,327 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-07:28:54,334 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-07:28:54,782 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.resample_functional_roi_0".
201113-07:28:54,784 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-07:28:54,790 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-07:28:59,326 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats".
201113-07:28:59,327 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-07:28:59,332 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-07:28:59,573 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv".
201113-07:28:59,574 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-07:28:59,610 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-07:28:59,637 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-07:29:00,163 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-07:29:00,168 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.ndmg_graphs_0".
201113-07:29:00,168 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-07:29:00,175 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:29:00,409 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph".
201113-07:29:00,410 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-07:29:00,415 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-07:29:00,645 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz".
201113-07:29:00,646 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-07:29:00,652 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:29:00,883 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries".
201113-07:29:00,885 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-07:29:00,891 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-07:29:01,342 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.resample_functional_roi_0".
201113-07:29:01,344 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-07:29:01,349 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-07:29:05,846 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats".
201113-07:29:05,848 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-07:29:05,852 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-07:29:06,92 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv".
201113-07:29:06,93 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-07:29:06,130 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-07:29:06,157 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-07:29:06,674 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-07:29:06,678 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.ndmg_graphs_0".
201113-07:29:06,678 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-07:29:06,686 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:29:06,914 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph".
201113-07:29:06,916 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-07:29:06,919 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-07:29:07,150 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz".
201113-07:29:07,152 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-07:29:07,159 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:29:07,389 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries".
201113-07:29:07,392 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard".
201113-07:29:07,399 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:29:07,630 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard".
201113-07:29:07,632 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/apply_ants_warp_motion_correct_to_standard__t1_0".
201113-07:29:07,744 nipype.workflow INFO:
[Node] Running "apply_ants_warp_motion_correct_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_motion_correct_mcflirt/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-07:38:02,256 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0".
201113-07:38:02,259 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_motion_correct_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_motion_correct_to_standard".
201113-07:38:02,267 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:38:02,499 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_motion_correct_to_standard".
201113-07:38:02,500 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-07:38:02,524 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-07:38:09,986 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-07:38:09,988 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard__t1_0".
201113-07:38:09,995 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-2/func_mean/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-07:38:17,389 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0".
201113-07:38:17,392 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mfi_0.resample_u" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_matching_run-2/resample_u".
201113-07:38:17,397 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-07:38:18,103 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mfi_0.resample_u".
201113-07:38:18,105 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_matching_run-2/montage_s".
201113-07:38:18,111 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_matching_run-2/montage_s/mapflow/_montage_s0".
201113-07:38:18,116 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-07:38:19,871 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-07:38:19,875 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_s".
201113-07:38:19,876 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_qc___mean_func_with_mni_edge_s".
201113-07:38:19,883 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:38:20,94 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_mni_edge_s/_scan_matching_run-2/_montage_s0/MNI_edge_on_mean_func_mni_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_mni_edge_s/_scan_matching_run-2/_montage_s0/MNI_edge_on_mean_func_mni_s.png
201113-07:38:20,110 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_s".
201113-07:38:20,112 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_matching_run-2/montage_a".
201113-07:38:20,118 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_matching_run-2/montage_a/mapflow/_montage_a0".
201113-07:38:20,123 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-07:38:22,111 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-07:38:22,115 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_a".
201113-07:38:22,115 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_qc___mean_func_with_mni_edge_a".
201113-07:38:22,122 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:38:22,333 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_mni_edge_a/_scan_matching_run-2/_montage_a0/MNI_edge_on_mean_func_mni_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_mni_edge_a/_scan_matching_run-2/_montage_a0/MNI_edge_on_mean_func_mni_a.png
201113-07:38:22,350 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_a".
201113-07:38:22,352 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_resample" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-2/csf_resample".
201113-07:38:22,359 nipype.workflow INFO:
[Node] Running "csf_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_csf_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-2/csf_resample/avg152T1_csf_bin.nii.gz
201113-07:38:22,609 nipype.interface INFO:
stderr 2020-11-13T07:38:22.609042:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-07:38:22,609 nipype.interface INFO:
stderr 2020-11-13T07:38:22.609409: Warnings of this type will be muted for this session.
201113-07:38:22,609 nipype.interface INFO:
stderr 2020-11-13T07:38:22.609409: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-07:38:22,845 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_resample".
201113-07:38:22,846 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-2/csf_mask".
201113-07:38:22,853 nipype.workflow INFO:
[Node] Running "csf_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-2/csf_resample/avg152T1_csf_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_csf_bin_resample_calc.nii
201113-07:38:23,97 nipype.interface INFO:
stderr 2020-11-13T07:38:23.097032:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-07:38:23,97 nipype.interface INFO:
stderr 2020-11-13T07:38:23.097358:++ Authored by: A cast of thousands
201113-07:38:23,218 nipype.interface INFO:
stderr 2020-11-13T07:38:23.218728:++ Output dataset ./avg152T1_csf_bin_resample_calc.nii
201113-07:38:23,373 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_mask".
201113-07:38:23,375 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_resample" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-2/wm_resample".
201113-07:38:23,382 nipype.workflow INFO:
[Node] Running "wm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_white_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-2/wm_resample/avg152T1_white_bin.nii.gz
201113-07:38:23,634 nipype.interface INFO:
stderr 2020-11-13T07:38:23.634670:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-07:38:23,635 nipype.interface INFO:
stderr 2020-11-13T07:38:23.634990: Warnings of this type will be muted for this session.
201113-07:38:23,635 nipype.interface INFO:
stderr 2020-11-13T07:38:23.634990: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-07:38:23,845 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_resample".
201113-07:38:23,846 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-2/wm_mask".
201113-07:38:23,852 nipype.workflow INFO:
[Node] Running "wm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-2/wm_resample/avg152T1_white_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_white_bin_resample_calc.nii
201113-07:38:24,98 nipype.interface INFO:
stderr 2020-11-13T07:38:24.098013:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-07:38:24,98 nipype.interface INFO:
stderr 2020-11-13T07:38:24.098349:++ Authored by: A cast of thousands
201113-07:38:24,215 nipype.interface INFO:
stderr 2020-11-13T07:38:24.215566:++ Output dataset ./avg152T1_white_bin_resample_calc.nii
201113-07:38:24,368 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_mask".
201113-07:38:24,369 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_resample" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-2/gm_resample".
201113-07:38:24,376 nipype.workflow INFO:
[Node] Running "gm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_gray_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-2/gm_resample/avg152T1_gray_bin.nii.gz
201113-07:38:24,622 nipype.interface INFO:
stderr 2020-11-13T07:38:24.622056:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-07:38:24,622 nipype.interface INFO:
stderr 2020-11-13T07:38:24.622369: Warnings of this type will be muted for this session.
201113-07:38:24,622 nipype.interface INFO:
stderr 2020-11-13T07:38:24.622369: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-07:38:24,811 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_resample".
201113-07:38:24,813 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-2/gm_mask".
201113-07:38:24,818 nipype.workflow INFO:
[Node] Running "gm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-2/gm_resample/avg152T1_gray_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_gray_bin_resample_calc.nii
201113-07:38:25,62 nipype.interface INFO:
stderr 2020-11-13T07:38:25.062897:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-07:38:25,63 nipype.interface INFO:
stderr 2020-11-13T07:38:25.063212:++ Authored by: A cast of thousands
201113-07:38:25,156 nipype.interface INFO:
stderr 2020-11-13T07:38:25.156147:++ Output dataset ./avg152T1_gray_bin_resample_calc.nii
201113-07:38:25,320 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_mask".
201113-07:38:25,322 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.carpet_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_plot".
201113-07:38:25,329 nipype.workflow INFO:
[Node] Running "carpet_plot" ("CPAC.utils.interfaces.function.Function")
201113-07:38:29,773 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.carpet_plot".
201113-07:38:29,775 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___carpet" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_qc___carpet".
201113-07:38:29,783 nipype.workflow INFO:
[Node] Running "sinker_0_qc___carpet" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:38:29,993 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___carpet/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/carpet/_scan_matching_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png
201113-07:38:30,10 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___carpet".
201113-07:38:30,12 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_mean_functional_to_standard".
201113-07:38:30,19 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:38:30,253 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_to_standard".
201113-07:38:30,256 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-07:38:30,295 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-07:38:32,783 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-07:38:32,785 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-07:38:32,793 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-2/combine_masks/sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-071_ses-1_task-matching_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/change_transform_type_0/updated_affine.txt
201113-07:38:35,259 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-07:38:35,262 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/sinker_0_functional_brain_mask_to_standard".
201113-07:38:35,270 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:38:35,500 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask_to_standard".
201113-07:38:35,502 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-2/inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-07:38:35,508 nipype.workflow INFO:
[Node] Running "inverse_transform_flags_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-07:38:35,738 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-07:38:35,739 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-07:38:35,774 nipype.workflow INFO:
[Node] Running "collect_transforms_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.base.Merge")
201113-07:38:36,6 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.collect_transforms_functional_brain_mask_to_standard__t1_0".
201113-07:38:36,7 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-07:38:36,11 nipype.workflow INFO:
[Node] Running "check_transformsfunctional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-07:38:36,243 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.check_transformsfunctional_brain_mask_to_standard__t1_0".
201113-07:38:36,245 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-07:38:36,288 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-07:38:39,35 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_nuisance_residuals_to_standard__t1_0".
201113-07:38:39,37 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.write_composite_xfm_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/write_composite_xfm_functional_to_standard__t1_0".
201113-07:38:39,44 nipype.workflow INFO:
[Node] Running "write_composite_xfm_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output [ func_to_standard_xfm.nii.gz, 1 ] --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-07:47:13,197 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.write_composite_xfm_functional_to_standard__t1_0".
201113-07:47:13,200 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard_xfm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard_xfm".
201113-07:47:13,208 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:47:13,438 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard_xfm".
201113-07:47:13,439 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-07:47:13,465 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_freq_filtered_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/frequency_filtering_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/frequency_filter/bandpassed_demeaned_filtered.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output bandpassed_demeaned_filtered_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-07:47:16,199 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_freq_filtered_to_standard__t1_0".
201113-07:47:16,202 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0".
201113-07:47:16,211 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/nuisance_regression_after-filt_0_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/nuisance_regression/residuals.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output residuals_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-07:56:04,961 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_to_standard__t1_0".
201113-07:56:04,963 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-07:56:04,970 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-07:56:05,419 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.resample_functional_roi_0".
201113-07:56:05,420 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-07:56:05,426 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-07:56:09,986 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats".
201113-07:56:09,988 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-07:56:09,992 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-07:56:10,231 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv".
201113-07:56:10,233 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-07:56:10,268 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-07:56:10,296 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-07:56:10,825 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-07:56:10,829 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.ndmg_graphs_0".
201113-07:56:10,829 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-07:56:10,836 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:56:11,64 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph".
201113-07:56:11,65 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-07:56:11,69 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-07:56:11,303 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz".
201113-07:56:11,305 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-07:56:11,312 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:56:11,544 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries".
201113-07:56:11,545 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.resample_functional_roi_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0".
201113-07:56:11,552 nipype.workflow INFO:
[Node] Running "resample_functional_roi_0" ("CPAC.utils.interfaces.function.Function")
201113-07:56:11,999 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.resample_functional_roi_0".
201113-07:56:12,2 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/3dROIstats".
201113-07:56:12,8 nipype.workflow INFO:
[Node] Running "3dROIstats" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/resample_functional_roi_0/Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_resampled.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/apply_ants_warp_functional_to_standard__t1_0/residuals_antswarp.nii.gz
201113-07:56:16,506 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.3dROIstats".
201113-07:56:16,508 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/clean_roi_csv".
201113-07:56:16,513 nipype.workflow INFO:
[Node] Running "clean_roi_csv" ("nipype.interfaces.utility.wrappers.Function")
201113-07:56:16,753 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.clean_roi_csv".
201113-07:56:16,754 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.ndmg_graphs_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0".
201113-07:56:16,790 nipype.workflow INFO:
[Node] Setting-up "_ndmg_graphs_00" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/ndmg_graphs_0/mapflow/_ndmg_graphs_00".
201113-07:56:16,817 nipype.workflow INFO:
[Node] Running "_ndmg_graphs_00" ("CPAC.utils.interfaces.function.Function")
Estimating correlation matrix for 7 ROIs...
201113-07:56:17,340 nipype.workflow INFO:
[Node] Finished "_ndmg_graphs_00".
201113-07:56:17,344 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.ndmg_graphs_0".
201113-07:56:17,344 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_ndmg_graph".
201113-07:56:17,351 nipype.workflow INFO:
[Node] Running "sinker_0_ndmg_graph" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:56:17,583 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_ndmg_graph".
201113-07:56:17,585 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz" in "/outputs/tmp/resting_preproc_sub-071_ses-1/roi_timeseries_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/write_roi_npz".
201113-07:56:17,590 nipype.workflow INFO:
[Node] Running "write_roi_npz" ("nipype.interfaces.utility.wrappers.Function")
201113-07:56:17,823 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.roi_timeseries_0.write_roi_npz".
201113-07:56:17,825 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/sinker_0_roi_timeseries".
201113-07:56:17,833 nipype.workflow INFO:
[Node] Running "sinker_0_roi_timeseries" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:56:18,63 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_roi_timeseries".
201113-07:56:18,65 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_functional_to_standard".
201113-07:56:18,73 nipype.workflow INFO:
[Node] Running "sinker_0_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-07:56:18,304 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_to_standard".
201113-07:56:18,306 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/apply_ants_warp_motion_correct_to_standard__t1_0".
201113-07:56:18,425 nipype.workflow INFO:
[Node] Running "apply_ants_warp_motion_correct_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_motion_correct_mcflirt/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz --input-image-type 3 --interpolation LanczosWindowedSinc --output sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-08:05:13,984 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_motion_correct_to_standard__t1_0".
201113-08:05:13,986 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_motion_correct_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_motion_correct_to_standard".
201113-08:05:13,995 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:05:14,225 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_motion_correct_to_standard".
201113-08:05:14,226 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-08:05:14,246 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-08:05:21,683 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard_derivative__t1_0".
201113-08:05:21,685 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard__t1_0".
201113-08:05:21,693 nipype.workflow INFO:
[Node] Running "apply_ants_warp_mean_functional_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/_scan_matching_run-1/func_mean/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz --input-image-type 0 --interpolation LanczosWindowedSinc --output sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz --reference-image /usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-08:05:29,74 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_mean_functional_to_standard__t1_0".
201113-08:05:29,76 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mfi_0.resample_u" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_matching_run-1/resample_u".
201113-08:05:29,82 nipype.workflow INFO:
[Node] Running "resample_u" ("CPAC.utils.interfaces.function.Function")
201113-08:05:29,793 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mfi_0.resample_u".
201113-08:05:29,794 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_matching_run-1/montage_s".
201113-08:05:29,801 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_matching_run-1/montage_s/mapflow/_montage_s0".
201113-08:05:29,806 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-08:05:31,565 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-08:05:31,568 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_s".
201113-08:05:31,568 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_qc___mean_func_with_mni_edge_s".
201113-08:05:31,575 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:05:31,789 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_mni_edge_s/_scan_matching_run-1/_montage_s0/MNI_edge_on_mean_func_mni_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_mni_edge_s/_scan_matching_run-1/_montage_s0/MNI_edge_on_mean_func_mni_s.png
201113-08:05:31,806 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_s".
201113-08:05:31,807 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_matching_run-1/montage_a".
201113-08:05:31,814 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mfi_0/_scan_matching_run-1/montage_a/mapflow/_montage_a0".
201113-08:05:31,819 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-08:05:33,814 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-08:05:33,819 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mfi_0.montage_a".
201113-08:05:33,819 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_qc___mean_func_with_mni_edge_a".
201113-08:05:33,828 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mean_func_with_mni_edge_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:05:34,41 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mean_func_with_mni_edge_a/_scan_matching_run-1/_montage_a0/MNI_edge_on_mean_func_mni_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mean_func_with_mni_edge_a/_scan_matching_run-1/_montage_a0/MNI_edge_on_mean_func_mni_a.png
201113-08:05:34,58 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mean_func_with_mni_edge_a".
201113-08:05:34,59 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_resample" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-1/csf_resample".
201113-08:05:34,66 nipype.workflow INFO:
[Node] Running "csf_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_csf_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-1/csf_resample/avg152T1_csf_bin.nii.gz
201113-08:05:34,314 nipype.interface INFO:
stderr 2020-11-13T08:05:34.314039:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-08:05:34,314 nipype.interface INFO:
stderr 2020-11-13T08:05:34.314417: Warnings of this type will be muted for this session.
201113-08:05:34,314 nipype.interface INFO:
stderr 2020-11-13T08:05:34.314417: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-08:05:34,536 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_resample".
201113-08:05:34,537 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-1/csf_mask".
201113-08:05:34,543 nipype.workflow INFO:
[Node] Running "csf_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-1/csf_resample/avg152T1_csf_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_csf_bin_resample_calc.nii
201113-08:05:34,791 nipype.interface INFO:
stderr 2020-11-13T08:05:34.791881:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:05:34,792 nipype.interface INFO:
stderr 2020-11-13T08:05:34.792262:++ Authored by: A cast of thousands
201113-08:05:34,885 nipype.interface INFO:
stderr 2020-11-13T08:05:34.885316:++ Output dataset ./avg152T1_csf_bin_resample_calc.nii
201113-08:05:35,45 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.csf_mask".
201113-08:05:35,47 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_resample" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-1/wm_resample".
201113-08:05:35,53 nipype.workflow INFO:
[Node] Running "wm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_white_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-1/wm_resample/avg152T1_white_bin.nii.gz
201113-08:05:35,298 nipype.interface INFO:
stderr 2020-11-13T08:05:35.298816:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-08:05:35,299 nipype.interface INFO:
stderr 2020-11-13T08:05:35.299165: Warnings of this type will be muted for this session.
201113-08:05:35,299 nipype.interface INFO:
stderr 2020-11-13T08:05:35.299165: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-08:05:35,499 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_resample".
201113-08:05:35,500 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-1/wm_mask".
201113-08:05:35,505 nipype.workflow INFO:
[Node] Running "wm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-1/wm_resample/avg152T1_white_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_white_bin_resample_calc.nii
201113-08:05:35,749 nipype.interface INFO:
stderr 2020-11-13T08:05:35.749176:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:05:35,749 nipype.interface INFO:
stderr 2020-11-13T08:05:35.749518:++ Authored by: A cast of thousands
201113-08:05:35,842 nipype.interface INFO:
stderr 2020-11-13T08:05:35.842763:++ Output dataset ./avg152T1_white_bin_resample_calc.nii
201113-08:05:36,7 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.wm_mask".
201113-08:05:36,9 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_resample" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-1/gm_resample".
201113-08:05:36,16 nipype.workflow INFO:
[Node] Running "gm_resample" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -master /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz -prefix avg152T1_gray_bin_resample.nii -inset /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-1/gm_resample/avg152T1_gray_bin.nii.gz
201113-08:05:36,261 nipype.interface INFO:
stderr 2020-11-13T08:05:36.261398:** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/apply_ants_warp_mean_functional_to_standard__t1_0/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat_antswarp.nii.gz to FLOAT32
201113-08:05:36,261 nipype.interface INFO:
stderr 2020-11-13T08:05:36.261735: Warnings of this type will be muted for this session.
201113-08:05:36,261 nipype.interface INFO:
stderr 2020-11-13T08:05:36.261735: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-08:05:36,477 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_resample".
201113-08:05:36,478 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-1/gm_mask".
201113-08:05:36,484 nipype.workflow INFO:
[Node] Running "gm_mask" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-1/gm_resample/avg152T1_gray_bin_resample.nii -expr "astep(a, 0.5)" -prefix avg152T1_gray_bin_resample_calc.nii
201113-08:05:36,729 nipype.interface INFO:
stderr 2020-11-13T08:05:36.729907:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:05:36,730 nipype.interface INFO:
stderr 2020-11-13T08:05:36.730254:++ Authored by: A cast of thousands
201113-08:05:36,863 nipype.interface INFO:
stderr 2020-11-13T08:05:36.863341:++ Output dataset ./avg152T1_gray_bin_resample_calc.nii
201113-08:05:37,21 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.gm_mask".
201113-08:05:37,23 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.carpet_seg_0.carpet_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-1/carpet_seg_0/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_plot".
201113-08:05:37,30 nipype.workflow INFO:
[Node] Running "carpet_plot" ("CPAC.utils.interfaces.function.Function")
201113-08:05:41,481 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.carpet_seg_0.carpet_plot".
201113-08:05:41,483 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___carpet" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/sinker_0_qc___carpet".
201113-08:05:41,490 nipype.workflow INFO:
[Node] Running "sinker_0_qc___carpet" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:05:41,702 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___carpet/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/carpet/_scan_matching_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/carpet_seg.png
201113-08:05:41,719 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___carpet".
201113-08:05:41,721 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_mean_functional_to_standard".
201113-08:05:41,728 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:05:41,958 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_mean_functional_to_standard".
201113-08:05:41,959 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-08:05:41,989 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-08:05:44,481 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard_derivative__t1_0".
201113-08:05:44,483 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-08:05:44,490 nipype.workflow INFO:
[Node] Running "apply_ants_warp_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --dimensionality 3 --float 0 --input /outputs/tmp/resting_preproc_sub-071_ses-1/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_matching_run-1/combine_masks/sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz --input-image-type 0 --interpolation NearestNeighbor --output sub-071_ses-1_task-matching_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_antswarp.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-071_ses-1/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform1Warp.nii.gz --transform /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat --transform /outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/change_transform_type_0/updated_affine.txt
201113-08:05:46,976 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.apply_ants_warp_functional_brain_mask_to_standard__t1_0".
201113-08:05:46,978 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask_to_standard" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/sinker_0_functional_brain_mask_to_standard".
201113-08:05:46,986 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask_to_standard" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:05:47,214 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_functional_brain_mask_to_standard".
201113-08:05:47,216 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/_scan_matching_run-1/inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-08:05:47,221 nipype.workflow INFO:
[Node] Running "inverse_transform_flags_functional_brain_mask_to_standard__t1_0" ("nipype.interfaces.utility.wrappers.Function")
201113-08:05:47,453 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.inverse_transform_flags_functional_brain_mask_to_standard__t1_0".
201113-08:05:47,455 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.seg_preproc_0.GM.GM_collect_linear_transforms" in "/outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/GM/GM_collect_linear_transforms".
201113-08:05:47,463 nipype.workflow INFO:
[Node] Running "GM_collect_linear_transforms" ("nipype.interfaces.utility.base.Merge")
201113-08:05:47,691 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.seg_preproc_0.GM.GM_collect_linear_transforms".
201113-08:05:47,693 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.seg_preproc_0.GM.GM_check_transforms" in "/outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/GM/GM_check_transforms".
201113-08:05:47,697 nipype.workflow INFO:
[Node] Running "GM_check_transforms" ("nipype.interfaces.utility.wrappers.Function")
201113-08:05:47,929 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.seg_preproc_0.GM.GM_check_transforms".
201113-08:05:47,931 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.seg_preproc_0.GM.GM_inverse_transform_flags" in "/outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/GM/GM_inverse_transform_flags".
201113-08:05:47,935 nipype.workflow INFO:
[Node] Running "GM_inverse_transform_flags" ("nipype.interfaces.utility.wrappers.Function")
201113-08:05:48,165 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.seg_preproc_0.GM.GM_inverse_transform_flags".
201113-08:05:48,167 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.seg_preproc_0.GM.GM_prior_mni_to_t1" in "/outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/GM/GM_prior_mni_to_t1".
201113-08:05:48,197 nipype.workflow INFO:
[Node] Running "GM_prior_mni_to_t1" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 0 --input /usr/share/fsl/5.0/data/standard/tissuepriors/2mm/avg152T1_gray_bin.nii.gz --interpolation NearestNeighbor --output avg152T1_gray_bin_trans.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz --transform [ /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat, 1 ]
201113-08:05:49,593 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.seg_preproc_0.GM.GM_prior_mni_to_t1".
201113-08:05:49,595 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.seg_preproc_0.WM.WM_collect_linear_transforms" in "/outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/WM/WM_collect_linear_transforms".
201113-08:05:49,600 nipype.workflow INFO:
[Node] Running "WM_collect_linear_transforms" ("nipype.interfaces.utility.base.Merge")
201113-08:05:49,828 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.seg_preproc_0.WM.WM_collect_linear_transforms".
201113-08:05:49,829 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.seg_preproc_0.WM.WM_check_transforms" in "/outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/WM/WM_check_transforms".
201113-08:05:49,833 nipype.workflow INFO:
[Node] Running "WM_check_transforms" ("nipype.interfaces.utility.wrappers.Function")
201113-08:05:50,60 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.seg_preproc_0.WM.WM_check_transforms".
201113-08:05:50,62 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.seg_preproc_0.WM.WM_inverse_transform_flags" in "/outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/WM/WM_inverse_transform_flags".
201113-08:05:50,66 nipype.workflow INFO:
[Node] Running "WM_inverse_transform_flags" ("nipype.interfaces.utility.wrappers.Function")
201113-08:05:50,291 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.seg_preproc_0.WM.WM_inverse_transform_flags".
201113-08:05:50,293 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.seg_preproc_0.WM.WM_prior_mni_to_t1" in "/outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/WM/WM_prior_mni_to_t1".
201113-08:05:50,301 nipype.workflow INFO:
[Node] Running "WM_prior_mni_to_t1" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 0 --input /usr/share/fsl/5.0/data/standard/tissuepriors/2mm/avg152T1_white_bin.nii.gz --interpolation NearestNeighbor --output avg152T1_white_bin_trans.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz --transform [ /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat, 1 ]
201113-08:05:51,656 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.seg_preproc_0.WM.WM_prior_mni_to_t1".
201113-08:05:51,658 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.seg_preproc_0.CSF.CSF_collect_linear_transforms" in "/outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/CSF/CSF_collect_linear_transforms".
201113-08:05:51,664 nipype.workflow INFO:
[Node] Running "CSF_collect_linear_transforms" ("nipype.interfaces.utility.base.Merge")
201113-08:05:51,890 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.seg_preproc_0.CSF.CSF_collect_linear_transforms".
201113-08:05:51,891 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.seg_preproc_0.CSF.CSF_check_transforms" in "/outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/CSF/CSF_check_transforms".
201113-08:05:51,896 nipype.workflow INFO:
[Node] Running "CSF_check_transforms" ("nipype.interfaces.utility.wrappers.Function")
201113-08:05:52,122 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.seg_preproc_0.CSF.CSF_check_transforms".
201113-08:05:52,124 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.seg_preproc_0.CSF.CSF_inverse_transform_flags" in "/outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/CSF/CSF_inverse_transform_flags".
201113-08:05:52,128 nipype.workflow INFO:
[Node] Running "CSF_inverse_transform_flags" ("nipype.interfaces.utility.wrappers.Function")
201113-08:05:52,359 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.seg_preproc_0.CSF.CSF_inverse_transform_flags".
201113-08:05:52,361 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.seg_preproc_0.CSF.CSF_prior_mni_to_t1" in "/outputs/tmp/resting_preproc_sub-071_ses-1/seg_preproc_0/CSF/CSF_prior_mni_to_t1".
201113-08:05:52,370 nipype.workflow INFO:
[Node] Running "CSF_prior_mni_to_t1" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --default-value 0 --float 0 --input /usr/share/fsl/5.0/data/standard/tissuepriors/2mm/avg152T1_csf_bin.nii.gz --interpolation NearestNeighbor --output avg152T1_csf_bin_trans.nii.gz --reference-image /outputs/tmp/resting_preproc_sub-071_ses-1/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/copy_xform/sub-071_ses-1_T1w_resample_corrected_masked_xform.nii.gz --transform [ /outputs/tmp/resting_preproc_sub-071_ses-1/anat_mni_ants_register_0/calc_ants_warp/transform0GenericAffine.mat, 1 ]
201113-08:05:53,690 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.seg_preproc_0.CSF.CSF_prior_mni_to_t1".
201113-08:05:53,692 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_ants_initial_xfm" in "/outputs/tmp/resting_preproc_sub-071_ses-1/sinker_0_ants_initial_xfm".
201113-08:05:53,699 nipype.workflow INFO:
[Node] Running "sinker_0_ants_initial_xfm" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:05:53,928 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_ants_initial_xfm".
201113-08:05:53,929 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.anat_template_edge_0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/anat_template_edge_0".
201113-08:05:53,963 nipype.workflow INFO:
[Node] Running "anat_template_edge_0" ("CPAC.utils.interfaces.function.Function")
201113-08:05:56,111 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.anat_template_edge_0".
201113-08:05:56,113 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mni_anat_0.resample_o" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mni_anat_0/resample_o".
201113-08:05:56,117 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-08:05:56,684 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mni_anat_0.resample_o".
201113-08:05:56,685 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mni_anat_0.montage_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mni_anat_0/montage_s".
201113-08:05:56,692 nipype.workflow INFO:
[Node] Setting-up "_montage_s0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mni_anat_0/montage_s/mapflow/_montage_s0".
201113-08:05:56,696 nipype.workflow INFO:
[Node] Running "_montage_s0" ("CPAC.utils.interfaces.function.Function")
201113-08:05:58,680 nipype.workflow INFO:
[Node] Finished "_montage_s0".
201113-08:05:58,684 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mni_anat_0.montage_s".
201113-08:05:58,684 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mni_normalized_anatomical_s" in "/outputs/tmp/resting_preproc_sub-071_ses-1/sinker_0_qc___mni_normalized_anatomical_s".
201113-08:05:58,691 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mni_normalized_anatomical_s" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:05:58,903 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mni_normalized_anatomical_s/_montage_s0/mni_anat_s.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mni_normalized_anatomical_s/_montage_s0/mni_anat_s.png
201113-08:05:58,919 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mni_normalized_anatomical_s".
201113-08:05:58,921 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.montage_mni_anat_0.montage_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mni_anat_0/montage_a".
201113-08:05:58,927 nipype.workflow INFO:
[Node] Setting-up "_montage_a0" in "/outputs/tmp/resting_preproc_sub-071_ses-1/montage_mni_anat_0/montage_a/mapflow/_montage_a0".
201113-08:05:58,931 nipype.workflow INFO:
[Node] Running "_montage_a0" ("CPAC.utils.interfaces.function.Function")
201113-08:06:01,119 nipype.workflow INFO:
[Node] Finished "_montage_a0".
201113-08:06:01,122 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.montage_mni_anat_0.montage_a".
201113-08:06:01,123 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.sinker_0_qc___mni_normalized_anatomical_a" in "/outputs/tmp/resting_preproc_sub-071_ses-1/sinker_0_qc___mni_normalized_anatomical_a".
201113-08:06:01,130 nipype.workflow INFO:
[Node] Running "sinker_0_qc___mni_normalized_anatomical_a" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:06:01,342 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc___mni_normalized_anatomical_a/_montage_a0/mni_anat_a.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-1/qc/mni_normalized_anatomical_a/_montage_a0/mni_anat_a.png
201113-08:06:01,360 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.sinker_0_qc___mni_normalized_anatomical_a".
201113-08:06:01,362 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.check_for_s3_acpc_template_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-1/check_for_s3_acpc_template_brain".
201113-08:06:01,366 nipype.workflow INFO:
[Node] Running "check_for_s3_acpc_template_brain" ("CPAC.utils.interfaces.function.Function")
201113-08:06:01,593 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.check_for_s3_acpc_template_brain".
201113-08:06:01,594 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-1.check_for_s3_acpc_template_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-1/check_for_s3_acpc_template_skull".
201113-08:06:01,598 nipype.workflow INFO:
[Node] Running "check_for_s3_acpc_template_skull" ("CPAC.utils.interfaces.function.Function")
201113-08:06:01,872 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-1.check_for_s3_acpc_template_skull".
201113-08:06:25,256 nipype.workflow INFO:
End of subject workflow resting_preproc_sub-071_ses-1
CPAC run complete:
Pipeline configuration: cpac_fmriprep-options
Subject workflow: resting_preproc_sub-071_ses-1
Elapsed run time (minutes): 601.3090590198834
Timing information saved in /outputs/log/cpac_individual_timing_cpac_fmriprep-options.csv
System time of start: 2020-11-12 22:05:12
System time of completion: 2020-11-13 08:06:25
201113-08:06:25,271 nipype.workflow INFO:
C-PAC version: 1.7.2
Setting maximum number of cores per participant to 1
Setting number of participants at once to 1
Setting OMP_NUM_THREADS to 1
Setting MKL_NUM_THREADS to 1
Setting ANTS/ITK thread usage to 1
Maximum potential number of cores that might be used during this run: 1
201113-08:06:27,572 nipype.workflow INFO:
Pipeline building completed.
201113-08:06:27,572 nipype.workflow INFO:
Strategy forks:
- cpac_fmriprep-options
201113-08:06:30,253 nipype.workflow INFO:
Workflow resting_preproc_sub-071_ses-2 settings: ['check', 'execution', 'logging', 'monitoring']
201113-08:06:31,386 nipype.workflow INFO:
Running serially.
201113-08:06:31,395 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_vigilance_run-2/select_scan_params".
201113-08:06:31,423 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-08:06:31,658 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.select_scan_params".
201113-08:06:31,669 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_vigilance_run-2/s3_scan_params".
201113-08:06:31,676 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-08:06:31,903 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.s3_scan_params".
201113-08:06:31,906 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/scan_params_0".
201113-08:06:31,915 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-08:06:32,153 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.scan_params_0".
201113-08:06:32,155 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_vigilance_run-2/selectrest".
201113-08:06:32,188 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-08:06:32,425 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.selectrest".
201113-08:06:32,435 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_vigilance_run-2/check_for_s3".
201113-08:06:32,441 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-08:06:32,720 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.check_for_s3".
201113-08:06:32,721 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-071_ses-2/edit_func_0/_scan_vigilance_run-2/func_get_idx".
201113-08:06:32,728 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-08:06:32,963 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.edit_func_0.func_get_idx".
201113-08:06:32,965 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-071_ses-2/edit_func_0/_scan_vigilance_run-2/func_drop_trs".
201113-08:06:32,972 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-071/ses-2/func/sub-071_ses-2_task-vigilance_run-2_bold.nii.gz[0..68] -expr "a" -prefix sub-071_ses-2_task-vigilance_run-2_bold_calc.nii.gz
201113-08:06:33,229 nipype.interface INFO:
stderr 2020-11-13T08:06:33.229871:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:06:33,230 nipype.interface INFO:
stderr 2020-11-13T08:06:33.230307:++ Authored by: A cast of thousands
201113-08:06:36,228 nipype.interface INFO:
stderr 2020-11-13T08:06:36.228880:++ Output dataset ./sub-071_ses-2_task-vigilance_run-2_bold_calc.nii.gz
201113-08:06:36,412 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.edit_func_0.func_drop_trs".
201113-08:06:36,414 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique".
201113-08:06:36,445 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-071_ses-2_task-vigilance_run-2_bold_calc.nii.gz
201113-08:06:36,690 nipype.interface INFO:
stderr 2020-11-13T08:06:36.690833:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:06:36,691 nipype.interface INFO:
stderr 2020-11-13T08:06:36.691180:++ Authored by: RW Cox
201113-08:06:36,704 nipype.interface INFO:
stderr 2020-11-13T08:06:36.703967:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-071_ses-2_task-vigilance_run-2_bold_calc.nii.gz
201113-08:06:36,705 nipype.interface INFO:
stderr 2020-11-13T08:06:36.705279: + deoblique
201113-08:06:36,705 nipype.interface INFO:
stderr 2020-11-13T08:06:36.705601: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-071_ses-2_task-vigilance_run-2_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-071_ses-2_task-vigilance_run-2_bold_calc.nii.gz in NIFTI storage)
201113-08:06:38,767 nipype.interface INFO:
stderr 2020-11-13T08:06:38.767277:++ 3drefit processed 1 datasets
201113-08:06:38,974 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-08:06:38,976 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_reorient".
201113-08:06:38,985 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-2_task-vigilance_run-2_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_reorient/sub-071_ses-2_task-vigilance_run-2_bold_calc.nii.gz
201113-08:06:41,550 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-08:06:41,551 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_RPI".
201113-08:06:41,557 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_RPI/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample.nii.gz
201113-08:06:41,803 nipype.interface INFO:
stderr 2020-11-13T08:06:41.803776:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:06:41,804 nipype.interface INFO:
stderr 2020-11-13T08:06:41.804093:++ Authored by: KR Hammett & RW Cox
201113-08:06:42,72 nipype.interface INFO:
stderr 2020-11-13T08:06:42.072928:++ Output dataset ./sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_tstat.nii.gz
201113-08:06:42,247 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-08:06:42,248 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_generate_ref".
201113-08:06:42,255 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-2_task-vigilance_run-2_bold_calc_resample.1D -1Dmatrix_save sub-071_ses-2_task-vigilance_run-2_bold_calc_resample.aff12.1D -prefix sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_RPI/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_generate_ref/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample.nii.gz
201113-08:06:42,497 nipype.interface INFO:
stderr 2020-11-13T08:06:42.497217:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:06:42,497 nipype.interface INFO:
stderr 2020-11-13T08:06:42.497522:++ Authored by: RW Cox
201113-08:06:42,507 nipype.interface INFO:
stderr 2020-11-13T08:06:42.507006:++ Coarse del was 10, replaced with 3
201113-08:07:40,298 nipype.interface INFO:
stderr 2020-11-13T08:07:40.298446:++ Max displacement in automask = 7.19 (mm) at sub-brick 44
201113-08:07:40,298 nipype.interface INFO:
stderr 2020-11-13T08:07:40.298904:++ Max delta displ in automask = 6.72 (mm) at sub-brick 45
201113-08:07:42,338 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-08:07:42,340 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_motion".
201113-08:07:42,346 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_motion/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_volreg.nii.gz
201113-08:07:42,597 nipype.interface INFO:
stderr 2020-11-13T08:07:42.596963:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:07:42,597 nipype.interface INFO:
stderr 2020-11-13T08:07:42.597373:++ Authored by: KR Hammett & RW Cox
201113-08:07:42,871 nipype.interface INFO:
stderr 2020-11-13T08:07:42.871803:++ Output dataset ./sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_volreg_tstat.nii.gz
201113-08:07:43,49 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-08:07:43,50 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_motion_correct_mcflirt".
201113-08:07:43,58 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_reorient/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_motion_correct_mcflirt/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_motion/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-08:07:55,559 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-08:07:55,566 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/calculate_FDJ".
201113-08:07:55,573 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201113-08:07:55,804 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201113-08:07:55,805 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/sinker_0_frame_wise_displacement_jenkinson".
201113-08:07:55,813 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:07:56,48 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201113-08:07:56,49 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/sinker_0_max_displacement".
201113-08:07:56,60 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:07:56,293 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_max_displacement".
201113-08:07:56,295 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/sinker_0_coordinate_transformation".
201113-08:07:56,310 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:07:56,558 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_coordinate_transformation".
201113-08:07:56,566 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_mean_skull".
201113-08:07:56,573 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_mean_skull/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf.nii.gz
201113-08:07:56,830 nipype.interface INFO:
stderr 2020-11-13T08:07:56.830459:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:07:56,830 nipype.interface INFO:
stderr 2020-11-13T08:07:56.830831:++ Authored by: KR Hammett & RW Cox
201113-08:07:57,126 nipype.interface INFO:
stderr 2020-11-13T08:07:57.126849:++ Output dataset ./sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat.nii.gz
201113-08:07:57,307 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-08:07:57,308 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass".
201113-08:07:57,314 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_mean_skull/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-08:07:59,139 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-08:07:59,141 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_dilate".
201113-08:07:59,147 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_dilate/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-08:07:59,841 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-08:07:59,843 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_mask".
201113-08:07:59,849 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_dilate/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_mask/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-08:08:00,301 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-08:08:00,302 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/unifize".
201113-08:08:00,310 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/unifize/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-08:08:00,557 nipype.interface INFO:
stderr 2020-11-13T08:08:00.557040:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:09:18,104 nipype.interface INFO:
stderr 2020-11-13T08:09:18.104115: + Pre-processing: IAV..UW[s4704]Im
201113-08:09:18,120 nipype.interface INFO:
stderr 2020-11-13T08:09:18.120361:++ Output dataset ./uni.nii.gz
201113-08:09:18,120 nipype.interface INFO:
stderr 2020-11-13T08:09:18.120640:++ ===== Elapsed = 77.6 sec
201113-08:09:18,329 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-08:09:18,331 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass".
201113-08:09:18,337 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass/uni.nii.gz
201113-08:09:18,584 nipype.interface INFO:
stderr 2020-11-13T08:09:18.584848:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:09:18,585 nipype.interface INFO:
stderr 2020-11-13T08:09:18.585299:++ Authored by: Emperor Zhark
201113-08:09:18,587 nipype.interface INFO:
stderr 2020-11-13T08:09:18.587443:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass/uni.nii.gz
201113-08:09:18,591 nipype.interface INFO:
stderr 2020-11-13T08:09:18.591522:++ Forming automask
201113-08:09:18,593 nipype.interface INFO:
stderr 2020-11-13T08:09:18.593282: + Fixed clip level = 401.101227
201113-08:09:18,597 nipype.interface INFO:
stderr 2020-11-13T08:09:18.597596: + Used gradual clip level = 366.907501 .. 476.030212
201113-08:09:18,597 nipype.interface INFO:
stderr 2020-11-13T08:09:18.597851: + Number voxels above clip level = 31977
201113-08:09:18,598 nipype.interface INFO:
stderr 2020-11-13T08:09:18.598048: + Clustering voxels ...
201113-08:09:18,599 nipype.interface INFO:
stderr 2020-11-13T08:09:18.599522: + Largest cluster has 31976 voxels
201113-08:09:18,601 nipype.interface INFO:
stderr 2020-11-13T08:09:18.601332: + Clustering voxels ...
201113-08:09:18,602 nipype.interface INFO:
stderr 2020-11-13T08:09:18.602471: + Largest cluster has 31669 voxels
201113-08:09:18,605 nipype.interface INFO:
stderr 2020-11-13T08:09:18.605858: + Filled 728 voxels in small holes; now have 32397 voxels
201113-08:09:18,610 nipype.interface INFO:
stderr 2020-11-13T08:09:18.610353: + Filled 5 voxels in large holes; now have 32402 voxels
201113-08:09:18,611 nipype.interface INFO:
stderr 2020-11-13T08:09:18.611645: + Clustering voxels ...
201113-08:09:18,612 nipype.interface INFO:
stderr 2020-11-13T08:09:18.612754: + Largest cluster has 32401 voxels
201113-08:09:18,612 nipype.interface INFO:
stderr 2020-11-13T08:09:18.612980: + Clustering non-brain voxels ...
201113-08:09:18,613 nipype.interface INFO:
stderr 2020-11-13T08:09:18.613134: + Clustering voxels ...
201113-08:09:18,616 nipype.interface INFO:
stderr 2020-11-13T08:09:18.615983: + Largest cluster has 106730 voxels
201113-08:09:18,616 nipype.interface INFO:
stderr 2020-11-13T08:09:18.616314: + Mask now has 32534 voxels
201113-08:09:18,616 nipype.interface INFO:
stderr 2020-11-13T08:09:18.616465:++ Dilating automask
201113-08:09:18,622 nipype.interface INFO:
stderr 2020-11-13T08:09:18.622889: + Clustering voxels ...
201113-08:09:18,625 nipype.interface INFO:
stderr 2020-11-13T08:09:18.625266: + Largest cluster has 100606 voxels
201113-08:09:18,625 nipype.interface INFO:
stderr 2020-11-13T08:09:18.625598:++ 38658 voxels in the mask [out of 139264: 27.76%]
201113-08:09:18,625 nipype.interface INFO:
stderr 2020-11-13T08:09:18.625783:++ first 11 x-planes are zero [from R]
201113-08:09:18,625 nipype.interface INFO:
stderr 2020-11-13T08:09:18.625945:++ last 9 x-planes are zero [from L]
201113-08:09:18,626 nipype.interface INFO:
stderr 2020-11-13T08:09:18.626090:++ first 0 y-planes are zero [from P]
201113-08:09:18,626 nipype.interface INFO:
stderr 2020-11-13T08:09:18.626242:++ last 10 y-planes are zero [from A]
201113-08:09:18,626 nipype.interface INFO:
stderr 2020-11-13T08:09:18.626377:++ first 0 z-planes are zero [from I]
201113-08:09:18,626 nipype.interface INFO:
stderr 2020-11-13T08:09:18.626510:++ last 1 z-planes are zero [from S]
201113-08:09:18,630 nipype.interface INFO:
stderr 2020-11-13T08:09:18.630927:++ Output dataset ./uni_mask.nii.gz
201113-08:09:18,631 nipype.interface INFO:
stderr 2020-11-13T08:09:18.631151:++ applying mask to original data
201113-08:09:18,632 nipype.interface INFO:
stderr 2020-11-13T08:09:18.632010:++ Writing masked data
201113-08:09:18,646 nipype.interface INFO:
stderr 2020-11-13T08:09:18.646737:++ Output dataset ./uni_masked.nii.gz
201113-08:09:18,647 nipype.interface INFO:
stderr 2020-11-13T08:09:18.647068:++ CPU time = 0.000000 sec
201113-08:09:18,827 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-08:09:18,828 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/combine_masks".
201113-08:09:18,835 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/combine_masks/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:09:19,259 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-08:09:19,261 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/cal_DVARS".
201113-08:09:19,268 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201113-08:09:19,734 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201113-08:09:19,736 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_extract_brain".
201113-08:09:19,745 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_motion_correct_mcflirt/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/combine_masks/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-08:09:19,989 nipype.interface INFO:
stderr 2020-11-13T08:09:19.989009:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:09:19,989 nipype.interface INFO:
stderr 2020-11-13T08:09:19.989336:++ Authored by: A cast of thousands
201113-08:09:21,484 nipype.interface INFO:
stderr 2020-11-13T08:09:21.484712:++ Output dataset ./sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-08:09:21,662 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-08:09:21,663 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_normalize".
201113-08:09:21,669 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_extract_brain/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_normalize/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201113-08:09:23,51 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-08:09:23,53 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mask_normalize".
201113-08:09:23,59 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_normalize/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mask_normalize/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-08:09:23,814 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-08:09:23,816 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mean".
201113-08:09:23,822 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mean/sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-08:09:24,65 nipype.interface INFO:
stderr 2020-11-13T08:09:24.065664:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:09:24,65 nipype.interface INFO:
stderr 2020-11-13T08:09:24.065962:++ Authored by: KR Hammett & RW Cox
201113-08:09:24,239 nipype.interface INFO:
stderr 2020-11-13T08:09:24.239476:++ Output dataset ./sub-071_ses-2_task-vigilance_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz
201113-08:09:24,416 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201113-08:09:24,418 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/norm_motion_params".
201113-08:09:24,424 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-08:09:24,654 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-08:09:24,656 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/qc_motion_0/_scan_vigilance_run-2/motion_plot".
201113-08:09:24,660 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201113-08:09:25,106 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.qc_motion_0.motion_plot".
201113-08:09:25,108 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/sinker_0_qc___movement_trans_plot".
201113-08:09:25,115 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:09:25,325 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc___movement_trans_plot/_scan_vigilance_run-2/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc/movement_trans_plot/_scan_vigilance_run-2/motion_trans_plot.png
201113-08:09:25,343 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_trans_plot".
201113-08:09:25,345 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/sinker_0_qc___movement_rot_plot".
201113-08:09:25,353 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:09:25,564 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc___movement_rot_plot/_scan_vigilance_run-2/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc/movement_rot_plot/_scan_vigilance_run-2/motion_rot_plot.png
201113-08:09:25,583 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_rot_plot".
201113-08:09:25,585 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/calc_motion_parameters".
201113-08:09:25,591 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201113-08:09:25,825 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201113-08:09:25,826 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/sinker_0_motion_params".
201113-08:09:25,834 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:09:26,63 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_motion_params".
201113-08:09:26,65 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/calculate_FD".
201113-08:09:26,70 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201113-08:09:26,306 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201113-08:09:26,307 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/sinker_0_frame_wise_displacement_power".
201113-08:09:26,315 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:09:26,545 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_power".
201113-08:09:26,547 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/calc_power_parameters".
201113-08:09:26,553 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201113-08:09:26,787 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201113-08:09:26,788 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/sinker_0_power_params".
201113-08:09:26,796 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:09:27,25 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_power_params".
201113-08:09:27,27 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/sinker_0_movement_parameters".
201113-08:09:27,34 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:09:27,264 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_movement_parameters".
201113-08:09:27,265 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/func_despiked_0".
201113-08:09:27,272 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-071_ses-2_task-vigilance_run-2_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/func_despiked_0/sub-071_ses-2_task-vigilance_run-2_bold_calc.nii.gz
201113-08:09:27,532 nipype.interface INFO:
stderr 2020-11-13T08:09:27.532416:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:09:27,532 nipype.interface INFO:
stderr 2020-11-13T08:09:27.532903:++ Authored by: RW Cox
201113-08:09:27,536 nipype.interface INFO:
stderr 2020-11-13T08:09:27.536741:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-08:09:27,537 nipype.interface INFO:
stderr 2020-11-13T08:09:27.536741: such as /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/func_despiked_0/sub-071_ses-2_task-vigilance_run-2_bold_calc.nii.gz,
201113-08:09:27,537 nipype.interface INFO:
stderr 2020-11-13T08:09:27.536741: or viewing/combining it with volumes of differing obliquity,
201113-08:09:27,537 nipype.interface INFO:
stderr 2020-11-13T08:09:27.536741: you should consider running:
201113-08:09:27,537 nipype.interface INFO:
stderr 2020-11-13T08:09:27.536741: 3dWarp -deoblique
201113-08:09:27,537 nipype.interface INFO:
stderr 2020-11-13T08:09:27.536741: on this and other oblique datasets in the same session.
201113-08:09:27,537 nipype.interface INFO:
stderr 2020-11-13T08:09:27.536741: See 3dWarp -help for details.
201113-08:09:27,538 nipype.interface INFO:
stderr 2020-11-13T08:09:27.538072:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/func_despiked_0/sub-071_ses-2_task-vigilance_run-2_bold_calc.nii.gz is 30.880365 degrees from plumb.
201113-08:09:27,538 nipype.interface INFO:
stderr 2020-11-13T08:09:27.538370:++ Input dataset is in short format, but output will be in float format
201113-08:09:27,538 nipype.interface INFO:
stderr 2020-11-13T08:09:27.538635:++ ignoring first 0 time points, using last 69
201113-08:09:27,538 nipype.interface INFO:
stderr 2020-11-13T08:09:27.538895:++ using 69 time points => -corder 2
201113-08:09:27,539 nipype.interface INFO:
stderr 2020-11-13T08:09:27.539168:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/func_despiked_0/sub-071_ses-2_task-vigilance_run-2_bold_calc.nii.gz
201113-08:09:27,793 nipype.interface INFO:
stderr 2020-11-13T08:09:27.793565:++ 36324 voxels in the automask [out of 139264 in dataset]
201113-08:09:27,798 nipype.interface INFO:
stderr 2020-11-13T08:09:27.798942:++ 59802 voxels in the dilated automask [out of 139264 in dataset]
201113-08:09:27,804 nipype.interface INFO:
stderr 2020-11-13T08:09:27.804923:++ Procesing time series with OLD model fit algorithm
201113-08:09:27,805 nipype.interface INFO:
stderr 2020-11-13T08:09:27.805110:++ smash edit thresholds: 3.1 .. 5.0 MADs
201113-08:09:27,805 nipype.interface INFO:
stderr 2020-11-13T08:09:27.805273: + [ 3.457% .. 0.072% of normal distribution]
201113-08:09:27,805 nipype.interface INFO:
stderr 2020-11-13T08:09:27.805422: + [ 8.839% .. 3.125% of Laplace distribution]
201113-08:09:27,805 nipype.interface INFO:
stderr 2020-11-13T08:09:27.805575:++ start OpenMP thread #0
201113-08:09:29,632 nipype.interface INFO:
stderr 2020-11-13T08:09:29.632726:..........................
201113-08:09:29,633 nipype.interface INFO:
stderr 2020-11-13T08:09:29.633009:++ Elapsed despike time = 1s 827ms
201113-08:09:29,633 nipype.interface INFO:
stderr 2020-11-13T08:09:29.633162:
201113-08:09:29,633 nipype.interface INFO:
stderr 2020-11-13T08:09:29.633722:++ FINAL: 4126338 data points, 431676 edits [10.461%], 175551 big edits [4.254%]
201113-08:09:31,805 nipype.interface INFO:
stderr 2020-11-13T08:09:31.805133:++ Output dataset ./sub-071_ses-2_task-vigilance_run-2_bold_calc_despike.nii.gz
201113-08:09:31,997 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_despiked_0".
201113-08:09:31,998 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-2/slice_timing".
201113-08:09:32,5 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-08:09:32,6 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-2/slice_timing/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike.nii.gz
201113-08:09:32,215 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-08:09:32,249 nipype.interface INFO:
stderr 2020-11-13T08:09:32.249479:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:09:32,251 nipype.interface INFO:
stderr 2020-11-13T08:09:32.251714:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-08:09:32,251 nipype.interface INFO:
stderr 2020-11-13T08:09:32.251714: such as /outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-2/slice_timing/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike.nii.gz,
201113-08:09:32,251 nipype.interface INFO:
stderr 2020-11-13T08:09:32.251714: or viewing/combining it with volumes of differing obliquity,
201113-08:09:32,252 nipype.interface INFO:
stderr 2020-11-13T08:09:32.251714: you should consider running:
201113-08:09:32,252 nipype.interface INFO:
stderr 2020-11-13T08:09:32.251714: 3dWarp -deoblique
201113-08:09:32,252 nipype.interface INFO:
stderr 2020-11-13T08:09:32.251714: on this and other oblique datasets in the same session.
201113-08:09:32,252 nipype.interface INFO:
stderr 2020-11-13T08:09:32.251714: See 3dWarp -help for details.
201113-08:09:32,252 nipype.interface INFO:
stderr 2020-11-13T08:09:32.252425:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-2/slice_timing/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike.nii.gz is 30.880365 degrees from plumb.
201113-08:09:35,126 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_slice_timing_correction_0.slice_timing".
201113-08:09:35,128 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique".
201113-08:09:35,163 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift.nii.gz
201113-08:09:35,409 nipype.interface INFO:
stderr 2020-11-13T08:09:35.409113:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:09:35,409 nipype.interface INFO:
stderr 2020-11-13T08:09:35.409451:++ Authored by: RW Cox
201113-08:09:35,411 nipype.interface INFO:
stderr 2020-11-13T08:09:35.411688:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift.nii.gz
201113-08:09:35,412 nipype.interface INFO:
stderr 2020-11-13T08:09:35.412304: + deoblique
201113-08:09:35,412 nipype.interface INFO:
stderr 2020-11-13T08:09:35.412491: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_deoblique/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201113-08:09:36,576 nipype.interface INFO:
stderr 2020-11-13T08:09:36.576246:++ 3drefit processed 1 datasets
201113-08:09:36,753 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-08:09:36,754 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_reorient".
201113-08:09:36,760 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_reorient/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift.nii.gz
201113-08:09:38,495 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-08:09:38,496 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_RPI".
201113-08:09:38,502 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_RPI/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample.nii.gz
201113-08:09:38,744 nipype.interface INFO:
stderr 2020-11-13T08:09:38.744918:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:09:38,745 nipype.interface INFO:
stderr 2020-11-13T08:09:38.745222:++ Authored by: KR Hammett & RW Cox
201113-08:09:39,73 nipype.interface INFO:
stderr 2020-11-13T08:09:39.073235:++ Output dataset ./sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz
201113-08:09:39,254 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-08:09:39,256 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_generate_ref".
201113-08:09:39,264 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_RPI/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_generate_ref/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample.nii.gz
201113-08:09:39,508 nipype.interface INFO:
stderr 2020-11-13T08:09:39.508340:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:09:39,508 nipype.interface INFO:
stderr 2020-11-13T08:09:39.508655:++ Authored by: RW Cox
201113-08:09:39,516 nipype.interface INFO:
stderr 2020-11-13T08:09:39.516290:++ Coarse del was 10, replaced with 3
201113-08:10:37,206 nipype.interface INFO:
stderr 2020-11-13T08:10:37.206551:++ Max displacement in automask = 2.07 (mm) at sub-brick 58
201113-08:10:37,207 nipype.interface INFO:
stderr 2020-11-13T08:10:37.207152:++ Max delta displ in automask = 2.10 (mm) at sub-brick 35
201113-08:10:39,851 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-08:10:39,853 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_motion".
201113-08:10:39,859 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_motion/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz
201113-08:10:40,114 nipype.interface INFO:
stderr 2020-11-13T08:10:40.114376:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:10:40,114 nipype.interface INFO:
stderr 2020-11-13T08:10:40.114686:++ Authored by: KR Hammett & RW Cox
201113-08:10:40,552 nipype.interface INFO:
stderr 2020-11-13T08:10:40.552714:++ Output dataset ./sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201113-08:10:40,733 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-08:10:40,735 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_motion_correct_mcflirt".
201113-08:10:40,742 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_reorient/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_motion_correct_mcflirt/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_get_mean_motion/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-08:10:52,241 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-08:10:52,246 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/sinker_0_motion_correct".
201113-08:10:52,255 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:10:52,482 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_motion_correct".
201113-08:10:52,484 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_mean_skull".
201113-08:10:52,491 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_mean_skull/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz
201113-08:10:52,736 nipype.interface INFO:
stderr 2020-11-13T08:10:52.736373:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:10:52,736 nipype.interface INFO:
stderr 2020-11-13T08:10:52.736686:++ Authored by: KR Hammett & RW Cox
201113-08:10:53,85 nipype.interface INFO:
stderr 2020-11-13T08:10:53.085233:++ Output dataset ./sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201113-08:10:53,268 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-08:10:53,269 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass".
201113-08:10:53,275 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_mean_skull/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-08:10:55,121 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-08:10:55,122 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_dilate".
201113-08:10:55,128 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_dilate/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-08:10:55,805 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-08:10:55,807 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_mask".
201113-08:10:55,812 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_dilate/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_mask/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-08:10:56,263 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-08:10:56,265 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/unifize".
201113-08:10:56,271 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/unifize/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-08:10:56,515 nipype.interface INFO:
stderr 2020-11-13T08:10:56.515389:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:12:14,5 nipype.interface INFO:
stderr 2020-11-13T08:12:14.005771: + Pre-processing: IAV..UW[s4608]Im
201113-08:12:14,21 nipype.interface INFO:
stderr 2020-11-13T08:12:14.021756:++ Output dataset ./uni.nii.gz
201113-08:12:14,21 nipype.interface INFO:
stderr 2020-11-13T08:12:14.021976:++ ===== Elapsed = 77.5 sec
201113-08:12:14,227 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-08:12:14,228 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass".
201113-08:12:14,235 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass/uni.nii.gz
201113-08:12:14,487 nipype.interface INFO:
stderr 2020-11-13T08:12:14.487365:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:12:14,487 nipype.interface INFO:
stderr 2020-11-13T08:12:14.487801:++ Authored by: Emperor Zhark
201113-08:12:14,490 nipype.interface INFO:
stderr 2020-11-13T08:12:14.490445:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass/uni.nii.gz
201113-08:12:14,496 nipype.interface INFO:
stderr 2020-11-13T08:12:14.496349:++ Forming automask
201113-08:12:14,498 nipype.interface INFO:
stderr 2020-11-13T08:12:14.498680: + Fixed clip level = 399.969940
201113-08:12:14,502 nipype.interface INFO:
stderr 2020-11-13T08:12:14.502916: + Used gradual clip level = 366.109802 .. 474.327179
201113-08:12:14,503 nipype.interface INFO:
stderr 2020-11-13T08:12:14.503131: + Number voxels above clip level = 31944
201113-08:12:14,503 nipype.interface INFO:
stderr 2020-11-13T08:12:14.503289: + Clustering voxels ...
201113-08:12:14,504 nipype.interface INFO:
stderr 2020-11-13T08:12:14.504414: + Largest cluster has 31943 voxels
201113-08:12:14,505 nipype.interface INFO:
stderr 2020-11-13T08:12:14.505799: + Clustering voxels ...
201113-08:12:14,506 nipype.interface INFO:
stderr 2020-11-13T08:12:14.506912: + Largest cluster has 31624 voxels
201113-08:12:14,510 nipype.interface INFO:
stderr 2020-11-13T08:12:14.510307: + Filled 751 voxels in small holes; now have 32375 voxels
201113-08:12:14,514 nipype.interface INFO:
stderr 2020-11-13T08:12:14.514574: + Filled 7 voxels in large holes; now have 32382 voxels
201113-08:12:14,515 nipype.interface INFO:
stderr 2020-11-13T08:12:14.515842: + Clustering voxels ...
201113-08:12:14,516 nipype.interface INFO:
stderr 2020-11-13T08:12:14.516947: + Largest cluster has 32382 voxels
201113-08:12:14,517 nipype.interface INFO:
stderr 2020-11-13T08:12:14.517181: + Clustering non-brain voxels ...
201113-08:12:14,517 nipype.interface INFO:
stderr 2020-11-13T08:12:14.517323: + Clustering voxels ...
201113-08:12:14,520 nipype.interface INFO:
stderr 2020-11-13T08:12:14.520131: + Largest cluster has 106749 voxels
201113-08:12:14,520 nipype.interface INFO:
stderr 2020-11-13T08:12:14.520459: + Mask now has 32515 voxels
201113-08:12:14,520 nipype.interface INFO:
stderr 2020-11-13T08:12:14.520609:++ Dilating automask
201113-08:12:14,526 nipype.interface INFO:
stderr 2020-11-13T08:12:14.526567: + Clustering voxels ...
201113-08:12:14,528 nipype.interface INFO:
stderr 2020-11-13T08:12:14.528900: + Largest cluster has 100617 voxels
201113-08:12:14,529 nipype.interface INFO:
stderr 2020-11-13T08:12:14.529239:++ 38647 voxels in the mask [out of 139264: 27.75%]
201113-08:12:14,529 nipype.interface INFO:
stderr 2020-11-13T08:12:14.529410:++ first 11 x-planes are zero [from R]
201113-08:12:14,529 nipype.interface INFO:
stderr 2020-11-13T08:12:14.529570:++ last 9 x-planes are zero [from L]
201113-08:12:14,529 nipype.interface INFO:
stderr 2020-11-13T08:12:14.529704:++ first 0 y-planes are zero [from P]
201113-08:12:14,529 nipype.interface INFO:
stderr 2020-11-13T08:12:14.529854:++ last 10 y-planes are zero [from A]
201113-08:12:14,530 nipype.interface INFO:
stderr 2020-11-13T08:12:14.529985:++ first 0 z-planes are zero [from I]
201113-08:12:14,530 nipype.interface INFO:
stderr 2020-11-13T08:12:14.530132:++ last 1 z-planes are zero [from S]
201113-08:12:14,534 nipype.interface INFO:
stderr 2020-11-13T08:12:14.534003:++ Output dataset ./uni_mask.nii.gz
201113-08:12:14,534 nipype.interface INFO:
stderr 2020-11-13T08:12:14.534205:++ applying mask to original data
201113-08:12:14,534 nipype.interface INFO:
stderr 2020-11-13T08:12:14.534892:++ Writing masked data
201113-08:12:14,548 nipype.interface INFO:
stderr 2020-11-13T08:12:14.548347:++ Output dataset ./uni_masked.nii.gz
201113-08:12:14,548 nipype.interface INFO:
stderr 2020-11-13T08:12:14.548671:++ CPU time = 0.000000 sec
201113-08:12:14,728 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-08:12:14,730 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/combine_masks".
201113-08:12:14,736 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_first_pass/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/combine_masks/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:12:15,165 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-08:12:15,166 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201113-08:12:15,172 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-08:12:15,403 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201113-08:12:15,404 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201113-08:12:15,410 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:12:15,656 nipype.interface INFO:
stderr 2020-11-13T08:12:15.656694:++ no -frac option: defaulting to -union
201113-08:12:15,657 nipype.interface INFO:
stderr 2020-11-13T08:12:15.657018:++ processing 1 input dataset(s), NN=2...
201113-08:12:15,657 nipype.interface INFO:
stderr 2020-11-13T08:12:15.657192:++ padding all datasets by 0 (for dilations)
201113-08:12:15,661 nipype.interface INFO:
stderr 2020-11-13T08:12:15.661617:++ frac 0 over 1 volumes gives min count 0
201113-08:12:15,662 nipype.interface INFO:
stderr 2020-11-13T08:12:15.662035:++ voxel limits: 0 clipped, 38571 survived, 100693 were zero
201113-08:12:15,662 nipype.interface INFO:
stderr 2020-11-13T08:12:15.662218:++ writing result sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201113-08:12:15,666 nipype.interface INFO:
stderr 2020-11-13T08:12:15.666435:++ Output dataset ./sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201113-08:12:15,848 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201113-08:12:15,850 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/sinker_0_functional_brain_mask".
201113-08:12:15,857 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:12:16,88 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_brain_mask".
201113-08:12:16,89 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/functional_brain_mask_derivative_0".
201113-08:12:16,94 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201113-08:12:16,305 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201113-08:12:16,312 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:12:16,835 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201113-08:12:16,853 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.functional_brain_mask_derivative_0".
201113-08:12:16,855 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_extract_brain".
201113-08:12:16,862 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_motion_correct_mcflirt/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/combine_masks/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-08:12:17,107 nipype.interface INFO:
stderr 2020-11-13T08:12:17.107741:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:12:17,108 nipype.interface INFO:
stderr 2020-11-13T08:12:17.108068:++ Authored by: A cast of thousands
201113-08:12:18,790 nipype.interface INFO:
stderr 2020-11-13T08:12:18.790393:++ Output dataset ./sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-08:12:18,994 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-08:12:18,995 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_normalize".
201113-08:12:19,0 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/func_extract_brain/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_normalize/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201113-08:12:20,422 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-08:12:20,424 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201113-08:12:20,430 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_normalize/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-08:12:21,109 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201113-08:12:21,111 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201113-08:12:21,117 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-08:12:21,358 nipype.interface INFO:
stderr 2020-11-13T08:12:21.358331:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:12:21,358 nipype.interface INFO:
stderr 2020-11-13T08:12:21.358638:++ Authored by: KR Hammett & RW Cox
201113-08:12:21,674 nipype.interface INFO:
stderr 2020-11-13T08:12:21.674269:++ Output dataset ./sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-08:12:21,856 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.functional_mean".
201113-08:12:21,858 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-071_ses-2/qc_snr_0/_scan_vigilance_run-2/std_dev".
201113-08:12:21,863 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-2/combine_masks/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/qc_snr_0/_scan_vigilance_run-2/std_dev/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-08:12:22,106 nipype.interface INFO:
stderr 2020-11-13T08:12:22.106010:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:12:22,106 nipype.interface INFO:
stderr 2020-11-13T08:12:22.106428:++ Authored by: KR Hammett & RW Cox
201113-08:12:22,395 nipype.interface INFO:
stderr 2020-11-13T08:12:22.395400:++ Output dataset ./sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-08:12:22,576 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.qc_snr_0.std_dev".
201113-08:12:22,578 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/sinker_0_functional_preprocessed".
201113-08:12:22,585 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:12:22,813 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed".
201113-08:12:22,815 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mask_normalize".
201113-08:12:22,820 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_normalize/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mask_normalize/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-08:12:23,594 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-08:12:23,596 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/sinker_0_functional_preprocessed_mask".
201113-08:12:23,603 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:12:23,832 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed_mask".
201113-08:12:23,834 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mean".
201113-08:12:23,839 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/func_mean/sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-08:12:24,91 nipype.interface INFO:
stderr 2020-11-13T08:12:24.091241:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:12:24,91 nipype.interface INFO:
stderr 2020-11-13T08:12:24.091554:++ Authored by: KR Hammett & RW Cox
201113-08:12:24,396 nipype.interface INFO:
stderr 2020-11-13T08:12:24.396385:++ Output dataset ./sub-071_ses-2_task-vigilance_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201113-08:12:24,579 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201113-08:12:24,581 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/sinker_0_mean_functional".
201113-08:12:24,589 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:12:24,819 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_mean_functional".
201113-08:12:24,822 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-2/norm_motion_params".
201113-08:12:24,827 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-08:12:25,54 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-08:12:25,56 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/sinker_0_slice_time_corrected".
201113-08:12:25,62 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:12:25,292 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_slice_time_corrected".
201113-08:12:25,294 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-2/sinker_0_raw_functional".
201113-08:12:25,300 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:12:25,614 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_raw_functional".
201113-08:12:25,616 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_vigilance_run-2/check_func_scan".
201113-08:12:25,647 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201113-08:12:25,877 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.check_func_scan".
201113-08:12:25,888 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_vigilance_run-1/select_scan_params".
201113-08:12:25,917 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-08:12:26,148 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.select_scan_params".
201113-08:12:26,160 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_vigilance_run-1/s3_scan_params".
201113-08:12:26,170 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-08:12:26,406 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.s3_scan_params".
201113-08:12:26,409 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/scan_params_0".
201113-08:12:26,418 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-08:12:26,652 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.scan_params_0".
201113-08:12:26,655 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_vigilance_run-1/selectrest".
201113-08:12:26,688 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-08:12:26,925 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.selectrest".
201113-08:12:26,936 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_vigilance_run-1/check_for_s3".
201113-08:12:26,941 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-08:12:27,225 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.check_for_s3".
201113-08:12:27,227 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-071_ses-2/edit_func_0/_scan_vigilance_run-1/func_get_idx".
201113-08:12:27,233 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-08:12:27,466 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.edit_func_0.func_get_idx".
201113-08:12:27,467 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-071_ses-2/edit_func_0/_scan_vigilance_run-1/func_drop_trs".
201113-08:12:27,474 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-071/ses-2/func/sub-071_ses-2_task-vigilance_run-1_bold.nii.gz[0..68] -expr "a" -prefix sub-071_ses-2_task-vigilance_run-1_bold_calc.nii.gz
201113-08:12:27,723 nipype.interface INFO:
stderr 2020-11-13T08:12:27.723309:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:12:27,723 nipype.interface INFO:
stderr 2020-11-13T08:12:27.723668:++ Authored by: A cast of thousands
201113-08:12:30,740 nipype.interface INFO:
stderr 2020-11-13T08:12:30.740297:++ Output dataset ./sub-071_ses-2_task-vigilance_run-1_bold_calc.nii.gz
201113-08:12:30,949 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.edit_func_0.func_drop_trs".
201113-08:12:30,950 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique".
201113-08:12:30,980 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-071_ses-2_task-vigilance_run-1_bold_calc.nii.gz
201113-08:12:31,230 nipype.interface INFO:
stderr 2020-11-13T08:12:31.230685:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:12:31,231 nipype.interface INFO:
stderr 2020-11-13T08:12:31.231038:++ Authored by: RW Cox
201113-08:12:31,233 nipype.interface INFO:
stderr 2020-11-13T08:12:31.233318:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-071_ses-2_task-vigilance_run-1_bold_calc.nii.gz
201113-08:12:31,233 nipype.interface INFO:
stderr 2020-11-13T08:12:31.233942: + deoblique
201113-08:12:31,234 nipype.interface INFO:
stderr 2020-11-13T08:12:31.234341: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-071_ses-2_task-vigilance_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-071_ses-2_task-vigilance_run-1_bold_calc.nii.gz in NIFTI storage)
201113-08:12:33,242 nipype.interface INFO:
stderr 2020-11-13T08:12:33.242378:++ 3drefit processed 1 datasets
201113-08:12:33,421 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-08:12:33,423 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_reorient".
201113-08:12:33,430 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-2_task-vigilance_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_reorient/sub-071_ses-2_task-vigilance_run-1_bold_calc.nii.gz
201113-08:12:36,1 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-08:12:36,3 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_RPI".
201113-08:12:36,10 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_RPI/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample.nii.gz
201113-08:12:36,256 nipype.interface INFO:
stderr 2020-11-13T08:12:36.256648:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:12:36,256 nipype.interface INFO:
stderr 2020-11-13T08:12:36.256967:++ Authored by: KR Hammett & RW Cox
201113-08:12:36,526 nipype.interface INFO:
stderr 2020-11-13T08:12:36.526493:++ Output dataset ./sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_tstat.nii.gz
201113-08:12:36,708 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-08:12:36,709 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_generate_ref".
201113-08:12:36,716 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-2_task-vigilance_run-1_bold_calc_resample.1D -1Dmatrix_save sub-071_ses-2_task-vigilance_run-1_bold_calc_resample.aff12.1D -prefix sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_RPI/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_generate_ref/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample.nii.gz
201113-08:12:36,957 nipype.interface INFO:
stderr 2020-11-13T08:12:36.957596:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:12:36,957 nipype.interface INFO:
stderr 2020-11-13T08:12:36.957898:++ Authored by: RW Cox
201113-08:12:36,967 nipype.interface INFO:
stderr 2020-11-13T08:12:36.967116:++ Coarse del was 10, replaced with 3
201113-08:13:34,840 nipype.interface INFO:
stderr 2020-11-13T08:13:34.840452:++ Max displacement in automask = 3.63 (mm) at sub-brick 10
201113-08:13:34,841 nipype.interface INFO:
stderr 2020-11-13T08:13:34.841015:++ Max delta displ in automask = 2.84 (mm) at sub-brick 47
201113-08:13:36,889 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-08:13:36,890 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_motion".
201113-08:13:36,896 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_motion/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_volreg.nii.gz
201113-08:13:37,157 nipype.interface INFO:
stderr 2020-11-13T08:13:37.157317:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:13:37,157 nipype.interface INFO:
stderr 2020-11-13T08:13:37.157630:++ Authored by: KR Hammett & RW Cox
201113-08:13:37,426 nipype.interface INFO:
stderr 2020-11-13T08:13:37.426767:++ Output dataset ./sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_volreg_tstat.nii.gz
201113-08:13:37,609 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-08:13:37,610 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_motion_correct_mcflirt".
201113-08:13:37,618 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_reorient/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_motion_correct_mcflirt/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_motion/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-08:13:50,264 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-08:13:50,270 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/calculate_FDJ".
201113-08:13:50,276 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201113-08:13:50,501 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201113-08:13:50,502 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/sinker_0_frame_wise_displacement_jenkinson".
201113-08:13:50,509 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:13:50,738 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201113-08:13:50,739 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/sinker_0_max_displacement".
201113-08:13:50,746 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:13:50,973 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_max_displacement".
201113-08:13:50,974 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/sinker_0_coordinate_transformation".
201113-08:13:50,987 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:13:51,246 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_coordinate_transformation".
201113-08:13:51,253 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_mean_skull".
201113-08:13:51,259 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_mean_skull/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf.nii.gz
201113-08:13:51,510 nipype.interface INFO:
stderr 2020-11-13T08:13:51.510112:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:13:51,510 nipype.interface INFO:
stderr 2020-11-13T08:13:51.510455:++ Authored by: KR Hammett & RW Cox
201113-08:13:51,800 nipype.interface INFO:
stderr 2020-11-13T08:13:51.800436:++ Output dataset ./sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat.nii.gz
201113-08:13:51,979 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-08:13:51,980 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass".
201113-08:13:51,986 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_mean_skull/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-08:13:53,834 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-08:13:53,836 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_dilate".
201113-08:13:53,842 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_dilate/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-08:13:54,528 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-08:13:54,530 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_mask".
201113-08:13:54,536 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_dilate/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_mask/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-08:13:54,977 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-08:13:54,979 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/unifize".
201113-08:13:54,985 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/unifize/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-08:13:55,230 nipype.interface INFO:
stderr 2020-11-13T08:13:55.230382:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:15:13,257 nipype.interface INFO:
stderr 2020-11-13T08:15:13.257234: + Pre-processing: IAV..UW[s4830]Im
201113-08:15:13,272 nipype.interface INFO:
stderr 2020-11-13T08:15:13.272318:++ Output dataset ./uni.nii.gz
201113-08:15:13,272 nipype.interface INFO:
stderr 2020-11-13T08:15:13.272533:++ ===== Elapsed = 78.0 sec
201113-08:15:13,478 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-08:15:13,480 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass".
201113-08:15:13,486 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass/uni.nii.gz
201113-08:15:13,737 nipype.interface INFO:
stderr 2020-11-13T08:15:13.736932:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:15:13,737 nipype.interface INFO:
stderr 2020-11-13T08:15:13.737550:++ Authored by: Emperor Zhark
201113-08:15:13,739 nipype.interface INFO:
stderr 2020-11-13T08:15:13.739722:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass/uni.nii.gz
201113-08:15:13,746 nipype.interface INFO:
stderr 2020-11-13T08:15:13.746073:++ Forming automask
201113-08:15:13,748 nipype.interface INFO:
stderr 2020-11-13T08:15:13.748406: + Fixed clip level = 406.193054
201113-08:15:13,752 nipype.interface INFO:
stderr 2020-11-13T08:15:13.752739: + Used gradual clip level = 370.129242 .. 482.063751
201113-08:15:13,752 nipype.interface INFO:
stderr 2020-11-13T08:15:13.752949: + Number voxels above clip level = 32010
201113-08:15:13,753 nipype.interface INFO:
stderr 2020-11-13T08:15:13.753115: + Clustering voxels ...
201113-08:15:13,754 nipype.interface INFO:
stderr 2020-11-13T08:15:13.754246: + Largest cluster has 32006 voxels
201113-08:15:13,755 nipype.interface INFO:
stderr 2020-11-13T08:15:13.755610: + Clustering voxels ...
201113-08:15:13,756 nipype.interface INFO:
stderr 2020-11-13T08:15:13.756747: + Largest cluster has 31754 voxels
201113-08:15:13,760 nipype.interface INFO:
stderr 2020-11-13T08:15:13.760111: + Filled 612 voxels in small holes; now have 32366 voxels
201113-08:15:13,763 nipype.interface INFO:
stderr 2020-11-13T08:15:13.763341: + Filled 5 voxels in large holes; now have 32371 voxels
201113-08:15:13,764 nipype.interface INFO:
stderr 2020-11-13T08:15:13.764633: + Clustering voxels ...
201113-08:15:13,765 nipype.interface INFO:
stderr 2020-11-13T08:15:13.765759: + Largest cluster has 32369 voxels
201113-08:15:13,766 nipype.interface INFO:
stderr 2020-11-13T08:15:13.765988: + Clustering non-brain voxels ...
201113-08:15:13,766 nipype.interface INFO:
stderr 2020-11-13T08:15:13.766138: + Clustering voxels ...
201113-08:15:13,768 nipype.interface INFO:
stderr 2020-11-13T08:15:13.768953: + Largest cluster has 106791 voxels
201113-08:15:13,769 nipype.interface INFO:
stderr 2020-11-13T08:15:13.769290: + Mask now has 32473 voxels
201113-08:15:13,769 nipype.interface INFO:
stderr 2020-11-13T08:15:13.769443:++ Dilating automask
201113-08:15:13,776 nipype.interface INFO:
stderr 2020-11-13T08:15:13.776583: + Clustering voxels ...
201113-08:15:13,778 nipype.interface INFO:
stderr 2020-11-13T08:15:13.778942: + Largest cluster has 100574 voxels
201113-08:15:13,779 nipype.interface INFO:
stderr 2020-11-13T08:15:13.779283:++ 38690 voxels in the mask [out of 139264: 27.78%]
201113-08:15:13,779 nipype.interface INFO:
stderr 2020-11-13T08:15:13.779455:++ first 11 x-planes are zero [from R]
201113-08:15:13,779 nipype.interface INFO:
stderr 2020-11-13T08:15:13.779615:++ last 9 x-planes are zero [from L]
201113-08:15:13,779 nipype.interface INFO:
stderr 2020-11-13T08:15:13.779748:++ first 0 y-planes are zero [from P]
201113-08:15:13,779 nipype.interface INFO:
stderr 2020-11-13T08:15:13.779895:++ last 9 y-planes are zero [from A]
201113-08:15:13,780 nipype.interface INFO:
stderr 2020-11-13T08:15:13.780040:++ first 1 z-planes are zero [from I]
201113-08:15:13,780 nipype.interface INFO:
stderr 2020-11-13T08:15:13.780174:++ last 0 z-planes are zero [from S]
201113-08:15:13,783 nipype.interface INFO:
stderr 2020-11-13T08:15:13.783857:++ Output dataset ./uni_mask.nii.gz
201113-08:15:13,784 nipype.interface INFO:
stderr 2020-11-13T08:15:13.784032:++ applying mask to original data
201113-08:15:13,784 nipype.interface INFO:
stderr 2020-11-13T08:15:13.784702:++ Writing masked data
201113-08:15:13,798 nipype.interface INFO:
stderr 2020-11-13T08:15:13.798415:++ Output dataset ./uni_masked.nii.gz
201113-08:15:13,798 nipype.interface INFO:
stderr 2020-11-13T08:15:13.798739:++ CPU time = 0.000000 sec
201113-08:15:13,978 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-08:15:13,979 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/combine_masks".
201113-08:15:13,985 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/combine_masks/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:15:14,416 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-08:15:14,417 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/cal_DVARS".
201113-08:15:14,423 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201113-08:15:14,885 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201113-08:15:14,887 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_extract_brain".
201113-08:15:14,894 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_motion_correct_mcflirt/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/combine_masks/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-08:15:15,136 nipype.interface INFO:
stderr 2020-11-13T08:15:15.136856:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:15:15,137 nipype.interface INFO:
stderr 2020-11-13T08:15:15.137171:++ Authored by: A cast of thousands
201113-08:15:16,643 nipype.interface INFO:
stderr 2020-11-13T08:15:16.643835:++ Output dataset ./sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-08:15:16,855 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-08:15:16,857 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_normalize".
201113-08:15:16,862 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_extract_brain/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_normalize/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201113-08:15:18,217 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-08:15:18,218 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mask_normalize".
201113-08:15:18,223 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_normalize/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mask_normalize/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-08:15:18,977 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-08:15:18,978 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mean".
201113-08:15:18,984 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mean/sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-08:15:19,226 nipype.interface INFO:
stderr 2020-11-13T08:15:19.226387:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:15:19,226 nipype.interface INFO:
stderr 2020-11-13T08:15:19.226687:++ Authored by: KR Hammett & RW Cox
201113-08:15:19,400 nipype.interface INFO:
stderr 2020-11-13T08:15:19.400085:++ Output dataset ./sub-071_ses-2_task-vigilance_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201113-08:15:19,584 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201113-08:15:19,586 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/norm_motion_params".
201113-08:15:19,591 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-08:15:19,825 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-08:15:19,826 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/qc_motion_0/_scan_vigilance_run-1/motion_plot".
201113-08:15:19,830 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201113-08:15:20,270 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.qc_motion_0.motion_plot".
201113-08:15:20,271 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/sinker_0_qc___movement_trans_plot".
201113-08:15:20,279 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:15:20,492 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc___movement_trans_plot/_scan_vigilance_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc/movement_trans_plot/_scan_vigilance_run-1/motion_trans_plot.png
201113-08:15:20,509 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_trans_plot".
201113-08:15:20,510 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/sinker_0_qc___movement_rot_plot".
201113-08:15:20,517 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:15:20,731 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc___movement_rot_plot/_scan_vigilance_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc/movement_rot_plot/_scan_vigilance_run-1/motion_rot_plot.png
201113-08:15:20,749 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_rot_plot".
201113-08:15:20,750 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/calc_motion_parameters".
201113-08:15:20,757 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201113-08:15:20,985 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201113-08:15:20,986 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/sinker_0_motion_params".
201113-08:15:20,993 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:15:21,222 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_motion_params".
201113-08:15:21,224 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/calculate_FD".
201113-08:15:21,228 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201113-08:15:21,465 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201113-08:15:21,466 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/sinker_0_frame_wise_displacement_power".
201113-08:15:21,474 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:15:21,705 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_power".
201113-08:15:21,706 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/calc_power_parameters".
201113-08:15:21,710 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201113-08:15:21,944 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201113-08:15:21,946 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/sinker_0_power_params".
201113-08:15:21,952 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:15:22,184 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_power_params".
201113-08:15:22,186 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/sinker_0_movement_parameters".
201113-08:15:22,194 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:15:22,424 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_movement_parameters".
201113-08:15:22,426 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/func_despiked_0".
201113-08:15:22,431 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-071_ses-2_task-vigilance_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/func_despiked_0/sub-071_ses-2_task-vigilance_run-1_bold_calc.nii.gz
201113-08:15:22,683 nipype.interface INFO:
stderr 2020-11-13T08:15:22.683078:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:15:22,683 nipype.interface INFO:
stderr 2020-11-13T08:15:22.683431:++ Authored by: RW Cox
201113-08:15:22,685 nipype.interface INFO:
stderr 2020-11-13T08:15:22.685316:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-08:15:22,685 nipype.interface INFO:
stderr 2020-11-13T08:15:22.685316: such as /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/func_despiked_0/sub-071_ses-2_task-vigilance_run-1_bold_calc.nii.gz,
201113-08:15:22,685 nipype.interface INFO:
stderr 2020-11-13T08:15:22.685316: or viewing/combining it with volumes of differing obliquity,
201113-08:15:22,685 nipype.interface INFO:
stderr 2020-11-13T08:15:22.685316: you should consider running:
201113-08:15:22,685 nipype.interface INFO:
stderr 2020-11-13T08:15:22.685316: 3dWarp -deoblique
201113-08:15:22,685 nipype.interface INFO:
stderr 2020-11-13T08:15:22.685316: on this and other oblique datasets in the same session.
201113-08:15:22,685 nipype.interface INFO:
stderr 2020-11-13T08:15:22.685316: See 3dWarp -help for details.
201113-08:15:22,686 nipype.interface INFO:
stderr 2020-11-13T08:15:22.686373:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/func_despiked_0/sub-071_ses-2_task-vigilance_run-1_bold_calc.nii.gz is 30.880365 degrees from plumb.
201113-08:15:22,686 nipype.interface INFO:
stderr 2020-11-13T08:15:22.686592:++ Input dataset is in short format, but output will be in float format
201113-08:15:22,686 nipype.interface INFO:
stderr 2020-11-13T08:15:22.686761:++ ignoring first 0 time points, using last 69
201113-08:15:22,686 nipype.interface INFO:
stderr 2020-11-13T08:15:22.686928:++ using 69 time points => -corder 2
201113-08:15:22,687 nipype.interface INFO:
stderr 2020-11-13T08:15:22.687100:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/func_despiked_0/sub-071_ses-2_task-vigilance_run-1_bold_calc.nii.gz
201113-08:15:22,941 nipype.interface INFO:
stderr 2020-11-13T08:15:22.941525:++ 36244 voxels in the automask [out of 139264 in dataset]
201113-08:15:22,946 nipype.interface INFO:
stderr 2020-11-13T08:15:22.946903:++ 60475 voxels in the dilated automask [out of 139264 in dataset]
201113-08:15:22,953 nipype.interface INFO:
stderr 2020-11-13T08:15:22.953148:++ Procesing time series with OLD model fit algorithm
201113-08:15:22,953 nipype.interface INFO:
stderr 2020-11-13T08:15:22.953328:++ smash edit thresholds: 3.1 .. 5.0 MADs
201113-08:15:22,953 nipype.interface INFO:
stderr 2020-11-13T08:15:22.953486: + [ 3.457% .. 0.072% of normal distribution]
201113-08:15:22,953 nipype.interface INFO:
stderr 2020-11-13T08:15:22.953634: + [ 8.839% .. 3.125% of Laplace distribution]
201113-08:15:22,953 nipype.interface INFO:
stderr 2020-11-13T08:15:22.953786:++ start OpenMP thread #0
201113-08:15:24,966 nipype.interface INFO:
stderr 2020-11-13T08:15:24.965948:..........................
201113-08:15:24,966 nipype.interface INFO:
stderr 2020-11-13T08:15:24.966413:++ Elapsed despike time = 2s 13ms
201113-08:15:24,966 nipype.interface INFO:
stderr 2020-11-13T08:15:24.966560:
201113-08:15:24,967 nipype.interface INFO:
stderr 2020-11-13T08:15:24.967127:++ FINAL: 4172775 data points, 438549 edits [10.510%], 172293 big edits [4.129%]
201113-08:15:27,146 nipype.interface INFO:
stderr 2020-11-13T08:15:27.146636:++ Output dataset ./sub-071_ses-2_task-vigilance_run-1_bold_calc_despike.nii.gz
201113-08:15:27,361 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_despiked_0".
201113-08:15:27,363 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-1/slice_timing".
201113-08:15:27,370 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-08:15:27,371 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-1/slice_timing/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike.nii.gz
201113-08:15:27,583 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-08:15:27,624 nipype.interface INFO:
stderr 2020-11-13T08:15:27.624664:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:15:27,627 nipype.interface INFO:
stderr 2020-11-13T08:15:27.627872:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-08:15:27,628 nipype.interface INFO:
stderr 2020-11-13T08:15:27.627872: such as /outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-1/slice_timing/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike.nii.gz,
201113-08:15:27,628 nipype.interface INFO:
stderr 2020-11-13T08:15:27.627872: or viewing/combining it with volumes of differing obliquity,
201113-08:15:27,628 nipype.interface INFO:
stderr 2020-11-13T08:15:27.627872: you should consider running:
201113-08:15:27,628 nipype.interface INFO:
stderr 2020-11-13T08:15:27.627872: 3dWarp -deoblique
201113-08:15:27,628 nipype.interface INFO:
stderr 2020-11-13T08:15:27.627872: on this and other oblique datasets in the same session.
201113-08:15:27,628 nipype.interface INFO:
stderr 2020-11-13T08:15:27.627872: See 3dWarp -help for details.
201113-08:15:27,628 nipype.interface INFO:
stderr 2020-11-13T08:15:27.628895:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_vigilance_run-1/slice_timing/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike.nii.gz is 30.880365 degrees from plumb.
201113-08:15:30,508 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_slice_timing_correction_0.slice_timing".
201113-08:15:30,510 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique".
201113-08:15:30,546 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift.nii.gz
201113-08:15:30,796 nipype.interface INFO:
stderr 2020-11-13T08:15:30.796879:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:15:30,797 nipype.interface INFO:
stderr 2020-11-13T08:15:30.797239:++ Authored by: RW Cox
201113-08:15:30,799 nipype.interface INFO:
stderr 2020-11-13T08:15:30.799015:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift.nii.gz
201113-08:15:30,799 nipype.interface INFO:
stderr 2020-11-13T08:15:30.799654: + deoblique
201113-08:15:30,799 nipype.interface INFO:
stderr 2020-11-13T08:15:30.799838: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_deoblique/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201113-08:15:32,14 nipype.interface INFO:
stderr 2020-11-13T08:15:32.014595:++ 3drefit processed 1 datasets
201113-08:15:32,218 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-08:15:32,219 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_reorient".
201113-08:15:32,225 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_reorient/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift.nii.gz
201113-08:15:33,951 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-08:15:33,953 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_RPI".
201113-08:15:33,960 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_RPI/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-08:15:34,229 nipype.interface INFO:
stderr 2020-11-13T08:15:34.229547:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:15:34,230 nipype.interface INFO:
stderr 2020-11-13T08:15:34.229992:++ Authored by: KR Hammett & RW Cox
201113-08:15:34,564 nipype.interface INFO:
stderr 2020-11-13T08:15:34.564385:++ Output dataset ./sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201113-08:15:34,746 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-08:15:34,747 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_generate_ref".
201113-08:15:34,754 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_RPI/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_generate_ref/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-08:15:34,998 nipype.interface INFO:
stderr 2020-11-13T08:15:34.998196:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:15:34,998 nipype.interface INFO:
stderr 2020-11-13T08:15:34.998509:++ Authored by: RW Cox
201113-08:15:35,5 nipype.interface INFO:
stderr 2020-11-13T08:15:35.005496:++ Coarse del was 10, replaced with 3
201113-08:16:32,737 nipype.interface INFO:
stderr 2020-11-13T08:16:32.737632:++ Max displacement in automask = 3.30 (mm) at sub-brick 58
201113-08:16:32,738 nipype.interface INFO:
stderr 2020-11-13T08:16:32.738108:++ Max delta displ in automask = 1.78 (mm) at sub-brick 47
201113-08:16:35,368 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-08:16:35,369 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_motion".
201113-08:16:35,377 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_motion/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201113-08:16:35,631 nipype.interface INFO:
stderr 2020-11-13T08:16:35.631515:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:16:35,631 nipype.interface INFO:
stderr 2020-11-13T08:16:35.631862:++ Authored by: KR Hammett & RW Cox
201113-08:16:36,71 nipype.interface INFO:
stderr 2020-11-13T08:16:36.071871:++ Output dataset ./sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201113-08:16:36,254 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-08:16:36,255 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_motion_correct_mcflirt".
201113-08:16:36,262 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_reorient/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_motion_correct_mcflirt/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_get_mean_motion/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-08:16:47,872 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-08:16:47,878 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/sinker_0_motion_correct".
201113-08:16:47,886 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:16:48,111 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_motion_correct".
201113-08:16:48,113 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_mean_skull".
201113-08:16:48,119 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_mean_skull/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201113-08:16:48,370 nipype.interface INFO:
stderr 2020-11-13T08:16:48.369957:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:16:48,370 nipype.interface INFO:
stderr 2020-11-13T08:16:48.370671:++ Authored by: KR Hammett & RW Cox
201113-08:16:48,722 nipype.interface INFO:
stderr 2020-11-13T08:16:48.722913:++ Output dataset ./sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201113-08:16:48,908 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-08:16:48,909 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass".
201113-08:16:48,915 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_mean_skull/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-08:16:50,742 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-08:16:50,744 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_dilate".
201113-08:16:50,749 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_dilate/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-08:16:51,435 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-08:16:51,437 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_mask".
201113-08:16:51,442 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_dilate/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_mask/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-08:16:51,884 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-08:16:51,886 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/unifize".
201113-08:16:51,891 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/unifize/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-08:16:52,136 nipype.interface INFO:
stderr 2020-11-13T08:16:52.136639:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:18:10,280 nipype.interface INFO:
stderr 2020-11-13T08:18:10.280892: + Pre-processing: IAV..UW[s4824]Im
201113-08:18:10,294 nipype.interface INFO:
stderr 2020-11-13T08:18:10.294642:++ Output dataset ./uni.nii.gz
201113-08:18:10,294 nipype.interface INFO:
stderr 2020-11-13T08:18:10.294917:++ ===== Elapsed = 78.2 sec
201113-08:18:10,503 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-08:18:10,505 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass".
201113-08:18:10,510 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass/uni.nii.gz
201113-08:18:10,778 nipype.interface INFO:
stderr 2020-11-13T08:18:10.778363:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:18:10,778 nipype.interface INFO:
stderr 2020-11-13T08:18:10.778676:++ Authored by: Emperor Zhark
201113-08:18:10,781 nipype.interface INFO:
stderr 2020-11-13T08:18:10.781064:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass/uni.nii.gz
201113-08:18:10,788 nipype.interface INFO:
stderr 2020-11-13T08:18:10.787971:++ Forming automask
201113-08:18:10,790 nipype.interface INFO:
stderr 2020-11-13T08:18:10.790696: + Fixed clip level = 406.719025
201113-08:18:10,794 nipype.interface INFO:
stderr 2020-11-13T08:18:10.794023: + Used gradual clip level = 371.220093 .. 483.503723
201113-08:18:10,794 nipype.interface INFO:
stderr 2020-11-13T08:18:10.794234: + Number voxels above clip level = 32004
201113-08:18:10,794 nipype.interface INFO:
stderr 2020-11-13T08:18:10.794389: + Clustering voxels ...
201113-08:18:10,795 nipype.interface INFO:
stderr 2020-11-13T08:18:10.795538: + Largest cluster has 32000 voxels
201113-08:18:10,796 nipype.interface INFO:
stderr 2020-11-13T08:18:10.796899: + Clustering voxels ...
201113-08:18:10,798 nipype.interface INFO:
stderr 2020-11-13T08:18:10.798051: + Largest cluster has 31740 voxels
201113-08:18:10,801 nipype.interface INFO:
stderr 2020-11-13T08:18:10.801689: + Filled 633 voxels in small holes; now have 32373 voxels
201113-08:18:10,804 nipype.interface INFO:
stderr 2020-11-13T08:18:10.804914: + Filled 7 voxels in large holes; now have 32380 voxels
201113-08:18:10,806 nipype.interface INFO:
stderr 2020-11-13T08:18:10.806196: + Clustering voxels ...
201113-08:18:10,807 nipype.interface INFO:
stderr 2020-11-13T08:18:10.807328: + Largest cluster has 32378 voxels
201113-08:18:10,807 nipype.interface INFO:
stderr 2020-11-13T08:18:10.807554: + Clustering non-brain voxels ...
201113-08:18:10,807 nipype.interface INFO:
stderr 2020-11-13T08:18:10.807693: + Clustering voxels ...
201113-08:18:10,810 nipype.interface INFO:
stderr 2020-11-13T08:18:10.810580: + Largest cluster has 106774 voxels
201113-08:18:10,810 nipype.interface INFO:
stderr 2020-11-13T08:18:10.810906: + Mask now has 32490 voxels
201113-08:18:10,811 nipype.interface INFO:
stderr 2020-11-13T08:18:10.811062:++ Dilating automask
201113-08:18:10,817 nipype.interface INFO:
stderr 2020-11-13T08:18:10.817921: + Clustering voxels ...
201113-08:18:10,820 nipype.interface INFO:
stderr 2020-11-13T08:18:10.820486: + Largest cluster has 100563 voxels
201113-08:18:10,820 nipype.interface INFO:
stderr 2020-11-13T08:18:10.820815:++ 38701 voxels in the mask [out of 139264: 27.79%]
201113-08:18:10,821 nipype.interface INFO:
stderr 2020-11-13T08:18:10.820988:++ first 11 x-planes are zero [from R]
201113-08:18:10,821 nipype.interface INFO:
stderr 2020-11-13T08:18:10.821163:++ last 9 x-planes are zero [from L]
201113-08:18:10,821 nipype.interface INFO:
stderr 2020-11-13T08:18:10.821295:++ first 0 y-planes are zero [from P]
201113-08:18:10,821 nipype.interface INFO:
stderr 2020-11-13T08:18:10.821443:++ last 9 y-planes are zero [from A]
201113-08:18:10,821 nipype.interface INFO:
stderr 2020-11-13T08:18:10.821575:++ first 1 z-planes are zero [from I]
201113-08:18:10,821 nipype.interface INFO:
stderr 2020-11-13T08:18:10.821704:++ last 0 z-planes are zero [from S]
201113-08:18:10,825 nipype.interface INFO:
stderr 2020-11-13T08:18:10.825561:++ Output dataset ./uni_mask.nii.gz
201113-08:18:10,825 nipype.interface INFO:
stderr 2020-11-13T08:18:10.825732:++ applying mask to original data
201113-08:18:10,826 nipype.interface INFO:
stderr 2020-11-13T08:18:10.826403:++ Writing masked data
201113-08:18:10,840 nipype.interface INFO:
stderr 2020-11-13T08:18:10.840425:++ Output dataset ./uni_masked.nii.gz
201113-08:18:10,840 nipype.interface INFO:
stderr 2020-11-13T08:18:10.840749:++ CPU time = 0.000000 sec
201113-08:18:11,22 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-08:18:11,24 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/combine_masks".
201113-08:18:11,30 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_first_pass/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/combine_masks/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:18:11,469 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-08:18:11,472 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201113-08:18:11,478 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-08:18:11,710 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201113-08:18:11,712 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201113-08:18:11,718 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:18:11,965 nipype.interface INFO:
stderr 2020-11-13T08:18:11.965660:++ no -frac option: defaulting to -union
201113-08:18:11,965 nipype.interface INFO:
stderr 2020-11-13T08:18:11.965975:++ processing 1 input dataset(s), NN=2...
201113-08:18:11,966 nipype.interface INFO:
stderr 2020-11-13T08:18:11.966150:++ padding all datasets by 0 (for dilations)
201113-08:18:11,971 nipype.interface INFO:
stderr 2020-11-13T08:18:11.971206:++ frac 0 over 1 volumes gives min count 0
201113-08:18:11,971 nipype.interface INFO:
stderr 2020-11-13T08:18:11.971614:++ voxel limits: 0 clipped, 38647 survived, 100617 were zero
201113-08:18:11,971 nipype.interface INFO:
stderr 2020-11-13T08:18:11.971790:++ writing result sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201113-08:18:11,975 nipype.interface INFO:
stderr 2020-11-13T08:18:11.975860:++ Output dataset ./sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201113-08:18:12,159 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201113-08:18:12,160 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/sinker_0_functional_brain_mask".
201113-08:18:12,168 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:18:12,399 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_brain_mask".
201113-08:18:12,401 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/functional_brain_mask_derivative_0".
201113-08:18:12,406 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201113-08:18:12,615 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201113-08:18:12,621 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:18:13,130 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201113-08:18:13,145 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.functional_brain_mask_derivative_0".
201113-08:18:13,146 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_extract_brain".
201113-08:18:13,152 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_motion_correct_mcflirt/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/combine_masks/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-08:18:13,397 nipype.interface INFO:
stderr 2020-11-13T08:18:13.397120:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:18:13,397 nipype.interface INFO:
stderr 2020-11-13T08:18:13.397440:++ Authored by: A cast of thousands
201113-08:18:15,63 nipype.interface INFO:
stderr 2020-11-13T08:18:15.063538:++ Output dataset ./sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-08:18:15,244 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-08:18:15,245 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_normalize".
201113-08:18:15,250 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/func_extract_brain/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_normalize/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201113-08:18:16,710 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-08:18:16,712 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201113-08:18:16,717 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_normalize/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-08:18:17,395 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201113-08:18:17,397 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201113-08:18:17,403 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_vigilance_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-08:18:17,647 nipype.interface INFO:
stderr 2020-11-13T08:18:17.647696:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:18:17,648 nipype.interface INFO:
stderr 2020-11-13T08:18:17.648005:++ Authored by: KR Hammett & RW Cox
201113-08:18:17,961 nipype.interface INFO:
stderr 2020-11-13T08:18:17.961343:++ Output dataset ./sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-08:18:18,145 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.functional_mean".
201113-08:18:18,147 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-071_ses-2/qc_snr_0/_scan_vigilance_run-1/std_dev".
201113-08:18:18,153 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_vigilance_run-1/combine_masks/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/qc_snr_0/_scan_vigilance_run-1/std_dev/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-08:18:18,398 nipype.interface INFO:
stderr 2020-11-13T08:18:18.398756:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:18:18,399 nipype.interface INFO:
stderr 2020-11-13T08:18:18.399089:++ Authored by: KR Hammett & RW Cox
201113-08:18:18,687 nipype.interface INFO:
stderr 2020-11-13T08:18:18.687439:++ Output dataset ./sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-08:18:18,873 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.qc_snr_0.std_dev".
201113-08:18:18,875 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/sinker_0_functional_preprocessed".
201113-08:18:18,882 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:18:19,109 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed".
201113-08:18:19,110 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mask_normalize".
201113-08:18:19,116 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_normalize/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mask_normalize/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-08:18:19,884 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-08:18:19,885 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/sinker_0_functional_preprocessed_mask".
201113-08:18:19,892 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:18:20,121 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed_mask".
201113-08:18:20,123 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mean".
201113-08:18:20,129 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/func_mean/sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-08:18:20,377 nipype.interface INFO:
stderr 2020-11-13T08:18:20.377092:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:18:20,377 nipype.interface INFO:
stderr 2020-11-13T08:18:20.377416:++ Authored by: KR Hammett & RW Cox
201113-08:18:20,680 nipype.interface INFO:
stderr 2020-11-13T08:18:20.680432:++ Output dataset ./sub-071_ses-2_task-vigilance_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201113-08:18:20,864 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201113-08:18:20,866 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/sinker_0_mean_functional".
201113-08:18:20,873 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:18:21,100 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_mean_functional".
201113-08:18:21,101 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_vigilance_run-1/norm_motion_params".
201113-08:18:21,106 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-08:18:21,340 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-08:18:21,341 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/sinker_0_slice_time_corrected".
201113-08:18:21,349 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:18:21,580 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_slice_time_corrected".
201113-08:18:21,582 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_vigilance_run-1/sinker_0_raw_functional".
201113-08:18:21,589 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:18:21,898 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_raw_functional".
201113-08:18:21,900 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_vigilance_run-1/check_func_scan".
201113-08:18:21,934 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201113-08:18:22,166 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.check_func_scan".
201113-08:18:22,177 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_tgng_run-2/select_scan_params".
201113-08:18:22,206 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-08:18:22,437 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.select_scan_params".
201113-08:18:22,447 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_tgng_run-2/s3_scan_params".
201113-08:18:22,455 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-08:18:22,685 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.s3_scan_params".
201113-08:18:22,688 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/scan_params_0".
201113-08:18:22,697 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-08:18:22,923 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.scan_params_0".
201113-08:18:22,926 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_tgng_run-2/selectrest".
201113-08:18:22,956 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-08:18:23,186 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.selectrest".
201113-08:18:23,196 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_tgng_run-2/check_for_s3".
201113-08:18:23,201 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-08:18:23,480 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.check_for_s3".
201113-08:18:23,481 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-071_ses-2/edit_func_0/_scan_tgng_run-2/func_get_idx".
201113-08:18:23,487 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-08:18:23,714 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.edit_func_0.func_get_idx".
201113-08:18:23,715 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-071_ses-2/edit_func_0/_scan_tgng_run-2/func_drop_trs".
201113-08:18:23,721 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-071/ses-2/func/sub-071_ses-2_task-tgng_run-2_bold.nii.gz[0..129] -expr "a" -prefix sub-071_ses-2_task-tgng_run-2_bold_calc.nii.gz
201113-08:18:23,974 nipype.interface INFO:
stderr 2020-11-13T08:18:23.974606:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:18:23,974 nipype.interface INFO:
stderr 2020-11-13T08:18:23.974972:++ Authored by: A cast of thousands
201113-08:18:29,613 nipype.interface INFO:
stderr 2020-11-13T08:18:29.613716:++ Output dataset ./sub-071_ses-2_task-tgng_run-2_bold_calc.nii.gz
201113-08:18:29,798 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.edit_func_0.func_drop_trs".
201113-08:18:29,799 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique".
201113-08:18:29,845 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-071_ses-2_task-tgng_run-2_bold_calc.nii.gz
201113-08:18:30,98 nipype.interface INFO:
stderr 2020-11-13T08:18:30.098217:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:18:30,98 nipype.interface INFO:
stderr 2020-11-13T08:18:30.098571:++ Authored by: RW Cox
201113-08:18:30,108 nipype.interface INFO:
stderr 2020-11-13T08:18:30.108731:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-071_ses-2_task-tgng_run-2_bold_calc.nii.gz
201113-08:18:30,109 nipype.interface INFO:
stderr 2020-11-13T08:18:30.109601: + deoblique
201113-08:18:30,109 nipype.interface INFO:
stderr 2020-11-13T08:18:30.109871: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-071_ses-2_task-tgng_run-2_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-071_ses-2_task-tgng_run-2_bold_calc.nii.gz in NIFTI storage)
201113-08:18:33,915 nipype.interface INFO:
stderr 2020-11-13T08:18:33.915287:++ 3drefit processed 1 datasets
201113-08:18:34,126 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-08:18:34,127 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient".
201113-08:18:34,133 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-2_task-tgng_run-2_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-071_ses-2_task-tgng_run-2_bold_calc.nii.gz
201113-08:18:38,483 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-08:18:38,485 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI".
201113-08:18:38,491 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-tgng_run-2_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-071_ses-2_task-tgng_run-2_bold_calc_resample.nii.gz
201113-08:18:38,736 nipype.interface INFO:
stderr 2020-11-13T08:18:38.736656:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:18:38,736 nipype.interface INFO:
stderr 2020-11-13T08:18:38.736967:++ Authored by: KR Hammett & RW Cox
201113-08:18:39,205 nipype.interface INFO:
stderr 2020-11-13T08:18:39.204998:++ Output dataset ./sub-071_ses-2_task-tgng_run-2_bold_calc_resample_tstat.nii.gz
201113-08:18:39,400 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-08:18:39,401 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref".
201113-08:18:39,408 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-2_task-tgng_run-2_bold_calc_resample.1D -1Dmatrix_save sub-071_ses-2_task-tgng_run-2_bold_calc_resample.aff12.1D -prefix sub-071_ses-2_task-tgng_run-2_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-071_ses-2_task-tgng_run-2_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-2_task-tgng_run-2_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref/sub-071_ses-2_task-tgng_run-2_bold_calc_resample.nii.gz
201113-08:18:39,657 nipype.interface INFO:
stderr 2020-11-13T08:18:39.656973:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:18:39,657 nipype.interface INFO:
stderr 2020-11-13T08:18:39.657296:++ Authored by: RW Cox
201113-08:18:39,667 nipype.interface INFO:
stderr 2020-11-13T08:18:39.666984:++ Coarse del was 10, replaced with 3
201113-08:20:26,541 nipype.interface INFO:
stderr 2020-11-13T08:20:26.541725:++ Max displacement in automask = 0.76 (mm) at sub-brick 72
201113-08:20:26,542 nipype.interface INFO:
stderr 2020-11-13T08:20:26.542196:++ Max delta displ in automask = 0.72 (mm) at sub-brick 72
201113-08:20:30,214 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-08:20:30,216 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion".
201113-08:20:30,223 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-tgng_run-2_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-071_ses-2_task-tgng_run-2_bold_calc_resample_volreg.nii.gz
201113-08:20:30,478 nipype.interface INFO:
stderr 2020-11-13T08:20:30.478257:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:20:30,478 nipype.interface INFO:
stderr 2020-11-13T08:20:30.478592:++ Authored by: KR Hammett & RW Cox
201113-08:20:30,950 nipype.interface INFO:
stderr 2020-11-13T08:20:30.950301:++ Output dataset ./sub-071_ses-2_task-tgng_run-2_bold_calc_resample_volreg_tstat.nii.gz
201113-08:20:31,135 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-08:20:31,136 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt".
201113-08:20:31,142 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-071_ses-2_task-tgng_run-2_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-071_ses-2_task-tgng_run-2_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-08:20:54,584 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-08:20:54,593 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calculate_FDJ".
201113-08:20:54,601 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201113-08:20:54,829 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201113-08:20:54,830 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/sinker_0_frame_wise_displacement_jenkinson".
201113-08:20:54,838 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:20:55,69 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201113-08:20:55,70 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/sinker_0_max_displacement".
201113-08:20:55,79 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:20:55,310 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_max_displacement".
201113-08:20:55,312 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/sinker_0_coordinate_transformation".
201113-08:20:55,330 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:20:55,596 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_coordinate_transformation".
201113-08:20:55,606 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull".
201113-08:20:55,615 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf.nii.gz
201113-08:20:55,868 nipype.interface INFO:
stderr 2020-11-13T08:20:55.868766:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:20:55,869 nipype.interface INFO:
stderr 2020-11-13T08:20:55.869128:++ Authored by: KR Hammett & RW Cox
201113-08:20:56,387 nipype.interface INFO:
stderr 2020-11-13T08:20:56.387665:++ Output dataset ./sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat.nii.gz
201113-08:20:56,582 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-08:20:56,584 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass".
201113-08:20:56,590 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-08:20:58,414 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-08:20:58,415 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate".
201113-08:20:58,422 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-08:20:59,117 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-08:20:59,118 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask".
201113-08:20:59,124 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask/sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-08:20:59,576 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-08:20:59,577 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize".
201113-08:20:59,583 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize/sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-08:20:59,828 nipype.interface INFO:
stderr 2020-11-13T08:20:59.828687:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:22:17,429 nipype.interface INFO:
stderr 2020-11-13T08:22:17.429049: + Pre-processing: IAV..UW[s4353]Im
201113-08:22:17,443 nipype.interface INFO:
stderr 2020-11-13T08:22:17.443021:++ Output dataset ./uni.nii.gz
201113-08:22:17,443 nipype.interface INFO:
stderr 2020-11-13T08:22:17.443308:++ ===== Elapsed = 77.6 sec
201113-08:22:17,653 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-08:22:17,655 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass".
201113-08:22:17,661 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201113-08:22:17,906 nipype.interface INFO:
stderr 2020-11-13T08:22:17.906750:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:22:17,907 nipype.interface INFO:
stderr 2020-11-13T08:22:17.907174:++ Authored by: Emperor Zhark
201113-08:22:17,909 nipype.interface INFO:
stderr 2020-11-13T08:22:17.909166:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201113-08:22:17,913 nipype.interface INFO:
stderr 2020-11-13T08:22:17.913468:++ Forming automask
201113-08:22:17,915 nipype.interface INFO:
stderr 2020-11-13T08:22:17.915209: + Fixed clip level = 407.644653
201113-08:22:17,919 nipype.interface INFO:
stderr 2020-11-13T08:22:17.919679: + Used gradual clip level = 358.818848 .. 484.799011
201113-08:22:17,919 nipype.interface INFO:
stderr 2020-11-13T08:22:17.919931: + Number voxels above clip level = 31921
201113-08:22:17,920 nipype.interface INFO:
stderr 2020-11-13T08:22:17.920341: + Clustering voxels ...
201113-08:22:17,921 nipype.interface INFO:
stderr 2020-11-13T08:22:17.921554: + Largest cluster has 31918 voxels
201113-08:22:17,922 nipype.interface INFO:
stderr 2020-11-13T08:22:17.922949: + Clustering voxels ...
201113-08:22:17,924 nipype.interface INFO:
stderr 2020-11-13T08:22:17.924348: + Largest cluster has 31524 voxels
201113-08:22:17,927 nipype.interface INFO:
stderr 2020-11-13T08:22:17.927956: + Filled 884 voxels in small holes; now have 32408 voxels
201113-08:22:17,930 nipype.interface INFO:
stderr 2020-11-13T08:22:17.930176: + Filled 6 voxels in large holes; now have 32414 voxels
201113-08:22:17,931 nipype.interface INFO:
stderr 2020-11-13T08:22:17.931451: + Clustering voxels ...
201113-08:22:17,932 nipype.interface INFO:
stderr 2020-11-13T08:22:17.932572: + Largest cluster has 32411 voxels
201113-08:22:17,932 nipype.interface INFO:
stderr 2020-11-13T08:22:17.932796: + Clustering non-brain voxels ...
201113-08:22:17,932 nipype.interface INFO:
stderr 2020-11-13T08:22:17.932935: + Clustering voxels ...
201113-08:22:17,935 nipype.interface INFO:
stderr 2020-11-13T08:22:17.935763: + Largest cluster has 106719 voxels
201113-08:22:17,936 nipype.interface INFO:
stderr 2020-11-13T08:22:17.936092: + Mask now has 32545 voxels
201113-08:22:17,936 nipype.interface INFO:
stderr 2020-11-13T08:22:17.936240:++ Dilating automask
201113-08:22:17,944 nipype.interface INFO:
stderr 2020-11-13T08:22:17.944663: + Clustering voxels ...
201113-08:22:17,947 nipype.interface INFO:
stderr 2020-11-13T08:22:17.947261: + Largest cluster has 100594 voxels
201113-08:22:17,947 nipype.interface INFO:
stderr 2020-11-13T08:22:17.947593:++ 38670 voxels in the mask [out of 139264: 27.77%]
201113-08:22:17,947 nipype.interface INFO:
stderr 2020-11-13T08:22:17.947765:++ first 10 x-planes are zero [from R]
201113-08:22:17,947 nipype.interface INFO:
stderr 2020-11-13T08:22:17.947929:++ last 10 x-planes are zero [from L]
201113-08:22:17,948 nipype.interface INFO:
stderr 2020-11-13T08:22:17.948071:++ first 1 y-planes are zero [from P]
201113-08:22:17,948 nipype.interface INFO:
stderr 2020-11-13T08:22:17.948216:++ last 7 y-planes are zero [from A]
201113-08:22:17,948 nipype.interface INFO:
stderr 2020-11-13T08:22:17.948352:++ first 2 z-planes are zero [from I]
201113-08:22:17,948 nipype.interface INFO:
stderr 2020-11-13T08:22:17.948481:++ last 0 z-planes are zero [from S]
201113-08:22:17,952 nipype.interface INFO:
stderr 2020-11-13T08:22:17.952385:++ Output dataset ./uni_mask.nii.gz
201113-08:22:17,952 nipype.interface INFO:
stderr 2020-11-13T08:22:17.952556:++ applying mask to original data
201113-08:22:17,953 nipype.interface INFO:
stderr 2020-11-13T08:22:17.953229:++ Writing masked data
201113-08:22:17,967 nipype.interface INFO:
stderr 2020-11-13T08:22:17.967863:++ Output dataset ./uni_masked.nii.gz
201113-08:22:17,968 nipype.interface INFO:
stderr 2020-11-13T08:22:17.968218:++ CPU time = 0.000000 sec
201113-08:22:18,148 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-08:22:18,150 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks".
201113-08:22:18,156 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:22:18,585 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-08:22:18,586 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/cal_DVARS".
201113-08:22:18,592 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201113-08:22:19,290 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201113-08:22:19,291 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain".
201113-08:22:19,299 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-08:22:19,545 nipype.interface INFO:
stderr 2020-11-13T08:22:19.545610:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:22:19,545 nipype.interface INFO:
stderr 2020-11-13T08:22:19.545937:++ Authored by: A cast of thousands
201113-08:22:22,350 nipype.interface INFO:
stderr 2020-11-13T08:22:22.350241:++ Output dataset ./sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-08:22:22,536 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-08:22:22,537 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize".
201113-08:22:22,544 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain/sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201113-08:22:24,777 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-08:22:24,778 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize".
201113-08:22:24,784 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize/sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-08:22:25,844 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-08:22:25,846 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean".
201113-08:22:25,851 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-08:22:26,110 nipype.interface INFO:
stderr 2020-11-13T08:22:26.110768:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:22:26,111 nipype.interface INFO:
stderr 2020-11-13T08:22:26.111153:++ Authored by: KR Hammett & RW Cox
201113-08:22:26,416 nipype.interface INFO:
stderr 2020-11-13T08:22:26.416412:++ Output dataset ./sub-071_ses-2_task-tgng_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz
201113-08:22:26,605 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201113-08:22:26,606 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/norm_motion_params".
201113-08:22:26,611 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-08:22:26,842 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-08:22:26,843 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/qc_motion_0/_scan_tgng_run-2/motion_plot".
201113-08:22:26,847 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201113-08:22:27,289 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.qc_motion_0.motion_plot".
201113-08:22:27,290 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/sinker_0_qc___movement_trans_plot".
201113-08:22:27,298 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:22:27,511 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc___movement_trans_plot/_scan_tgng_run-2/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc/movement_trans_plot/_scan_tgng_run-2/motion_trans_plot.png
201113-08:22:27,528 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_trans_plot".
201113-08:22:27,529 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/sinker_0_qc___movement_rot_plot".
201113-08:22:27,536 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:22:27,749 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc___movement_rot_plot/_scan_tgng_run-2/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc/movement_rot_plot/_scan_tgng_run-2/motion_rot_plot.png
201113-08:22:27,768 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_rot_plot".
201113-08:22:27,769 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calc_motion_parameters".
201113-08:22:27,776 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201113-08:22:28,11 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201113-08:22:28,13 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/sinker_0_motion_params".
201113-08:22:28,20 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:22:28,251 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_motion_params".
201113-08:22:28,253 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calculate_FD".
201113-08:22:28,257 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201113-08:22:28,486 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201113-08:22:28,487 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/sinker_0_frame_wise_displacement_power".
201113-08:22:28,495 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:22:28,723 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_power".
201113-08:22:28,725 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/calc_power_parameters".
201113-08:22:28,730 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201113-08:22:28,963 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201113-08:22:28,964 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/sinker_0_power_params".
201113-08:22:28,971 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:22:29,204 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_power_params".
201113-08:22:29,206 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/sinker_0_movement_parameters".
201113-08:22:29,213 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:22:29,444 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_movement_parameters".
201113-08:22:29,446 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/func_despiked_0".
201113-08:22:29,451 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-071_ses-2_task-tgng_run-2_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/func_despiked_0/sub-071_ses-2_task-tgng_run-2_bold_calc.nii.gz
201113-08:22:29,711 nipype.interface INFO:
stderr 2020-11-13T08:22:29.711547:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:22:29,711 nipype.interface INFO:
stderr 2020-11-13T08:22:29.711909:++ Authored by: RW Cox
201113-08:22:29,715 nipype.interface INFO:
stderr 2020-11-13T08:22:29.715635:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-08:22:29,715 nipype.interface INFO:
stderr 2020-11-13T08:22:29.715635: such as /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/func_despiked_0/sub-071_ses-2_task-tgng_run-2_bold_calc.nii.gz,
201113-08:22:29,716 nipype.interface INFO:
stderr 2020-11-13T08:22:29.715635: or viewing/combining it with volumes of differing obliquity,
201113-08:22:29,716 nipype.interface INFO:
stderr 2020-11-13T08:22:29.715635: you should consider running:
201113-08:22:29,716 nipype.interface INFO:
stderr 2020-11-13T08:22:29.715635: 3dWarp -deoblique
201113-08:22:29,716 nipype.interface INFO:
stderr 2020-11-13T08:22:29.715635: on this and other oblique datasets in the same session.
201113-08:22:29,716 nipype.interface INFO:
stderr 2020-11-13T08:22:29.715635: See 3dWarp -help for details.
201113-08:22:29,716 nipype.interface INFO:
stderr 2020-11-13T08:22:29.716815:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/func_despiked_0/sub-071_ses-2_task-tgng_run-2_bold_calc.nii.gz is 30.880365 degrees from plumb.
201113-08:22:29,717 nipype.interface INFO:
stderr 2020-11-13T08:22:29.717083:++ Input dataset is in short format, but output will be in float format
201113-08:22:29,717 nipype.interface INFO:
stderr 2020-11-13T08:22:29.717318:++ ignoring first 0 time points, using last 130
201113-08:22:29,717 nipype.interface INFO:
stderr 2020-11-13T08:22:29.717549:++ using 130 time points => -corder 4
201113-08:22:29,717 nipype.interface INFO:
stderr 2020-11-13T08:22:29.717773:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/func_despiked_0/sub-071_ses-2_task-tgng_run-2_bold_calc.nii.gz
201113-08:22:30,191 nipype.interface INFO:
stderr 2020-11-13T08:22:30.191032:++ 36220 voxels in the automask [out of 139264 in dataset]
201113-08:22:30,196 nipype.interface INFO:
stderr 2020-11-13T08:22:30.196478:++ 60621 voxels in the dilated automask [out of 139264 in dataset]
201113-08:22:30,207 nipype.interface INFO:
stderr 2020-11-13T08:22:30.207351:++ Procesing time series with OLD model fit algorithm
201113-08:22:30,207 nipype.interface INFO:
stderr 2020-11-13T08:22:30.207530:++ smash edit thresholds: 3.1 .. 5.0 MADs
201113-08:22:30,207 nipype.interface INFO:
stderr 2020-11-13T08:22:30.207686: + [ 3.457% .. 0.072% of normal distribution]
201113-08:22:30,207 nipype.interface INFO:
stderr 2020-11-13T08:22:30.207834: + [ 8.839% .. 3.125% of Laplace distribution]
201113-08:22:30,208 nipype.interface INFO:
stderr 2020-11-13T08:22:30.207987:++ start OpenMP thread #0
201113-08:22:35,965 nipype.interface INFO:
stderr 2020-11-13T08:22:35.965456:...........................
201113-08:22:35,965 nipype.interface INFO:
stderr 2020-11-13T08:22:35.965927:++ Elapsed despike time = 5s 758ms
201113-08:22:35,966 nipype.interface INFO:
stderr 2020-11-13T08:22:35.966084:
201113-08:22:35,966 nipype.interface INFO:
stderr 2020-11-13T08:22:35.966899:++ FINAL: 7880730 data points, 506745 edits [6.430%], 56842 big edits [0.721%]
201113-08:22:40,192 nipype.interface INFO:
stderr 2020-11-13T08:22:40.192876:++ Output dataset ./sub-071_ses-2_task-tgng_run-2_bold_calc_despike.nii.gz
201113-08:22:40,416 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_despiked_0".
201113-08:22:40,418 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing".
201113-08:22:40,426 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-08:22:40,427 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing/sub-071_ses-2_task-tgng_run-2_bold_calc_despike.nii.gz
201113-08:22:40,641 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-08:22:40,674 nipype.interface INFO:
stderr 2020-11-13T08:22:40.674358:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:22:40,676 nipype.interface INFO:
stderr 2020-11-13T08:22:40.676956:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-08:22:40,677 nipype.interface INFO:
stderr 2020-11-13T08:22:40.676956: such as /outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing/sub-071_ses-2_task-tgng_run-2_bold_calc_despike.nii.gz,
201113-08:22:40,677 nipype.interface INFO:
stderr 2020-11-13T08:22:40.676956: or viewing/combining it with volumes of differing obliquity,
201113-08:22:40,677 nipype.interface INFO:
stderr 2020-11-13T08:22:40.676956: you should consider running:
201113-08:22:40,677 nipype.interface INFO:
stderr 2020-11-13T08:22:40.676956: 3dWarp -deoblique
201113-08:22:40,677 nipype.interface INFO:
stderr 2020-11-13T08:22:40.676956: on this and other oblique datasets in the same session.
201113-08:22:40,677 nipype.interface INFO:
stderr 2020-11-13T08:22:40.676956: See 3dWarp -help for details.
201113-08:22:40,677 nipype.interface INFO:
stderr 2020-11-13T08:22:40.677671:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_tgng_run-2/slice_timing/sub-071_ses-2_task-tgng_run-2_bold_calc_despike.nii.gz is 30.880365 degrees from plumb.
201113-08:22:45,104 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_slice_timing_correction_0.slice_timing".
201113-08:22:45,105 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique".
201113-08:22:45,165 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift.nii.gz
201113-08:22:45,412 nipype.interface INFO:
stderr 2020-11-13T08:22:45.412751:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:22:45,413 nipype.interface INFO:
stderr 2020-11-13T08:22:45.413119:++ Authored by: RW Cox
201113-08:22:45,415 nipype.interface INFO:
stderr 2020-11-13T08:22:45.415153:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift.nii.gz
201113-08:22:45,415 nipype.interface INFO:
stderr 2020-11-13T08:22:45.415767: + deoblique
201113-08:22:45,415 nipype.interface INFO:
stderr 2020-11-13T08:22:45.415953: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_deoblique/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201113-08:22:47,617 nipype.interface INFO:
stderr 2020-11-13T08:22:47.617430:++ 3drefit processed 1 datasets
201113-08:22:47,826 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-08:22:47,827 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient".
201113-08:22:47,833 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift.nii.gz
201113-08:22:50,651 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-08:22:50,653 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI".
201113-08:22:50,660 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz
201113-08:22:50,906 nipype.interface INFO:
stderr 2020-11-13T08:22:50.906092:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:22:50,906 nipype.interface INFO:
stderr 2020-11-13T08:22:50.906398:++ Authored by: KR Hammett & RW Cox
201113-08:22:51,511 nipype.interface INFO:
stderr 2020-11-13T08:22:51.511278:++ Output dataset ./sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz
201113-08:22:51,695 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-08:22:51,696 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref".
201113-08:22:51,704 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_RPI/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_generate_ref/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz
201113-08:22:51,948 nipype.interface INFO:
stderr 2020-11-13T08:22:51.948217:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:22:51,948 nipype.interface INFO:
stderr 2020-11-13T08:22:51.948632:++ Authored by: RW Cox
201113-08:22:51,955 nipype.interface INFO:
stderr 2020-11-13T08:22:51.955812:++ Coarse del was 10, replaced with 3
201113-08:24:39,161 nipype.interface INFO:
stderr 2020-11-13T08:24:39.161692:++ Max displacement in automask = 0.74 (mm) at sub-brick 9
201113-08:24:39,162 nipype.interface INFO:
stderr 2020-11-13T08:24:39.162161:++ Max delta displ in automask = 0.52 (mm) at sub-brick 72
201113-08:24:43,979 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-08:24:43,981 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion".
201113-08:24:43,988 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz
201113-08:24:44,246 nipype.interface INFO:
stderr 2020-11-13T08:24:44.246731:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:24:44,247 nipype.interface INFO:
stderr 2020-11-13T08:24:44.247271:++ Authored by: KR Hammett & RW Cox
201113-08:24:45,42 nipype.interface INFO:
stderr 2020-11-13T08:24:45.042860:++ Output dataset ./sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201113-08:24:45,232 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-08:24:45,234 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt".
201113-08:24:45,241 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_reorient/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_get_mean_motion/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-08:25:06,325 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-08:25:06,334 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/sinker_0_motion_correct".
201113-08:25:06,343 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:25:06,570 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_motion_correct".
201113-08:25:06,572 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull".
201113-08:25:06,579 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz
201113-08:25:06,829 nipype.interface INFO:
stderr 2020-11-13T08:25:06.829613:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:25:06,829 nipype.interface INFO:
stderr 2020-11-13T08:25:06.829954:++ Authored by: KR Hammett & RW Cox
201113-08:25:07,462 nipype.interface INFO:
stderr 2020-11-13T08:25:07.462789:++ Output dataset ./sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201113-08:25:07,649 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-08:25:07,650 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass".
201113-08:25:07,657 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_mean_skull/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-08:25:09,509 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-08:25:09,511 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate".
201113-08:25:09,517 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-08:25:10,198 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-08:25:10,199 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask".
201113-08:25:10,205 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_dilate/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_mask/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-08:25:10,651 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-08:25:10,653 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize".
201113-08:25:10,658 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/unifize/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-08:25:10,903 nipype.interface INFO:
stderr 2020-11-13T08:25:10.903883:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:26:28,709 nipype.interface INFO:
stderr 2020-11-13T08:26:28.709209: + Pre-processing: IAV..UW[s4367]Im
201113-08:26:28,726 nipype.interface INFO:
stderr 2020-11-13T08:26:28.726344:++ Output dataset ./uni.nii.gz
201113-08:26:28,726 nipype.interface INFO:
stderr 2020-11-13T08:26:28.726661:++ ===== Elapsed = 77.8 sec
201113-08:26:28,942 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-08:26:28,944 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass".
201113-08:26:28,949 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201113-08:26:29,212 nipype.interface INFO:
stderr 2020-11-13T08:26:29.212099:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:26:29,212 nipype.interface INFO:
stderr 2020-11-13T08:26:29.212419:++ Authored by: Emperor Zhark
201113-08:26:29,214 nipype.interface INFO:
stderr 2020-11-13T08:26:29.214196:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni.nii.gz
201113-08:26:29,217 nipype.interface INFO:
stderr 2020-11-13T08:26:29.217515:++ Forming automask
201113-08:26:29,218 nipype.interface INFO:
stderr 2020-11-13T08:26:29.218883: + Fixed clip level = 407.808655
201113-08:26:29,223 nipype.interface INFO:
stderr 2020-11-13T08:26:29.223020: + Used gradual clip level = 358.578857 .. 484.871307
201113-08:26:29,223 nipype.interface INFO:
stderr 2020-11-13T08:26:29.223278: + Number voxels above clip level = 31936
201113-08:26:29,223 nipype.interface INFO:
stderr 2020-11-13T08:26:29.223464: + Clustering voxels ...
201113-08:26:29,225 nipype.interface INFO:
stderr 2020-11-13T08:26:29.225170: + Largest cluster has 31933 voxels
201113-08:26:29,227 nipype.interface INFO:
stderr 2020-11-13T08:26:29.226996: + Clustering voxels ...
201113-08:26:29,228 nipype.interface INFO:
stderr 2020-11-13T08:26:29.228503: + Largest cluster has 31541 voxels
201113-08:26:29,232 nipype.interface INFO:
stderr 2020-11-13T08:26:29.232499: + Filled 882 voxels in small holes; now have 32423 voxels
201113-08:26:29,234 nipype.interface INFO:
stderr 2020-11-13T08:26:29.234705: + Filled 6 voxels in large holes; now have 32429 voxels
201113-08:26:29,235 nipype.interface INFO:
stderr 2020-11-13T08:26:29.235978: + Clustering voxels ...
201113-08:26:29,237 nipype.interface INFO:
stderr 2020-11-13T08:26:29.237105: + Largest cluster has 32426 voxels
201113-08:26:29,237 nipype.interface INFO:
stderr 2020-11-13T08:26:29.237331: + Clustering non-brain voxels ...
201113-08:26:29,237 nipype.interface INFO:
stderr 2020-11-13T08:26:29.237470: + Clustering voxels ...
201113-08:26:29,240 nipype.interface INFO:
stderr 2020-11-13T08:26:29.240280: + Largest cluster has 106704 voxels
201113-08:26:29,240 nipype.interface INFO:
stderr 2020-11-13T08:26:29.240605: + Mask now has 32560 voxels
201113-08:26:29,240 nipype.interface INFO:
stderr 2020-11-13T08:26:29.240751:++ Dilating automask
201113-08:26:29,248 nipype.interface INFO:
stderr 2020-11-13T08:26:29.248501: + Clustering voxels ...
201113-08:26:29,250 nipype.interface INFO:
stderr 2020-11-13T08:26:29.250933: + Largest cluster has 100578 voxels
201113-08:26:29,251 nipype.interface INFO:
stderr 2020-11-13T08:26:29.251272:++ 38686 voxels in the mask [out of 139264: 27.78%]
201113-08:26:29,251 nipype.interface INFO:
stderr 2020-11-13T08:26:29.251438:++ first 10 x-planes are zero [from R]
201113-08:26:29,251 nipype.interface INFO:
stderr 2020-11-13T08:26:29.251597:++ last 10 x-planes are zero [from L]
201113-08:26:29,251 nipype.interface INFO:
stderr 2020-11-13T08:26:29.251731:++ first 1 y-planes are zero [from P]
201113-08:26:29,251 nipype.interface INFO:
stderr 2020-11-13T08:26:29.251873:++ last 7 y-planes are zero [from A]
201113-08:26:29,252 nipype.interface INFO:
stderr 2020-11-13T08:26:29.252007:++ first 2 z-planes are zero [from I]
201113-08:26:29,252 nipype.interface INFO:
stderr 2020-11-13T08:26:29.252146:++ last 0 z-planes are zero [from S]
201113-08:26:29,255 nipype.interface INFO:
stderr 2020-11-13T08:26:29.255966:++ Output dataset ./uni_mask.nii.gz
201113-08:26:29,256 nipype.interface INFO:
stderr 2020-11-13T08:26:29.256143:++ applying mask to original data
201113-08:26:29,256 nipype.interface INFO:
stderr 2020-11-13T08:26:29.256812:++ Writing masked data
201113-08:26:29,270 nipype.interface INFO:
stderr 2020-11-13T08:26:29.270861:++ Output dataset ./uni_masked.nii.gz
201113-08:26:29,271 nipype.interface INFO:
stderr 2020-11-13T08:26:29.271117:++ CPU time = 0.000000 sec
201113-08:26:29,448 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-08:26:29,449 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks".
201113-08:26:29,456 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_first_pass/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:26:29,879 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-08:26:29,881 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201113-08:26:29,886 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-08:26:30,112 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201113-08:26:30,114 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201113-08:26:30,120 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:26:30,366 nipype.interface INFO:
stderr 2020-11-13T08:26:30.366656:++ no -frac option: defaulting to -union
201113-08:26:30,366 nipype.interface INFO:
stderr 2020-11-13T08:26:30.366978:++ processing 1 input dataset(s), NN=2...
201113-08:26:30,367 nipype.interface INFO:
stderr 2020-11-13T08:26:30.367147:++ padding all datasets by 0 (for dilations)
201113-08:26:30,371 nipype.interface INFO:
stderr 2020-11-13T08:26:30.371509:++ frac 0 over 1 volumes gives min count 0
201113-08:26:30,371 nipype.interface INFO:
stderr 2020-11-13T08:26:30.371915:++ voxel limits: 0 clipped, 38608 survived, 100656 were zero
201113-08:26:30,372 nipype.interface INFO:
stderr 2020-11-13T08:26:30.372104:++ writing result sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201113-08:26:30,376 nipype.interface INFO:
stderr 2020-11-13T08:26:30.376021:++ Output dataset ./sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201113-08:26:30,553 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201113-08:26:30,555 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/sinker_0_functional_brain_mask".
201113-08:26:30,562 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:26:30,791 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_brain_mask".
201113-08:26:30,793 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/functional_brain_mask_derivative_0".
201113-08:26:30,797 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201113-08:26:31,5 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201113-08:26:31,10 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:26:31,517 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201113-08:26:31,532 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.functional_brain_mask_derivative_0".
201113-08:26:31,534 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain".
201113-08:26:31,544 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_motion_correct_mcflirt/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-08:26:31,793 nipype.interface INFO:
stderr 2020-11-13T08:26:31.793675:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:26:31,794 nipype.interface INFO:
stderr 2020-11-13T08:26:31.794014:++ Authored by: A cast of thousands
201113-08:26:34,940 nipype.interface INFO:
stderr 2020-11-13T08:26:34.940518:++ Output dataset ./sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-08:26:35,154 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-08:26:35,155 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize".
201113-08:26:35,161 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/func_extract_brain/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201113-08:26:37,469 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-08:26:37,470 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201113-08:26:37,476 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-08:26:38,381 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201113-08:26:38,383 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201113-08:26:38,388 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_tgng_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-08:26:38,636 nipype.interface INFO:
stderr 2020-11-13T08:26:38.636905:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:26:38,637 nipype.interface INFO:
stderr 2020-11-13T08:26:38.637215:++ Authored by: KR Hammett & RW Cox
201113-08:26:39,206 nipype.interface INFO:
stderr 2020-11-13T08:26:39.206552:++ Output dataset ./sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-08:26:39,398 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.functional_mean".
201113-08:26:39,399 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-071_ses-2/qc_snr_0/_scan_tgng_run-2/std_dev".
201113-08:26:39,405 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-2/combine_masks/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/qc_snr_0/_scan_tgng_run-2/std_dev/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-08:26:39,647 nipype.interface INFO:
stderr 2020-11-13T08:26:39.647886:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:26:39,648 nipype.interface INFO:
stderr 2020-11-13T08:26:39.648341:++ Authored by: KR Hammett & RW Cox
201113-08:26:40,172 nipype.interface INFO:
stderr 2020-11-13T08:26:40.172064:++ Output dataset ./sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-08:26:40,386 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.qc_snr_0.std_dev".
201113-08:26:40,387 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/sinker_0_functional_preprocessed".
201113-08:26:40,395 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:26:40,623 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed".
201113-08:26:40,624 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize".
201113-08:26:40,629 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_normalize/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mask_normalize/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-08:26:41,710 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-08:26:41,712 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/sinker_0_functional_preprocessed_mask".
201113-08:26:41,719 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:26:41,949 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed_mask".
201113-08:26:41,951 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean".
201113-08:26:41,957 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/func_mean/sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-08:26:42,201 nipype.interface INFO:
stderr 2020-11-13T08:26:42.201261:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:26:42,201 nipype.interface INFO:
stderr 2020-11-13T08:26:42.201601:++ Authored by: KR Hammett & RW Cox
201113-08:26:42,757 nipype.interface INFO:
stderr 2020-11-13T08:26:42.757393:++ Output dataset ./sub-071_ses-2_task-tgng_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201113-08:26:42,943 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201113-08:26:42,945 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/sinker_0_mean_functional".
201113-08:26:42,952 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:26:43,180 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_mean_functional".
201113-08:26:43,182 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-2/norm_motion_params".
201113-08:26:43,189 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-08:26:43,422 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-08:26:43,424 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/sinker_0_slice_time_corrected".
201113-08:26:43,431 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:26:43,663 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_slice_time_corrected".
201113-08:26:43,664 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-2/sinker_0_raw_functional".
201113-08:26:43,672 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:26:44,16 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_raw_functional".
201113-08:26:44,17 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_tgng_run-2/check_func_scan".
201113-08:26:44,55 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201113-08:26:44,287 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.check_func_scan".
201113-08:26:44,297 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_tgng_run-1/select_scan_params".
201113-08:26:44,326 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-08:26:44,559 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.select_scan_params".
201113-08:26:44,570 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_tgng_run-1/s3_scan_params".
201113-08:26:44,577 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-08:26:44,809 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.s3_scan_params".
201113-08:26:44,813 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/scan_params_0".
201113-08:26:44,822 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-08:26:45,51 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.scan_params_0".
201113-08:26:45,54 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_tgng_run-1/selectrest".
201113-08:26:45,85 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-08:26:45,318 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.selectrest".
201113-08:26:45,329 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_tgng_run-1/check_for_s3".
201113-08:26:45,334 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-08:26:45,614 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.check_for_s3".
201113-08:26:45,615 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-071_ses-2/edit_func_0/_scan_tgng_run-1/func_get_idx".
201113-08:26:45,621 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-08:26:45,854 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.edit_func_0.func_get_idx".
201113-08:26:45,855 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-071_ses-2/edit_func_0/_scan_tgng_run-1/func_drop_trs".
201113-08:26:45,864 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-071/ses-2/func/sub-071_ses-2_task-tgng_run-1_bold.nii.gz[0..129] -expr "a" -prefix sub-071_ses-2_task-tgng_run-1_bold_calc.nii.gz
201113-08:26:46,114 nipype.interface INFO:
stderr 2020-11-13T08:26:46.114322:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:26:46,114 nipype.interface INFO:
stderr 2020-11-13T08:26:46.114692:++ Authored by: A cast of thousands
201113-08:26:51,806 nipype.interface INFO:
stderr 2020-11-13T08:26:51.806579:++ Output dataset ./sub-071_ses-2_task-tgng_run-1_bold_calc.nii.gz
201113-08:26:52,19 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.edit_func_0.func_drop_trs".
201113-08:26:52,21 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique".
201113-08:26:52,70 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-071_ses-2_task-tgng_run-1_bold_calc.nii.gz
201113-08:26:52,321 nipype.interface INFO:
stderr 2020-11-13T08:26:52.321879:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:26:52,322 nipype.interface INFO:
stderr 2020-11-13T08:26:52.322252:++ Authored by: RW Cox
201113-08:26:52,326 nipype.interface INFO:
stderr 2020-11-13T08:26:52.326025:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-071_ses-2_task-tgng_run-1_bold_calc.nii.gz
201113-08:26:52,326 nipype.interface INFO:
stderr 2020-11-13T08:26:52.326674: + deoblique
201113-08:26:52,326 nipype.interface INFO:
stderr 2020-11-13T08:26:52.326880: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-071_ses-2_task-tgng_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-071_ses-2_task-tgng_run-1_bold_calc.nii.gz in NIFTI storage)
201113-08:26:56,74 nipype.interface INFO:
stderr 2020-11-13T08:26:56.074912:++ 3drefit processed 1 datasets
201113-08:26:56,256 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-08:26:56,258 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient".
201113-08:26:56,263 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-2_task-tgng_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-071_ses-2_task-tgng_run-1_bold_calc.nii.gz
201113-08:27:00,712 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-08:27:00,714 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI".
201113-08:27:00,721 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-tgng_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-071_ses-2_task-tgng_run-1_bold_calc_resample.nii.gz
201113-08:27:00,972 nipype.interface INFO:
stderr 2020-11-13T08:27:00.972298:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:27:00,972 nipype.interface INFO:
stderr 2020-11-13T08:27:00.972800:++ Authored by: KR Hammett & RW Cox
201113-08:27:01,444 nipype.interface INFO:
stderr 2020-11-13T08:27:01.444352:++ Output dataset ./sub-071_ses-2_task-tgng_run-1_bold_calc_resample_tstat.nii.gz
201113-08:27:01,629 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-08:27:01,631 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref".
201113-08:27:01,639 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-2_task-tgng_run-1_bold_calc_resample.1D -1Dmatrix_save sub-071_ses-2_task-tgng_run-1_bold_calc_resample.aff12.1D -prefix sub-071_ses-2_task-tgng_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-071_ses-2_task-tgng_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-2_task-tgng_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref/sub-071_ses-2_task-tgng_run-1_bold_calc_resample.nii.gz
201113-08:27:01,889 nipype.interface INFO:
stderr 2020-11-13T08:27:01.889888:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:27:01,890 nipype.interface INFO:
stderr 2020-11-13T08:27:01.890253:++ Authored by: RW Cox
201113-08:27:01,900 nipype.interface INFO:
stderr 2020-11-13T08:27:01.900451:++ Coarse del was 10, replaced with 3
201113-08:28:48,858 nipype.interface INFO:
stderr 2020-11-13T08:28:48.858634:++ Max displacement in automask = 0.69 (mm) at sub-brick 1
201113-08:28:48,859 nipype.interface INFO:
stderr 2020-11-13T08:28:48.859088:++ Max delta displ in automask = 0.58 (mm) at sub-brick 99
201113-08:28:52,525 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-08:28:52,527 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion".
201113-08:28:52,532 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-tgng_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-071_ses-2_task-tgng_run-1_bold_calc_resample_volreg.nii.gz
201113-08:28:52,785 nipype.interface INFO:
stderr 2020-11-13T08:28:52.785801:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:28:52,786 nipype.interface INFO:
stderr 2020-11-13T08:28:52.786306:++ Authored by: KR Hammett & RW Cox
201113-08:28:53,263 nipype.interface INFO:
stderr 2020-11-13T08:28:53.263420:++ Output dataset ./sub-071_ses-2_task-tgng_run-1_bold_calc_resample_volreg_tstat.nii.gz
201113-08:28:53,450 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-08:28:53,451 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt".
201113-08:28:53,458 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-071_ses-2_task-tgng_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-071_ses-2_task-tgng_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-08:29:17,50 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-08:29:17,59 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calculate_FDJ".
201113-08:29:17,65 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201113-08:29:17,291 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201113-08:29:17,293 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/sinker_0_frame_wise_displacement_jenkinson".
201113-08:29:17,300 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:29:17,529 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201113-08:29:17,531 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/sinker_0_max_displacement".
201113-08:29:17,541 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:29:17,770 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_max_displacement".
201113-08:29:17,772 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/sinker_0_coordinate_transformation".
201113-08:29:17,789 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:29:18,54 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_coordinate_transformation".
201113-08:29:18,65 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull".
201113-08:29:18,72 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf.nii.gz
201113-08:29:18,319 nipype.interface INFO:
stderr 2020-11-13T08:29:18.319433:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:29:18,319 nipype.interface INFO:
stderr 2020-11-13T08:29:18.319784:++ Authored by: KR Hammett & RW Cox
201113-08:29:18,832 nipype.interface INFO:
stderr 2020-11-13T08:29:18.832677:++ Output dataset ./sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat.nii.gz
201113-08:29:19,18 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-08:29:19,19 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass".
201113-08:29:19,25 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-08:29:20,873 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-08:29:20,875 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate".
201113-08:29:20,881 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-08:29:21,581 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-08:29:21,583 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask".
201113-08:29:21,589 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask/sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-08:29:22,49 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-08:29:22,50 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize".
201113-08:29:22,57 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize/sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-08:29:22,298 nipype.interface INFO:
stderr 2020-11-13T08:29:22.298786:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:30:40,223 nipype.interface INFO:
stderr 2020-11-13T08:30:40.223500: + Pre-processing: IAV..UW[s4417]Im
201113-08:30:40,239 nipype.interface INFO:
stderr 2020-11-13T08:30:40.239478:++ Output dataset ./uni.nii.gz
201113-08:30:40,239 nipype.interface INFO:
stderr 2020-11-13T08:30:40.239757:++ ===== Elapsed = 77.9 sec
201113-08:30:40,457 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-08:30:40,459 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass".
201113-08:30:40,466 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201113-08:30:40,707 nipype.interface INFO:
stderr 2020-11-13T08:30:40.707802:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:30:40,708 nipype.interface INFO:
stderr 2020-11-13T08:30:40.708321:++ Authored by: Emperor Zhark
201113-08:30:40,710 nipype.interface INFO:
stderr 2020-11-13T08:30:40.710312:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201113-08:30:40,713 nipype.interface INFO:
stderr 2020-11-13T08:30:40.713869:++ Forming automask
201113-08:30:40,715 nipype.interface INFO:
stderr 2020-11-13T08:30:40.715437: + Fixed clip level = 409.545319
201113-08:30:40,718 nipype.interface INFO:
stderr 2020-11-13T08:30:40.718768: + Used gradual clip level = 362.752655 .. 489.166473
201113-08:30:40,718 nipype.interface INFO:
stderr 2020-11-13T08:30:40.718968: + Number voxels above clip level = 32000
201113-08:30:40,719 nipype.interface INFO:
stderr 2020-11-13T08:30:40.719147: + Clustering voxels ...
201113-08:30:40,720 nipype.interface INFO:
stderr 2020-11-13T08:30:40.720703: + Largest cluster has 31998 voxels
201113-08:30:40,722 nipype.interface INFO:
stderr 2020-11-13T08:30:40.722126: + Clustering voxels ...
201113-08:30:40,723 nipype.interface INFO:
stderr 2020-11-13T08:30:40.723265: + Largest cluster has 31628 voxels
201113-08:30:40,726 nipype.interface INFO:
stderr 2020-11-13T08:30:40.726625: + Filled 843 voxels in small holes; now have 32471 voxels
201113-08:30:40,731 nipype.interface INFO:
stderr 2020-11-13T08:30:40.731108: + Filled 5 voxels in large holes; now have 32476 voxels
201113-08:30:40,732 nipype.interface INFO:
stderr 2020-11-13T08:30:40.732390: + Clustering voxels ...
201113-08:30:40,733 nipype.interface INFO:
stderr 2020-11-13T08:30:40.733508: + Largest cluster has 32474 voxels
201113-08:30:40,733 nipype.interface INFO:
stderr 2020-11-13T08:30:40.733731: + Clustering non-brain voxels ...
201113-08:30:40,733 nipype.interface INFO:
stderr 2020-11-13T08:30:40.733871: + Clustering voxels ...
201113-08:30:40,736 nipype.interface INFO:
stderr 2020-11-13T08:30:40.736722: + Largest cluster has 106641 voxels
201113-08:30:40,737 nipype.interface INFO:
stderr 2020-11-13T08:30:40.737052: + Mask now has 32623 voxels
201113-08:30:40,737 nipype.interface INFO:
stderr 2020-11-13T08:30:40.737202:++ Dilating automask
201113-08:30:40,747 nipype.interface INFO:
stderr 2020-11-13T08:30:40.747294: + Clustering voxels ...
201113-08:30:40,749 nipype.interface INFO:
stderr 2020-11-13T08:30:40.749667: + Largest cluster has 100488 voxels
201113-08:30:40,750 nipype.interface INFO:
stderr 2020-11-13T08:30:40.749994:++ 38776 voxels in the mask [out of 139264: 27.84%]
201113-08:30:40,750 nipype.interface INFO:
stderr 2020-11-13T08:30:40.750182:++ first 10 x-planes are zero [from R]
201113-08:30:40,750 nipype.interface INFO:
stderr 2020-11-13T08:30:40.750347:++ last 9 x-planes are zero [from L]
201113-08:30:40,750 nipype.interface INFO:
stderr 2020-11-13T08:30:40.750483:++ first 1 y-planes are zero [from P]
201113-08:30:40,750 nipype.interface INFO:
stderr 2020-11-13T08:30:40.750627:++ last 7 y-planes are zero [from A]
201113-08:30:40,750 nipype.interface INFO:
stderr 2020-11-13T08:30:40.750766:++ first 2 z-planes are zero [from I]
201113-08:30:40,750 nipype.interface INFO:
stderr 2020-11-13T08:30:40.750896:++ last 0 z-planes are zero [from S]
201113-08:30:40,754 nipype.interface INFO:
stderr 2020-11-13T08:30:40.754952:++ Output dataset ./uni_mask.nii.gz
201113-08:30:40,755 nipype.interface INFO:
stderr 2020-11-13T08:30:40.755132:++ applying mask to original data
201113-08:30:40,755 nipype.interface INFO:
stderr 2020-11-13T08:30:40.755803:++ Writing masked data
201113-08:30:40,769 nipype.interface INFO:
stderr 2020-11-13T08:30:40.769460:++ Output dataset ./uni_masked.nii.gz
201113-08:30:40,769 nipype.interface INFO:
stderr 2020-11-13T08:30:40.769781:++ CPU time = 0.000000 sec
201113-08:30:40,954 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-08:30:40,956 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks".
201113-08:30:40,962 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:30:41,395 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-08:30:41,396 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/cal_DVARS".
201113-08:30:41,402 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201113-08:30:42,107 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201113-08:30:42,108 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain".
201113-08:30:42,116 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-08:30:42,365 nipype.interface INFO:
stderr 2020-11-13T08:30:42.364984:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:30:42,365 nipype.interface INFO:
stderr 2020-11-13T08:30:42.365310:++ Authored by: A cast of thousands
201113-08:30:45,166 nipype.interface INFO:
stderr 2020-11-13T08:30:45.166689:++ Output dataset ./sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-08:30:45,385 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-08:30:45,386 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize".
201113-08:30:45,392 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain/sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201113-08:30:47,635 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-08:30:47,637 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize".
201113-08:30:47,642 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize/sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-08:30:48,694 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-08:30:48,696 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean".
201113-08:30:48,702 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-08:30:48,946 nipype.interface INFO:
stderr 2020-11-13T08:30:48.946651:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:30:48,947 nipype.interface INFO:
stderr 2020-11-13T08:30:48.947064:++ Authored by: KR Hammett & RW Cox
201113-08:30:49,252 nipype.interface INFO:
stderr 2020-11-13T08:30:49.252544:++ Output dataset ./sub-071_ses-2_task-tgng_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201113-08:30:49,467 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201113-08:30:49,468 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/norm_motion_params".
201113-08:30:49,476 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-08:30:49,704 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-08:30:49,705 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/qc_motion_0/_scan_tgng_run-1/motion_plot".
201113-08:30:49,709 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201113-08:30:50,154 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.qc_motion_0.motion_plot".
201113-08:30:50,155 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/sinker_0_qc___movement_trans_plot".
201113-08:30:50,161 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:30:50,373 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc___movement_trans_plot/_scan_tgng_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc/movement_trans_plot/_scan_tgng_run-1/motion_trans_plot.png
201113-08:30:50,389 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_trans_plot".
201113-08:30:50,390 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/sinker_0_qc___movement_rot_plot".
201113-08:30:50,397 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:30:50,605 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc___movement_rot_plot/_scan_tgng_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc/movement_rot_plot/_scan_tgng_run-1/motion_rot_plot.png
201113-08:30:50,622 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_rot_plot".
201113-08:30:50,624 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calc_motion_parameters".
201113-08:30:50,630 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201113-08:30:50,863 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201113-08:30:50,865 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/sinker_0_motion_params".
201113-08:30:50,872 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:30:51,100 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_motion_params".
201113-08:30:51,102 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calculate_FD".
201113-08:30:51,106 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201113-08:30:51,336 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201113-08:30:51,337 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/sinker_0_frame_wise_displacement_power".
201113-08:30:51,346 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:30:51,575 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_power".
201113-08:30:51,577 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/calc_power_parameters".
201113-08:30:51,582 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201113-08:30:51,815 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201113-08:30:51,816 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/sinker_0_power_params".
201113-08:30:51,824 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:30:52,55 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_power_params".
201113-08:30:52,56 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/sinker_0_movement_parameters".
201113-08:30:52,63 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:30:52,295 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_movement_parameters".
201113-08:30:52,297 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/func_despiked_0".
201113-08:30:52,302 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-071_ses-2_task-tgng_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/func_despiked_0/sub-071_ses-2_task-tgng_run-1_bold_calc.nii.gz
201113-08:30:52,552 nipype.interface INFO:
stderr 2020-11-13T08:30:52.552269:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:30:52,552 nipype.interface INFO:
stderr 2020-11-13T08:30:52.552615:++ Authored by: RW Cox
201113-08:30:52,554 nipype.interface INFO:
stderr 2020-11-13T08:30:52.554733:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-08:30:52,554 nipype.interface INFO:
stderr 2020-11-13T08:30:52.554733: such as /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/func_despiked_0/sub-071_ses-2_task-tgng_run-1_bold_calc.nii.gz,
201113-08:30:52,555 nipype.interface INFO:
stderr 2020-11-13T08:30:52.554733: or viewing/combining it with volumes of differing obliquity,
201113-08:30:52,555 nipype.interface INFO:
stderr 2020-11-13T08:30:52.554733: you should consider running:
201113-08:30:52,555 nipype.interface INFO:
stderr 2020-11-13T08:30:52.554733: 3dWarp -deoblique
201113-08:30:52,555 nipype.interface INFO:
stderr 2020-11-13T08:30:52.554733: on this and other oblique datasets in the same session.
201113-08:30:52,555 nipype.interface INFO:
stderr 2020-11-13T08:30:52.554733: See 3dWarp -help for details.
201113-08:30:52,555 nipype.interface INFO:
stderr 2020-11-13T08:30:52.555550:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/func_despiked_0/sub-071_ses-2_task-tgng_run-1_bold_calc.nii.gz is 30.880365 degrees from plumb.
201113-08:30:52,555 nipype.interface INFO:
stderr 2020-11-13T08:30:52.555732:++ Input dataset is in short format, but output will be in float format
201113-08:30:52,555 nipype.interface INFO:
stderr 2020-11-13T08:30:52.555897:++ ignoring first 0 time points, using last 130
201113-08:30:52,556 nipype.interface INFO:
stderr 2020-11-13T08:30:52.556068:++ using 130 time points => -corder 4
201113-08:30:52,556 nipype.interface INFO:
stderr 2020-11-13T08:30:52.556230:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/func_despiked_0/sub-071_ses-2_task-tgng_run-1_bold_calc.nii.gz
201113-08:30:53,30 nipype.interface INFO:
stderr 2020-11-13T08:30:53.030330:++ 36230 voxels in the automask [out of 139264 in dataset]
201113-08:30:53,36 nipype.interface INFO:
stderr 2020-11-13T08:30:53.036376:++ 60649 voxels in the dilated automask [out of 139264 in dataset]
201113-08:30:53,47 nipype.interface INFO:
stderr 2020-11-13T08:30:53.047194:++ Procesing time series with OLD model fit algorithm
201113-08:30:53,47 nipype.interface INFO:
stderr 2020-11-13T08:30:53.047375:++ smash edit thresholds: 3.1 .. 5.0 MADs
201113-08:30:53,47 nipype.interface INFO:
stderr 2020-11-13T08:30:53.047534: + [ 3.457% .. 0.072% of normal distribution]
201113-08:30:53,47 nipype.interface INFO:
stderr 2020-11-13T08:30:53.047682: + [ 8.839% .. 3.125% of Laplace distribution]
201113-08:30:53,47 nipype.interface INFO:
stderr 2020-11-13T08:30:53.047836:++ start OpenMP thread #0
201113-08:30:58,899 nipype.interface INFO:
stderr 2020-11-13T08:30:58.899339:..........................
201113-08:30:58,899 nipype.interface INFO:
stderr 2020-11-13T08:30:58.899642:++ Elapsed despike time = 5s 852ms
201113-08:30:58,899 nipype.interface INFO:
stderr 2020-11-13T08:30:58.899786:
201113-08:30:58,900 nipype.interface INFO:
stderr 2020-11-13T08:30:58.900616:++ FINAL: 7884370 data points, 500370 edits [6.346%], 48923 big edits [0.621%]
201113-08:31:03,130 nipype.interface INFO:
stderr 2020-11-13T08:31:03.130001:++ Output dataset ./sub-071_ses-2_task-tgng_run-1_bold_calc_despike.nii.gz
201113-08:31:03,329 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_despiked_0".
201113-08:31:03,331 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing".
201113-08:31:03,339 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-08:31:03,340 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing/sub-071_ses-2_task-tgng_run-1_bold_calc_despike.nii.gz
201113-08:31:03,553 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-08:31:03,594 nipype.interface INFO:
stderr 2020-11-13T08:31:03.593998:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:31:03,598 nipype.interface INFO:
stderr 2020-11-13T08:31:03.597998:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-08:31:03,598 nipype.interface INFO:
stderr 2020-11-13T08:31:03.597998: such as /outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing/sub-071_ses-2_task-tgng_run-1_bold_calc_despike.nii.gz,
201113-08:31:03,598 nipype.interface INFO:
stderr 2020-11-13T08:31:03.597998: or viewing/combining it with volumes of differing obliquity,
201113-08:31:03,598 nipype.interface INFO:
stderr 2020-11-13T08:31:03.597998: you should consider running:
201113-08:31:03,598 nipype.interface INFO:
stderr 2020-11-13T08:31:03.597998: 3dWarp -deoblique
201113-08:31:03,598 nipype.interface INFO:
stderr 2020-11-13T08:31:03.597998: on this and other oblique datasets in the same session.
201113-08:31:03,598 nipype.interface INFO:
stderr 2020-11-13T08:31:03.597998: See 3dWarp -help for details.
201113-08:31:03,599 nipype.interface INFO:
stderr 2020-11-13T08:31:03.599066:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_tgng_run-1/slice_timing/sub-071_ses-2_task-tgng_run-1_bold_calc_despike.nii.gz is 30.880365 degrees from plumb.
201113-08:31:08,42 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_slice_timing_correction_0.slice_timing".
201113-08:31:08,43 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique".
201113-08:31:08,100 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift.nii.gz
201113-08:31:08,349 nipype.interface INFO:
stderr 2020-11-13T08:31:08.349918:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:31:08,350 nipype.interface INFO:
stderr 2020-11-13T08:31:08.350362:++ Authored by: RW Cox
201113-08:31:08,360 nipype.interface INFO:
stderr 2020-11-13T08:31:08.359993:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift.nii.gz
201113-08:31:08,361 nipype.interface INFO:
stderr 2020-11-13T08:31:08.361158: + deoblique
201113-08:31:08,361 nipype.interface INFO:
stderr 2020-11-13T08:31:08.361468: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_deoblique/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201113-08:31:10,576 nipype.interface INFO:
stderr 2020-11-13T08:31:10.576105:++ 3drefit processed 1 datasets
201113-08:31:10,758 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-08:31:10,759 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient".
201113-08:31:10,766 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift.nii.gz
201113-08:31:13,625 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-08:31:13,626 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI".
201113-08:31:13,632 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-08:31:13,882 nipype.interface INFO:
stderr 2020-11-13T08:31:13.882546:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:31:13,882 nipype.interface INFO:
stderr 2020-11-13T08:31:13.882883:++ Authored by: KR Hammett & RW Cox
201113-08:31:14,489 nipype.interface INFO:
stderr 2020-11-13T08:31:14.489527:++ Output dataset ./sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201113-08:31:14,672 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-08:31:14,674 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref".
201113-08:31:14,680 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_RPI/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_generate_ref/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-08:31:14,931 nipype.interface INFO:
stderr 2020-11-13T08:31:14.931320:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:31:14,931 nipype.interface INFO:
stderr 2020-11-13T08:31:14.931799:++ Authored by: RW Cox
201113-08:31:14,942 nipype.interface INFO:
stderr 2020-11-13T08:31:14.942711:++ Coarse del was 10, replaced with 3
201113-08:33:02,17 nipype.interface INFO:
stderr 2020-11-13T08:33:02.017050:++ Max displacement in automask = 0.68 (mm) at sub-brick 1
201113-08:33:02,17 nipype.interface INFO:
stderr 2020-11-13T08:33:02.017588:++ Max delta displ in automask = 0.42 (mm) at sub-brick 99
201113-08:33:06,771 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-08:33:06,773 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion".
201113-08:33:06,779 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201113-08:33:07,31 nipype.interface INFO:
stderr 2020-11-13T08:33:07.031326:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:33:07,31 nipype.interface INFO:
stderr 2020-11-13T08:33:07.031690:++ Authored by: KR Hammett & RW Cox
201113-08:33:07,830 nipype.interface INFO:
stderr 2020-11-13T08:33:07.829937:++ Output dataset ./sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201113-08:33:08,26 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-08:33:08,28 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt".
201113-08:33:08,36 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_reorient/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_get_mean_motion/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-08:33:29,371 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-08:33:29,379 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/sinker_0_motion_correct".
201113-08:33:29,386 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:33:29,611 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_motion_correct".
201113-08:33:29,613 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull".
201113-08:33:29,620 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201113-08:33:29,874 nipype.interface INFO:
stderr 2020-11-13T08:33:29.874353:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:33:29,874 nipype.interface INFO:
stderr 2020-11-13T08:33:29.874780:++ Authored by: KR Hammett & RW Cox
201113-08:33:30,514 nipype.interface INFO:
stderr 2020-11-13T08:33:30.514071:++ Output dataset ./sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201113-08:33:30,703 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-08:33:30,704 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass".
201113-08:33:30,710 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_mean_skull/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-08:33:32,571 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-08:33:32,573 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate".
201113-08:33:32,578 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-08:33:33,258 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-08:33:33,259 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask".
201113-08:33:33,266 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_dilate/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_mask/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-08:33:33,711 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-08:33:33,713 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize".
201113-08:33:33,719 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/unifize/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-08:33:33,966 nipype.interface INFO:
stderr 2020-11-13T08:33:33.965970:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:34:51,814 nipype.interface INFO:
stderr 2020-11-13T08:34:51.814875: + Pre-processing: IAV..UW[s4437]Im
201113-08:34:51,830 nipype.interface INFO:
stderr 2020-11-13T08:34:51.830856:++ Output dataset ./uni.nii.gz
201113-08:34:51,831 nipype.interface INFO:
stderr 2020-11-13T08:34:51.831080:++ ===== Elapsed = 77.9 sec
201113-08:34:52,46 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-08:34:52,48 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass".
201113-08:34:52,53 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201113-08:34:52,319 nipype.interface INFO:
stderr 2020-11-13T08:34:52.319462:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:34:52,319 nipype.interface INFO:
stderr 2020-11-13T08:34:52.319763:++ Authored by: Emperor Zhark
201113-08:34:52,321 nipype.interface INFO:
stderr 2020-11-13T08:34:52.321548:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni.nii.gz
201113-08:34:52,324 nipype.interface INFO:
stderr 2020-11-13T08:34:52.324855:++ Forming automask
201113-08:34:52,326 nipype.interface INFO:
stderr 2020-11-13T08:34:52.326229: + Fixed clip level = 409.528809
201113-08:34:52,329 nipype.interface INFO:
stderr 2020-11-13T08:34:52.329560: + Used gradual clip level = 363.006378 .. 488.821838
201113-08:34:52,329 nipype.interface INFO:
stderr 2020-11-13T08:34:52.329759: + Number voxels above clip level = 31999
201113-08:34:52,329 nipype.interface INFO:
stderr 2020-11-13T08:34:52.329909: + Clustering voxels ...
201113-08:34:52,331 nipype.interface INFO:
stderr 2020-11-13T08:34:52.331049: + Largest cluster has 31997 voxels
201113-08:34:52,332 nipype.interface INFO:
stderr 2020-11-13T08:34:52.332457: + Clustering voxels ...
201113-08:34:52,333 nipype.interface INFO:
stderr 2020-11-13T08:34:52.333594: + Largest cluster has 31628 voxels
201113-08:34:52,336 nipype.interface INFO:
stderr 2020-11-13T08:34:52.336954: + Filled 842 voxels in small holes; now have 32470 voxels
201113-08:34:52,341 nipype.interface INFO:
stderr 2020-11-13T08:34:52.341195: + Filled 5 voxels in large holes; now have 32475 voxels
201113-08:34:52,342 nipype.interface INFO:
stderr 2020-11-13T08:34:52.342460: + Clustering voxels ...
201113-08:34:52,343 nipype.interface INFO:
stderr 2020-11-13T08:34:52.343576: + Largest cluster has 32473 voxels
201113-08:34:52,343 nipype.interface INFO:
stderr 2020-11-13T08:34:52.343801: + Clustering non-brain voxels ...
201113-08:34:52,343 nipype.interface INFO:
stderr 2020-11-13T08:34:52.343939: + Clustering voxels ...
201113-08:34:52,346 nipype.interface INFO:
stderr 2020-11-13T08:34:52.346740: + Largest cluster has 106642 voxels
201113-08:34:52,347 nipype.interface INFO:
stderr 2020-11-13T08:34:52.347068: + Mask now has 32622 voxels
201113-08:34:52,347 nipype.interface INFO:
stderr 2020-11-13T08:34:52.347216:++ Dilating automask
201113-08:34:52,356 nipype.interface INFO:
stderr 2020-11-13T08:34:52.356737: + Clustering voxels ...
201113-08:34:52,359 nipype.interface INFO:
stderr 2020-11-13T08:34:52.359068: + Largest cluster has 100497 voxels
201113-08:34:52,359 nipype.interface INFO:
stderr 2020-11-13T08:34:52.359395:++ 38767 voxels in the mask [out of 139264: 27.84%]
201113-08:34:52,359 nipype.interface INFO:
stderr 2020-11-13T08:34:52.359558:++ first 10 x-planes are zero [from R]
201113-08:34:52,359 nipype.interface INFO:
stderr 2020-11-13T08:34:52.359714:++ last 9 x-planes are zero [from L]
201113-08:34:52,359 nipype.interface INFO:
stderr 2020-11-13T08:34:52.359847:++ first 1 y-planes are zero [from P]
201113-08:34:52,360 nipype.interface INFO:
stderr 2020-11-13T08:34:52.359988:++ last 7 y-planes are zero [from A]
201113-08:34:52,360 nipype.interface INFO:
stderr 2020-11-13T08:34:52.360192:++ first 2 z-planes are zero [from I]
201113-08:34:52,360 nipype.interface INFO:
stderr 2020-11-13T08:34:52.360337:++ last 0 z-planes are zero [from S]
201113-08:34:52,364 nipype.interface INFO:
stderr 2020-11-13T08:34:52.364440:++ Output dataset ./uni_mask.nii.gz
201113-08:34:52,364 nipype.interface INFO:
stderr 2020-11-13T08:34:52.364611:++ applying mask to original data
201113-08:34:52,365 nipype.interface INFO:
stderr 2020-11-13T08:34:52.365285:++ Writing masked data
201113-08:34:52,379 nipype.interface INFO:
stderr 2020-11-13T08:34:52.379494:++ Output dataset ./uni_masked.nii.gz
201113-08:34:52,379 nipype.interface INFO:
stderr 2020-11-13T08:34:52.379812:++ CPU time = 0.000000 sec
201113-08:34:52,564 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-08:34:52,566 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks".
201113-08:34:52,572 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_first_pass/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:34:53,9 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-08:34:53,11 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201113-08:34:53,16 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-08:34:53,247 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201113-08:34:53,248 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201113-08:34:53,255 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:34:53,497 nipype.interface INFO:
stderr 2020-11-13T08:34:53.497581:++ no -frac option: defaulting to -union
201113-08:34:53,497 nipype.interface INFO:
stderr 2020-11-13T08:34:53.497892:++ processing 1 input dataset(s), NN=2...
201113-08:34:53,498 nipype.interface INFO:
stderr 2020-11-13T08:34:53.498055:++ padding all datasets by 0 (for dilations)
201113-08:34:53,502 nipype.interface INFO:
stderr 2020-11-13T08:34:53.502409:++ frac 0 over 1 volumes gives min count 0
201113-08:34:53,502 nipype.interface INFO:
stderr 2020-11-13T08:34:53.502811:++ voxel limits: 0 clipped, 38716 survived, 100548 were zero
201113-08:34:53,503 nipype.interface INFO:
stderr 2020-11-13T08:34:53.502995:++ writing result sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201113-08:34:53,507 nipype.interface INFO:
stderr 2020-11-13T08:34:53.507168:++ Output dataset ./sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201113-08:34:53,686 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201113-08:34:53,687 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/sinker_0_functional_brain_mask".
201113-08:34:53,694 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:34:53,922 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_brain_mask".
201113-08:34:53,924 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/functional_brain_mask_derivative_0".
201113-08:34:53,929 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201113-08:34:54,141 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201113-08:34:54,147 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:34:54,652 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201113-08:34:54,668 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.functional_brain_mask_derivative_0".
201113-08:34:54,670 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain".
201113-08:34:54,679 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_motion_correct_mcflirt/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-08:34:54,925 nipype.interface INFO:
stderr 2020-11-13T08:34:54.925060:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:34:54,925 nipype.interface INFO:
stderr 2020-11-13T08:34:54.925370:++ Authored by: A cast of thousands
201113-08:34:58,62 nipype.interface INFO:
stderr 2020-11-13T08:34:58.062712:++ Output dataset ./sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-08:34:58,248 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-08:34:58,249 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize".
201113-08:34:58,255 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/func_extract_brain/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201113-08:35:00,598 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-08:35:00,599 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201113-08:35:00,605 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-08:35:01,536 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201113-08:35:01,537 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201113-08:35:01,542 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_tgng_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-08:35:01,791 nipype.interface INFO:
stderr 2020-11-13T08:35:01.790997:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:35:01,791 nipype.interface INFO:
stderr 2020-11-13T08:35:01.791316:++ Authored by: KR Hammett & RW Cox
201113-08:35:02,364 nipype.interface INFO:
stderr 2020-11-13T08:35:02.364173:++ Output dataset ./sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-08:35:02,555 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.functional_mean".
201113-08:35:02,556 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-071_ses-2/qc_snr_0/_scan_tgng_run-1/std_dev".
201113-08:35:02,564 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_tgng_run-1/combine_masks/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/qc_snr_0/_scan_tgng_run-1/std_dev/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-08:35:02,810 nipype.interface INFO:
stderr 2020-11-13T08:35:02.810692:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:35:02,811 nipype.interface INFO:
stderr 2020-11-13T08:35:02.810997:++ Authored by: KR Hammett & RW Cox
201113-08:35:03,332 nipype.interface INFO:
stderr 2020-11-13T08:35:03.332376:++ Output dataset ./sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-08:35:03,521 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.qc_snr_0.std_dev".
201113-08:35:03,523 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/sinker_0_functional_preprocessed".
201113-08:35:03,530 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:35:03,760 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed".
201113-08:35:03,762 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize".
201113-08:35:03,767 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_normalize/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mask_normalize/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-08:35:04,842 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-08:35:04,844 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/sinker_0_functional_preprocessed_mask".
201113-08:35:04,851 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:35:05,84 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed_mask".
201113-08:35:05,87 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean".
201113-08:35:05,94 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/func_mean/sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-08:35:05,340 nipype.interface INFO:
stderr 2020-11-13T08:35:05.340273:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:35:05,340 nipype.interface INFO:
stderr 2020-11-13T08:35:05.340672:++ Authored by: KR Hammett & RW Cox
201113-08:35:05,894 nipype.interface INFO:
stderr 2020-11-13T08:35:05.894643:++ Output dataset ./sub-071_ses-2_task-tgng_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201113-08:35:06,106 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201113-08:35:06,108 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/sinker_0_mean_functional".
201113-08:35:06,115 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:35:06,343 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_mean_functional".
201113-08:35:06,345 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_tgng_run-1/norm_motion_params".
201113-08:35:06,351 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-08:35:06,583 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-08:35:06,585 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/sinker_0_slice_time_corrected".
201113-08:35:06,592 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:35:06,827 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_slice_time_corrected".
201113-08:35:06,828 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_tgng_run-1/sinker_0_raw_functional".
201113-08:35:06,836 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:35:07,191 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_raw_functional".
201113-08:35:07,193 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_tgng_run-1/check_func_scan".
201113-08:35:07,224 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201113-08:35:07,456 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.check_func_scan".
201113-08:35:07,467 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_rest_run-1/select_scan_params".
201113-08:35:07,497 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-08:35:07,728 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.select_scan_params".
201113-08:35:07,739 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_rest_run-1/s3_scan_params".
201113-08:35:07,746 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-08:35:07,976 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.s3_scan_params".
201113-08:35:07,978 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/scan_params_0".
201113-08:35:07,987 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-08:35:08,221 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.scan_params_0".
201113-08:35:08,224 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_rest_run-1/selectrest".
201113-08:35:08,256 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-08:35:08,488 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.selectrest".
201113-08:35:08,498 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_rest_run-1/check_for_s3".
201113-08:35:08,504 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-08:35:08,785 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.check_for_s3".
201113-08:35:08,786 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-071_ses-2/edit_func_0/_scan_rest_run-1/func_get_idx".
201113-08:35:08,793 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-08:35:09,22 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.edit_func_0.func_get_idx".
201113-08:35:09,24 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-071_ses-2/edit_func_0/_scan_rest_run-1/func_drop_trs".
201113-08:35:09,31 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-071/ses-2/func/sub-071_ses-2_task-rest_run-1_bold.nii.gz[0..179] -expr "a" -prefix sub-071_ses-2_task-rest_run-1_bold_calc.nii.gz
201113-08:35:09,283 nipype.interface INFO:
stderr 2020-11-13T08:35:09.283043:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:35:09,283 nipype.interface INFO:
stderr 2020-11-13T08:35:09.283832:++ Authored by: A cast of thousands
201113-08:35:17,145 nipype.interface INFO:
stderr 2020-11-13T08:35:17.145000:++ Output dataset ./sub-071_ses-2_task-rest_run-1_bold_calc.nii.gz
201113-08:35:17,366 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.edit_func_0.func_drop_trs".
201113-08:35:17,367 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique".
201113-08:35:17,426 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-071_ses-2_task-rest_run-1_bold_calc.nii.gz
201113-08:35:17,671 nipype.interface INFO:
stderr 2020-11-13T08:35:17.671282:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:35:17,671 nipype.interface INFO:
stderr 2020-11-13T08:35:17.671622:++ Authored by: RW Cox
201113-08:35:17,674 nipype.interface INFO:
stderr 2020-11-13T08:35:17.674903:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-071_ses-2_task-rest_run-1_bold_calc.nii.gz
201113-08:35:17,675 nipype.interface INFO:
stderr 2020-11-13T08:35:17.675525: + deoblique
201113-08:35:17,675 nipype.interface INFO:
stderr 2020-11-13T08:35:17.675712: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-071_ses-2_task-rest_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-071_ses-2_task-rest_run-1_bold_calc.nii.gz in NIFTI storage)
201113-08:35:23,26 nipype.interface INFO:
stderr 2020-11-13T08:35:23.026586:++ 3drefit processed 1 datasets
201113-08:35:23,209 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-08:35:23,211 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient".
201113-08:35:23,217 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-2_task-rest_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient/sub-071_ses-2_task-rest_run-1_bold_calc.nii.gz
201113-08:35:29,371 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-08:35:29,373 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI".
201113-08:35:29,380 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-rest_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI/sub-071_ses-2_task-rest_run-1_bold_calc_resample.nii.gz
201113-08:35:29,624 nipype.interface INFO:
stderr 2020-11-13T08:35:29.624620:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:35:29,624 nipype.interface INFO:
stderr 2020-11-13T08:35:29.624919:++ Authored by: KR Hammett & RW Cox
201113-08:35:30,217 nipype.interface INFO:
stderr 2020-11-13T08:35:30.217289:++ Output dataset ./sub-071_ses-2_task-rest_run-1_bold_calc_resample_tstat.nii.gz
201113-08:35:30,399 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-08:35:30,401 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_generate_ref".
201113-08:35:30,407 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-2_task-rest_run-1_bold_calc_resample.1D -1Dmatrix_save sub-071_ses-2_task-rest_run-1_bold_calc_resample.aff12.1D -prefix sub-071_ses-2_task-rest_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI/sub-071_ses-2_task-rest_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-2_task-rest_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_generate_ref/sub-071_ses-2_task-rest_run-1_bold_calc_resample.nii.gz
201113-08:35:30,654 nipype.interface INFO:
stderr 2020-11-13T08:35:30.654143:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:35:30,654 nipype.interface INFO:
stderr 2020-11-13T08:35:30.654449:++ Authored by: RW Cox
201113-08:35:30,664 nipype.interface INFO:
stderr 2020-11-13T08:35:30.664070:++ Coarse del was 10, replaced with 3
201113-08:37:53,97 nipype.interface INFO:
stderr 2020-11-13T08:37:53.096909:++ Max displacement in automask = 4.58 (mm) at sub-brick 80
201113-08:37:53,97 nipype.interface INFO:
stderr 2020-11-13T08:37:53.097394:++ Max delta displ in automask = 6.43 (mm) at sub-brick 80
201113-08:37:58,359 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-08:37:58,362 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion".
201113-08:37:58,367 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-rest_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion/sub-071_ses-2_task-rest_run-1_bold_calc_resample_volreg.nii.gz
201113-08:37:58,622 nipype.interface INFO:
stderr 2020-11-13T08:37:58.622644:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:37:58,622 nipype.interface INFO:
stderr 2020-11-13T08:37:58.622946:++ Authored by: KR Hammett & RW Cox
201113-08:37:59,229 nipype.interface INFO:
stderr 2020-11-13T08:37:59.229531:++ Output dataset ./sub-071_ses-2_task-rest_run-1_bold_calc_resample_volreg_tstat.nii.gz
201113-08:37:59,412 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-08:37:59,414 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt".
201113-08:37:59,420 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient/sub-071_ses-2_task-rest_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt/sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion/sub-071_ses-2_task-rest_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-08:38:45,756 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-08:38:45,767 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/calculate_FDJ".
201113-08:38:45,774 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201113-08:38:46,5 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201113-08:38:46,6 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/sinker_0_frame_wise_displacement_jenkinson".
201113-08:38:46,12 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:38:46,241 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201113-08:38:46,243 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/sinker_0_max_displacement".
201113-08:38:46,251 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:38:46,482 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_max_displacement".
201113-08:38:46,483 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/sinker_0_coordinate_transformation".
201113-08:38:46,507 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:38:46,787 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_coordinate_transformation".
201113-08:38:46,801 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull".
201113-08:38:46,809 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull/sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf.nii.gz
201113-08:38:47,68 nipype.interface INFO:
stderr 2020-11-13T08:38:47.068452:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:38:47,68 nipype.interface INFO:
stderr 2020-11-13T08:38:47.068836:++ Authored by: KR Hammett & RW Cox
201113-08:38:47,722 nipype.interface INFO:
stderr 2020-11-13T08:38:47.722854:++ Output dataset ./sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat.nii.gz
201113-08:38:47,911 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-08:38:47,913 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass".
201113-08:38:47,919 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull/sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-08:38:49,771 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-08:38:49,773 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate".
201113-08:38:49,779 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate/sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-08:38:50,342 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-08:38:50,344 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_mask".
201113-08:38:50,349 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate/sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_mask/sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-08:38:50,795 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-08:38:50,796 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/unifize".
201113-08:38:50,803 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/unifize/sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-08:38:51,46 nipype.interface INFO:
stderr 2020-11-13T08:38:51.046866:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:39:47,359 nipype.interface INFO:
stderr 2020-11-13T08:39:47.359406: + Pre-processing: IAV..UW[s3568]Im
201113-08:39:47,369 nipype.interface INFO:
stderr 2020-11-13T08:39:47.369568:++ Output dataset ./uni.nii.gz
201113-08:39:47,369 nipype.interface INFO:
stderr 2020-11-13T08:39:47.369782:++ ===== Elapsed = 56.3 sec
201113-08:39:47,582 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-08:39:47,584 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass".
201113-08:39:47,589 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni.nii.gz
201113-08:39:47,844 nipype.interface INFO:
stderr 2020-11-13T08:39:47.844827:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:39:47,845 nipype.interface INFO:
stderr 2020-11-13T08:39:47.845320:++ Authored by: Emperor Zhark
201113-08:39:47,848 nipype.interface INFO:
stderr 2020-11-13T08:39:47.848162:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni.nii.gz
201113-08:39:47,853 nipype.interface INFO:
stderr 2020-11-13T08:39:47.853179:++ Forming automask
201113-08:39:47,855 nipype.interface INFO:
stderr 2020-11-13T08:39:47.855063: + Fixed clip level = 456.640320
201113-08:39:47,859 nipype.interface INFO:
stderr 2020-11-13T08:39:47.859684: + Used gradual clip level = 428.295868 .. 531.908691
201113-08:39:47,859 nipype.interface INFO:
stderr 2020-11-13T08:39:47.859962: + Number voxels above clip level = 18192
201113-08:39:47,860 nipype.interface INFO:
stderr 2020-11-13T08:39:47.860674: + Clustering voxels ...
201113-08:39:47,861 nipype.interface INFO:
stderr 2020-11-13T08:39:47.861554: + Largest cluster has 18192 voxels
201113-08:39:47,862 nipype.interface INFO:
stderr 2020-11-13T08:39:47.862686: + Clustering voxels ...
201113-08:39:47,863 nipype.interface INFO:
stderr 2020-11-13T08:39:47.863813: + Largest cluster has 17800 voxels
201113-08:39:47,867 nipype.interface INFO:
stderr 2020-11-13T08:39:47.867076: + Filled 514 voxels in small holes; now have 18314 voxels
201113-08:39:47,869 nipype.interface INFO:
stderr 2020-11-13T08:39:47.869222: + Filled 6 voxels in large holes; now have 18320 voxels
201113-08:39:47,870 nipype.interface INFO:
stderr 2020-11-13T08:39:47.870279: + Clustering voxels ...
201113-08:39:47,871 nipype.interface INFO:
stderr 2020-11-13T08:39:47.871114: + Largest cluster has 18320 voxels
201113-08:39:47,871 nipype.interface INFO:
stderr 2020-11-13T08:39:47.871337: + Clustering non-brain voxels ...
201113-08:39:47,871 nipype.interface INFO:
stderr 2020-11-13T08:39:47.871476: + Clustering voxels ...
201113-08:39:47,874 nipype.interface INFO:
stderr 2020-11-13T08:39:47.874558: + Largest cluster has 116810 voxels
201113-08:39:47,874 nipype.interface INFO:
stderr 2020-11-13T08:39:47.874876: + Mask now has 18358 voxels
201113-08:39:47,875 nipype.interface INFO:
stderr 2020-11-13T08:39:47.875022:++ Dilating automask
201113-08:39:47,882 nipype.interface INFO:
stderr 2020-11-13T08:39:47.882338: + Clustering voxels ...
201113-08:39:47,884 nipype.interface INFO:
stderr 2020-11-13T08:39:47.884831: + Largest cluster has 112448 voxels
201113-08:39:47,885 nipype.interface INFO:
stderr 2020-11-13T08:39:47.885355:++ 22720 voxels in the mask [out of 135168: 16.81%]
201113-08:39:47,885 nipype.interface INFO:
stderr 2020-11-13T08:39:47.885570:++ first 14 x-planes are zero [from R]
201113-08:39:47,885 nipype.interface INFO:
stderr 2020-11-13T08:39:47.885737:++ last 13 x-planes are zero [from L]
201113-08:39:47,885 nipype.interface INFO:
stderr 2020-11-13T08:39:47.885877:++ first 4 y-planes are zero [from P]
201113-08:39:47,886 nipype.interface INFO:
stderr 2020-11-13T08:39:47.886035:++ last 12 y-planes are zero [from A]
201113-08:39:47,886 nipype.interface INFO:
stderr 2020-11-13T08:39:47.886180:++ first 4 z-planes are zero [from I]
201113-08:39:47,886 nipype.interface INFO:
stderr 2020-11-13T08:39:47.886318:++ last 3 z-planes are zero [from S]
201113-08:39:47,890 nipype.interface INFO:
stderr 2020-11-13T08:39:47.890104:++ Output dataset ./uni_mask.nii.gz
201113-08:39:47,890 nipype.interface INFO:
stderr 2020-11-13T08:39:47.890275:++ applying mask to original data
201113-08:39:47,890 nipype.interface INFO:
stderr 2020-11-13T08:39:47.890924:++ Writing masked data
201113-08:39:47,903 nipype.interface INFO:
stderr 2020-11-13T08:39:47.903841:++ Output dataset ./uni_masked.nii.gz
201113-08:39:47,904 nipype.interface INFO:
stderr 2020-11-13T08:39:47.904182:++ CPU time = 0.000000 sec
201113-08:39:48,90 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-08:39:48,92 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks".
201113-08:39:48,98 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:39:48,537 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-08:39:48,539 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/cal_DVARS".
201113-08:39:48,545 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201113-08:39:49,347 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201113-08:39:49,349 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_extract_brain".
201113-08:39:49,357 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt/sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-08:39:49,604 nipype.interface INFO:
stderr 2020-11-13T08:39:49.604852:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:39:49,605 nipype.interface INFO:
stderr 2020-11-13T08:39:49.605181:++ Authored by: A cast of thousands
201113-08:39:52,980 nipype.interface INFO:
stderr 2020-11-13T08:39:52.979910:++ Output dataset ./sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-08:39:53,191 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-08:39:53,193 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize".
201113-08:39:53,198 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_extract_brain/sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201113-08:39:55,467 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-08:39:55,469 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mask_normalize".
201113-08:39:55,475 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mask_normalize/sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-08:39:56,753 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-08:39:56,754 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean".
201113-08:39:56,761 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean/sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-08:39:57,8 nipype.interface INFO:
stderr 2020-11-13T08:39:57.008138:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:39:57,8 nipype.interface INFO:
stderr 2020-11-13T08:39:57.008494:++ Authored by: KR Hammett & RW Cox
201113-08:39:57,373 nipype.interface INFO:
stderr 2020-11-13T08:39:57.373730:++ Output dataset ./sub-071_ses-2_task-rest_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201113-08:39:57,577 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201113-08:39:57,578 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/norm_motion_params".
201113-08:39:57,586 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-08:39:57,815 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-08:39:57,816 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/qc_motion_0/_scan_rest_run-1/motion_plot".
201113-08:39:57,820 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201113-08:39:58,263 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.qc_motion_0.motion_plot".
201113-08:39:58,264 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/sinker_0_qc___movement_trans_plot".
201113-08:39:58,272 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:39:58,483 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc___movement_trans_plot/_scan_rest_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc/movement_trans_plot/_scan_rest_run-1/motion_trans_plot.png
201113-08:39:58,501 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_trans_plot".
201113-08:39:58,503 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/sinker_0_qc___movement_rot_plot".
201113-08:39:58,511 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:39:58,723 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc___movement_rot_plot/_scan_rest_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc/movement_rot_plot/_scan_rest_run-1/motion_rot_plot.png
201113-08:39:58,741 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_rot_plot".
201113-08:39:58,744 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/calc_motion_parameters".
201113-08:39:58,751 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201113-08:39:58,985 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201113-08:39:58,986 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/sinker_0_motion_params".
201113-08:39:58,993 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:39:59,222 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_motion_params".
201113-08:39:59,224 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/calculate_FD".
201113-08:39:59,228 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201113-08:39:59,463 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201113-08:39:59,465 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/sinker_0_frame_wise_displacement_power".
201113-08:39:59,472 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:39:59,704 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_power".
201113-08:39:59,705 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/calc_power_parameters".
201113-08:39:59,712 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201113-08:39:59,945 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201113-08:39:59,947 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/sinker_0_power_params".
201113-08:39:59,954 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:40:00,185 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_power_params".
201113-08:40:00,187 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/sinker_0_movement_parameters".
201113-08:40:00,193 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:40:00,424 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_movement_parameters".
201113-08:40:00,426 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/func_despiked_0".
201113-08:40:00,432 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-071_ses-2_task-rest_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/func_despiked_0/sub-071_ses-2_task-rest_run-1_bold_calc.nii.gz
201113-08:40:00,684 nipype.interface INFO:
stderr 2020-11-13T08:40:00.684855:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:40:00,685 nipype.interface INFO:
stderr 2020-11-13T08:40:00.685227:++ Authored by: RW Cox
201113-08:40:00,687 nipype.interface INFO:
stderr 2020-11-13T08:40:00.687766:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-08:40:00,687 nipype.interface INFO:
stderr 2020-11-13T08:40:00.687766: such as /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/func_despiked_0/sub-071_ses-2_task-rest_run-1_bold_calc.nii.gz,
201113-08:40:00,688 nipype.interface INFO:
stderr 2020-11-13T08:40:00.687766: or viewing/combining it with volumes of differing obliquity,
201113-08:40:00,688 nipype.interface INFO:
stderr 2020-11-13T08:40:00.687766: you should consider running:
201113-08:40:00,688 nipype.interface INFO:
stderr 2020-11-13T08:40:00.687766: 3dWarp -deoblique
201113-08:40:00,688 nipype.interface INFO:
stderr 2020-11-13T08:40:00.687766: on this and other oblique datasets in the same session.
201113-08:40:00,688 nipype.interface INFO:
stderr 2020-11-13T08:40:00.687766: See 3dWarp -help for details.
201113-08:40:00,688 nipype.interface INFO:
stderr 2020-11-13T08:40:00.688595:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/func_despiked_0/sub-071_ses-2_task-rest_run-1_bold_calc.nii.gz is 30.880371 degrees from plumb.
201113-08:40:00,688 nipype.interface INFO:
stderr 2020-11-13T08:40:00.688796:++ Input dataset is in short format, but output will be in float format
201113-08:40:00,688 nipype.interface INFO:
stderr 2020-11-13T08:40:00.688961:++ ignoring first 0 time points, using last 180
201113-08:40:00,689 nipype.interface INFO:
stderr 2020-11-13T08:40:00.689133:++ using 180 time points => -corder 6
201113-08:40:00,689 nipype.interface INFO:
stderr 2020-11-13T08:40:00.689291:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/func_despiked_0/sub-071_ses-2_task-rest_run-1_bold_calc.nii.gz
201113-08:40:01,305 nipype.interface INFO:
stderr 2020-11-13T08:40:01.305377:++ 21200 voxels in the automask [out of 135168 in dataset]
201113-08:40:01,311 nipype.interface INFO:
stderr 2020-11-13T08:40:01.311723:++ 40079 voxels in the dilated automask [out of 135168 in dataset]
201113-08:40:01,326 nipype.interface INFO:
stderr 2020-11-13T08:40:01.326577:++ Procesing time series with OLD model fit algorithm
201113-08:40:01,326 nipype.interface INFO:
stderr 2020-11-13T08:40:01.326786:++ smash edit thresholds: 3.1 .. 5.0 MADs
201113-08:40:01,326 nipype.interface INFO:
stderr 2020-11-13T08:40:01.326946: + [ 3.457% .. 0.072% of normal distribution]
201113-08:40:01,327 nipype.interface INFO:
stderr 2020-11-13T08:40:01.327143: + [ 8.839% .. 3.125% of Laplace distribution]
201113-08:40:01,327 nipype.interface INFO:
stderr 2020-11-13T08:40:01.327310:++ start OpenMP thread #0
201113-08:40:09,799 nipype.interface INFO:
stderr 2020-11-13T08:40:09.799849:..................
201113-08:40:09,800 nipype.interface INFO:
stderr 2020-11-13T08:40:09.800161:++ Elapsed despike time = 8s 473ms
201113-08:40:09,800 nipype.interface INFO:
stderr 2020-11-13T08:40:09.800308:
201113-08:40:09,801 nipype.interface INFO:
stderr 2020-11-13T08:40:09.801434:++ FINAL: 7214220 data points, 833115 edits [11.548%], 348845 big edits [4.836%]
201113-08:40:13,425 nipype.interface INFO:
stderr 2020-11-13T08:40:13.425726:++ Output dataset ./sub-071_ses-2_task-rest_run-1_bold_calc_despike.nii.gz
201113-08:40:13,627 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_despiked_0".
201113-08:40:13,629 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_rest_run-1/slice_timing".
201113-08:40:13,637 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-08:40:13,638 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_rest_run-1/slice_timing/sub-071_ses-2_task-rest_run-1_bold_calc_despike.nii.gz
201113-08:40:13,851 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-08:40:13,887 nipype.interface INFO:
stderr 2020-11-13T08:40:13.887675:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:40:13,890 nipype.interface INFO:
stderr 2020-11-13T08:40:13.890393:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-08:40:13,890 nipype.interface INFO:
stderr 2020-11-13T08:40:13.890393: such as /outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_rest_run-1/slice_timing/sub-071_ses-2_task-rest_run-1_bold_calc_despike.nii.gz,
201113-08:40:13,890 nipype.interface INFO:
stderr 2020-11-13T08:40:13.890393: or viewing/combining it with volumes of differing obliquity,
201113-08:40:13,890 nipype.interface INFO:
stderr 2020-11-13T08:40:13.890393: you should consider running:
201113-08:40:13,890 nipype.interface INFO:
stderr 2020-11-13T08:40:13.890393: 3dWarp -deoblique
201113-08:40:13,890 nipype.interface INFO:
stderr 2020-11-13T08:40:13.890393: on this and other oblique datasets in the same session.
201113-08:40:13,890 nipype.interface INFO:
stderr 2020-11-13T08:40:13.890393: See 3dWarp -help for details.
201113-08:40:13,891 nipype.interface INFO:
stderr 2020-11-13T08:40:13.891152:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_rest_run-1/slice_timing/sub-071_ses-2_task-rest_run-1_bold_calc_despike.nii.gz is 30.880371 degrees from plumb.
201113-08:40:18,698 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_slice_timing_correction_0.slice_timing".
201113-08:40:18,700 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique".
201113-08:40:18,754 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift.nii.gz
201113-08:40:19,3 nipype.interface INFO:
stderr 2020-11-13T08:40:19.003365:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:40:19,3 nipype.interface INFO:
stderr 2020-11-13T08:40:19.003740:++ Authored by: RW Cox
201113-08:40:19,6 nipype.interface INFO:
stderr 2020-11-13T08:40:19.005976:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift.nii.gz
201113-08:40:19,6 nipype.interface INFO:
stderr 2020-11-13T08:40:19.006588: + deoblique
201113-08:40:19,6 nipype.interface INFO:
stderr 2020-11-13T08:40:19.006782: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_deoblique/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201113-08:40:21,323 nipype.interface INFO:
stderr 2020-11-13T08:40:21.323617:++ 3drefit processed 1 datasets
201113-08:40:21,505 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-08:40:21,507 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient".
201113-08:40:21,514 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift.nii.gz
201113-08:40:24,601 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-08:40:24,603 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI".
201113-08:40:24,609 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-08:40:24,857 nipype.interface INFO:
stderr 2020-11-13T08:40:24.857328:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:40:24,857 nipype.interface INFO:
stderr 2020-11-13T08:40:24.857680:++ Authored by: KR Hammett & RW Cox
201113-08:40:25,586 nipype.interface INFO:
stderr 2020-11-13T08:40:25.586417:++ Output dataset ./sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201113-08:40:25,776 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-08:40:25,777 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_generate_ref".
201113-08:40:25,784 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_RPI/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_generate_ref/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-08:40:26,29 nipype.interface INFO:
stderr 2020-11-13T08:40:26.029574:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:40:26,29 nipype.interface INFO:
stderr 2020-11-13T08:40:26.029912:++ Authored by: RW Cox
201113-08:40:26,36 nipype.interface INFO:
stderr 2020-11-13T08:40:26.036953:++ Coarse del was 10, replaced with 3
201113-08:42:48,81 nipype.interface INFO:
stderr 2020-11-13T08:42:48.081369:++ Max displacement in automask = 3.84 (mm) at sub-brick 98
201113-08:42:48,81 nipype.interface INFO:
stderr 2020-11-13T08:42:48.081871:++ Max delta displ in automask = 2.40 (mm) at sub-brick 89
201113-08:42:54,568 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-08:42:54,569 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion".
201113-08:42:54,576 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201113-08:42:54,838 nipype.interface INFO:
stderr 2020-11-13T08:42:54.838634:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:42:54,838 nipype.interface INFO:
stderr 2020-11-13T08:42:54.838957:++ Authored by: KR Hammett & RW Cox
201113-08:42:55,879 nipype.interface INFO:
stderr 2020-11-13T08:42:55.879066:++ Output dataset ./sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201113-08:42:56,71 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-08:42:56,72 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt".
201113-08:42:56,79 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_reorient/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_get_mean_motion/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-08:43:39,151 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-08:43:39,160 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/sinker_0_motion_correct".
201113-08:43:39,169 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:43:39,400 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_motion_correct".
201113-08:43:39,402 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull".
201113-08:43:39,410 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201113-08:43:39,667 nipype.interface INFO:
stderr 2020-11-13T08:43:39.666887:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:43:39,667 nipype.interface INFO:
stderr 2020-11-13T08:43:39.667409:++ Authored by: KR Hammett & RW Cox
201113-08:43:40,442 nipype.interface INFO:
stderr 2020-11-13T08:43:40.441951:++ Output dataset ./sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201113-08:43:40,636 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-08:43:40,638 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass".
201113-08:43:40,644 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_mean_skull/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-08:43:42,488 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-08:43:42,489 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate".
201113-08:43:42,495 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-08:43:43,52 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-08:43:43,54 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_mask".
201113-08:43:43,61 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_dilate/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_mask/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-08:43:43,504 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-08:43:43,506 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/unifize".
201113-08:43:43,511 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/unifize/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-08:43:43,757 nipype.interface INFO:
stderr 2020-11-13T08:43:43.757612:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:44:40,109 nipype.interface INFO:
stderr 2020-11-13T08:44:40.109861: + Pre-processing: IAV..UW[s3564]Im
201113-08:44:40,120 nipype.interface INFO:
stderr 2020-11-13T08:44:40.120223:++ Output dataset ./uni.nii.gz
201113-08:44:40,120 nipype.interface INFO:
stderr 2020-11-13T08:44:40.120435:++ ===== Elapsed = 56.4 sec
201113-08:44:40,327 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-08:44:40,328 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass".
201113-08:44:40,335 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni.nii.gz
201113-08:44:40,578 nipype.interface INFO:
stderr 2020-11-13T08:44:40.578567:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:44:40,578 nipype.interface INFO:
stderr 2020-11-13T08:44:40.578882:++ Authored by: Emperor Zhark
201113-08:44:40,580 nipype.interface INFO:
stderr 2020-11-13T08:44:40.580881:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni.nii.gz
201113-08:44:40,583 nipype.interface INFO:
stderr 2020-11-13T08:44:40.583935:++ Forming automask
201113-08:44:40,585 nipype.interface INFO:
stderr 2020-11-13T08:44:40.585227: + Fixed clip level = 456.588379
201113-08:44:40,588 nipype.interface INFO:
stderr 2020-11-13T08:44:40.588344: + Used gradual clip level = 428.907898 .. 530.962036
201113-08:44:40,588 nipype.interface INFO:
stderr 2020-11-13T08:44:40.588540: + Number voxels above clip level = 18194
201113-08:44:40,588 nipype.interface INFO:
stderr 2020-11-13T08:44:40.588691: + Clustering voxels ...
201113-08:44:40,589 nipype.interface INFO:
stderr 2020-11-13T08:44:40.589532: + Largest cluster has 18194 voxels
201113-08:44:40,590 nipype.interface INFO:
stderr 2020-11-13T08:44:40.590663: + Clustering voxels ...
201113-08:44:40,591 nipype.interface INFO:
stderr 2020-11-13T08:44:40.591509: + Largest cluster has 17787 voxels
201113-08:44:40,594 nipype.interface INFO:
stderr 2020-11-13T08:44:40.594764: + Filled 519 voxels in small holes; now have 18306 voxels
201113-08:44:40,596 nipype.interface INFO:
stderr 2020-11-13T08:44:40.596908: + Filled 6 voxels in large holes; now have 18312 voxels
201113-08:44:40,598 nipype.interface INFO:
stderr 2020-11-13T08:44:40.598203: + Clustering voxels ...
201113-08:44:40,599 nipype.interface INFO:
stderr 2020-11-13T08:44:40.599044: + Largest cluster has 18312 voxels
201113-08:44:40,599 nipype.interface INFO:
stderr 2020-11-13T08:44:40.599267: + Clustering non-brain voxels ...
201113-08:44:40,599 nipype.interface INFO:
stderr 2020-11-13T08:44:40.599410: + Clustering voxels ...
201113-08:44:40,602 nipype.interface INFO:
stderr 2020-11-13T08:44:40.602454: + Largest cluster has 116818 voxels
201113-08:44:40,602 nipype.interface INFO:
stderr 2020-11-13T08:44:40.602773: + Mask now has 18350 voxels
201113-08:44:40,602 nipype.interface INFO:
stderr 2020-11-13T08:44:40.602921:++ Dilating automask
201113-08:44:40,609 nipype.interface INFO:
stderr 2020-11-13T08:44:40.609691: + Clustering voxels ...
201113-08:44:40,612 nipype.interface INFO:
stderr 2020-11-13T08:44:40.612308: + Largest cluster has 112472 voxels
201113-08:44:40,612 nipype.interface INFO:
stderr 2020-11-13T08:44:40.612631:++ 22696 voxels in the mask [out of 135168: 16.79%]
201113-08:44:40,612 nipype.interface INFO:
stderr 2020-11-13T08:44:40.612805:++ first 14 x-planes are zero [from R]
201113-08:44:40,612 nipype.interface INFO:
stderr 2020-11-13T08:44:40.612971:++ last 13 x-planes are zero [from L]
201113-08:44:40,613 nipype.interface INFO:
stderr 2020-11-13T08:44:40.613123:++ first 4 y-planes are zero [from P]
201113-08:44:40,613 nipype.interface INFO:
stderr 2020-11-13T08:44:40.613277:++ last 12 y-planes are zero [from A]
201113-08:44:40,613 nipype.interface INFO:
stderr 2020-11-13T08:44:40.613423:++ first 4 z-planes are zero [from I]
201113-08:44:40,613 nipype.interface INFO:
stderr 2020-11-13T08:44:40.613561:++ last 3 z-planes are zero [from S]
201113-08:44:40,617 nipype.interface INFO:
stderr 2020-11-13T08:44:40.617195:++ Output dataset ./uni_mask.nii.gz
201113-08:44:40,617 nipype.interface INFO:
stderr 2020-11-13T08:44:40.617385:++ applying mask to original data
201113-08:44:40,618 nipype.interface INFO:
stderr 2020-11-13T08:44:40.618063:++ Writing masked data
201113-08:44:40,628 nipype.interface INFO:
stderr 2020-11-13T08:44:40.628586:++ Output dataset ./uni_masked.nii.gz
201113-08:44:40,628 nipype.interface INFO:
stderr 2020-11-13T08:44:40.628901:++ CPU time = 0.000000 sec
201113-08:44:40,812 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-08:44:40,814 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks".
201113-08:44:40,819 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_first_pass/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:44:41,258 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-08:44:41,260 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201113-08:44:41,265 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-08:44:41,492 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201113-08:44:41,493 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201113-08:44:41,499 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:44:41,746 nipype.interface INFO:
stderr 2020-11-13T08:44:41.746559:++ no -frac option: defaulting to -union
201113-08:44:41,746 nipype.interface INFO:
stderr 2020-11-13T08:44:41.746886:++ processing 1 input dataset(s), NN=2...
201113-08:44:41,747 nipype.interface INFO:
stderr 2020-11-13T08:44:41.747052:++ padding all datasets by 0 (for dilations)
201113-08:44:41,751 nipype.interface INFO:
stderr 2020-11-13T08:44:41.751457:++ frac 0 over 1 volumes gives min count 0
201113-08:44:41,751 nipype.interface INFO:
stderr 2020-11-13T08:44:41.751814:++ voxel limits: 0 clipped, 22673 survived, 112495 were zero
201113-08:44:41,752 nipype.interface INFO:
stderr 2020-11-13T08:44:41.751982:++ writing result sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201113-08:44:41,755 nipype.interface INFO:
stderr 2020-11-13T08:44:41.755714:++ Output dataset ./sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201113-08:44:41,942 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201113-08:44:41,944 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/sinker_0_functional_brain_mask".
201113-08:44:41,951 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:44:42,185 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_brain_mask".
201113-08:44:42,187 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/functional_brain_mask_derivative_0".
201113-08:44:42,192 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201113-08:44:42,404 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201113-08:44:42,409 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:44:42,962 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201113-08:44:42,978 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.functional_brain_mask_derivative_0".
201113-08:44:42,980 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_extract_brain".
201113-08:44:42,988 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_motion_correct_mcflirt/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-08:44:43,238 nipype.interface INFO:
stderr 2020-11-13T08:44:43.238196:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:44:43,238 nipype.interface INFO:
stderr 2020-11-13T08:44:43.238542:++ Authored by: A cast of thousands
201113-08:44:46,893 nipype.interface INFO:
stderr 2020-11-13T08:44:46.893909:++ Output dataset ./sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-08:44:47,118 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-08:44:47,119 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize".
201113-08:44:47,124 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/func_extract_brain/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201113-08:44:49,524 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-08:44:49,526 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201113-08:44:49,533 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-08:44:50,550 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201113-08:44:50,551 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201113-08:44:50,557 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_rest_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-08:44:50,801 nipype.interface INFO:
stderr 2020-11-13T08:44:50.800956:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:44:50,801 nipype.interface INFO:
stderr 2020-11-13T08:44:50.801395:++ Authored by: KR Hammett & RW Cox
201113-08:44:51,509 nipype.interface INFO:
stderr 2020-11-13T08:44:51.509874:++ Output dataset ./sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-08:44:51,724 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.functional_mean".
201113-08:44:51,726 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-071_ses-2/qc_snr_0/_scan_rest_run-1/std_dev".
201113-08:44:51,732 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_rest_run-1/combine_masks/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/qc_snr_0/_scan_rest_run-1/std_dev/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-08:44:51,996 nipype.interface INFO:
stderr 2020-11-13T08:44:51.996625:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:44:51,997 nipype.interface INFO:
stderr 2020-11-13T08:44:51.996983:++ Authored by: KR Hammett & RW Cox
201113-08:44:52,640 nipype.interface INFO:
stderr 2020-11-13T08:44:52.640206:++ Output dataset ./sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-08:44:52,832 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.qc_snr_0.std_dev".
201113-08:44:52,834 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/sinker_0_functional_preprocessed".
201113-08:44:52,841 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:44:53,75 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed".
201113-08:44:53,77 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mask_normalize".
201113-08:44:53,82 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_normalize/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mask_normalize/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-08:44:54,382 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-08:44:54,383 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/sinker_0_functional_preprocessed_mask".
201113-08:44:54,390 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:44:54,620 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed_mask".
201113-08:44:54,622 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean".
201113-08:44:54,627 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/func_mean/sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-08:44:54,877 nipype.interface INFO:
stderr 2020-11-13T08:44:54.877112:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:44:54,877 nipype.interface INFO:
stderr 2020-11-13T08:44:54.877446:++ Authored by: KR Hammett & RW Cox
201113-08:44:55,561 nipype.interface INFO:
stderr 2020-11-13T08:44:55.561091:++ Output dataset ./sub-071_ses-2_task-rest_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201113-08:44:55,755 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201113-08:44:55,757 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/sinker_0_mean_functional".
201113-08:44:55,764 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:44:55,995 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_mean_functional".
201113-08:44:55,997 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_rest_run-1/norm_motion_params".
201113-08:44:56,3 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-08:44:56,235 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-08:44:56,236 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/sinker_0_slice_time_corrected".
201113-08:44:56,243 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:44:56,472 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_slice_time_corrected".
201113-08:44:56,474 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_rest_run-1/sinker_0_raw_functional".
201113-08:44:56,483 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:44:56,857 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_raw_functional".
201113-08:44:56,858 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_rest_run-1/check_func_scan".
201113-08:44:56,896 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201113-08:44:57,130 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.check_func_scan".
201113-08:44:57,142 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_depletion_run-2/select_scan_params".
201113-08:44:57,171 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-08:44:57,410 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.select_scan_params".
201113-08:44:57,422 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_depletion_run-2/s3_scan_params".
201113-08:44:57,429 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-08:44:57,664 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.s3_scan_params".
201113-08:44:57,667 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/scan_params_0".
201113-08:44:57,676 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-08:44:57,905 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.scan_params_0".
201113-08:44:57,907 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_depletion_run-2/selectrest".
201113-08:44:57,938 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-08:44:58,176 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.selectrest".
201113-08:44:58,188 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_depletion_run-2/check_for_s3".
201113-08:44:58,193 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-08:44:58,481 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.check_for_s3".
201113-08:44:58,482 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-071_ses-2/edit_func_0/_scan_depletion_run-2/func_get_idx".
201113-08:44:58,488 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-08:44:58,724 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.edit_func_0.func_get_idx".
201113-08:44:58,725 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-071_ses-2/edit_func_0/_scan_depletion_run-2/func_drop_trs".
201113-08:44:58,732 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-071/ses-2/func/sub-071_ses-2_task-depletion_run-2_bold.nii.gz[0..126] -expr "a" -prefix sub-071_ses-2_task-depletion_run-2_bold_calc.nii.gz
201113-08:44:58,985 nipype.interface INFO:
stderr 2020-11-13T08:44:58.985410:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:44:58,985 nipype.interface INFO:
stderr 2020-11-13T08:44:58.985791:++ Authored by: A cast of thousands
201113-08:45:04,477 nipype.interface INFO:
stderr 2020-11-13T08:45:04.477606:++ Output dataset ./sub-071_ses-2_task-depletion_run-2_bold_calc.nii.gz
201113-08:45:04,691 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.edit_func_0.func_drop_trs".
201113-08:45:04,693 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique".
201113-08:45:04,738 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-071_ses-2_task-depletion_run-2_bold_calc.nii.gz
201113-08:45:04,990 nipype.interface INFO:
stderr 2020-11-13T08:45:04.990546:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:45:04,990 nipype.interface INFO:
stderr 2020-11-13T08:45:04.990919:++ Authored by: RW Cox
201113-08:45:04,993 nipype.interface INFO:
stderr 2020-11-13T08:45:04.993513:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-071_ses-2_task-depletion_run-2_bold_calc.nii.gz
201113-08:45:04,994 nipype.interface INFO:
stderr 2020-11-13T08:45:04.994136: + deoblique
201113-08:45:04,994 nipype.interface INFO:
stderr 2020-11-13T08:45:04.994322: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-071_ses-2_task-depletion_run-2_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-071_ses-2_task-depletion_run-2_bold_calc.nii.gz in NIFTI storage)
201113-08:45:08,674 nipype.interface INFO:
stderr 2020-11-13T08:45:08.674672:++ 3drefit processed 1 datasets
201113-08:45:08,889 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-08:45:08,891 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient".
201113-08:45:08,898 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-2_task-depletion_run-2_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient/sub-071_ses-2_task-depletion_run-2_bold_calc.nii.gz
201113-08:45:13,221 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-08:45:13,223 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI".
201113-08:45:13,229 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-depletion_run-2_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI/sub-071_ses-2_task-depletion_run-2_bold_calc_resample.nii.gz
201113-08:45:13,476 nipype.interface INFO:
stderr 2020-11-13T08:45:13.476514:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:45:13,476 nipype.interface INFO:
stderr 2020-11-13T08:45:13.476838:++ Authored by: KR Hammett & RW Cox
201113-08:45:13,938 nipype.interface INFO:
stderr 2020-11-13T08:45:13.938558:++ Output dataset ./sub-071_ses-2_task-depletion_run-2_bold_calc_resample_tstat.nii.gz
201113-08:45:14,126 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-08:45:14,127 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_generate_ref".
201113-08:45:14,133 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-2_task-depletion_run-2_bold_calc_resample.1D -1Dmatrix_save sub-071_ses-2_task-depletion_run-2_bold_calc_resample.aff12.1D -prefix sub-071_ses-2_task-depletion_run-2_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI/sub-071_ses-2_task-depletion_run-2_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-2_task-depletion_run-2_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_generate_ref/sub-071_ses-2_task-depletion_run-2_bold_calc_resample.nii.gz
201113-08:45:14,379 nipype.interface INFO:
stderr 2020-11-13T08:45:14.379674:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:45:14,380 nipype.interface INFO:
stderr 2020-11-13T08:45:14.380005:++ Authored by: RW Cox
201113-08:45:14,390 nipype.interface INFO:
stderr 2020-11-13T08:45:14.390069:++ Coarse del was 10, replaced with 3
201113-08:46:59,929 nipype.interface INFO:
stderr 2020-11-13T08:46:59.929395:++ Max displacement in automask = 1.94 (mm) at sub-brick 126
201113-08:46:59,929 nipype.interface INFO:
stderr 2020-11-13T08:46:59.929941:++ Max delta displ in automask = 1.60 (mm) at sub-brick 105
201113-08:47:03,507 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-08:47:03,509 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion".
201113-08:47:03,514 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-depletion_run-2_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion/sub-071_ses-2_task-depletion_run-2_bold_calc_resample_volreg.nii.gz
201113-08:47:03,759 nipype.interface INFO:
stderr 2020-11-13T08:47:03.759676:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:47:03,760 nipype.interface INFO:
stderr 2020-11-13T08:47:03.760002:++ Authored by: KR Hammett & RW Cox
201113-08:47:04,220 nipype.interface INFO:
stderr 2020-11-13T08:47:04.220415:++ Output dataset ./sub-071_ses-2_task-depletion_run-2_bold_calc_resample_volreg_tstat.nii.gz
201113-08:47:04,409 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-08:47:04,411 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt".
201113-08:47:04,418 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient/sub-071_ses-2_task-depletion_run-2_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt/sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion/sub-071_ses-2_task-depletion_run-2_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-08:47:27,607 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-08:47:27,616 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/calculate_FDJ".
201113-08:47:27,622 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201113-08:47:27,849 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201113-08:47:27,851 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/sinker_0_frame_wise_displacement_jenkinson".
201113-08:47:27,858 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:47:28,88 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201113-08:47:28,89 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/sinker_0_max_displacement".
201113-08:47:28,98 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:47:28,328 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_max_displacement".
201113-08:47:28,330 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/sinker_0_coordinate_transformation".
201113-08:47:28,351 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:47:28,616 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_coordinate_transformation".
201113-08:47:28,626 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull".
201113-08:47:28,635 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull/sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf.nii.gz
201113-08:47:28,883 nipype.interface INFO:
stderr 2020-11-13T08:47:28.883132:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:47:28,883 nipype.interface INFO:
stderr 2020-11-13T08:47:28.883504:++ Authored by: KR Hammett & RW Cox
201113-08:47:29,382 nipype.interface INFO:
stderr 2020-11-13T08:47:29.382315:++ Output dataset ./sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat.nii.gz
201113-08:47:29,570 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-08:47:29,572 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass".
201113-08:47:29,578 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull/sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-08:47:31,415 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-08:47:31,416 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate".
201113-08:47:31,423 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate/sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-08:47:32,132 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-08:47:32,134 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_mask".
201113-08:47:32,140 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate/sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_mask/sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-08:47:32,600 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-08:47:32,601 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/unifize".
201113-08:47:32,608 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/unifize/sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-08:47:32,857 nipype.interface INFO:
stderr 2020-11-13T08:47:32.857097:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:48:50,373 nipype.interface INFO:
stderr 2020-11-13T08:48:50.373241: + Pre-processing: IAV..UW[s4516]Im
201113-08:48:50,388 nipype.interface INFO:
stderr 2020-11-13T08:48:50.388569:++ Output dataset ./uni.nii.gz
201113-08:48:50,388 nipype.interface INFO:
stderr 2020-11-13T08:48:50.388846:++ ===== Elapsed = 77.5 sec
201113-08:48:50,600 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-08:48:50,602 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass".
201113-08:48:50,608 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni.nii.gz
201113-08:48:50,879 nipype.interface INFO:
stderr 2020-11-13T08:48:50.879172:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:48:50,879 nipype.interface INFO:
stderr 2020-11-13T08:48:50.879614:++ Authored by: Emperor Zhark
201113-08:48:50,881 nipype.interface INFO:
stderr 2020-11-13T08:48:50.881492:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni.nii.gz
201113-08:48:50,884 nipype.interface INFO:
stderr 2020-11-13T08:48:50.884826:++ Forming automask
201113-08:48:50,886 nipype.interface INFO:
stderr 2020-11-13T08:48:50.886436: + Fixed clip level = 407.602325
201113-08:48:50,889 nipype.interface INFO:
stderr 2020-11-13T08:48:50.889759: + Used gradual clip level = 364.728394 .. 481.507416
201113-08:48:50,889 nipype.interface INFO:
stderr 2020-11-13T08:48:50.889965: + Number voxels above clip level = 31922
201113-08:48:50,890 nipype.interface INFO:
stderr 2020-11-13T08:48:50.890135: + Clustering voxels ...
201113-08:48:50,891 nipype.interface INFO:
stderr 2020-11-13T08:48:50.891487: + Largest cluster has 31921 voxels
201113-08:48:50,892 nipype.interface INFO:
stderr 2020-11-13T08:48:50.892922: + Clustering voxels ...
201113-08:48:50,894 nipype.interface INFO:
stderr 2020-11-13T08:48:50.894055: + Largest cluster has 31534 voxels
201113-08:48:50,897 nipype.interface INFO:
stderr 2020-11-13T08:48:50.897419: + Filled 848 voxels in small holes; now have 32382 voxels
201113-08:48:50,899 nipype.interface INFO:
stderr 2020-11-13T08:48:50.899625: + Filled 2 voxels in large holes; now have 32384 voxels
201113-08:48:50,901 nipype.interface INFO:
stderr 2020-11-13T08:48:50.901177: + Clustering voxels ...
201113-08:48:50,902 nipype.interface INFO:
stderr 2020-11-13T08:48:50.902295: + Largest cluster has 32379 voxels
201113-08:48:50,902 nipype.interface INFO:
stderr 2020-11-13T08:48:50.902522: + Clustering non-brain voxels ...
201113-08:48:50,902 nipype.interface INFO:
stderr 2020-11-13T08:48:50.902677: + Clustering voxels ...
201113-08:48:50,905 nipype.interface INFO:
stderr 2020-11-13T08:48:50.905488: + Largest cluster has 106770 voxels
201113-08:48:50,905 nipype.interface INFO:
stderr 2020-11-13T08:48:50.905813: + Mask now has 32494 voxels
201113-08:48:50,905 nipype.interface INFO:
stderr 2020-11-13T08:48:50.905961:++ Dilating automask
201113-08:48:50,914 nipype.interface INFO:
stderr 2020-11-13T08:48:50.914373: + Clustering voxels ...
201113-08:48:50,916 nipype.interface INFO:
stderr 2020-11-13T08:48:50.916722: + Largest cluster has 100605 voxels
201113-08:48:50,917 nipype.interface INFO:
stderr 2020-11-13T08:48:50.917060:++ 38659 voxels in the mask [out of 139264: 27.76%]
201113-08:48:50,917 nipype.interface INFO:
stderr 2020-11-13T08:48:50.917229:++ first 10 x-planes are zero [from R]
201113-08:48:50,917 nipype.interface INFO:
stderr 2020-11-13T08:48:50.917388:++ last 10 x-planes are zero [from L]
201113-08:48:50,917 nipype.interface INFO:
stderr 2020-11-13T08:48:50.917521:++ first 0 y-planes are zero [from P]
201113-08:48:50,917 nipype.interface INFO:
stderr 2020-11-13T08:48:50.917669:++ last 9 y-planes are zero [from A]
201113-08:48:50,917 nipype.interface INFO:
stderr 2020-11-13T08:48:50.917801:++ first 0 z-planes are zero [from I]
201113-08:48:50,917 nipype.interface INFO:
stderr 2020-11-13T08:48:50.917932:++ last 0 z-planes are zero [from S]
201113-08:48:50,922 nipype.interface INFO:
stderr 2020-11-13T08:48:50.922458:++ Output dataset ./uni_mask.nii.gz
201113-08:48:50,922 nipype.interface INFO:
stderr 2020-11-13T08:48:50.922675:++ applying mask to original data
201113-08:48:50,923 nipype.interface INFO:
stderr 2020-11-13T08:48:50.923541:++ Writing masked data
201113-08:48:50,938 nipype.interface INFO:
stderr 2020-11-13T08:48:50.938333:++ Output dataset ./uni_masked.nii.gz
201113-08:48:50,938 nipype.interface INFO:
stderr 2020-11-13T08:48:50.938659:++ CPU time = 0.000000 sec
201113-08:48:51,125 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-08:48:51,127 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks".
201113-08:48:51,133 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks/sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:48:51,569 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-08:48:51,571 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/cal_DVARS".
201113-08:48:51,578 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201113-08:48:52,272 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201113-08:48:52,274 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_extract_brain".
201113-08:48:52,283 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt/sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks/sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-08:48:52,533 nipype.interface INFO:
stderr 2020-11-13T08:48:52.533717:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:48:52,534 nipype.interface INFO:
stderr 2020-11-13T08:48:52.534062:++ Authored by: A cast of thousands
201113-08:48:55,287 nipype.interface INFO:
stderr 2020-11-13T08:48:55.287739:++ Output dataset ./sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-08:48:55,470 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-08:48:55,472 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize".
201113-08:48:55,477 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_extract_brain/sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize/sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201113-08:48:57,636 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-08:48:57,637 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mask_normalize".
201113-08:48:57,643 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize/sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mask_normalize/sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-08:48:58,667 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-08:48:58,669 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mean".
201113-08:48:58,674 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mean/sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc.nii.gz
201113-08:48:58,918 nipype.interface INFO:
stderr 2020-11-13T08:48:58.918596:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:48:58,918 nipype.interface INFO:
stderr 2020-11-13T08:48:58.918921:++ Authored by: KR Hammett & RW Cox
201113-08:48:59,215 nipype.interface INFO:
stderr 2020-11-13T08:48:59.215897:++ Output dataset ./sub-071_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz
201113-08:48:59,401 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201113-08:48:59,402 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/norm_motion_params".
201113-08:48:59,408 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-08:48:59,642 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-08:48:59,644 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/qc_motion_0/_scan_depletion_run-2/motion_plot".
201113-08:48:59,648 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201113-08:49:00,88 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.qc_motion_0.motion_plot".
201113-08:49:00,89 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/sinker_0_qc___movement_trans_plot".
201113-08:49:00,96 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:49:00,305 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc___movement_trans_plot/_scan_depletion_run-2/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc/movement_trans_plot/_scan_depletion_run-2/motion_trans_plot.png
201113-08:49:00,322 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_trans_plot".
201113-08:49:00,323 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/sinker_0_qc___movement_rot_plot".
201113-08:49:00,329 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:49:00,542 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc___movement_rot_plot/_scan_depletion_run-2/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc/movement_rot_plot/_scan_depletion_run-2/motion_rot_plot.png
201113-08:49:00,559 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_rot_plot".
201113-08:49:00,561 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/calc_motion_parameters".
201113-08:49:00,568 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201113-08:49:00,803 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201113-08:49:00,805 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/sinker_0_motion_params".
201113-08:49:00,812 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:49:01,42 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_motion_params".
201113-08:49:01,44 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/calculate_FD".
201113-08:49:01,49 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201113-08:49:01,283 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201113-08:49:01,285 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/sinker_0_frame_wise_displacement_power".
201113-08:49:01,293 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:49:01,524 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_power".
201113-08:49:01,526 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/calc_power_parameters".
201113-08:49:01,533 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201113-08:49:01,765 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201113-08:49:01,767 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/sinker_0_power_params".
201113-08:49:01,774 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:49:02,7 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_power_params".
201113-08:49:02,9 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/sinker_0_movement_parameters".
201113-08:49:02,16 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:49:02,247 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_movement_parameters".
201113-08:49:02,248 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/func_despiked_0".
201113-08:49:02,254 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-071_ses-2_task-depletion_run-2_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/func_despiked_0/sub-071_ses-2_task-depletion_run-2_bold_calc.nii.gz
201113-08:49:02,509 nipype.interface INFO:
stderr 2020-11-13T08:49:02.509134:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:49:02,509 nipype.interface INFO:
stderr 2020-11-13T08:49:02.509519:++ Authored by: RW Cox
201113-08:49:02,511 nipype.interface INFO:
stderr 2020-11-13T08:49:02.511627:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-08:49:02,511 nipype.interface INFO:
stderr 2020-11-13T08:49:02.511627: such as /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/func_despiked_0/sub-071_ses-2_task-depletion_run-2_bold_calc.nii.gz,
201113-08:49:02,511 nipype.interface INFO:
stderr 2020-11-13T08:49:02.511627: or viewing/combining it with volumes of differing obliquity,
201113-08:49:02,512 nipype.interface INFO:
stderr 2020-11-13T08:49:02.511627: you should consider running:
201113-08:49:02,512 nipype.interface INFO:
stderr 2020-11-13T08:49:02.511627: 3dWarp -deoblique
201113-08:49:02,512 nipype.interface INFO:
stderr 2020-11-13T08:49:02.511627: on this and other oblique datasets in the same session.
201113-08:49:02,512 nipype.interface INFO:
stderr 2020-11-13T08:49:02.511627: See 3dWarp -help for details.
201113-08:49:02,512 nipype.interface INFO:
stderr 2020-11-13T08:49:02.512444:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/func_despiked_0/sub-071_ses-2_task-depletion_run-2_bold_calc.nii.gz is 30.880365 degrees from plumb.
201113-08:49:02,512 nipype.interface INFO:
stderr 2020-11-13T08:49:02.512626:++ Input dataset is in short format, but output will be in float format
201113-08:49:02,512 nipype.interface INFO:
stderr 2020-11-13T08:49:02.512794:++ ignoring first 0 time points, using last 127
201113-08:49:02,512 nipype.interface INFO:
stderr 2020-11-13T08:49:02.512960:++ using 127 time points => -corder 4
201113-08:49:02,513 nipype.interface INFO:
stderr 2020-11-13T08:49:02.513134:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/func_despiked_0/sub-071_ses-2_task-depletion_run-2_bold_calc.nii.gz
201113-08:49:02,976 nipype.interface INFO:
stderr 2020-11-13T08:49:02.976222:++ 36264 voxels in the automask [out of 139264 in dataset]
201113-08:49:02,981 nipype.interface INFO:
stderr 2020-11-13T08:49:02.981670:++ 60411 voxels in the dilated automask [out of 139264 in dataset]
201113-08:49:02,992 nipype.interface INFO:
stderr 2020-11-13T08:49:02.992761:++ Procesing time series with OLD model fit algorithm
201113-08:49:02,992 nipype.interface INFO:
stderr 2020-11-13T08:49:02.992944:++ smash edit thresholds: 3.1 .. 5.0 MADs
201113-08:49:02,993 nipype.interface INFO:
stderr 2020-11-13T08:49:02.993115: + [ 3.457% .. 0.072% of normal distribution]
201113-08:49:02,993 nipype.interface INFO:
stderr 2020-11-13T08:49:02.993266: + [ 8.839% .. 3.125% of Laplace distribution]
201113-08:49:02,993 nipype.interface INFO:
stderr 2020-11-13T08:49:02.993422:++ start OpenMP thread #0
201113-08:49:08,804 nipype.interface INFO:
stderr 2020-11-13T08:49:08.804121:..........................
201113-08:49:08,804 nipype.interface INFO:
stderr 2020-11-13T08:49:08.804600:++ Elapsed despike time = 5s 811ms
201113-08:49:08,804 nipype.interface INFO:
stderr 2020-11-13T08:49:08.804747:
201113-08:49:08,805 nipype.interface INFO:
stderr 2020-11-13T08:49:08.805565:++ FINAL: 7672197 data points, 552783 edits [7.205%], 90528 big edits [1.180%]
201113-08:49:12,914 nipype.interface INFO:
stderr 2020-11-13T08:49:12.914813:++ Output dataset ./sub-071_ses-2_task-depletion_run-2_bold_calc_despike.nii.gz
201113-08:49:13,140 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_despiked_0".
201113-08:49:13,142 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_depletion_run-2/slice_timing".
201113-08:49:13,150 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-08:49:13,151 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_depletion_run-2/slice_timing/sub-071_ses-2_task-depletion_run-2_bold_calc_despike.nii.gz
201113-08:49:13,363 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-08:49:13,400 nipype.interface INFO:
stderr 2020-11-13T08:49:13.400165:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:49:13,402 nipype.interface INFO:
stderr 2020-11-13T08:49:13.402608:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-08:49:13,402 nipype.interface INFO:
stderr 2020-11-13T08:49:13.402608: such as /outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_depletion_run-2/slice_timing/sub-071_ses-2_task-depletion_run-2_bold_calc_despike.nii.gz,
201113-08:49:13,402 nipype.interface INFO:
stderr 2020-11-13T08:49:13.402608: or viewing/combining it with volumes of differing obliquity,
201113-08:49:13,402 nipype.interface INFO:
stderr 2020-11-13T08:49:13.402608: you should consider running:
201113-08:49:13,403 nipype.interface INFO:
stderr 2020-11-13T08:49:13.402608: 3dWarp -deoblique
201113-08:49:13,403 nipype.interface INFO:
stderr 2020-11-13T08:49:13.402608: on this and other oblique datasets in the same session.
201113-08:49:13,403 nipype.interface INFO:
stderr 2020-11-13T08:49:13.402608: See 3dWarp -help for details.
201113-08:49:13,403 nipype.interface INFO:
stderr 2020-11-13T08:49:13.403331:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_depletion_run-2/slice_timing/sub-071_ses-2_task-depletion_run-2_bold_calc_despike.nii.gz is 30.880365 degrees from plumb.
201113-08:49:17,776 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_slice_timing_correction_0.slice_timing".
201113-08:49:17,778 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique".
201113-08:49:17,834 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz
201113-08:49:18,85 nipype.interface INFO:
stderr 2020-11-13T08:49:18.085790:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:49:18,86 nipype.interface INFO:
stderr 2020-11-13T08:49:18.086184:++ Authored by: RW Cox
201113-08:49:18,88 nipype.interface INFO:
stderr 2020-11-13T08:49:18.088215:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz
201113-08:49:18,88 nipype.interface INFO:
stderr 2020-11-13T08:49:18.088856: + deoblique
201113-08:49:18,89 nipype.interface INFO:
stderr 2020-11-13T08:49:18.089062: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201113-08:49:20,226 nipype.interface INFO:
stderr 2020-11-13T08:49:20.226667:++ 3drefit processed 1 datasets
201113-08:49:20,438 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-08:49:20,439 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient".
201113-08:49:20,446 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz
201113-08:49:23,242 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-08:49:23,244 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI".
201113-08:49:23,249 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.nii.gz
201113-08:49:23,497 nipype.interface INFO:
stderr 2020-11-13T08:49:23.497100:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:49:23,497 nipype.interface INFO:
stderr 2020-11-13T08:49:23.497425:++ Authored by: KR Hammett & RW Cox
201113-08:49:24,83 nipype.interface INFO:
stderr 2020-11-13T08:49:24.083581:++ Output dataset ./sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz
201113-08:49:24,271 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-08:49:24,273 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_generate_ref".
201113-08:49:24,279 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_generate_ref/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.nii.gz
201113-08:49:24,526 nipype.interface INFO:
stderr 2020-11-13T08:49:24.526648:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:49:24,527 nipype.interface INFO:
stderr 2020-11-13T08:49:24.527083:++ Authored by: RW Cox
201113-08:49:24,534 nipype.interface INFO:
stderr 2020-11-13T08:49:24.534597:++ Coarse del was 10, replaced with 3
201113-08:51:10,324 nipype.interface INFO:
stderr 2020-11-13T08:51:10.323910:++ Max displacement in automask = 1.55 (mm) at sub-brick 126
201113-08:51:10,324 nipype.interface INFO:
stderr 2020-11-13T08:51:10.324417:++ Max delta displ in automask = 1.09 (mm) at sub-brick 105
201113-08:51:15,20 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-08:51:15,22 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion".
201113-08:51:15,29 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz
201113-08:51:15,277 nipype.interface INFO:
stderr 2020-11-13T08:51:15.277784:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:51:15,278 nipype.interface INFO:
stderr 2020-11-13T08:51:15.278120:++ Authored by: KR Hammett & RW Cox
201113-08:51:16,49 nipype.interface INFO:
stderr 2020-11-13T08:51:16.049021:++ Output dataset ./sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201113-08:51:16,240 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-08:51:16,242 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt".
201113-08:51:16,249 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-08:51:37,631 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-08:51:37,639 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/sinker_0_motion_correct".
201113-08:51:37,647 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:51:37,877 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_motion_correct".
201113-08:51:37,878 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull".
201113-08:51:37,886 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz
201113-08:51:38,135 nipype.interface INFO:
stderr 2020-11-13T08:51:38.135332:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:51:38,135 nipype.interface INFO:
stderr 2020-11-13T08:51:38.135681:++ Authored by: KR Hammett & RW Cox
201113-08:51:38,754 nipype.interface INFO:
stderr 2020-11-13T08:51:38.754038:++ Output dataset ./sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201113-08:51:38,945 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-08:51:38,946 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass".
201113-08:51:38,953 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-08:51:40,818 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-08:51:40,820 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate".
201113-08:51:40,826 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-08:51:41,506 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-08:51:41,508 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_mask".
201113-08:51:41,513 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_mask/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-08:51:41,966 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-08:51:41,967 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/unifize".
201113-08:51:41,973 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/unifize/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-08:51:42,222 nipype.interface INFO:
stderr 2020-11-13T08:51:42.222822:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:52:59,709 nipype.interface INFO:
stderr 2020-11-13T08:52:59.709576: + Pre-processing: IAV..UW[s4520]Im
201113-08:52:59,723 nipype.interface INFO:
stderr 2020-11-13T08:52:59.723544:++ Output dataset ./uni.nii.gz
201113-08:52:59,723 nipype.interface INFO:
stderr 2020-11-13T08:52:59.723821:++ ===== Elapsed = 77.5 sec
201113-08:52:59,932 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-08:52:59,934 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass".
201113-08:52:59,939 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni.nii.gz
201113-08:53:00,188 nipype.interface INFO:
stderr 2020-11-13T08:53:00.188161:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:53:00,188 nipype.interface INFO:
stderr 2020-11-13T08:53:00.188510:++ Authored by: Emperor Zhark
201113-08:53:00,190 nipype.interface INFO:
stderr 2020-11-13T08:53:00.190527:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni.nii.gz
201113-08:53:00,193 nipype.interface INFO:
stderr 2020-11-13T08:53:00.193939:++ Forming automask
201113-08:53:00,195 nipype.interface INFO:
stderr 2020-11-13T08:53:00.195352: + Fixed clip level = 407.576141
201113-08:53:00,198 nipype.interface INFO:
stderr 2020-11-13T08:53:00.198703: + Used gradual clip level = 365.004761 .. 481.326599
201113-08:53:00,198 nipype.interface INFO:
stderr 2020-11-13T08:53:00.198902: + Number voxels above clip level = 31931
201113-08:53:00,199 nipype.interface INFO:
stderr 2020-11-13T08:53:00.199061: + Clustering voxels ...
201113-08:53:00,200 nipype.interface INFO:
stderr 2020-11-13T08:53:00.200229: + Largest cluster has 31930 voxels
201113-08:53:00,201 nipype.interface INFO:
stderr 2020-11-13T08:53:00.201638: + Clustering voxels ...
201113-08:53:00,202 nipype.interface INFO:
stderr 2020-11-13T08:53:00.202768: + Largest cluster has 31545 voxels
201113-08:53:00,206 nipype.interface INFO:
stderr 2020-11-13T08:53:00.206197: + Filled 852 voxels in small holes; now have 32397 voxels
201113-08:53:00,208 nipype.interface INFO:
stderr 2020-11-13T08:53:00.208418: + Filled 2 voxels in large holes; now have 32399 voxels
201113-08:53:00,209 nipype.interface INFO:
stderr 2020-11-13T08:53:00.209729: + Clustering voxels ...
201113-08:53:00,210 nipype.interface INFO:
stderr 2020-11-13T08:53:00.210854: + Largest cluster has 32394 voxels
201113-08:53:00,211 nipype.interface INFO:
stderr 2020-11-13T08:53:00.211084: + Clustering non-brain voxels ...
201113-08:53:00,211 nipype.interface INFO:
stderr 2020-11-13T08:53:00.211226: + Clustering voxels ...
201113-08:53:00,214 nipype.interface INFO:
stderr 2020-11-13T08:53:00.214037: + Largest cluster has 106755 voxels
201113-08:53:00,214 nipype.interface INFO:
stderr 2020-11-13T08:53:00.214364: + Mask now has 32509 voxels
201113-08:53:00,214 nipype.interface INFO:
stderr 2020-11-13T08:53:00.214514:++ Dilating automask
201113-08:53:00,222 nipype.interface INFO:
stderr 2020-11-13T08:53:00.222241: + Clustering voxels ...
201113-08:53:00,224 nipype.interface INFO:
stderr 2020-11-13T08:53:00.224585: + Largest cluster has 100579 voxels
201113-08:53:00,224 nipype.interface INFO:
stderr 2020-11-13T08:53:00.224913:++ 38685 voxels in the mask [out of 139264: 27.78%]
201113-08:53:00,225 nipype.interface INFO:
stderr 2020-11-13T08:53:00.225119:++ first 10 x-planes are zero [from R]
201113-08:53:00,225 nipype.interface INFO:
stderr 2020-11-13T08:53:00.225295:++ last 10 x-planes are zero [from L]
201113-08:53:00,225 nipype.interface INFO:
stderr 2020-11-13T08:53:00.225459:++ first 0 y-planes are zero [from P]
201113-08:53:00,225 nipype.interface INFO:
stderr 2020-11-13T08:53:00.225605:++ last 9 y-planes are zero [from A]
201113-08:53:00,225 nipype.interface INFO:
stderr 2020-11-13T08:53:00.225736:++ first 0 z-planes are zero [from I]
201113-08:53:00,225 nipype.interface INFO:
stderr 2020-11-13T08:53:00.225866:++ last 0 z-planes are zero [from S]
201113-08:53:00,229 nipype.interface INFO:
stderr 2020-11-13T08:53:00.229860:++ Output dataset ./uni_mask.nii.gz
201113-08:53:00,230 nipype.interface INFO:
stderr 2020-11-13T08:53:00.230226:++ applying mask to original data
201113-08:53:00,231 nipype.interface INFO:
stderr 2020-11-13T08:53:00.231060:++ Writing masked data
201113-08:53:00,246 nipype.interface INFO:
stderr 2020-11-13T08:53:00.246041:++ Output dataset ./uni_masked.nii.gz
201113-08:53:00,246 nipype.interface INFO:
stderr 2020-11-13T08:53:00.246361:++ CPU time = 0.000000 sec
201113-08:53:00,427 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-08:53:00,428 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks".
201113-08:53:00,434 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:53:00,867 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-08:53:00,868 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201113-08:53:00,874 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-08:53:01,102 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201113-08:53:01,104 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201113-08:53:01,110 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:53:01,359 nipype.interface INFO:
stderr 2020-11-13T08:53:01.359330:++ no -frac option: defaulting to -union
201113-08:53:01,359 nipype.interface INFO:
stderr 2020-11-13T08:53:01.359672:++ processing 1 input dataset(s), NN=2...
201113-08:53:01,359 nipype.interface INFO:
stderr 2020-11-13T08:53:01.359835:++ padding all datasets by 0 (for dilations)
201113-08:53:01,364 nipype.interface INFO:
stderr 2020-11-13T08:53:01.364337:++ frac 0 over 1 volumes gives min count 0
201113-08:53:01,364 nipype.interface INFO:
stderr 2020-11-13T08:53:01.364756:++ voxel limits: 0 clipped, 38621 survived, 100643 were zero
201113-08:53:01,364 nipype.interface INFO:
stderr 2020-11-13T08:53:01.364930:++ writing result sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201113-08:53:01,369 nipype.interface INFO:
stderr 2020-11-13T08:53:01.369113:++ Output dataset ./sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201113-08:53:01,556 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201113-08:53:01,557 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/sinker_0_functional_brain_mask".
201113-08:53:01,564 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:53:01,792 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_brain_mask".
201113-08:53:01,794 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/functional_brain_mask_derivative_0".
201113-08:53:01,798 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201113-08:53:02,11 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201113-08:53:02,16 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:53:02,538 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201113-08:53:02,555 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.functional_brain_mask_derivative_0".
201113-08:53:02,556 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_extract_brain".
201113-08:53:02,563 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-08:53:02,809 nipype.interface INFO:
stderr 2020-11-13T08:53:02.809624:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:53:02,809 nipype.interface INFO:
stderr 2020-11-13T08:53:02.809966:++ Authored by: A cast of thousands
201113-08:53:05,882 nipype.interface INFO:
stderr 2020-11-13T08:53:05.882099:++ Output dataset ./sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-08:53:06,69 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-08:53:06,70 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize".
201113-08:53:06,76 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_extract_brain/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201113-08:53:08,364 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-08:53:08,365 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201113-08:53:08,371 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-08:53:09,280 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201113-08:53:09,282 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201113-08:53:09,288 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-08:53:09,538 nipype.interface INFO:
stderr 2020-11-13T08:53:09.538050:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:53:09,538 nipype.interface INFO:
stderr 2020-11-13T08:53:09.538380:++ Authored by: KR Hammett & RW Cox
201113-08:53:10,95 nipype.interface INFO:
stderr 2020-11-13T08:53:10.095767:++ Output dataset ./sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-08:53:10,286 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.functional_mean".
201113-08:53:10,288 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-071_ses-2/qc_snr_0/_scan_depletion_run-2/std_dev".
201113-08:53:10,294 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/qc_snr_0/_scan_depletion_run-2/std_dev/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-08:53:10,540 nipype.interface INFO:
stderr 2020-11-13T08:53:10.540858:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:53:10,541 nipype.interface INFO:
stderr 2020-11-13T08:53:10.541602:++ Authored by: KR Hammett & RW Cox
201113-08:53:11,54 nipype.interface INFO:
stderr 2020-11-13T08:53:11.054812:++ Output dataset ./sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-08:53:11,247 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.qc_snr_0.std_dev".
201113-08:53:11,249 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/sinker_0_functional_preprocessed".
201113-08:53:11,256 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:53:11,484 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed".
201113-08:53:11,486 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mask_normalize".
201113-08:53:11,492 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mask_normalize/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-08:53:12,512 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-08:53:12,514 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/sinker_0_functional_preprocessed_mask".
201113-08:53:12,521 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:53:12,754 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed_mask".
201113-08:53:12,756 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mean".
201113-08:53:12,762 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mean/sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-08:53:13,7 nipype.interface INFO:
stderr 2020-11-13T08:53:13.007704:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:53:13,8 nipype.interface INFO:
stderr 2020-11-13T08:53:13.008240:++ Authored by: KR Hammett & RW Cox
201113-08:53:13,550 nipype.interface INFO:
stderr 2020-11-13T08:53:13.550470:++ Output dataset ./sub-071_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201113-08:53:13,769 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201113-08:53:13,770 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/sinker_0_mean_functional".
201113-08:53:13,778 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:53:14,9 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_mean_functional".
201113-08:53:14,11 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/norm_motion_params".
201113-08:53:14,18 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-08:53:14,252 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-08:53:14,253 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/sinker_0_slice_time_corrected".
201113-08:53:14,261 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:53:14,494 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_slice_time_corrected".
201113-08:53:14,496 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-2/sinker_0_raw_functional".
201113-08:53:14,504 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:53:14,878 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_raw_functional".
201113-08:53:14,879 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_depletion_run-2/check_func_scan".
201113-08:53:14,911 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201113-08:53:15,147 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.check_func_scan".
201113-08:53:15,158 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_depletion_run-1/select_scan_params".
201113-08:53:15,187 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-08:53:15,419 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.select_scan_params".
201113-08:53:15,431 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_depletion_run-1/s3_scan_params".
201113-08:53:15,439 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-08:53:15,673 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.s3_scan_params".
201113-08:53:15,676 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/scan_params_0".
201113-08:53:15,685 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-08:53:15,914 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.scan_params_0".
201113-08:53:15,916 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_depletion_run-1/selectrest".
201113-08:53:15,946 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-08:53:16,176 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.selectrest".
201113-08:53:16,185 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_depletion_run-1/check_for_s3".
201113-08:53:16,190 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-08:53:16,812 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.check_for_s3".
201113-08:53:16,814 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-071_ses-2/edit_func_0/_scan_depletion_run-1/func_get_idx".
201113-08:53:16,820 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-08:53:17,55 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.edit_func_0.func_get_idx".
201113-08:53:17,56 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-071_ses-2/edit_func_0/_scan_depletion_run-1/func_drop_trs".
201113-08:53:17,63 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-071/ses-2/func/sub-071_ses-2_task-depletion_run-1_bold.nii.gz[0..126] -expr "a" -prefix sub-071_ses-2_task-depletion_run-1_bold_calc.nii.gz
201113-08:53:17,324 nipype.interface INFO:
stderr 2020-11-13T08:53:17.324812:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:53:17,325 nipype.interface INFO:
stderr 2020-11-13T08:53:17.325212:++ Authored by: A cast of thousands
201113-08:53:22,747 nipype.interface INFO:
stderr 2020-11-13T08:53:22.747166:++ Output dataset ./sub-071_ses-2_task-depletion_run-1_bold_calc.nii.gz
201113-08:53:22,959 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.edit_func_0.func_drop_trs".
201113-08:53:22,961 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique".
201113-08:53:23,9 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-071_ses-2_task-depletion_run-1_bold_calc.nii.gz
201113-08:53:23,262 nipype.interface INFO:
stderr 2020-11-13T08:53:23.262326:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:53:23,262 nipype.interface INFO:
stderr 2020-11-13T08:53:23.262701:++ Authored by: RW Cox
201113-08:53:23,265 nipype.interface INFO:
stderr 2020-11-13T08:53:23.265468:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-071_ses-2_task-depletion_run-1_bold_calc.nii.gz
201113-08:53:23,266 nipype.interface INFO:
stderr 2020-11-13T08:53:23.266081: + deoblique
201113-08:53:23,266 nipype.interface INFO:
stderr 2020-11-13T08:53:23.266267: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-071_ses-2_task-depletion_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-071_ses-2_task-depletion_run-1_bold_calc.nii.gz in NIFTI storage)
201113-08:53:26,916 nipype.interface INFO:
stderr 2020-11-13T08:53:26.916362:++ 3drefit processed 1 datasets
201113-08:53:27,102 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-08:53:27,103 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_reorient".
201113-08:53:27,110 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-2_task-depletion_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_reorient/sub-071_ses-2_task-depletion_run-1_bold_calc.nii.gz
201113-08:53:31,449 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-08:53:31,451 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_RPI".
201113-08:53:31,457 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-depletion_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_RPI/sub-071_ses-2_task-depletion_run-1_bold_calc_resample.nii.gz
201113-08:53:31,708 nipype.interface INFO:
stderr 2020-11-13T08:53:31.708929:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:53:31,709 nipype.interface INFO:
stderr 2020-11-13T08:53:31.709282:++ Authored by: KR Hammett & RW Cox
201113-08:53:32,170 nipype.interface INFO:
stderr 2020-11-13T08:53:32.170188:++ Output dataset ./sub-071_ses-2_task-depletion_run-1_bold_calc_resample_tstat.nii.gz
201113-08:53:32,361 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-08:53:32,363 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_generate_ref".
201113-08:53:32,371 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-2_task-depletion_run-1_bold_calc_resample.1D -1Dmatrix_save sub-071_ses-2_task-depletion_run-1_bold_calc_resample.aff12.1D -prefix sub-071_ses-2_task-depletion_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_RPI/sub-071_ses-2_task-depletion_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-2_task-depletion_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_generate_ref/sub-071_ses-2_task-depletion_run-1_bold_calc_resample.nii.gz
201113-08:53:32,621 nipype.interface INFO:
stderr 2020-11-13T08:53:32.621478:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:53:32,621 nipype.interface INFO:
stderr 2020-11-13T08:53:32.621819:++ Authored by: RW Cox
201113-08:53:32,632 nipype.interface INFO:
stderr 2020-11-13T08:53:32.632203:++ Coarse del was 10, replaced with 3
201113-08:55:20,93 nipype.interface INFO:
stderr 2020-11-13T08:55:20.093213:++ Max displacement in automask = 7.02 (mm) at sub-brick 104
201113-08:55:20,93 nipype.interface INFO:
stderr 2020-11-13T08:55:20.093694:++ Max delta displ in automask = 5.25 (mm) at sub-brick 104
201113-08:55:23,720 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-08:55:23,722 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_motion".
201113-08:55:23,728 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-depletion_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_motion/sub-071_ses-2_task-depletion_run-1_bold_calc_resample_volreg.nii.gz
201113-08:55:23,977 nipype.interface INFO:
stderr 2020-11-13T08:55:23.977351:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:55:23,977 nipype.interface INFO:
stderr 2020-11-13T08:55:23.977683:++ Authored by: KR Hammett & RW Cox
201113-08:55:24,443 nipype.interface INFO:
stderr 2020-11-13T08:55:24.442921:++ Output dataset ./sub-071_ses-2_task-depletion_run-1_bold_calc_resample_volreg_tstat.nii.gz
201113-08:55:24,633 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-08:55:24,634 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_motion_correct_mcflirt".
201113-08:55:24,641 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_reorient/sub-071_ses-2_task-depletion_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_motion_correct_mcflirt/sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_motion/sub-071_ses-2_task-depletion_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-08:55:47,239 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-08:55:47,249 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/calculate_FDJ".
201113-08:55:47,255 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201113-08:55:47,483 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201113-08:55:47,485 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/sinker_0_frame_wise_displacement_jenkinson".
201113-08:55:47,493 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:55:47,722 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201113-08:55:47,724 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/sinker_0_max_displacement".
201113-08:55:47,733 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:55:47,962 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_max_displacement".
201113-08:55:47,964 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/sinker_0_coordinate_transformation".
201113-08:55:47,984 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:55:48,248 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_coordinate_transformation".
201113-08:55:48,259 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_mean_skull".
201113-08:55:48,266 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_mean_skull/sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf.nii.gz
201113-08:55:48,515 nipype.interface INFO:
stderr 2020-11-13T08:55:48.514966:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:55:48,515 nipype.interface INFO:
stderr 2020-11-13T08:55:48.515451:++ Authored by: KR Hammett & RW Cox
201113-08:55:49,13 nipype.interface INFO:
stderr 2020-11-13T08:55:49.013281:++ Output dataset ./sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat.nii.gz
201113-08:55:49,200 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-08:55:49,202 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass".
201113-08:55:49,208 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_mean_skull/sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-08:55:51,37 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-08:55:51,39 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_dilate".
201113-08:55:51,44 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_dilate/sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-08:55:51,738 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-08:55:51,739 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_mask".
201113-08:55:51,746 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_dilate/sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_mask/sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-08:55:52,191 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-08:55:52,193 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/unifize".
201113-08:55:52,199 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/unifize/sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-08:55:52,454 nipype.interface INFO:
stderr 2020-11-13T08:55:52.454233:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:57:11,40 nipype.interface INFO:
stderr 2020-11-13T08:57:11.040273: + Pre-processing: IAV..UW[s5310]Im
201113-08:57:11,53 nipype.interface INFO:
stderr 2020-11-13T08:57:11.053325:++ Output dataset ./uni.nii.gz
201113-08:57:11,53 nipype.interface INFO:
stderr 2020-11-13T08:57:11.053591:++ ===== Elapsed = 78.6 sec
201113-08:57:11,264 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-08:57:11,266 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass".
201113-08:57:11,271 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass/uni.nii.gz
201113-08:57:11,527 nipype.interface INFO:
stderr 2020-11-13T08:57:11.527221:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:57:11,527 nipype.interface INFO:
stderr 2020-11-13T08:57:11.527603:++ Authored by: Emperor Zhark
201113-08:57:11,529 nipype.interface INFO:
stderr 2020-11-13T08:57:11.529678:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass/uni.nii.gz
201113-08:57:11,533 nipype.interface INFO:
stderr 2020-11-13T08:57:11.533766:++ Forming automask
201113-08:57:11,535 nipype.interface INFO:
stderr 2020-11-13T08:57:11.535181: + Fixed clip level = 413.726257
201113-08:57:11,538 nipype.interface INFO:
stderr 2020-11-13T08:57:11.538550: + Used gradual clip level = 374.585175 .. 487.777252
201113-08:57:11,538 nipype.interface INFO:
stderr 2020-11-13T08:57:11.538763: + Number voxels above clip level = 32006
201113-08:57:11,538 nipype.interface INFO:
stderr 2020-11-13T08:57:11.538922: + Clustering voxels ...
201113-08:57:11,540 nipype.interface INFO:
stderr 2020-11-13T08:57:11.540151: + Largest cluster has 32004 voxels
201113-08:57:11,541 nipype.interface INFO:
stderr 2020-11-13T08:57:11.541534: + Clustering voxels ...
201113-08:57:11,542 nipype.interface INFO:
stderr 2020-11-13T08:57:11.542679: + Largest cluster has 31761 voxels
201113-08:57:11,546 nipype.interface INFO:
stderr 2020-11-13T08:57:11.546040: + Filled 573 voxels in small holes; now have 32334 voxels
201113-08:57:11,550 nipype.interface INFO:
stderr 2020-11-13T08:57:11.550289: + Filled 6 voxels in large holes; now have 32340 voxels
201113-08:57:11,551 nipype.interface INFO:
stderr 2020-11-13T08:57:11.551579: + Clustering voxels ...
201113-08:57:11,552 nipype.interface INFO:
stderr 2020-11-13T08:57:11.552703: + Largest cluster has 32338 voxels
201113-08:57:11,552 nipype.interface INFO:
stderr 2020-11-13T08:57:11.552933: + Clustering non-brain voxels ...
201113-08:57:11,553 nipype.interface INFO:
stderr 2020-11-13T08:57:11.553087: + Clustering voxels ...
201113-08:57:11,555 nipype.interface INFO:
stderr 2020-11-13T08:57:11.555927: + Largest cluster has 106807 voxels
201113-08:57:11,556 nipype.interface INFO:
stderr 2020-11-13T08:57:11.556269: + Mask now has 32457 voxels
201113-08:57:11,556 nipype.interface INFO:
stderr 2020-11-13T08:57:11.556424:++ Dilating automask
201113-08:57:11,563 nipype.interface INFO:
stderr 2020-11-13T08:57:11.563683: + Clustering voxels ...
201113-08:57:11,566 nipype.interface INFO:
stderr 2020-11-13T08:57:11.566058: + Largest cluster has 100688 voxels
201113-08:57:11,566 nipype.interface INFO:
stderr 2020-11-13T08:57:11.566393:++ 38576 voxels in the mask [out of 139264: 27.70%]
201113-08:57:11,566 nipype.interface INFO:
stderr 2020-11-13T08:57:11.566568:++ first 11 x-planes are zero [from R]
201113-08:57:11,566 nipype.interface INFO:
stderr 2020-11-13T08:57:11.566730:++ last 9 x-planes are zero [from L]
201113-08:57:11,566 nipype.interface INFO:
stderr 2020-11-13T08:57:11.566866:++ first 0 y-planes are zero [from P]
201113-08:57:11,567 nipype.interface INFO:
stderr 2020-11-13T08:57:11.567019:++ last 9 y-planes are zero [from A]
201113-08:57:11,567 nipype.interface INFO:
stderr 2020-11-13T08:57:11.567160:++ first 0 z-planes are zero [from I]
201113-08:57:11,567 nipype.interface INFO:
stderr 2020-11-13T08:57:11.567297:++ last 1 z-planes are zero [from S]
201113-08:57:11,572 nipype.interface INFO:
stderr 2020-11-13T08:57:11.572836:++ Output dataset ./uni_mask.nii.gz
201113-08:57:11,573 nipype.interface INFO:
stderr 2020-11-13T08:57:11.573068:++ applying mask to original data
201113-08:57:11,574 nipype.interface INFO:
stderr 2020-11-13T08:57:11.574181:++ Writing masked data
201113-08:57:11,590 nipype.interface INFO:
stderr 2020-11-13T08:57:11.590445:++ Output dataset ./uni_masked.nii.gz
201113-08:57:11,590 nipype.interface INFO:
stderr 2020-11-13T08:57:11.590888:++ CPU time = 0.000000 sec
201113-08:57:11,777 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-08:57:11,779 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/combine_masks".
201113-08:57:11,785 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/combine_masks/sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-08:57:12,220 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-08:57:12,222 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/cal_DVARS".
201113-08:57:12,229 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201113-08:57:12,919 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201113-08:57:12,920 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_extract_brain".
201113-08:57:12,928 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_motion_correct_mcflirt/sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/combine_masks/sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-08:57:13,177 nipype.interface INFO:
stderr 2020-11-13T08:57:13.177346:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:57:13,177 nipype.interface INFO:
stderr 2020-11-13T08:57:13.177695:++ Authored by: A cast of thousands
201113-08:57:15,933 nipype.interface INFO:
stderr 2020-11-13T08:57:15.933025:++ Output dataset ./sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-08:57:16,122 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-08:57:16,124 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_normalize".
201113-08:57:16,129 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_extract_brain/sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_normalize/sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201113-08:57:18,301 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-08:57:18,303 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mask_normalize".
201113-08:57:18,308 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_normalize/sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mask_normalize/sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-08:57:19,343 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-08:57:19,345 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mean".
201113-08:57:19,351 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mean/sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-08:57:19,598 nipype.interface INFO:
stderr 2020-11-13T08:57:19.598342:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:57:19,598 nipype.interface INFO:
stderr 2020-11-13T08:57:19.598686:++ Authored by: KR Hammett & RW Cox
201113-08:57:19,902 nipype.interface INFO:
stderr 2020-11-13T08:57:19.902314:++ Output dataset ./sub-071_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201113-08:57:20,95 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201113-08:57:20,96 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/norm_motion_params".
201113-08:57:20,102 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-08:57:20,334 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-08:57:20,335 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/qc_motion_0/_scan_depletion_run-1/motion_plot".
201113-08:57:20,339 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201113-08:57:20,772 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.qc_motion_0.motion_plot".
201113-08:57:20,774 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/sinker_0_qc___movement_trans_plot".
201113-08:57:20,780 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:57:20,992 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc___movement_trans_plot/_scan_depletion_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc/movement_trans_plot/_scan_depletion_run-1/motion_trans_plot.png
201113-08:57:21,10 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_trans_plot".
201113-08:57:21,12 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/sinker_0_qc___movement_rot_plot".
201113-08:57:21,18 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:57:21,231 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc___movement_rot_plot/_scan_depletion_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc/movement_rot_plot/_scan_depletion_run-1/motion_rot_plot.png
201113-08:57:21,249 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_rot_plot".
201113-08:57:21,250 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/calc_motion_parameters".
201113-08:57:21,257 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201113-08:57:21,495 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201113-08:57:21,497 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/sinker_0_motion_params".
201113-08:57:21,504 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:57:21,734 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_motion_params".
201113-08:57:21,736 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/calculate_FD".
201113-08:57:21,740 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201113-08:57:21,974 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201113-08:57:21,976 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/sinker_0_frame_wise_displacement_power".
201113-08:57:21,983 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:57:22,213 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_power".
201113-08:57:22,215 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/calc_power_parameters".
201113-08:57:22,221 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201113-08:57:22,457 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201113-08:57:22,459 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/sinker_0_power_params".
201113-08:57:22,466 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:57:22,697 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_power_params".
201113-08:57:22,699 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/sinker_0_movement_parameters".
201113-08:57:22,706 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201113-08:57:22,935 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_movement_parameters".
201113-08:57:22,936 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/func_despiked_0".
201113-08:57:22,942 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-071_ses-2_task-depletion_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/func_despiked_0/sub-071_ses-2_task-depletion_run-1_bold_calc.nii.gz
201113-08:57:23,196 nipype.interface INFO:
stderr 2020-11-13T08:57:23.196756:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:57:23,197 nipype.interface INFO:
stderr 2020-11-13T08:57:23.197155:++ Authored by: RW Cox
201113-08:57:23,199 nipype.interface INFO:
stderr 2020-11-13T08:57:23.199283:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-08:57:23,199 nipype.interface INFO:
stderr 2020-11-13T08:57:23.199283: such as /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/func_despiked_0/sub-071_ses-2_task-depletion_run-1_bold_calc.nii.gz,
201113-08:57:23,199 nipype.interface INFO:
stderr 2020-11-13T08:57:23.199283: or viewing/combining it with volumes of differing obliquity,
201113-08:57:23,199 nipype.interface INFO:
stderr 2020-11-13T08:57:23.199283: you should consider running:
201113-08:57:23,199 nipype.interface INFO:
stderr 2020-11-13T08:57:23.199283: 3dWarp -deoblique
201113-08:57:23,199 nipype.interface INFO:
stderr 2020-11-13T08:57:23.199283: on this and other oblique datasets in the same session.
201113-08:57:23,199 nipype.interface INFO:
stderr 2020-11-13T08:57:23.199283: See 3dWarp -help for details.
201113-08:57:23,200 nipype.interface INFO:
stderr 2020-11-13T08:57:23.200137:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/func_despiked_0/sub-071_ses-2_task-depletion_run-1_bold_calc.nii.gz is 30.880365 degrees from plumb.
201113-08:57:23,200 nipype.interface INFO:
stderr 2020-11-13T08:57:23.200342:++ Input dataset is in short format, but output will be in float format
201113-08:57:23,200 nipype.interface INFO:
stderr 2020-11-13T08:57:23.200508:++ ignoring first 0 time points, using last 127
201113-08:57:23,200 nipype.interface INFO:
stderr 2020-11-13T08:57:23.200671:++ using 127 time points => -corder 4
201113-08:57:23,200 nipype.interface INFO:
stderr 2020-11-13T08:57:23.200832:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/func_despiked_0/sub-071_ses-2_task-depletion_run-1_bold_calc.nii.gz
201113-08:57:23,666 nipype.interface INFO:
stderr 2020-11-13T08:57:23.666825:++ 36293 voxels in the automask [out of 139264 in dataset]
201113-08:57:23,672 nipype.interface INFO:
stderr 2020-11-13T08:57:23.672289:++ 60112 voxels in the dilated automask [out of 139264 in dataset]
201113-08:57:23,683 nipype.interface INFO:
stderr 2020-11-13T08:57:23.683042:++ Procesing time series with OLD model fit algorithm
201113-08:57:23,683 nipype.interface INFO:
stderr 2020-11-13T08:57:23.683229:++ smash edit thresholds: 3.1 .. 5.0 MADs
201113-08:57:23,683 nipype.interface INFO:
stderr 2020-11-13T08:57:23.683391: + [ 3.457% .. 0.072% of normal distribution]
201113-08:57:23,683 nipype.interface INFO:
stderr 2020-11-13T08:57:23.683542: + [ 8.839% .. 3.125% of Laplace distribution]
201113-08:57:23,683 nipype.interface INFO:
stderr 2020-11-13T08:57:23.683697:++ start OpenMP thread #0
201113-08:57:30,313 nipype.interface INFO:
stderr 2020-11-13T08:57:30.313200:.........................
201113-08:57:30,313 nipype.interface INFO:
stderr 2020-11-13T08:57:30.313685:++ Elapsed despike time = 6s 630ms
201113-08:57:30,313 nipype.interface INFO:
stderr 2020-11-13T08:57:30.313834:
201113-08:57:30,314 nipype.interface INFO:
stderr 2020-11-13T08:57:30.314670:++ FINAL: 7634224 data points, 816851 edits [10.700%], 316981 big edits [4.152%]
201113-08:57:34,259 nipype.interface INFO:
stderr 2020-11-13T08:57:34.259665:++ Output dataset ./sub-071_ses-2_task-depletion_run-1_bold_calc_despike.nii.gz
201113-08:57:34,498 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_despiked_0".
201113-08:57:34,499 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_depletion_run-1/slice_timing".
201113-08:57:34,507 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-08:57:34,508 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_depletion_run-1/slice_timing/sub-071_ses-2_task-depletion_run-1_bold_calc_despike.nii.gz
201113-08:57:34,722 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-08:57:34,767 nipype.interface INFO:
stderr 2020-11-13T08:57:34.767472:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:57:34,770 nipype.interface INFO:
stderr 2020-11-13T08:57:34.770899:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-08:57:34,771 nipype.interface INFO:
stderr 2020-11-13T08:57:34.770899: such as /outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_depletion_run-1/slice_timing/sub-071_ses-2_task-depletion_run-1_bold_calc_despike.nii.gz,
201113-08:57:34,771 nipype.interface INFO:
stderr 2020-11-13T08:57:34.770899: or viewing/combining it with volumes of differing obliquity,
201113-08:57:34,771 nipype.interface INFO:
stderr 2020-11-13T08:57:34.770899: you should consider running:
201113-08:57:34,771 nipype.interface INFO:
stderr 2020-11-13T08:57:34.770899: 3dWarp -deoblique
201113-08:57:34,771 nipype.interface INFO:
stderr 2020-11-13T08:57:34.770899: on this and other oblique datasets in the same session.
201113-08:57:34,771 nipype.interface INFO:
stderr 2020-11-13T08:57:34.770899: See 3dWarp -help for details.
201113-08:57:34,771 nipype.interface INFO:
stderr 2020-11-13T08:57:34.771626:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_depletion_run-1/slice_timing/sub-071_ses-2_task-depletion_run-1_bold_calc_despike.nii.gz is 30.880365 degrees from plumb.
201113-08:57:39,96 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_slice_timing_correction_0.slice_timing".
201113-08:57:39,97 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique".
201113-08:57:39,152 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift.nii.gz
201113-08:57:39,410 nipype.interface INFO:
stderr 2020-11-13T08:57:39.410505:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:57:39,410 nipype.interface INFO:
stderr 2020-11-13T08:57:39.410905:++ Authored by: RW Cox
201113-08:57:39,419 nipype.interface INFO:
stderr 2020-11-13T08:57:39.419805:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift.nii.gz
201113-08:57:39,420 nipype.interface INFO:
stderr 2020-11-13T08:57:39.420883: + deoblique
201113-08:57:39,421 nipype.interface INFO:
stderr 2020-11-13T08:57:39.421425: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201113-08:57:41,575 nipype.interface INFO:
stderr 2020-11-13T08:57:41.575298:++ 3drefit processed 1 datasets
201113-08:57:41,788 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-08:57:41,789 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_reorient".
201113-08:57:41,797 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_reorient/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift.nii.gz
201113-08:57:44,593 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-08:57:44,595 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_RPI".
201113-08:57:44,602 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_RPI/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-08:57:44,848 nipype.interface INFO:
stderr 2020-11-13T08:57:44.848646:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:57:44,848 nipype.interface INFO:
stderr 2020-11-13T08:57:44.848971:++ Authored by: KR Hammett & RW Cox
201113-08:57:45,435 nipype.interface INFO:
stderr 2020-11-13T08:57:45.435314:++ Output dataset ./sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201113-08:57:45,626 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-08:57:45,627 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_generate_ref".
201113-08:57:45,634 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_RPI/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_generate_ref/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-08:57:45,879 nipype.interface INFO:
stderr 2020-11-13T08:57:45.879836:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:57:45,880 nipype.interface INFO:
stderr 2020-11-13T08:57:45.880504:++ Authored by: RW Cox
201113-08:57:45,889 nipype.interface INFO:
stderr 2020-11-13T08:57:45.889676:++ Coarse del was 10, replaced with 3
201113-08:59:33,540 nipype.interface INFO:
stderr 2020-11-13T08:59:33.540343:++ Max displacement in automask = 6.43 (mm) at sub-brick 125
201113-08:59:33,540 nipype.interface INFO:
stderr 2020-11-13T08:59:33.540881:++ Max delta displ in automask = 2.23 (mm) at sub-brick 57
201113-08:59:38,416 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-08:59:38,418 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_motion".
201113-08:59:38,423 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_motion/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201113-08:59:38,692 nipype.interface INFO:
stderr 2020-11-13T08:59:38.692567:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-08:59:38,693 nipype.interface INFO:
stderr 2020-11-13T08:59:38.693024:++ Authored by: KR Hammett & RW Cox
201113-08:59:39,472 nipype.interface INFO:
stderr 2020-11-13T08:59:39.472811:++ Output dataset ./sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201113-08:59:39,668 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-08:59:39,669 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_motion_correct_mcflirt".
201113-08:59:39,676 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_reorient/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_motion_correct_mcflirt/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_motion/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:00:00,243 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:00:00,252 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/sinker_0_motion_correct".
201113-09:00:00,261 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:00:00,493 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_motion_correct".
201113-09:00:00,495 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_mean_skull".
201113-09:00:00,502 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_mean_skull/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201113-09:00:00,760 nipype.interface INFO:
stderr 2020-11-13T09:00:00.760445:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:00:00,760 nipype.interface INFO:
stderr 2020-11-13T09:00:00.760960:++ Authored by: KR Hammett & RW Cox
201113-09:00:01,386 nipype.interface INFO:
stderr 2020-11-13T09:00:01.386696:++ Output dataset ./sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201113-09:00:01,579 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:00:01,581 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass".
201113-09:00:01,587 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_mean_skull/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:00:03,472 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:00:03,474 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_dilate".
201113-09:00:03,480 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_dilate/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:00:04,164 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:00:04,165 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_mask".
201113-09:00:04,171 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_dilate/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_mask/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:00:04,628 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:00:04,629 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/unifize".
201113-09:00:04,635 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/unifize/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:00:04,886 nipype.interface INFO:
stderr 2020-11-13T09:00:04.886913:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:01:23,578 nipype.interface INFO:
stderr 2020-11-13T09:01:23.578387: + Pre-processing: IAV..UW[s5297]Im
201113-09:01:23,593 nipype.interface INFO:
stderr 2020-11-13T09:01:23.593060:++ Output dataset ./uni.nii.gz
201113-09:01:23,593 nipype.interface INFO:
stderr 2020-11-13T09:01:23.593297:++ ===== Elapsed = 78.7 sec
201113-09:01:23,808 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:01:23,810 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass".
201113-09:01:23,816 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:01:24,67 nipype.interface INFO:
stderr 2020-11-13T09:01:24.067446:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:01:24,67 nipype.interface INFO:
stderr 2020-11-13T09:01:24.067823:++ Authored by: Emperor Zhark
201113-09:01:24,70 nipype.interface INFO:
stderr 2020-11-13T09:01:24.070518:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:01:24,75 nipype.interface INFO:
stderr 2020-11-13T09:01:24.075067:++ Forming automask
201113-09:01:24,76 nipype.interface INFO:
stderr 2020-11-13T09:01:24.076914: + Fixed clip level = 413.593414
201113-09:01:24,81 nipype.interface INFO:
stderr 2020-11-13T09:01:24.081442: + Used gradual clip level = 375.346771 .. 488.007233
201113-09:01:24,81 nipype.interface INFO:
stderr 2020-11-13T09:01:24.081650: + Number voxels above clip level = 32034
201113-09:01:24,81 nipype.interface INFO:
stderr 2020-11-13T09:01:24.081805: + Clustering voxels ...
201113-09:01:24,82 nipype.interface INFO:
stderr 2020-11-13T09:01:24.082928: + Largest cluster has 32033 voxels
201113-09:01:24,84 nipype.interface INFO:
stderr 2020-11-13T09:01:24.084295: + Clustering voxels ...
201113-09:01:24,85 nipype.interface INFO:
stderr 2020-11-13T09:01:24.085428: + Largest cluster has 31781 voxels
201113-09:01:24,88 nipype.interface INFO:
stderr 2020-11-13T09:01:24.088778: + Filled 578 voxels in small holes; now have 32359 voxels
201113-09:01:24,93 nipype.interface INFO:
stderr 2020-11-13T09:01:24.093018: + Filled 9 voxels in large holes; now have 32368 voxels
201113-09:01:24,94 nipype.interface INFO:
stderr 2020-11-13T09:01:24.094313: + Clustering voxels ...
201113-09:01:24,95 nipype.interface INFO:
stderr 2020-11-13T09:01:24.095441: + Largest cluster has 32366 voxels
201113-09:01:24,95 nipype.interface INFO:
stderr 2020-11-13T09:01:24.095666: + Clustering non-brain voxels ...
201113-09:01:24,95 nipype.interface INFO:
stderr 2020-11-13T09:01:24.095805: + Clustering voxels ...
201113-09:01:24,98 nipype.interface INFO:
stderr 2020-11-13T09:01:24.098621: + Largest cluster has 106779 voxels
201113-09:01:24,98 nipype.interface INFO:
stderr 2020-11-13T09:01:24.098947: + Mask now has 32485 voxels
201113-09:01:24,99 nipype.interface INFO:
stderr 2020-11-13T09:01:24.099106:++ Dilating automask
201113-09:01:24,106 nipype.interface INFO:
stderr 2020-11-13T09:01:24.106301: + Clustering voxels ...
201113-09:01:24,108 nipype.interface INFO:
stderr 2020-11-13T09:01:24.108665: + Largest cluster has 100661 voxels
201113-09:01:24,109 nipype.interface INFO:
stderr 2020-11-13T09:01:24.108998:++ 38603 voxels in the mask [out of 139264: 27.72%]
201113-09:01:24,109 nipype.interface INFO:
stderr 2020-11-13T09:01:24.109176:++ first 11 x-planes are zero [from R]
201113-09:01:24,109 nipype.interface INFO:
stderr 2020-11-13T09:01:24.109335:++ last 9 x-planes are zero [from L]
201113-09:01:24,109 nipype.interface INFO:
stderr 2020-11-13T09:01:24.109469:++ first 0 y-planes are zero [from P]
201113-09:01:24,109 nipype.interface INFO:
stderr 2020-11-13T09:01:24.109617:++ last 9 y-planes are zero [from A]
201113-09:01:24,109 nipype.interface INFO:
stderr 2020-11-13T09:01:24.109748:++ first 0 z-planes are zero [from I]
201113-09:01:24,109 nipype.interface INFO:
stderr 2020-11-13T09:01:24.109881:++ last 1 z-planes are zero [from S]
201113-09:01:24,114 nipype.interface INFO:
stderr 2020-11-13T09:01:24.114550:++ Output dataset ./uni_mask.nii.gz
201113-09:01:24,114 nipype.interface INFO:
stderr 2020-11-13T09:01:24.114723:++ applying mask to original data
201113-09:01:24,115 nipype.interface INFO:
stderr 2020-11-13T09:01:24.115400:++ Writing masked data
201113-09:01:24,131 nipype.interface INFO:
stderr 2020-11-13T09:01:24.131361:++ Output dataset ./uni_masked.nii.gz
201113-09:01:24,131 nipype.interface INFO:
stderr 2020-11-13T09:01:24.131701:++ CPU time = 0.000000 sec
201113-09:01:24,321 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:01:24,323 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/combine_masks".
201113-09:01:24,330 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/combine_masks/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:01:24,773 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:01:24,775 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201113-09:01:24,780 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-09:01:25,12 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201113-09:01:25,14 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201113-09:01:25,21 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:01:25,272 nipype.interface INFO:
stderr 2020-11-13T09:01:25.272922:++ no -frac option: defaulting to -union
201113-09:01:25,273 nipype.interface INFO:
stderr 2020-11-13T09:01:25.273322:++ processing 1 input dataset(s), NN=2...
201113-09:01:25,273 nipype.interface INFO:
stderr 2020-11-13T09:01:25.273514:++ padding all datasets by 0 (for dilations)
201113-09:01:25,278 nipype.interface INFO:
stderr 2020-11-13T09:01:25.278020:++ frac 0 over 1 volumes gives min count 0
201113-09:01:25,278 nipype.interface INFO:
stderr 2020-11-13T09:01:25.278451:++ voxel limits: 0 clipped, 38561 survived, 100703 were zero
201113-09:01:25,278 nipype.interface INFO:
stderr 2020-11-13T09:01:25.278642:++ writing result sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201113-09:01:25,283 nipype.interface INFO:
stderr 2020-11-13T09:01:25.283267:++ Output dataset ./sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201113-09:01:25,470 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201113-09:01:25,471 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/sinker_0_functional_brain_mask".
201113-09:01:25,478 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:01:25,709 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_brain_mask".
201113-09:01:25,710 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/functional_brain_mask_derivative_0".
201113-09:01:25,715 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201113-09:01:25,925 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201113-09:01:25,931 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:01:26,443 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201113-09:01:26,459 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.functional_brain_mask_derivative_0".
201113-09:01:26,461 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_extract_brain".
201113-09:01:26,469 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_motion_correct_mcflirt/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/combine_masks/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:01:26,715 nipype.interface INFO:
stderr 2020-11-13T09:01:26.715569:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:01:26,715 nipype.interface INFO:
stderr 2020-11-13T09:01:26.715898:++ Authored by: A cast of thousands
201113-09:01:29,785 nipype.interface INFO:
stderr 2020-11-13T09:01:29.785118:++ Output dataset ./sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:01:30,2 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:01:30,4 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_normalize".
201113-09:01:30,9 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_extract_brain/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_normalize/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201113-09:01:32,265 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:01:32,266 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201113-09:01:32,273 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_normalize/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:01:33,182 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201113-09:01:33,183 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201113-09:01:33,188 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:01:33,430 nipype.interface INFO:
stderr 2020-11-13T09:01:33.430130:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:01:33,430 nipype.interface INFO:
stderr 2020-11-13T09:01:33.430448:++ Authored by: KR Hammett & RW Cox
201113-09:01:33,987 nipype.interface INFO:
stderr 2020-11-13T09:01:33.987672:++ Output dataset ./sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:01:34,179 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.functional_mean".
201113-09:01:34,181 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-071_ses-2/qc_snr_0/_scan_depletion_run-1/std_dev".
201113-09:01:34,188 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/combine_masks/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/qc_snr_0/_scan_depletion_run-1/std_dev/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:01:34,434 nipype.interface INFO:
stderr 2020-11-13T09:01:34.434403:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:01:34,434 nipype.interface INFO:
stderr 2020-11-13T09:01:34.434860:++ Authored by: KR Hammett & RW Cox
201113-09:01:34,945 nipype.interface INFO:
stderr 2020-11-13T09:01:34.945330:++ Output dataset ./sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:01:35,162 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.qc_snr_0.std_dev".
201113-09:01:35,163 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/sinker_0_functional_preprocessed".
201113-09:01:35,170 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:01:35,400 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed".
201113-09:01:35,402 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mask_normalize".
201113-09:01:35,407 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_normalize/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mask_normalize/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:01:36,416 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:01:36,417 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/sinker_0_functional_preprocessed_mask".
201113-09:01:36,425 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:01:36,653 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed_mask".
201113-09:01:36,655 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mean".
201113-09:01:36,661 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mean/sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:01:36,916 nipype.interface INFO:
stderr 2020-11-13T09:01:36.916463:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:01:36,916 nipype.interface INFO:
stderr 2020-11-13T09:01:36.916899:++ Authored by: KR Hammett & RW Cox
201113-09:01:37,455 nipype.interface INFO:
stderr 2020-11-13T09:01:37.455433:++ Output dataset ./sub-071_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201113-09:01:37,664 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:01:37,665 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/sinker_0_mean_functional".
201113-09:01:37,672 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:01:37,903 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_mean_functional".
201113-09:01:37,905 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/norm_motion_params".
201113-09:01:37,911 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:01:38,144 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:01:38,145 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/sinker_0_slice_time_corrected".
201113-09:01:38,152 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:01:38,383 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_slice_time_corrected".
201113-09:01:38,385 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_depletion_run-1/sinker_0_raw_functional".
201113-09:01:38,393 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:01:38,759 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_raw_functional".
201113-09:01:38,761 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_depletion_run-1/check_func_scan".
201113-09:01:38,796 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201113-09:01:39,27 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.check_func_scan".
201113-09:01:39,38 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_conditioning_run-1/select_scan_params".
201113-09:01:39,68 nipype.workflow INFO:
[Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:01:39,306 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.select_scan_params".
201113-09:01:39,317 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_conditioning_run-1/s3_scan_params".
201113-09:01:39,325 nipype.workflow INFO:
[Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201113-09:01:39,556 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.s3_scan_params".
201113-09:01:39,559 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/scan_params_0".
201113-09:01:39,569 nipype.workflow INFO:
[Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201113-09:01:39,802 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.scan_params_0".
201113-09:01:39,804 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_conditioning_run-1/selectrest".
201113-09:01:39,838 nipype.workflow INFO:
[Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201113-09:01:40,74 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.selectrest".
201113-09:01:40,83 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_conditioning_run-1/check_for_s3".
201113-09:01:40,88 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-09:01:40,377 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.check_for_s3".
201113-09:01:40,378 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-071_ses-2/edit_func_0/_scan_conditioning_run-1/func_get_idx".
201113-09:01:40,384 nipype.workflow INFO:
[Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201113-09:01:40,615 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.edit_func_0.func_get_idx".
201113-09:01:40,616 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-071_ses-2/edit_func_0/_scan_conditioning_run-1/func_drop_trs".
201113-09:01:40,622 nipype.workflow INFO:
[Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-071/ses-2/func/sub-071_ses-2_task-conditioning_run-1_bold.nii.gz[0..150] -expr "a" -prefix sub-071_ses-2_task-conditioning_run-1_bold_calc.nii.gz
201113-09:01:40,873 nipype.interface INFO:
stderr 2020-11-13T09:01:40.873634:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:01:40,874 nipype.interface INFO:
stderr 2020-11-13T09:01:40.874009:++ Authored by: A cast of thousands
201113-09:01:47,427 nipype.interface INFO:
stderr 2020-11-13T09:01:47.427381:++ Output dataset ./sub-071_ses-2_task-conditioning_run-1_bold_calc.nii.gz
201113-09:01:47,650 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.edit_func_0.func_drop_trs".
201113-09:01:47,652 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_deoblique".
201113-09:01:47,706 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_deoblique/sub-071_ses-2_task-conditioning_run-1_bold_calc.nii.gz
201113-09:01:47,953 nipype.interface INFO:
stderr 2020-11-13T09:01:47.953508:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:01:47,953 nipype.interface INFO:
stderr 2020-11-13T09:01:47.953861:++ Authored by: RW Cox
201113-09:01:47,956 nipype.interface INFO:
stderr 2020-11-13T09:01:47.956593:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_deoblique/sub-071_ses-2_task-conditioning_run-1_bold_calc.nii.gz
201113-09:01:47,957 nipype.interface INFO:
stderr 2020-11-13T09:01:47.957196: + deoblique
201113-09:01:47,957 nipype.interface INFO:
stderr 2020-11-13T09:01:47.957381: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_deoblique/sub-071_ses-2_task-conditioning_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_deoblique/sub-071_ses-2_task-conditioning_run-1_bold_calc.nii.gz in NIFTI storage)
201113-09:01:52,325 nipype.interface INFO:
stderr 2020-11-13T09:01:52.325586:++ 3drefit processed 1 datasets
201113-09:01:52,542 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:01:52,544 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_reorient".
201113-09:01:52,550 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-2_task-conditioning_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_reorient/sub-071_ses-2_task-conditioning_run-1_bold_calc.nii.gz
201113-09:01:57,608 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:01:57,609 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_get_mean_RPI".
201113-09:01:57,614 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_get_mean_RPI/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample.nii.gz
201113-09:01:57,858 nipype.interface INFO:
stderr 2020-11-13T09:01:57.858210:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:01:57,858 nipype.interface INFO:
stderr 2020-11-13T09:01:57.858529:++ Authored by: KR Hammett & RW Cox
201113-09:01:58,390 nipype.interface INFO:
stderr 2020-11-13T09:01:58.390667:++ Output dataset ./sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_tstat.nii.gz
201113-09:01:58,580 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:01:58,582 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_generate_ref".
201113-09:01:58,589 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-2_task-conditioning_run-1_bold_calc_resample.1D -1Dmatrix_save sub-071_ses-2_task-conditioning_run-1_bold_calc_resample.aff12.1D -prefix sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_get_mean_RPI/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_generate_ref/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample.nii.gz
201113-09:01:58,835 nipype.interface INFO:
stderr 2020-11-13T09:01:58.835881:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:01:58,836 nipype.interface INFO:
stderr 2020-11-13T09:01:58.836218:++ Authored by: RW Cox
201113-09:01:58,846 nipype.interface INFO:
stderr 2020-11-13T09:01:58.846379:++ Coarse del was 10, replaced with 3
201113-09:04:04,644 nipype.interface INFO:
stderr 2020-11-13T09:04:04.644280:++ Max displacement in automask = 1.68 (mm) at sub-brick 149
201113-09:04:04,644 nipype.interface INFO:
stderr 2020-11-13T09:04:04.644763:++ Max delta displ in automask = 1.28 (mm) at sub-brick 144
201113-09:04:08,862 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:04:08,864 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_get_mean_motion".
201113-09:04:08,870 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_get_mean_motion/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_volreg.nii.gz
201113-09:04:09,123 nipype.interface INFO:
stderr 2020-11-13T09:04:09.123679:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:04:09,124 nipype.interface INFO:
stderr 2020-11-13T09:04:09.124004:++ Authored by: KR Hammett & RW Cox
201113-09:04:09,669 nipype.interface INFO:
stderr 2020-11-13T09:04:09.669615:++ Output dataset ./sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_volreg_tstat.nii.gz
201113-09:04:09,860 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:04:09,862 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_motion_correct_mcflirt".
201113-09:04:09,868 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_reorient/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_motion_correct_mcflirt/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_get_mean_motion/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:04:36,871 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:04:36,878 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/calculate_FDJ".
201113-09:04:36,884 nipype.workflow INFO:
[Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201113-09:04:37,111 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201113-09:04:37,113 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/sinker_0_frame_wise_displacement_jenkinson".
201113-09:04:37,119 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:04:37,349 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201113-09:04:37,350 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/sinker_0_max_displacement".
201113-09:04:37,359 nipype.workflow INFO:
[Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:04:37,593 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_max_displacement".
201113-09:04:37,596 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/sinker_0_coordinate_transformation".
201113-09:04:37,623 nipype.workflow INFO:
[Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:04:37,899 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_coordinate_transformation".
201113-09:04:37,911 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/func_mean_skull".
201113-09:04:37,918 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/func_mean_skull/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf.nii.gz
201113-09:04:38,167 nipype.interface INFO:
stderr 2020-11-13T09:04:38.167849:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:04:38,168 nipype.interface INFO:
stderr 2020-11-13T09:04:38.168417:++ Authored by: KR Hammett & RW Cox
201113-09:04:38,750 nipype.interface INFO:
stderr 2020-11-13T09:04:38.750147:++ Output dataset ./sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf_tstat.nii.gz
201113-09:04:38,939 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:04:38,940 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_first_pass".
201113-09:04:38,946 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/func_mean_skull/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_first_pass/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:04:40,809 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:04:40,811 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_first_dilate".
201113-09:04:40,817 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_first_pass/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_first_dilate/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:04:41,518 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:04:41,519 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_first_mask".
201113-09:04:41,525 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_first_pass/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_first_dilate/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_first_mask/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:04:41,968 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:04:41,969 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/unifize".
201113-09:04:41,975 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/unifize/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201113-09:04:42,222 nipype.interface INFO:
stderr 2020-11-13T09:04:42.222915:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:05:59,676 nipype.interface INFO:
stderr 2020-11-13T09:05:59.676112: + Pre-processing: IAV..UW[s4338]Im
201113-09:05:59,692 nipype.interface INFO:
stderr 2020-11-13T09:05:59.692242:++ Output dataset ./uni.nii.gz
201113-09:05:59,692 nipype.interface INFO:
stderr 2020-11-13T09:05:59.692459:++ ===== Elapsed = 77.5 sec
201113-09:05:59,907 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:05:59,908 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_second_pass".
201113-09:05:59,914 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:06:00,184 nipype.interface INFO:
stderr 2020-11-13T09:06:00.184848:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:06:00,185 nipype.interface INFO:
stderr 2020-11-13T09:06:00.185542:++ Authored by: Emperor Zhark
201113-09:06:00,188 nipype.interface INFO:
stderr 2020-11-13T09:06:00.188754:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:06:00,193 nipype.interface INFO:
stderr 2020-11-13T09:06:00.193960:++ Forming automask
201113-09:06:00,195 nipype.interface INFO:
stderr 2020-11-13T09:06:00.195940: + Fixed clip level = 407.119385
201113-09:06:00,200 nipype.interface INFO:
stderr 2020-11-13T09:06:00.200426: + Used gradual clip level = 363.065460 .. 487.493591
201113-09:06:00,200 nipype.interface INFO:
stderr 2020-11-13T09:06:00.200677: + Number voxels above clip level = 31994
201113-09:06:00,200 nipype.interface INFO:
stderr 2020-11-13T09:06:00.200827: + Clustering voxels ...
201113-09:06:00,201 nipype.interface INFO:
stderr 2020-11-13T09:06:00.201956: + Largest cluster has 31991 voxels
201113-09:06:00,203 nipype.interface INFO:
stderr 2020-11-13T09:06:00.203357: + Clustering voxels ...
201113-09:06:00,204 nipype.interface INFO:
stderr 2020-11-13T09:06:00.204489: + Largest cluster has 31624 voxels
201113-09:06:00,207 nipype.interface INFO:
stderr 2020-11-13T09:06:00.207899: + Filled 893 voxels in small holes; now have 32517 voxels
201113-09:06:00,211 nipype.interface INFO:
stderr 2020-11-13T09:06:00.211170: + Filled 6 voxels in large holes; now have 32523 voxels
201113-09:06:00,212 nipype.interface INFO:
stderr 2020-11-13T09:06:00.212484: + Clustering voxels ...
201113-09:06:00,213 nipype.interface INFO:
stderr 2020-11-13T09:06:00.213605: + Largest cluster has 32521 voxels
201113-09:06:00,213 nipype.interface INFO:
stderr 2020-11-13T09:06:00.213829: + Clustering non-brain voxels ...
201113-09:06:00,214 nipype.interface INFO:
stderr 2020-11-13T09:06:00.213984: + Clustering voxels ...
201113-09:06:00,217 nipype.interface INFO:
stderr 2020-11-13T09:06:00.217890: + Largest cluster has 106606 voxels
201113-09:06:00,218 nipype.interface INFO:
stderr 2020-11-13T09:06:00.218450: + Mask now has 32658 voxels
201113-09:06:00,218 nipype.interface INFO:
stderr 2020-11-13T09:06:00.218628:++ Dilating automask
201113-09:06:00,228 nipype.interface INFO:
stderr 2020-11-13T09:06:00.228281: + Clustering voxels ...
201113-09:06:00,230 nipype.interface INFO:
stderr 2020-11-13T09:06:00.230894: + Largest cluster has 100453 voxels
201113-09:06:00,231 nipype.interface INFO:
stderr 2020-11-13T09:06:00.231239:++ 38811 voxels in the mask [out of 139264: 27.87%]
201113-09:06:00,231 nipype.interface INFO:
stderr 2020-11-13T09:06:00.231408:++ first 10 x-planes are zero [from R]
201113-09:06:00,231 nipype.interface INFO:
stderr 2020-11-13T09:06:00.231568:++ last 9 x-planes are zero [from L]
201113-09:06:00,231 nipype.interface INFO:
stderr 2020-11-13T09:06:00.231706:++ first 1 y-planes are zero [from P]
201113-09:06:00,231 nipype.interface INFO:
stderr 2020-11-13T09:06:00.231850:++ last 7 y-planes are zero [from A]
201113-09:06:00,232 nipype.interface INFO:
stderr 2020-11-13T09:06:00.231985:++ first 2 z-planes are zero [from I]
201113-09:06:00,232 nipype.interface INFO:
stderr 2020-11-13T09:06:00.232123:++ last 0 z-planes are zero [from S]
201113-09:06:00,236 nipype.interface INFO:
stderr 2020-11-13T09:06:00.236317:++ Output dataset ./uni_mask.nii.gz
201113-09:06:00,236 nipype.interface INFO:
stderr 2020-11-13T09:06:00.236512:++ applying mask to original data
201113-09:06:00,237 nipype.interface INFO:
stderr 2020-11-13T09:06:00.237206:++ Writing masked data
201113-09:06:00,251 nipype.interface INFO:
stderr 2020-11-13T09:06:00.251660:++ Output dataset ./uni_masked.nii.gz
201113-09:06:00,251 nipype.interface INFO:
stderr 2020-11-13T09:06:00.251915:++ CPU time = 0.000000 sec
201113-09:06:00,444 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:06:00,446 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/combine_masks".
201113-09:06:00,452 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_first_pass/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/combine_masks/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:06:00,896 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:06:00,898 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/cal_DVARS".
201113-09:06:00,904 nipype.workflow INFO:
[Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201113-09:06:01,680 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201113-09:06:01,681 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/func_extract_brain".
201113-09:06:01,689 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_motion_correct_mcflirt/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/combine_masks/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:06:01,935 nipype.interface INFO:
stderr 2020-11-13T09:06:01.935895:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:06:01,936 nipype.interface INFO:
stderr 2020-11-13T09:06:01.936222:++ Authored by: A cast of thousands
201113-09:06:05,202 nipype.interface INFO:
stderr 2020-11-13T09:06:05.202639:++ Output dataset ./sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:06:05,418 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:06:05,419 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_normalize".
201113-09:06:05,427 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/func_extract_brain/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_normalize/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201113-09:06:07,964 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:06:07,966 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_mask_normalize".
201113-09:06:07,971 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_normalize/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_mask_normalize/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:06:09,141 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:06:09,143 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_mean".
201113-09:06:09,149 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_mean/sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf_calc.nii.gz
201113-09:06:09,397 nipype.interface INFO:
stderr 2020-11-13T09:06:09.397499:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:06:09,397 nipype.interface INFO:
stderr 2020-11-13T09:06:09.397950:++ Authored by: KR Hammett & RW Cox
201113-09:06:09,745 nipype.interface INFO:
stderr 2020-11-13T09:06:09.745025:++ Output dataset ./sub-071_ses-2_task-conditioning_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201113-09:06:09,963 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:06:09,964 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/norm_motion_params".
201113-09:06:09,971 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:06:10,204 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:06:10,206 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/qc_motion_0/_scan_conditioning_run-1/motion_plot".
201113-09:06:10,210 nipype.workflow INFO:
[Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201113-09:06:10,653 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.qc_motion_0.motion_plot".
201113-09:06:10,655 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/sinker_0_qc___movement_trans_plot".
201113-09:06:10,661 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:06:10,873 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc___movement_trans_plot/_scan_conditioning_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc/movement_trans_plot/_scan_conditioning_run-1/motion_trans_plot.png
201113-09:06:10,889 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_trans_plot".
201113-09:06:10,891 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/sinker_0_qc___movement_rot_plot".
201113-09:06:10,898 nipype.workflow INFO:
[Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:06:11,111 nipype.interface INFO:
sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc___movement_rot_plot/_scan_conditioning_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-071_ses-2/qc/movement_rot_plot/_scan_conditioning_run-1/motion_rot_plot.png
201113-09:06:11,129 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_qc___movement_rot_plot".
201113-09:06:11,131 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/calc_motion_parameters".
201113-09:06:11,138 nipype.workflow INFO:
[Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:06:11,373 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201113-09:06:11,375 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/sinker_0_motion_params".
201113-09:06:11,383 nipype.workflow INFO:
[Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:06:11,612 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_motion_params".
201113-09:06:11,613 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/calculate_FD".
201113-09:06:11,618 nipype.workflow INFO:
[Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201113-09:06:11,854 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201113-09:06:11,855 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/sinker_0_frame_wise_displacement_power".
201113-09:06:11,862 nipype.workflow INFO:
[Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:06:12,93 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_frame_wise_displacement_power".
201113-09:06:12,95 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/calc_power_parameters".
201113-09:06:12,102 nipype.workflow INFO:
[Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201113-09:06:12,337 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201113-09:06:12,339 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/sinker_0_power_params".
201113-09:06:12,347 nipype.workflow INFO:
[Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:06:12,575 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_power_params".
201113-09:06:12,577 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/sinker_0_movement_parameters".
201113-09:06:12,584 nipype.workflow INFO:
[Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:06:12,815 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_movement_parameters".
201113-09:06:12,817 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/func_despiked_0".
201113-09:06:12,823 nipype.workflow INFO:
[Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-071_ses-2_task-conditioning_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/func_despiked_0/sub-071_ses-2_task-conditioning_run-1_bold_calc.nii.gz
201113-09:06:13,91 nipype.interface INFO:
stderr 2020-11-13T09:06:13.091333:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:06:13,91 nipype.interface INFO:
stderr 2020-11-13T09:06:13.091765:++ Authored by: RW Cox
201113-09:06:13,93 nipype.interface INFO:
stderr 2020-11-13T09:06:13.093948:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:06:13,94 nipype.interface INFO:
stderr 2020-11-13T09:06:13.093948: such as /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/func_despiked_0/sub-071_ses-2_task-conditioning_run-1_bold_calc.nii.gz,
201113-09:06:13,94 nipype.interface INFO:
stderr 2020-11-13T09:06:13.093948: or viewing/combining it with volumes of differing obliquity,
201113-09:06:13,94 nipype.interface INFO:
stderr 2020-11-13T09:06:13.093948: you should consider running:
201113-09:06:13,94 nipype.interface INFO:
stderr 2020-11-13T09:06:13.093948: 3dWarp -deoblique
201113-09:06:13,94 nipype.interface INFO:
stderr 2020-11-13T09:06:13.093948: on this and other oblique datasets in the same session.
201113-09:06:13,94 nipype.interface INFO:
stderr 2020-11-13T09:06:13.093948: See 3dWarp -help for details.
201113-09:06:13,94 nipype.interface INFO:
stderr 2020-11-13T09:06:13.094791:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/func_despiked_0/sub-071_ses-2_task-conditioning_run-1_bold_calc.nii.gz is 30.880365 degrees from plumb.
201113-09:06:13,95 nipype.interface INFO:
stderr 2020-11-13T09:06:13.094981:++ Input dataset is in short format, but output will be in float format
201113-09:06:13,95 nipype.interface INFO:
stderr 2020-11-13T09:06:13.095163:++ ignoring first 0 time points, using last 151
201113-09:06:13,95 nipype.interface INFO:
stderr 2020-11-13T09:06:13.095334:++ using 151 time points => -corder 5
201113-09:06:13,95 nipype.interface INFO:
stderr 2020-11-13T09:06:13.095497:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/func_despiked_0/sub-071_ses-2_task-conditioning_run-1_bold_calc.nii.gz
201113-09:06:13,645 nipype.interface INFO:
stderr 2020-11-13T09:06:13.645865:++ 36264 voxels in the automask [out of 139264 in dataset]
201113-09:06:13,652 nipype.interface INFO:
stderr 2020-11-13T09:06:13.652794:++ 60798 voxels in the dilated automask [out of 139264 in dataset]
201113-09:06:13,666 nipype.interface INFO:
stderr 2020-11-13T09:06:13.666499:++ Procesing time series with OLD model fit algorithm
201113-09:06:13,666 nipype.interface INFO:
stderr 2020-11-13T09:06:13.666692:++ smash edit thresholds: 3.1 .. 5.0 MADs
201113-09:06:13,666 nipype.interface INFO:
stderr 2020-11-13T09:06:13.666850: + [ 3.457% .. 0.072% of normal distribution]
201113-09:06:13,667 nipype.interface INFO:
stderr 2020-11-13T09:06:13.666998: + [ 8.839% .. 3.125% of Laplace distribution]
201113-09:06:13,667 nipype.interface INFO:
stderr 2020-11-13T09:06:13.667163:++ start OpenMP thread #0
201113-09:06:21,653 nipype.interface INFO:
stderr 2020-11-13T09:06:21.653602:..........................
201113-09:06:21,653 nipype.interface INFO:
stderr 2020-11-13T09:06:21.653896:++ Elapsed despike time = 7s 986ms
201113-09:06:21,654 nipype.interface INFO:
stderr 2020-11-13T09:06:21.654047:
201113-09:06:21,655 nipype.interface INFO:
stderr 2020-11-13T09:06:21.655006:++ FINAL: 9180498 data points, 626662 edits [6.826%], 99693 big edits [1.086%]
201113-09:06:26,591 nipype.interface INFO:
stderr 2020-11-13T09:06:26.591641:++ Output dataset ./sub-071_ses-2_task-conditioning_run-1_bold_calc_despike.nii.gz
201113-09:06:26,797 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_despiked_0".
201113-09:06:26,798 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_conditioning_run-1/slice_timing".
201113-09:06:26,806 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:06:26,807 nipype.workflow INFO:
[Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_conditioning_run-1/slice_timing/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike.nii.gz
201113-09:06:27,21 nipype.interface WARNING:
Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201113-09:06:27,55 nipype.interface INFO:
stderr 2020-11-13T09:06:27.055737:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:06:27,58 nipype.interface INFO:
stderr 2020-11-13T09:06:27.058177:[7m*+ WARNING:[0m If you are performing spatial transformations on an oblique dset,
201113-09:06:27,58 nipype.interface INFO:
stderr 2020-11-13T09:06:27.058177: such as /outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_conditioning_run-1/slice_timing/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike.nii.gz,
201113-09:06:27,58 nipype.interface INFO:
stderr 2020-11-13T09:06:27.058177: or viewing/combining it with volumes of differing obliquity,
201113-09:06:27,58 nipype.interface INFO:
stderr 2020-11-13T09:06:27.058177: you should consider running:
201113-09:06:27,58 nipype.interface INFO:
stderr 2020-11-13T09:06:27.058177: 3dWarp -deoblique
201113-09:06:27,58 nipype.interface INFO:
stderr 2020-11-13T09:06:27.058177: on this and other oblique datasets in the same session.
201113-09:06:27,58 nipype.interface INFO:
stderr 2020-11-13T09:06:27.058177: See 3dWarp -help for details.
201113-09:06:27,58 nipype.interface INFO:
stderr 2020-11-13T09:06:27.058864:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-071_ses-2/func_slice_timing_correction_0/_scan_conditioning_run-1/slice_timing/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike.nii.gz is 30.880365 degrees from plumb.
201113-09:06:31,974 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_slice_timing_correction_0.slice_timing".
201113-09:06:31,976 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_deoblique".
201113-09:06:32,41 nipype.workflow INFO:
[Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_deoblique/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift.nii.gz
201113-09:06:32,291 nipype.interface INFO:
stderr 2020-11-13T09:06:32.290966:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:06:32,291 nipype.interface INFO:
stderr 2020-11-13T09:06:32.291339:++ Authored by: RW Cox
201113-09:06:32,293 nipype.interface INFO:
stderr 2020-11-13T09:06:32.293428:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_deoblique/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift.nii.gz
201113-09:06:32,294 nipype.interface INFO:
stderr 2020-11-13T09:06:32.294049: + deoblique
201113-09:06:32,294 nipype.interface INFO:
stderr 2020-11-13T09:06:32.294240: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_deoblique/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_deoblique/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201113-09:06:34,852 nipype.interface INFO:
stderr 2020-11-13T09:06:34.852477:++ 3drefit processed 1 datasets
201113-09:06:35,37 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201113-09:06:35,38 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_reorient".
201113-09:06:35,45 nipype.workflow INFO:
[Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_reorient/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift.nii.gz
201113-09:06:38,308 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201113-09:06:38,310 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_get_mean_RPI".
201113-09:06:38,316 nipype.workflow INFO:
[Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_get_mean_RPI/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-09:06:38,568 nipype.interface INFO:
stderr 2020-11-13T09:06:38.568334:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:06:38,568 nipype.interface INFO:
stderr 2020-11-13T09:06:38.568751:++ Authored by: KR Hammett & RW Cox
201113-09:06:39,263 nipype.interface INFO:
stderr 2020-11-13T09:06:39.263242:++ Output dataset ./sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201113-09:06:39,459 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201113-09:06:39,461 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_generate_ref".
201113-09:06:39,468 nipype.workflow INFO:
[Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_get_mean_RPI/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_generate_ref/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample.nii.gz
201113-09:06:39,715 nipype.interface INFO:
stderr 2020-11-13T09:06:39.715903:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:06:39,716 nipype.interface INFO:
stderr 2020-11-13T09:06:39.716239:++ Authored by: RW Cox
201113-09:06:39,723 nipype.interface INFO:
stderr 2020-11-13T09:06:39.723508:++ Coarse del was 10, replaced with 3
201113-09:08:43,823 nipype.interface INFO:
stderr 2020-11-13T09:08:43.823900:++ Max displacement in automask = 1.10 (mm) at sub-brick 149
201113-09:08:43,824 nipype.interface INFO:
stderr 2020-11-13T09:08:43.824403:++ Max delta displ in automask = 0.66 (mm) at sub-brick 144
201113-09:08:49,314 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201113-09:08:49,316 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_get_mean_motion".
201113-09:08:49,323 nipype.workflow INFO:
[Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_get_mean_motion/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201113-09:08:49,592 nipype.interface INFO:
stderr 2020-11-13T09:08:49.592598:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:08:49,593 nipype.interface INFO:
stderr 2020-11-13T09:08:49.593135:++ Authored by: KR Hammett & RW Cox
201113-09:08:50,512 nipype.interface INFO:
stderr 2020-11-13T09:08:50.512311:++ Output dataset ./sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201113-09:08:50,739 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201113-09:08:50,741 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_motion_correct_mcflirt".
201113-09:08:50,748 nipype.workflow INFO:
[Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_reorient/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_motion_correct_mcflirt/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_get_mean_motion/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201113-09:09:15,399 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201113-09:09:15,409 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/sinker_0_motion_correct".
201113-09:09:15,416 nipype.workflow INFO:
[Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:09:15,641 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_motion_correct".
201113-09:09:15,643 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/func_mean_skull".
201113-09:09:15,650 nipype.workflow INFO:
[Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/func_mean_skull/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201113-09:09:15,896 nipype.interface INFO:
stderr 2020-11-13T09:09:15.896619:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:09:15,896 nipype.interface INFO:
stderr 2020-11-13T09:09:15.896944:++ Authored by: KR Hammett & RW Cox
201113-09:09:16,619 nipype.interface INFO:
stderr 2020-11-13T09:09:16.618982:++ Output dataset ./sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201113-09:09:16,814 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201113-09:09:16,815 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_first_pass".
201113-09:09:16,821 nipype.workflow INFO:
[Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/func_mean_skull/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_first_pass/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201113-09:09:18,694 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201113-09:09:18,696 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_first_dilate".
201113-09:09:18,702 nipype.workflow INFO:
[Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_first_pass/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_first_dilate/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201113-09:09:19,385 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201113-09:09:19,386 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_first_mask".
201113-09:09:19,392 nipype.workflow INFO:
[Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_first_pass/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_first_dilate/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_first_mask/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:09:19,844 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201113-09:09:19,846 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/unifize".
201113-09:09:19,854 nipype.workflow INFO:
[Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/unifize/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201113-09:09:20,107 nipype.interface INFO:
stderr 2020-11-13T09:09:20.106877:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:10:37,775 nipype.interface INFO:
stderr 2020-11-13T09:10:37.775712: + Pre-processing: IAV..UW[s4334]Im
201113-09:10:37,792 nipype.interface INFO:
stderr 2020-11-13T09:10:37.792390:++ Output dataset ./uni.nii.gz
201113-09:10:37,792 nipype.interface INFO:
stderr 2020-11-13T09:10:37.792604:++ ===== Elapsed = 77.7 sec
201113-09:10:38,9 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201113-09:10:38,11 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_second_pass".
201113-09:10:38,18 nipype.workflow INFO:
[Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:10:38,275 nipype.interface INFO:
stderr 2020-11-13T09:10:38.275294:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:10:38,275 nipype.interface INFO:
stderr 2020-11-13T09:10:38.275681:++ Authored by: Emperor Zhark
201113-09:10:38,278 nipype.interface INFO:
stderr 2020-11-13T09:10:38.278575:++ Loading dataset /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_second_pass/uni.nii.gz
201113-09:10:38,283 nipype.interface INFO:
stderr 2020-11-13T09:10:38.283813:++ Forming automask
201113-09:10:38,285 nipype.interface INFO:
stderr 2020-11-13T09:10:38.285567: + Fixed clip level = 406.971710
201113-09:10:38,289 nipype.interface INFO:
stderr 2020-11-13T09:10:38.289876: + Used gradual clip level = 362.990417 .. 486.867065
201113-09:10:38,290 nipype.interface INFO:
stderr 2020-11-13T09:10:38.290341: + Number voxels above clip level = 31991
201113-09:10:38,290 nipype.interface INFO:
stderr 2020-11-13T09:10:38.290532: + Clustering voxels ...
201113-09:10:38,291 nipype.interface INFO:
stderr 2020-11-13T09:10:38.291948: + Largest cluster has 31988 voxels
201113-09:10:38,293 nipype.interface INFO:
stderr 2020-11-13T09:10:38.293360: + Clustering voxels ...
201113-09:10:38,294 nipype.interface INFO:
stderr 2020-11-13T09:10:38.294519: + Largest cluster has 31624 voxels
201113-09:10:38,297 nipype.interface INFO:
stderr 2020-11-13T09:10:38.297885: + Filled 892 voxels in small holes; now have 32516 voxels
201113-09:10:38,301 nipype.interface INFO:
stderr 2020-11-13T09:10:38.301151: + Filled 6 voxels in large holes; now have 32522 voxels
201113-09:10:38,302 nipype.interface INFO:
stderr 2020-11-13T09:10:38.302418: + Clustering voxels ...
201113-09:10:38,303 nipype.interface INFO:
stderr 2020-11-13T09:10:38.303559: + Largest cluster has 32520 voxels
201113-09:10:38,303 nipype.interface INFO:
stderr 2020-11-13T09:10:38.303783: + Clustering non-brain voxels ...
201113-09:10:38,303 nipype.interface INFO:
stderr 2020-11-13T09:10:38.303923: + Clustering voxels ...
201113-09:10:38,306 nipype.interface INFO:
stderr 2020-11-13T09:10:38.306763: + Largest cluster has 106607 voxels
201113-09:10:38,307 nipype.interface INFO:
stderr 2020-11-13T09:10:38.307094: + Mask now has 32657 voxels
201113-09:10:38,307 nipype.interface INFO:
stderr 2020-11-13T09:10:38.307246:++ Dilating automask
201113-09:10:38,315 nipype.interface INFO:
stderr 2020-11-13T09:10:38.315873: + Clustering voxels ...
201113-09:10:38,318 nipype.interface INFO:
stderr 2020-11-13T09:10:38.318204: + Largest cluster has 100453 voxels
201113-09:10:38,318 nipype.interface INFO:
stderr 2020-11-13T09:10:38.318535:++ 38811 voxels in the mask [out of 139264: 27.87%]
201113-09:10:38,318 nipype.interface INFO:
stderr 2020-11-13T09:10:38.318703:++ first 10 x-planes are zero [from R]
201113-09:10:38,318 nipype.interface INFO:
stderr 2020-11-13T09:10:38.318862:++ last 9 x-planes are zero [from L]
201113-09:10:38,319 nipype.interface INFO:
stderr 2020-11-13T09:10:38.318998:++ first 1 y-planes are zero [from P]
201113-09:10:38,319 nipype.interface INFO:
stderr 2020-11-13T09:10:38.319151:++ last 7 y-planes are zero [from A]
201113-09:10:38,319 nipype.interface INFO:
stderr 2020-11-13T09:10:38.319288:++ first 2 z-planes are zero [from I]
201113-09:10:38,319 nipype.interface INFO:
stderr 2020-11-13T09:10:38.319418:++ last 0 z-planes are zero [from S]
201113-09:10:38,323 nipype.interface INFO:
stderr 2020-11-13T09:10:38.323417:++ Output dataset ./uni_mask.nii.gz
201113-09:10:38,323 nipype.interface INFO:
stderr 2020-11-13T09:10:38.323589:++ applying mask to original data
201113-09:10:38,324 nipype.interface INFO:
stderr 2020-11-13T09:10:38.324265:++ Writing masked data
201113-09:10:38,337 nipype.interface INFO:
stderr 2020-11-13T09:10:38.337589:++ Output dataset ./uni_masked.nii.gz
201113-09:10:38,337 nipype.interface INFO:
stderr 2020-11-13T09:10:38.337910:++ CPU time = 0.000000 sec
201113-09:10:38,527 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201113-09:10:38,528 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/combine_masks".
201113-09:10:38,534 nipype.workflow INFO:
[Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_first_pass/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/combine_masks/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:10:38,973 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201113-09:10:38,975 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_conditioning_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201113-09:10:38,980 nipype.workflow INFO:
[Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201113-09:10:39,210 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201113-09:10:39,212 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_conditioning_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201113-09:10:39,219 nipype.workflow INFO:
[Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_conditioning_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:10:39,469 nipype.interface INFO:
stderr 2020-11-13T09:10:39.469550:++ no -frac option: defaulting to -union
201113-09:10:39,469 nipype.interface INFO:
stderr 2020-11-13T09:10:39.469895:++ processing 1 input dataset(s), NN=2...
201113-09:10:39,470 nipype.interface INFO:
stderr 2020-11-13T09:10:39.470077:++ padding all datasets by 0 (for dilations)
201113-09:10:39,474 nipype.interface INFO:
stderr 2020-11-13T09:10:39.474860:++ frac 0 over 1 volumes gives min count 0
201113-09:10:39,475 nipype.interface INFO:
stderr 2020-11-13T09:10:39.475280:++ voxel limits: 0 clipped, 38724 survived, 100540 were zero
201113-09:10:39,475 nipype.interface INFO:
stderr 2020-11-13T09:10:39.475460:++ writing result sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201113-09:10:39,479 nipype.interface INFO:
stderr 2020-11-13T09:10:39.479768:++ Output dataset ./sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201113-09:10:39,668 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201113-09:10:39,669 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/sinker_0_functional_brain_mask".
201113-09:10:39,677 nipype.workflow INFO:
[Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:10:39,909 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_brain_mask".
201113-09:10:39,911 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/functional_brain_mask_derivative_0".
201113-09:10:39,915 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201113-09:10:40,125 nipype.workflow INFO:
[Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201113-09:10:40,130 nipype.workflow INFO:
[Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201113-09:10:40,644 nipype.workflow INFO:
[Node] Finished "functional_brain_mask_derivative".
201113-09:10:40,659 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.functional_brain_mask_derivative_0".
201113-09:10:40,661 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/func_extract_brain".
201113-09:10:40,670 nipype.workflow INFO:
[Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_motion_correct_mcflirt/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/combine_masks/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:10:40,919 nipype.interface INFO:
stderr 2020-11-13T09:10:40.919295:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:10:40,919 nipype.interface INFO:
stderr 2020-11-13T09:10:40.919636:++ Authored by: A cast of thousands
201113-09:10:44,566 nipype.interface INFO:
stderr 2020-11-13T09:10:44.566230:++ Output dataset ./sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:10:44,754 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201113-09:10:44,756 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_normalize".
201113-09:10:44,761 nipype.workflow INFO:
[Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/func_extract_brain/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_normalize/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201113-09:10:47,408 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201113-09:10:47,409 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_conditioning_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201113-09:10:47,415 nipype.workflow INFO:
[Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_conditioning_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_normalize/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:10:48,417 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201113-09:10:48,419 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_conditioning_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201113-09:10:48,424 nipype.workflow INFO:
[Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/nuisance_regressor_0_0/_scan_conditioning_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:10:48,668 nipype.interface INFO:
stderr 2020-11-13T09:10:48.668850:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:10:48,669 nipype.interface INFO:
stderr 2020-11-13T09:10:48.669211:++ Authored by: KR Hammett & RW Cox
201113-09:10:49,324 nipype.interface INFO:
stderr 2020-11-13T09:10:49.324763:++ Output dataset ./sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:10:49,519 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.nuisance_regressor_0_0.functional_mean".
201113-09:10:49,521 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-071_ses-2/qc_snr_0/_scan_conditioning_run-1/std_dev".
201113-09:10:49,528 nipype.workflow INFO:
[Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_conditioning_run-1/combine_masks/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/qc_snr_0/_scan_conditioning_run-1/std_dev/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201113-09:10:49,784 nipype.interface INFO:
stderr 2020-11-13T09:10:49.784025:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:10:49,785 nipype.interface INFO:
stderr 2020-11-13T09:10:49.784968:++ Authored by: KR Hammett & RW Cox
201113-09:10:50,392 nipype.interface INFO:
stderr 2020-11-13T09:10:50.391933:++ Output dataset ./sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201113-09:10:50,615 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.qc_snr_0.std_dev".
201113-09:10:50,617 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/sinker_0_functional_preprocessed".
201113-09:10:50,625 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:10:50,857 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed".
201113-09:10:50,858 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_mask_normalize".
201113-09:10:50,864 nipype.workflow INFO:
[Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_normalize/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_mask_normalize/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201113-09:10:52,38 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201113-09:10:52,39 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/sinker_0_functional_preprocessed_mask".
201113-09:10:52,46 nipype.workflow INFO:
[Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:10:52,277 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_functional_preprocessed_mask".
201113-09:10:52,278 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_mean".
201113-09:10:52,284 nipype.workflow INFO:
[Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/func_mean/sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201113-09:10:52,532 nipype.interface INFO:
stderr 2020-11-13T09:10:52.532703:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:10:52,533 nipype.interface INFO:
stderr 2020-11-13T09:10:52.533055:++ Authored by: KR Hammett & RW Cox
201113-09:10:53,173 nipype.interface INFO:
stderr 2020-11-13T09:10:53.173686:++ Output dataset ./sub-071_ses-2_task-conditioning_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201113-09:10:53,396 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201113-09:10:53,397 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/sinker_0_mean_functional".
201113-09:10:53,405 nipype.workflow INFO:
[Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:10:53,633 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_mean_functional".
201113-09:10:53,634 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_conditioning_run-1/norm_motion_params".
201113-09:10:53,640 nipype.workflow INFO:
[Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201113-09:10:53,874 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201113-09:10:53,875 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/sinker_0_slice_time_corrected".
201113-09:10:53,883 nipype.workflow INFO:
[Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:10:54,112 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_slice_time_corrected".
201113-09:10:54,114 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-071_ses-2/_scan_conditioning_run-1/sinker_0_raw_functional".
201113-09:10:54,121 nipype.workflow INFO:
[Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201113-09:10:54,494 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.sinker_0_raw_functional".
201113-09:10:54,496 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-071_ses-2/func_gather_0/_scan_conditioning_run-1/check_func_scan".
201113-09:10:54,531 nipype.workflow INFO:
[Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201113-09:10:54,764 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.func_gather_0.check_func_scan".
201113-09:10:54,775 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.roi_dataflow_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-071_ses-2/roi_dataflow_0/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3".
201113-09:10:54,779 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-09:10:55,11 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.roi_dataflow_0.check_for_s3".
201113-09:10:55,13 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.roi_dataflow_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-071_ses-2/roi_dataflow_0/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3".
201113-09:10:55,17 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-09:10:55,244 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.roi_dataflow_0.check_for_s3".
201113-09:10:55,246 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_tmpl" in "/outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl".
201113-09:10:55,251 nipype.workflow INFO:
[Node] Running "lap_tmpl" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 T_template0_maths.nii.gz Laplacian /ants_template/oasis/T_template0.nii.gz 1.5 1
201113-09:11:04,384 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_tmpl".
201113-09:11:04,386 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.mrg_tmpl" in "/outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/mrg_tmpl".
201113-09:11:04,392 nipype.workflow INFO:
[Node] Running "mrg_tmpl" ("nipype.interfaces.utility.base.Merge")
201113-09:11:04,620 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.mrg_tmpl".
201113-09:11:04,622 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_tmpl" in "/outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/res_tmpl".
201113-09:11:04,626 nipype.workflow INFO:
[Node] Running "res_tmpl" ("CPAC.utils.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command:
ResampleImageBySpacing 3 /ants_template/oasis/T_template0.nii.gz T_template0_resampled.nii.gz 4 4 4 1
201113-09:11:05,227 nipype.interface INFO:
stdout 2020-11-13T09:11:05.227359: spacing [1, 1, 1] dim 3
201113-09:11:05,227 nipype.interface INFO:
stdout 2020-11-13T09:11:05.227865: spacing2 [4, 4, 4]
201113-09:11:05,228 nipype.interface INFO:
stdout 2020-11-13T09:11:05.228069: smoothing by : 3 dir 0
201113-09:11:05,566 nipype.interface INFO:
stdout 2020-11-13T09:11:05.566930: smoothing by : 3 dir 1
201113-09:11:05,983 nipype.interface INFO:
stdout 2020-11-13T09:11:05.983421: smoothing by : 3 dir 2
201113-09:11:06,763 nipype.interface INFO:
stdout 2020-11-13T09:11:06.763107: out space [4, 4, 4]
201113-09:11:06,763 nipype.interface INFO:
stdout 2020-11-13T09:11:06.763453: output size [54, 64, 72] spc [4, 4, 4]
201113-09:11:07,14 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_tmpl".
201113-09:11:07,16 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.anat_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-071_ses-2/anat_gather_0/check_for_s3".
201113-09:11:07,23 nipype.workflow INFO:
[Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201113-09:11:07,308 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.anat_gather_0.check_for_s3".
201113-09:11:07,309 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.anat_preproc_niworkflows_ants_0.anat_deoblique" in "/outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_deoblique".
201113-09:11:07,429 nipype.workflow INFO:
[Node] Running "anat_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-071_ses-2_T1w.nii.gz
201113-09:11:07,680 nipype.interface INFO:
stderr 2020-11-13T09:11:07.680418:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201113-09:11:07,680 nipype.interface INFO:
stderr 2020-11-13T09:11:07.680791:++ Authored by: RW Cox
201113-09:11:07,681 nipype.interface INFO:
stderr 2020-11-13T09:11:07.681508:** AFNI converts NIFTI_datatype=4 (INT16) in file /outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-071_ses-2_T1w.nii.gz to FLOAT32
201113-09:11:07,681 nipype.interface INFO:
stderr 2020-11-13T09:11:07.681711: Warnings of this type will be muted for this session.
201113-09:11:07,681 nipype.interface INFO:
stderr 2020-11-13T09:11:07.681711: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201113-09:11:07,682 nipype.interface INFO:
stderr 2020-11-13T09:11:07.682617:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-071_ses-2_T1w.nii.gz
201113-09:11:07,683 nipype.interface INFO:
stderr 2020-11-13T09:11:07.683255: + deoblique
201113-09:11:07,683 nipype.interface INFO:
stderr 2020-11-13T09:11:07.683449: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-071_ses-2_T1w.nii.gz (/outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-071_ses-2_T1w.nii.gz in NIFTI storage)
201113-09:11:10,322 nipype.interface INFO:
stderr 2020-11-13T09:11:10.322722:++ 3drefit processed 1 datasets
201113-09:11:10,538 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.anat_preproc_niworkflows_ants_0.anat_deoblique".
201113-09:11:10,539 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.anat_preproc_niworkflows_ants_0.anat_reorient" in "/outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_reorient".
201113-09:11:10,548 nipype.workflow INFO:
[Node] Running "anat_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-071_ses-2_T1w_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_reorient/sub-071_ses-2_T1w.nii.gz
201113-09:11:13,745 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.anat_preproc_niworkflows_ants_0.anat_reorient".
201113-09:11:13,746 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.qc_skullstrip_0.skull_edge" in "/outputs/tmp/resting_preproc_sub-071_ses-2/qc_skullstrip_0/skull_edge".
201113-09:11:13,751 nipype.workflow INFO:
[Node] Running "skull_edge" ("CPAC.utils.interfaces.function.Function")
201113-09:11:17,926 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.qc_skullstrip_0.skull_edge".
201113-09:11:17,927 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.qc_skullstrip_0.montage_skull.resample_o" in "/outputs/tmp/resting_preproc_sub-071_ses-2/qc_skullstrip_0/montage_skull/resample_o".
201113-09:11:17,931 nipype.workflow INFO:
[Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201113-09:11:19,697 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.qc_skullstrip_0.montage_skull.resample_o".
201113-09:11:19,698 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.truncate_images" in "/outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/truncate_images".
201113-09:11:19,705 nipype.workflow INFO:
[Node] Setting-up "_truncate_images0" in "/outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/truncate_images/mapflow/_truncate_images0".
201113-09:11:19,710 nipype.workflow INFO:
[Node] Running "_truncate_images0" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-071_ses-2_T1w_resample_maths.nii.gz TruncateImageIntensity /outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_reorient/sub-071_ses-2_T1w_resample.nii.gz 0.01 0.999 256
201113-09:11:23,627 nipype.workflow INFO:
[Node] Finished "_truncate_images0".
201113-09:11:23,631 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.truncate_images".
201113-09:11:23,631 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.inu_n4" in "/outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4".
201113-09:11:23,639 nipype.workflow INFO:
[Node] Setting-up "_inu_n40" in "/outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40".
201113-09:11:23,644 nipype.workflow INFO:
[Node] Running "_inu_n40" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/truncate_images/mapflow/_truncate_images0/sub-071_ses-2_T1w_resample_maths.nii.gz --convergence [ 50x50x50x50, 1e-07 ] --output sub-071_ses-2_T1w_resample_maths_corrected.nii.gz --shrink-factor 4
201113-09:14:49,399 nipype.workflow INFO:
[Node] Finished "_inu_n40".
201113-09:14:49,404 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.inu_n4".
201113-09:14:49,404 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_target" in "/outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_target".
201113-09:14:49,411 nipype.workflow INFO:
[Node] Running "lap_target" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 sub-071_ses-2_T1w_resample_maths_corrected_maths.nii.gz Laplacian /outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-071_ses-2_T1w_resample_maths_corrected.nii.gz 1.5 1
201113-09:14:57,565 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_target".
201113-09:14:57,567 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.mrg_target" in "/outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/mrg_target".
201113-09:14:57,573 nipype.workflow INFO:
[Node] Running "mrg_target" ("nipype.interfaces.utility.base.Merge")
201113-09:14:57,801 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.mrg_target".
201113-09:14:57,803 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_target" in "/outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/res_target".
201113-09:14:57,809 nipype.workflow INFO:
[Node] Running "res_target" ("CPAC.utils.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command:
ResampleImageBySpacing 3 /outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-071_ses-2_T1w_resample_maths_corrected.nii.gz sub-071_ses-2_T1w_resample_maths_corrected_resampled.nii.gz 4 4 4 1
201113-09:14:58,506 nipype.interface INFO:
stdout 2020-11-13T09:14:58.506266: spacing [1, 1, 1] dim 3
201113-09:14:58,506 nipype.interface INFO:
stdout 2020-11-13T09:14:58.506768: spacing2 [4, 4, 4]
201113-09:14:58,506 nipype.interface INFO:
stdout 2020-11-13T09:14:58.506964: smoothing by : 2.99999 dir 0
201113-09:14:58,772 nipype.interface INFO:
stdout 2020-11-13T09:14:58.772196: smoothing by : 3 dir 1
201113-09:14:59,113 nipype.interface INFO:
stdout 2020-11-13T09:14:59.113412: smoothing by : 3 dir 2
201113-09:14:59,737 nipype.interface INFO:
stdout 2020-11-13T09:14:59.737181: out space [4, 4, 4]
201113-09:14:59,737 nipype.interface INFO:
stdout 2020-11-13T09:14:59.737532: output size [48, 64, 64] spc [4, 4, 4]
201113-09:14:59,984 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_target".
201113-09:14:59,986 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.init_aff" in "/outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/init_aff".
201113-09:14:59,993 nipype.workflow INFO:
[Node] Running "init_aff" ("CPAC.utils.interfaces.ants.AI"), a CommandLine Interface with command:
antsAI -c [10,0.000001,10] -d 3 -x /ants_template/oasis/T_template0_BrainCerebellumRegistrationMask.nii.gz -m Mattes[/outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/res_tmpl/T_template0_resampled.nii.gz,/outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/res_target/sub-071_ses-2_T1w_resample_maths_corrected_resampled.nii.gz,32,Regular,0.250000] -o initialization.mat -p 0 -s [15.000000,0.100000] -t Affine[0.100000] -v 1
201113-09:15:00,435 nipype.interface INFO:
stdout 2020-11-13T09:15:00.434919:Using the Mattes MI metric (number of bins = 32)
201113-09:15:06,336 nipype.workflow INFO:
[Node] Finished "resting_preproc_sub-071_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.init_aff".
201113-09:15:06,337 nipype.workflow INFO:
[Node] Setting-up "resting_preproc_sub-071_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.norm" in "/outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/norm".
201113-09:15:06,352 nipype.workflow INFO:
[Node] Running "norm" ("CPAC.utils.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
antsRegistration --collapse-output-transforms 1 --dimensionality 3 --masks /ants_template/oasis/T_template0_BrainCerebellumRegistrationMask.nii.gz --float 1 --initial-moving-transform [ /outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ anat_to_template, anat_to_template_Warped.nii.gz ] --transform Rigid[ 0.1 ] --metric MI[ /ants_template/oasis/T_template0.nii.gz, /outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-071_ses-2_T1w_resample_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --transform Affine[ 0.1 ] --metric MI[ /ants_template/oasis/T_template0.nii.gz, /outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-071_ses-2_T1w_resample_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /ants_template/oasis/T_template0.nii.gz, /outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-071_ses-2_T1w_resample_maths_corrected.nii.gz, 0.5, 4, None, 1 ] --metric CC[ /outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl/T_template0_maths.nii.gz, /outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_target/sub-071_ses-2_T1w_resample_maths_corrected_maths.nii.gz, 0.5, 4, None, 1 ] --convergence [ 50x10x0, 1e-09, 15 ] --smoothing-sigmas 2.0x1.0x0.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 -v --winsorize-image-intensities [ 0.025, 0.975 ] --write-composite-transform 0
201113-09:15:06,632 nipype.interface INFO:
stdout 2020-11-13T09:15:06.632043:All_Command_lines_OK
201113-09:15:06,632 nipype.interface INFO:
stdout 2020-11-13T09:15:06.632486:Using single precision for computations.
201113-09:15:06,634 nipype.interface INFO:
stdout 2020-11-13T09:15:06.634927:=============================================================================
201113-09:15:06,635 nipype.interface INFO:
stdout 2020-11-13T09:15:06.635106:The composite transform comprises the following transforms (in order):
201113-09:15:06,635 nipype.interface INFO:
stdout 2020-11-13T09:15:06.635254: 1. /outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/init_aff/initialization.mat (type = AffineTransform)
201113-09:15:06,635 nipype.interface INFO:
stdout 2020-11-13T09:15:06.635396:=============================================================================
201113-09:15:06,635 nipype.interface INFO:
stdout 2020-11-13T09:15:06.635551: Reading mask(s).
201113-09:15:06,635 nipype.interface INFO:
stdout 2020-11-13T09:15:06.635686: Registration stage 0
201113-09:15:06,765 nipype.interface INFO:
stdout 2020-11-13T09:15:06.765022: Fixed mask = /ants_template/oasis/T_template0_BrainCerebellumRegistrationMask.nii.gz
201113-09:15:06,765 nipype.interface INFO:
stdout 2020-11-13T09:15:06.765442: number of levels = 4
201113-09:15:06,765 nipype.interface INFO:
stdout 2020-11-13T09:15:06.765623: number of levels = 4
201113-09:15:06,765 nipype.interface INFO:
stdout 2020-11-13T09:15:06.765790: number of levels = 3
201113-09:15:06,765 nipype.interface INFO:
stdout 2020-11-13T09:15:06.765957: fixed image: /ants_template/oasis/T_template0.nii.gz
201113-09:15:06,766 nipype.interface INFO:
stdout 2020-11-13T09:15:06.766107: moving image: /outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-071_ses-2_T1w_resample_maths_corrected.nii.gz
201113-09:15:07,510 nipype.interface INFO:
stdout 2020-11-13T09:15:07.510815: fixed image: /ants_template/oasis/T_template0.nii.gz
201113-09:15:07,511 nipype.interface INFO:
stdout 2020-11-13T09:15:07.511185: moving image: /outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-071_ses-2_T1w_resample_maths_corrected.nii.gz
201113-09:15:08,263 nipype.interface INFO:
stdout 2020-11-13T09:15:08.263594: fixed image: /ants_template/oasis/T_template0.nii.gz
201113-09:15:08,263 nipype.interface INFO:
stdout 2020-11-13T09:15:08.263938: moving image: /outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/inu_n4/mapflow/_inu_n40/sub-071_ses-2_T1w_resample_maths_corrected.nii.gz
201113-09:15:09,14 nipype.interface INFO:
stdout 2020-11-13T09:15:09.014088: fixed image: /outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl/T_template0_maths.nii.gz
201113-09:15:09,14 nipype.interface INFO:
stdout 2020-11-13T09:15:09.014424: moving image: /outputs/tmp/resting_preproc_sub-071_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_target/sub-071_ses-2_T1w_resample_maths_corrected_maths.nii.gz
201113-09:15:09,807 nipype.interface INFO:
stdout 2020-11-13T09:15:09.807227:Dimension = 3
201113-09:15:09,807 nipype.interface INFO:
stdout 2020-11-13T09:15:09.807562:Number of stages = 3
201113-09:15:09,807 nipype.interface INFO:
stdout 2020-11-13T09:15:09.807706:Use Histogram Matching true
201113-09:15:09,807 nipype.interface INFO:
stdout 2020-11-13T09:15:09.807841:Winsorize image intensities true
201113-09:15:09,808 nipype.interface INFO:
stdout 2020-11-13T09:15:09.807984:Lower quantile = 0.025
201113-09:15:09,808 nipype.interface INFO:
stdout 2020-11-13T09:15:09.808134:Upper quantile = 0.975
201113-09:15:09,808 nipype.interface INFO:
stdout 2020-11-13T09:15:09.808271:Stage 1 State
201113-09:15:09,808 nipype.interface INFO:
stdout 2020-11-13T09:15:09.808403: Image metric = Mattes
201113-09:15:09,808 nipype.interface INFO:
stdout 2020-11-13T09:15:09.808563: Fixed image = Image (0x555555c46520)
201113-09:15:09,808 nipype.interface INFO:
stdout 2020-11-13T09:15:09.808563: RTTI typeinfo: itk::Image<float, 3u>
201113-09:15:09,808 nipype.interface INFO:
stdout 2020-11-13T09:15:09.808779: Reference Count: 2
201113-09:15:09,808 nipype.interface INFO:
stdout 2020-11-13T09:15:09.808907: Modified Time: 1602
201113-09:15:09,809 nipype.interface INFO:
stdout 2020-11-13T09:15:09.809038: Debug: Off
201113-09:15:09,809 nipype.interface INFO:
stdout 2020-11-13T09:15:09.809038: Object Name:
201113-09:15:09,809 nipype.interface INFO:
stdout 2020-11-13T09:15:09.809253: Observers:
201113-09:15:09,809 nipype.interface INFO:
stdout 2020-11-13T09:15:09.809253: none
201113-09:15:09,809 nipype.interface INFO:
stdout 2020-11-13T09:15:09.809253: Source: (none)
201113-09:15:09,809 nipype.interface INFO:
stdout 2020-11-13T09:15:09.809253: Source output name: (none)
201113-09:15:09,809 nipype.interface INFO:
stdout 2020-11-13T09:15:09.809253: Release Data: Off
201113-09:15:09,809 nipype.interface INFO:
stdout 2020-11-13T09:15:09.809253: Data Released: False
201113-09:15:09,809 nipype.interface INFO:
stdout 2020-11-13T09:15:09.809253: Global Release Data: Off
201113-09:15:09,809 nipype.interface INFO:
stdout 2020-11-13T09:15:09.809253: PipelineMTime: 0
201113-09:15:09,809 nipype.interface INFO:
stdout 2020-11-13T09:15:09.809935: UpdateMTime: 1435
201113-09:15:09,810 nipype.interface INFO:
stdout 2020-11-13T09:15:09.810114: RealTimeStamp: 0 seconds
201113-09:15:09,810 nipype.interface INFO:
stdout 2020-11-13T09:15:09.810263: LargestPossibleRegion:
201113-09:15:09,810 nipype.interface INFO:
stdout 2020-11-13T09:15:09.810437: Dimension: 3
201113-09:15:09,810 nipype.interface INFO:
stdout 2020-11-13T09:15:09.810566: Index: [0, 0, 0]
201113-09:15:09,810 nipype.interface INFO:
stdout 2020-11-13T09:15:09.810694: Size: [216, 256, 291]
201113-09:15:09,810 nipype.interface INFO:
stdout 2020-11-13T09:15:09.810820: BufferedRegion:
201113-09:15:09,810 nipype.interface INFO:
stdout 2020-11-13T09:15:09.810944: Dimension: 3
201113-09:15:09,811 nipype.interface INFO:
stdout 2020-11-13T09:15:09.811079: Index: [0, 0, 0]
201113-09:15:09,811 nipype.interface INFO:
stdout 2020-11-13T09:15:09.811206: Size: [216, 256, 291]
201113-09:15:09,811 nipype.interface INFO:
stdout 2020-11-13T09:15:09.811330: RequestedRegion:
201113-09:15:09,811 nipype.interface INFO:
stdout 2020-11-13T09:15:09.811455: Dimension: 3
201113-09:15:09,811 nipype.interface INFO:
stdout 2020-11-13T09:15:09.811583: Index: [0, 0, 0]
201113-09:15:09,811 nipype.interface INFO:
stdout 2020-11-13T09:15:09.811709: Size: [216, 256, 291]
201113-09:15:09,811 nipype.interface INFO:
stdout 2020-11-13T09:15:09.811840: Spacing: [1, 1, 1]
201113-09:15:09,811 nipype.interface INFO:
stdout 2020-11-13T09:15:09.811972: Origin: [0, 293, 0]
201113-09:15:09,812 nipype.interface INFO:
stdout 2020-11-13T09:15:09.812106: Direction:
201113-09:15:09,812 nipype.interface INFO:
stdout 2020-11-13T09:15:09.812240:1 0 0
201113-09:15:09,812 nipype.interface INFO:
stdout 2020-11-13T09:15:09.812240:0 -0 -1
201113-09:15:09,812 nipype.interface INFO:
stdout 2020-11-13T09:15:09.812240:0 -1 -0
201113-09:15:09,812 nipype.interface INFO:
stdout 2020-11-13T09:15:09.812240:
201113-09:15:09,812 nipype.interface INFO:
stdout 2020-11-13T09:15:09.812605: IndexToPointMatrix:
201113-09:15:09,812 nipype.interface INFO:
stdout 2020-11-13T09:15:09.812736:1 0 0
201113-09:15:09,812 nipype.interface INFO:
stdout 2020-11-13T09:15:09.812736:0 0 -1
201113-09:15:09,812 nipype.interface INFO:
stdout 2020-11-13T09:15:09.812736:0 -1 0
201113-09:15:09,813 nipype.interface INFO:
stdout 2020-11-13T09:15:09.812736:
201113-09:15:09,813 nipype.interface INFO:
stdout 2020-11-13T09:15:09.813118: PointToIndexMatrix:
201113-09:15:09,813 nipype.interface INFO:
stdout 2020-11-13T09:15:09.813252:1 0 0
201113-09:15:09,813 nipype.interface INFO:
stdout 2020-11-13T09:15:09.813252:0 0 -1
201113-09:15:09,813 nipype.interface INFO:
stdout 2020-11-13T09:15:09.813252:0 -1 0
201113-09:15:09,813 nipype.interface INFO:
stdout 2020-11-13T09:15:09.813252:
201113-09:15:09,813 nipype.interface INFO:
stdout 2020-11-13T09:15:09.813615: Inverse Direction:
201113-09:15:09,813 nipype.interface INFO:
stdout 2020-11-13T09:15:09.813747:1 0 0
201113-09:15:09,813 nipype.interface INFO:
stdout 2020-11-13T09:15:09.813747:0 0 -1
201113-09:15:09,813 nipype.interface INFO:
stdout 2020-11-13T09:15:09.813747:0 -1 0
201113-09:15:09,814 nipype.interface INFO:
stdout 2020-11-13T09:15:09.813747:
201113-09:15:09,814 nipype.interface INFO:
stdout 2020-11-13T09:15:09.814125: PixelContainer:
201113-09:15:09,814 nipype.interface INFO:
stdout 2020-11-13T09:15:09.814262: ImportImageContainer (0x555555c355d0)
201113-09:15:09,814 nipype.interface INFO:
stdout 2020-11-13T09:15:09.814262: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201113-09:15:09,814 nipype.interface INFO:
stdout 2020-11-13T09:15:09.814471: Reference Count: 1
201113-09:15:09,814 nipype.interface INFO:
stdout 2020-11-13T09:15:09.814596: Modified Time: 1432
201113-09:15:09,814 nipype.interface INFO:
stdout 2020-11-13T09:15:09.814729: Debug: Off
201113-09:15:09,814 nipype.interface INFO:
stdout 2020-11-13T09:15:09.814729: Object Name:
201113-09:15:09,814 nipype.interface INFO:
stdout 2020-11-13T09:15:09.814938: Observers:
201113-09:15:09,815 nipype.interface INFO:
stdout 2020-11-13T09:15:09.814938: none
201113-09:15:09,815 nipype.interface INFO:
stdout 2020-11-13T09:15:09.814938: Pointer: 0x2aaab48b5010
201113-09:15:09,815 nipype.interface INFO:
stdout 2020-11-13T09:15:09.815235: Container manages memory: true
201113-09:15:09,815 nipype.interface INFO:
stdout 2020-11-13T09:15:09.815362: Size: 16091136
201113-09:15:09,815 nipype.interface INFO:
stdout 2020-11-13T09:15:09.815487: Capacity: 16091136
201113-09:15:09,815 nipype.interface INFO:
stdout 2020-11-13T09:15:09.815612:
201113-09:15:09,815 nipype.interface INFO:
stdout 2020-11-13T09:15:09.815741: Moving image = Image (0x555555c43360)
201113-09:15:09,815 nipype.interface INFO:
stdout 2020-11-13T09:15:09.815741: RTTI typeinfo: itk::Image<float, 3u>
201113-09:15:09,815 nipype.interface INFO:
stdout 2020-11-13T09:15:09.815949: Reference Count: 2
201113-09:15:09,820 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Modified Time: 1603
201113-09:15:09,820 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Debug: Off
201113-09:15:09,820 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Object Name:
201113-09:15:09,820 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Observers:
201113-09:15:09,820 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: none
201113-09:15:09,820 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Source: (none)
201113-09:15:09,820 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Source output name: (none)
201113-09:15:09,820 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Release Data: Off
201113-09:15:09,821 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Data Released: False
201113-09:15:09,821 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Global Release Data: Off
201113-09:15:09,821 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: PipelineMTime: 0
201113-09:15:09,821 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: UpdateMTime: 1600
201113-09:15:09,821 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: RealTimeStamp: 0 seconds
201113-09:15:09,821 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: LargestPossibleRegion:
201113-09:15:09,821 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Dimension: 3
201113-09:15:09,821 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Index: [0, 0, 0]
201113-09:15:09,821 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Size: [192, 256, 256]
201113-09:15:09,821 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: BufferedRegion:
201113-09:15:09,821 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Dimension: 3
201113-09:15:09,821 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Index: [0, 0, 0]
201113-09:15:09,821 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Size: [192, 256, 256]
201113-09:15:09,822 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: RequestedRegion:
201113-09:15:09,822 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Dimension: 3
201113-09:15:09,822 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Index: [0, 0, 0]
201113-09:15:09,822 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Size: [192, 256, 256]
201113-09:15:09,822 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Spacing: [1, 1, 1]
201113-09:15:09,822 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Origin: [-101.154, 118.077, -107.324]
201113-09:15:09,822 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Direction:
201113-09:15:09,822 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:1 0 0
201113-09:15:09,822 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 -1 0
201113-09:15:09,822 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 0 1
201113-09:15:09,822 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:
201113-09:15:09,822 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: IndexToPointMatrix:
201113-09:15:09,822 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:1 0 0
201113-09:15:09,823 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 -1 0
201113-09:15:09,823 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 0 1
201113-09:15:09,823 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:
201113-09:15:09,823 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: PointToIndexMatrix:
201113-09:15:09,823 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0.999997 0 0
201113-09:15:09,823 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 -1 0
201113-09:15:09,823 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 0 1
201113-09:15:09,823 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:
201113-09:15:09,823 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Inverse Direction:
201113-09:15:09,823 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:1 0 0
201113-09:15:09,823 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 -1 0
201113-09:15:09,823 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 0 1
201113-09:15:09,823 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:
201113-09:15:09,824 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: PixelContainer:
201113-09:15:09,824 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: ImportImageContainer (0x555555c36680)
201113-09:15:09,824 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201113-09:15:09,824 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Reference Count: 1
201113-09:15:09,824 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Modified Time: 1597
201113-09:15:09,824 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Debug: Off
201113-09:15:09,824 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Object Name:
201113-09:15:09,824 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Observers:
201113-09:15:09,824 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: none
201113-09:15:09,824 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Pointer: 0x2aaab8618010
201113-09:15:09,824 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Container manages memory: true
201113-09:15:09,824 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Size: 12582912
201113-09:15:09,824 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Capacity: 12582912
201113-09:15:09,825 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:
201113-09:15:09,825 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Weighting = 1
201113-09:15:09,825 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Sampling strategy = regular
201113-09:15:09,825 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Number of bins = 32
201113-09:15:09,825 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Radius = 4
201113-09:15:09,825 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Sampling percentage = 0.25
201113-09:15:09,825 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Transform = Rigid
201113-09:15:09,825 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Gradient step = 0.1
201113-09:15:09,825 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Update field sigma (voxel space) = 0
201113-09:15:09,825 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Total field sigma (voxel space) = 0
201113-09:15:09,825 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Update field time sigma = 0
201113-09:15:09,825 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Total field time sigma = 0
201113-09:15:09,825 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Number of time indices = 0
201113-09:15:09,826 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Number of time point samples = 0
201113-09:15:09,826 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:Stage 2 State
201113-09:15:09,826 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Image metric = Mattes
201113-09:15:09,826 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Fixed image = Image (0x555555c45e20)
201113-09:15:09,826 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: RTTI typeinfo: itk::Image<float, 3u>
201113-09:15:09,826 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Reference Count: 2
201113-09:15:09,826 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Modified Time: 1932
201113-09:15:09,826 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Debug: Off
201113-09:15:09,826 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Object Name:
201113-09:15:09,826 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Observers:
201113-09:15:09,826 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: none
201113-09:15:09,826 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Source: (none)
201113-09:15:09,826 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Source output name: (none)
201113-09:15:09,827 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Release Data: Off
201113-09:15:09,827 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Data Released: False
201113-09:15:09,827 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Global Release Data: Off
201113-09:15:09,827 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: PipelineMTime: 0
201113-09:15:09,827 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: UpdateMTime: 1765
201113-09:15:09,827 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: RealTimeStamp: 0 seconds
201113-09:15:09,827 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: LargestPossibleRegion:
201113-09:15:09,827 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Dimension: 3
201113-09:15:09,827 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Index: [0, 0, 0]
201113-09:15:09,827 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Size: [216, 256, 291]
201113-09:15:09,827 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: BufferedRegion:
201113-09:15:09,827 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Dimension: 3
201113-09:15:09,827 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Index: [0, 0, 0]
201113-09:15:09,828 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Size: [216, 256, 291]
201113-09:15:09,828 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: RequestedRegion:
201113-09:15:09,828 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Dimension: 3
201113-09:15:09,828 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Index: [0, 0, 0]
201113-09:15:09,828 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Size: [216, 256, 291]
201113-09:15:09,828 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Spacing: [1, 1, 1]
201113-09:15:09,828 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Origin: [0, 293, 0]
201113-09:15:09,828 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Direction:
201113-09:15:09,828 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:1 0 0
201113-09:15:09,828 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 -0 -1
201113-09:15:09,828 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 -1 -0
201113-09:15:09,828 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:
201113-09:15:09,828 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: IndexToPointMatrix:
201113-09:15:09,829 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:1 0 0
201113-09:15:09,829 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 0 -1
201113-09:15:09,829 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 -1 0
201113-09:15:09,829 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:
201113-09:15:09,829 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: PointToIndexMatrix:
201113-09:15:09,829 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:1 0 0
201113-09:15:09,829 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 0 -1
201113-09:15:09,829 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 -1 0
201113-09:15:09,829 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:
201113-09:15:09,829 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Inverse Direction:
201113-09:15:09,829 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:1 0 0
201113-09:15:09,829 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 0 -1
201113-09:15:09,829 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 -1 0
201113-09:15:09,829 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:
201113-09:15:09,840 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: PixelContainer:
201113-09:15:09,840 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: ImportImageContainer (0x555555c36800)
201113-09:15:09,840 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201113-09:15:09,840 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Reference Count: 1
201113-09:15:09,840 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Modified Time: 1762
201113-09:15:09,840 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Debug: Off
201113-09:15:09,840 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Object Name:
201113-09:15:09,840 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Observers:
201113-09:15:09,840 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: none
201113-09:15:09,840 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Pointer: 0x2aaabb619010
201113-09:15:09,840 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Container manages memory: true
201113-09:15:09,840 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Size: 16091136
201113-09:15:09,841 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Capacity: 16091136
201113-09:15:09,841 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:
201113-09:15:09,841 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Moving image = Image (0x555555c413b0)
201113-09:15:09,841 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: RTTI typeinfo: itk::Image<float, 3u>
201113-09:15:09,841 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Reference Count: 2
201113-09:15:09,841 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Modified Time: 1933
201113-09:15:09,841 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Debug: Off
201113-09:15:09,841 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Object Name:
201113-09:15:09,841 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Observers:
201113-09:15:09,841 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: none
201113-09:15:09,841 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Source: (none)
201113-09:15:09,841 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Source output name: (none)
201113-09:15:09,842 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Release Data: Off
201113-09:15:09,842 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Data Released: False
201113-09:15:09,842 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Global Release Data: Off
201113-09:15:09,842 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: PipelineMTime: 0
201113-09:15:09,842 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: UpdateMTime: 1930
201113-09:15:09,842 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: RealTimeStamp: 0 seconds
201113-09:15:09,842 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: LargestPossibleRegion:
201113-09:15:09,842 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Dimension: 3
201113-09:15:09,842 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Index: [0, 0, 0]
201113-09:15:09,842 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Size: [192, 256, 256]
201113-09:15:09,842 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: BufferedRegion:
201113-09:15:09,843 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Dimension: 3
201113-09:15:09,843 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Index: [0, 0, 0]
201113-09:15:09,843 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Size: [192, 256, 256]
201113-09:15:09,843 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: RequestedRegion:
201113-09:15:09,843 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Dimension: 3
201113-09:15:09,843 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Index: [0, 0, 0]
201113-09:15:09,843 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Size: [192, 256, 256]
201113-09:15:09,843 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Spacing: [1, 1, 1]
201113-09:15:09,843 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Origin: [-101.154, 118.077, -107.324]
201113-09:15:09,843 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Direction:
201113-09:15:09,843 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:1 0 0
201113-09:15:09,843 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 -1 0
201113-09:15:09,843 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 0 1
201113-09:15:09,844 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:
201113-09:15:09,844 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: IndexToPointMatrix:
201113-09:15:09,844 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:1 0 0
201113-09:15:09,844 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 -1 0
201113-09:15:09,844 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 0 1
201113-09:15:09,844 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:
201113-09:15:09,844 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: PointToIndexMatrix:
201113-09:15:09,844 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0.999997 0 0
201113-09:15:09,844 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 -1 0
201113-09:15:09,844 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 0 1
201113-09:15:09,844 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:
201113-09:15:09,844 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Inverse Direction:
201113-09:15:09,844 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:1 0 0
201113-09:15:09,845 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 -1 0
201113-09:15:09,845 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:0 0 1
201113-09:15:09,845 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:
201113-09:15:09,845 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: PixelContainer:
201113-09:15:09,845 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: ImportImageContainer (0x555555c30560)
201113-09:15:09,845 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201113-09:15:09,845 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Reference Count: 1
201113-09:15:09,845 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Modified Time: 1927
201113-09:15:09,845 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Debug: Off
201113-09:15:09,845 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Object Name:
201113-09:15:09,845 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Observers:
201113-09:15:09,845 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: none
201113-09:15:09,845 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Pointer: 0x2aaabf37c010
201113-09:15:09,846 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Container manages memory: true
201113-09:15:09,846 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Size: 12582912
201113-09:15:09,846 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Capacity: 12582912
201113-09:15:09,846 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063:
201113-09:15:09,846 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Weighting = 1
201113-09:15:09,846 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Sampling strategy = regular
201113-09:15:09,846 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Number of bins = 32
201113-09:15:09,846 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Radius = 4
201113-09:15:09,846 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Sampling percentage = 0.25
201113-09:15:09,846 nipype.interface INFO:
stdout 2020-11-13T09:15:09.820063: Transform = Affine
201113-09:15:09,846 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Gradient step = 0.1
201113-09:15:09,847 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Update field sigma (voxel space) = 0
201113-09:15:09,847 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Total field sigma (voxel space) = 0
201113-09:15:09,847 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Update field time sigma = 0
201113-09:15:09,847 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Total field time sigma = 0
201113-09:15:09,847 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Number of time indices = 0
201113-09:15:09,847 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Number of time point samples = 0
201113-09:15:09,847 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:Stage 3 State
201113-09:15:09,847 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Image metric = CC
201113-09:15:09,847 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Fixed image = Image (0x555555c3c620)
201113-09:15:09,847 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: RTTI typeinfo: itk::Image<float, 3u>
201113-09:15:09,847 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Reference Count: 2
201113-09:15:09,847 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Modified Time: 2262
201113-09:15:09,847 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Debug: Off
201113-09:15:09,848 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Object Name:
201113-09:15:09,848 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Observers:
201113-09:15:09,848 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: none
201113-09:15:09,848 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Source: (none)
201113-09:15:09,848 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Source output name: (none)
201113-09:15:09,848 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Release Data: Off
201113-09:15:09,848 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Data Released: False
201113-09:15:09,848 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Global Release Data: Off
201113-09:15:09,848 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: PipelineMTime: 0
201113-09:15:09,848 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: UpdateMTime: 2095
201113-09:15:09,848 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: RealTimeStamp: 0 seconds
201113-09:15:09,848 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: LargestPossibleRegion:
201113-09:15:09,848 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Dimension: 3
201113-09:15:09,849 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Index: [0, 0, 0]
201113-09:15:09,849 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Size: [216, 256, 291]
201113-09:15:09,849 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: BufferedRegion:
201113-09:15:09,849 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Dimension: 3
201113-09:15:09,849 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Index: [0, 0, 0]
201113-09:15:09,849 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Size: [216, 256, 291]
201113-09:15:09,849 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: RequestedRegion:
201113-09:15:09,849 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Dimension: 3
201113-09:15:09,849 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Index: [0, 0, 0]
201113-09:15:09,849 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Size: [216, 256, 291]
201113-09:15:09,849 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Spacing: [1, 1, 1]
201113-09:15:09,849 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Origin: [0, 293, 0]
201113-09:15:09,849 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Direction:
201113-09:15:09,850 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:1 0 0
201113-09:15:09,860 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:0 -0 -1
201113-09:15:09,860 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:0 -1 -0
201113-09:15:09,860 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:
201113-09:15:09,860 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: IndexToPointMatrix:
201113-09:15:09,860 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:1 0 0
201113-09:15:09,860 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:0 0 -1
201113-09:15:09,860 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:0 -1 0
201113-09:15:09,860 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:
201113-09:15:09,860 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: PointToIndexMatrix:
201113-09:15:09,860 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:1 0 0
201113-09:15:09,860 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:0 0 -1
201113-09:15:09,861 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:0 -1 0
201113-09:15:09,861 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:
201113-09:15:09,861 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Inverse Direction:
201113-09:15:09,861 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:1 0 0
201113-09:15:09,861 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:0 0 -1
201113-09:15:09,861 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:0 -1 0
201113-09:15:09,861 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:
201113-09:15:09,861 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: PixelContainer:
201113-09:15:09,861 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: ImportImageContainer (0x555555c45d80)
201113-09:15:09,861 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201113-09:15:09,861 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Reference Count: 1
201113-09:15:09,861 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Modified Time: 2092
201113-09:15:09,861 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Debug: Off
201113-09:15:09,862 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Object Name:
201113-09:15:09,862 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Observers:
201113-09:15:09,862 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: none
201113-09:15:09,862 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Pointer: 0x2aaac237d010
201113-09:15:09,862 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Container manages memory: true
201113-09:15:09,862 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Size: 16091136
201113-09:15:09,862 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Capacity: 16091136
201113-09:15:09,862 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:
201113-09:15:09,862 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Moving image = Image (0x555555c427d0)
201113-09:15:09,862 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: RTTI typeinfo: itk::Image<float, 3u>
201113-09:15:09,862 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Reference Count: 2
201113-09:15:09,862 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Modified Time: 2263
201113-09:15:09,862 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Debug: Off
201113-09:15:09,863 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Object Name:
201113-09:15:09,863 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Observers:
201113-09:15:09,863 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: none
201113-09:15:09,863 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Source: (none)
201113-09:15:09,863 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Source output name: (none)
201113-09:15:09,863 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Release Data: Off
201113-09:15:09,863 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Data Released: False
201113-09:15:09,863 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Global Release Data: Off
201113-09:15:09,863 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: PipelineMTime: 0
201113-09:15:09,863 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: UpdateMTime: 2260
201113-09:15:09,863 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: RealTimeStamp: 0 seconds
201113-09:15:09,863 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: LargestPossibleRegion:
201113-09:15:09,863 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Dimension: 3
201113-09:15:09,864 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Index: [0, 0, 0]
201113-09:15:09,864 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Size: [192, 256, 256]
201113-09:15:09,864 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: BufferedRegion:
201113-09:15:09,864 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Dimension: 3
201113-09:15:09,864 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Index: [0, 0, 0]
201113-09:15:09,864 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Size: [192, 256, 256]
201113-09:15:09,864 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: RequestedRegion:
201113-09:15:09,864 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Dimension: 3
201113-09:15:09,864 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Index: [0, 0, 0]
201113-09:15:09,864 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Size: [192, 256, 256]
201113-09:15:09,864 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Spacing: [1, 1, 1]
201113-09:15:09,864 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Origin: [-101.154, 118.077, -107.324]
201113-09:15:09,864 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Direction:
201113-09:15:09,865 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:1 0 0
201113-09:15:09,865 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:0 -1 0
201113-09:15:09,865 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:0 0 1
201113-09:15:09,865 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:
201113-09:15:09,865 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: IndexToPointMatrix:
201113-09:15:09,865 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:1 0 0
201113-09:15:09,865 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:0 -1 0
201113-09:15:09,865 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:0 0 1
201113-09:15:09,865 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:
201113-09:15:09,865 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: PointToIndexMatrix:
201113-09:15:09,865 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:0.999997 0 0
201113-09:15:09,865 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:0 -1 0
201113-09:15:09,865 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:0 0 1
201113-09:15:09,866 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:
201113-09:15:09,866 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Inverse Direction:
201113-09:15:09,866 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:1 0 0
201113-09:15:09,866 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:0 -1 0
201113-09:15:09,866 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:0 0 1
201113-09:15:09,866 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:
201113-09:15:09,866 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: PixelContainer:
201113-09:15:09,866 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: ImportImageContainer (0x555555c0f6f0)
201113-09:15:09,866 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
201113-09:15:09,866 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Reference Count: 1
201113-09:15:09,866 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Modified Time: 2257
201113-09:15:09,866 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Debug: Off
201113-09:15:09,866 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Object Name:
201113-09:15:09,867 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Observers:
201113-09:15:09,867 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: none
201113-09:15:09,867 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Pointer: 0x2aaac60e0010
201113-09:15:09,867 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Container manages memory: true
201113-09:15:09,867 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Size: 12582912
201113-09:15:09,867 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Capacity: 12582912
201113-09:15:09,867 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:
201113-09:15:09,867 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Weighting = 0.5
201113-09:15:09,867 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Sampling strategy = none
201113-09:15:09,867 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Number of bins = 32
201113-09:15:09,867 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Radius = 4
201113-09:15:09,867 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Sampling percentage = 1
201113-09:15:09,867 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Transform = SyN
201113-09:15:09,868 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Gradient step = 0.1
201113-09:15:09,868 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Update field sigma (voxel space) = 3
201113-09:15:09,868 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Total field sigma (voxel space) = 0
201113-09:15:09,868 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Update field time sigma = 0
201113-09:15:09,868 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Total field time sigma = 0
201113-09:15:09,868 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Number of time indices = 0
201113-09:15:09,868 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: Number of time point samples = 0
201113-09:15:09,868 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:Registration using 3 total stages.
201113-09:15:09,868 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:
201113-09:15:09,868 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826:Stage 0
201113-09:15:09,868 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: iterations = 1000x500x250x100
201113-09:15:09,868 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: convergence threshold = 1e-08
201113-09:15:09,868 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: convergence window size = 10
201113-09:15:09,868 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: number of levels = 4
201113-09:15:09,869 nipype.interface INFO:
stdout 2020-11-13T09:15:09.846826: using the Mattes MI metric (number of bins = 32, weight = 1)
201113-09:15:12,519 nipype.interface INFO:
stdout 2020-11-13T09:15:12.519613: preprocessing: winsorizing the image intensities
201113-09:15:12,519 nipype.interface INFO:
stdout 2020-11-13T09:15:12.519613: preprocessing: histogram matching the images
201113-09:15:12,520 nipype.interface INFO:
stdout 2020-11-13T09:15:12.520098: Shrink factors (level 1 out of 4): [8, 8, 8]
201113-09:15:12,520 nipype.interface INFO:
stdout 2020-11-13T09:15:12.520246: Shrink factors (level 2 out of 4): [4, 4, 4]
201113-09:15:12,520 nipype.interface INFO:
stdout 2020-11-13T09:15:12.520381: Shrink factors (level 3 out of 4): [2, 2, 2]
201113-09:15:12,520 nipype.interface INFO:
stdout 2020-11-13T09:15:12.520512: Shrink factors (level 4 out of 4): [1, 1, 1]
201113-09:15:12,520 nipype.interface INFO:
stdout 2020-11-13T09:15:12.520692: smoothing sigmas per level: [4, 2, 1, 0]
201113-09:15:12,520 nipype.interface INFO:
stdout 2020-11-13T09:15:12.520833: regular sampling (percentage = 0.25)
201113-09:15:12,525 nipype.interface INFO:
stdout 2020-11-13T09:15:12.525895:
201113-09:15:12,526 nipype.interface INFO:
stdout 2020-11-13T09:15:12.526075:*** Running Euler3DTransform registration ***
201113-09:15:12,526 nipype.interface INFO:
stdout 2020-11-13T09:15:12.526219:
201113-09:15:24,707 nipype.interface INFO:
stdout 2020-11-13T09:15:24.707293:DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201113-09:15:24,707 nipype.interface INFO:
stdout 2020-11-13T09:15:24.707675: 2DIAGNOSTIC, 1, -9.051444530487e-01, inf, 1.2184e+01, 1.2184e+01,
201113-09:15:24,716 nipype.interface INFO:
stdout 2020-11-13T09:15:24.716101: 2DIAGNOSTIC, 2, -9.063696861267e-01, inf, 1.2192e+01, 8.2440e-03,
201113-09:15:24,724 nipype.interface INFO:
stdout 2020-11-13T09:15:24.724802: 2DIAGNOSTIC, 3, -9.079306721687e-01, inf, 1.2201e+01, 8.5149e-03,
201113-09:15:24,733 nipype.interface INFO:
stdout 2020-11-13T09:15:24.733238: 2DIAGNOSTIC, 4, -9.095421433449e-01, inf, 1.2209e+01, 8.2519e-03,
201113-09:15:24,741 nipype.interface INFO:
stdout 2020-11-13T09:15:24.741758: 2DIAGNOSTIC, 5, -9.107566475868e-01, inf, 1.2217e+01, 8.3420e-03,
201113-09:15:24,750 nipype.interface INFO:
stdout 2020-11-13T09:15:24.750188: 2DIAGNOSTIC, 6, -9.117047190666e-01, inf, 1.2226e+01, 8.2300e-03,
201113-09:15:24,760 nipype.interface INFO:
stdout 2020-11-13T09:15:24.760242: 2DIAGNOSTIC, 7, -9.150040745735e-01, inf, 1.2235e+01, 9.8770e-03,
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stdout 2020-11-13T09:15:31.863271: 2DIAGNOSTIC, 696, -9.241632223129e-01, 4.565480793417e-08, 1.9206e+01, 9.9890e-03,
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stdout 2020-11-13T09:15:31.894066: 2DIAGNOSTIC, 699, -9.241632223129e-01, 4.550606647058e-08, 1.9236e+01, 1.0267e-02,
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stdout 2020-11-13T09:15:31.904230: 2DIAGNOSTIC, 700, -9.241631627083e-01, 4.543426612713e-08, 1.9246e+01, 9.9730e-03,
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stdout 2020-11-13T09:15:31.975897: 2DIAGNOSTIC, 707, -9.241631031036e-01, 4.488621385690e-08, 1.9316e+01, 1.0369e-02,
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stdout 2020-11-13T09:15:31.996332: 2DIAGNOSTIC, 709, -9.241630434990e-01, 4.476581594304e-08, 1.9336e+01, 1.0072e-02,
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stdout 2020-11-13T09:15:32.006495: 2DIAGNOSTIC, 710, -9.241631031036e-01, 4.471028347552e-08, 1.9346e+01, 9.9750e-03,
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stdout 2020-11-13T09:15:32.016663: 2DIAGNOSTIC, 711, -9.241631627083e-01, 4.468962089277e-08, 1.9356e+01, 9.9769e-03,
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stdout 2020-11-13T09:15:32.026950: 2DIAGNOSTIC, 712, -9.241631627083e-01, 4.467349157267e-08, 1.9366e+01, 1.0104e-02,
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stdout 2020-11-13T09:15:32.047409: 2DIAGNOSTIC, 714, -9.241631627083e-01, 4.464268599236e-08, 1.9386e+01, 1.0104e-02,
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stdout 2020-11-13T09:15:32.057576: 2DIAGNOSTIC, 715, -9.241631031036e-01, 4.456656199636e-08, 1.9396e+01, 9.9730e-03,
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stdout 2020-11-13T09:15:32.067745: 2DIAGNOSTIC, 716, -9.241631031036e-01, 4.448373758237e-08, 1.9406e+01, 9.9771e-03,
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stdout 2020-11-13T09:15:32.077910: 2DIAGNOSTIC, 717, -9.241631031036e-01, 4.439617029561e-08, 1.9416e+01, 9.9730e-03,
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stdout 2020-11-13T09:15:32.088081: 2DIAGNOSTIC, 718, -9.241630434990e-01, 4.428217081909e-08, 1.9426e+01, 9.9740e-03,
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stdout 2020-11-13T09:15:32.108884: 2DIAGNOSTIC, 720, -9.241631031036e-01, 4.409355014445e-08, 1.9447e+01, 9.9778e-03,
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stdout 2020-11-13T09:15:32.119053: 2DIAGNOSTIC, 721, -9.241631031036e-01, 4.405023901199e-08, 1.9457e+01, 9.9690e-03,
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stdout 2020-11-13T09:15:32.129224: 2DIAGNOSTIC, 722, -9.241631031036e-01, 4.401470476978e-08, 1.9467e+01, 9.9740e-03,
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stdout 2020-11-13T09:15:32.221273: 2DIAGNOSTIC, 731, -9.241631627083e-01, 4.357082161732e-08, 1.9557e+01, 1.0277e-02,
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stdout 2020-11-13T09:15:32.241764: 2DIAGNOSTIC, 733, -9.241631627083e-01, 4.340505554978e-08, 1.9577e+01, 1.0129e-02,
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stdout 2020-11-13T09:15:32.251929: 2DIAGNOSTIC, 734, -9.241631031036e-01, 4.332093439530e-08, 1.9587e+01, 9.9730e-03,
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stdout 2020-11-13T09:15:32.262100: 2DIAGNOSTIC, 735, -9.241631627083e-01, 4.326513547426e-08, 1.9597e+01, 9.9728e-03,
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stdout 2020-11-13T09:15:32.272266: 2DIAGNOSTIC, 736, -9.241632223129e-01, 4.323551294760e-08, 1.9607e+01, 9.9740e-03,
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stdout 2020-11-13T09:15:32.282428: 2DIAGNOSTIC, 737, -9.241632223129e-01, 4.320443380834e-08, 1.9617e+01, 9.9730e-03,
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stdout 2020-11-13T09:15:32.292684: 2DIAGNOSTIC, 738, -9.241632223129e-01, 4.317081447880e-08, 1.9627e+01, 1.0072e-02,
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stdout 2020-11-13T09:15:32.302848: 2DIAGNOSTIC, 739, -9.241632223129e-01, 4.313216450669e-08, 1.9637e+01, 9.9740e-03,
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stdout 2020-11-13T09:15:32.313013: 2DIAGNOSTIC, 740, -9.241632223129e-01, 4.308543211096e-08, 1.9647e+01, 9.9759e-03,
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stdout 2020-11-13T09:15:32.333359: 2DIAGNOSTIC, 742, -9.241631627083e-01, 4.291742072837e-08, 1.9667e+01, 9.9900e-03,
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stdout 2020-11-13T09:15:32.343920: 2DIAGNOSTIC, 743, -9.241631627083e-01, 4.282810905920e-08, 1.9677e+01, 1.0374e-02,
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stdout 2020-11-13T09:15:32.354101: 2DIAGNOSTIC, 744, -9.241631627083e-01, 4.271286613289e-08, 1.9687e+01, 9.9759e-03,
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stdout 2020-11-13T09:15:32.364265: 2DIAGNOSTIC, 745, -9.241631627083e-01, 4.262684427658e-08, 1.9697e+01, 9.9728e-03,
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stdout 2020-11-13T09:15:32.384601: 2DIAGNOSTIC, 747, -9.241632819176e-01, 4.257729102619e-08, 1.9717e+01, 9.9730e-03,
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stdout 2020-11-13T09:15:32.394869: 2DIAGNOSTIC, 748, -9.241632819176e-01, 4.258039609795e-08, 1.9727e+01, 1.0084e-02,
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stdout 2020-11-13T09:15:32.405035: 2DIAGNOSTIC, 749, -9.241632819176e-01, 4.257929830942e-08, 1.9737e+01, 9.9709e-03,
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stdout 2020-11-13T09:15:32.445785: 2DIAGNOSTIC, 753, -9.241632819176e-01, 4.238878759111e-08, 1.9777e+01, 1.0069e-02,
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stdout 2020-11-13T09:15:32.497033: 2DIAGNOSTIC, 758, -9.241632819176e-01, 4.196909841880e-08, 1.9827e+01, 1.0089e-02,
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stdout 2020-11-13T09:15:32.507200: 2DIAGNOSTIC, 759, -9.241632819176e-01, 4.190504299117e-08, 1.9837e+01, 9.9740e-03,
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stdout 2020-11-13T09:15:32.517368: 2DIAGNOSTIC, 760, -9.241632819176e-01, 4.186674829043e-08, 1.9847e+01, 9.9781e-03,
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stdout 2020-11-13T09:15:32.527533: 2DIAGNOSTIC, 761, -9.241632223129e-01, 4.177966772545e-08, 1.9857e+01, 9.9740e-03,
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stdout 2020-11-13T09:15:32.537700: 2DIAGNOSTIC, 762, -9.241632223129e-01, 4.169655909436e-08, 1.9867e+01, 9.9759e-03,
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stdout 2020-11-13T09:15:32.548019: 2DIAGNOSTIC, 763, -9.241632223129e-01, 4.161936217884e-08, 1.9877e+01, 1.0135e-02,
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stdout 2020-11-13T09:15:32.558187: 2DIAGNOSTIC, 764, -9.241632223129e-01, 4.154957267133e-08, 1.9887e+01, 9.9721e-03,
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stdout 2020-11-13T09:15:32.573871: 2DIAGNOSTIC, 765, -9.241632223129e-01, 4.148825283323e-08, 1.9903e+01, 1.5484e-02,
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stdout 2020-11-13T09:15:32.584064: 2DIAGNOSTIC, 766, -9.241631031036e-01, 4.141410769876e-08, 1.9913e+01, 9.9869e-03,
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stdout 2020-11-13T09:15:32.594704: 2DIAGNOSTIC, 767, -9.241631031036e-01, 4.132949626978e-08, 1.9923e+01, 1.0448e-02,
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stdout 2020-11-13T09:15:32.604878: 2DIAGNOSTIC, 768, -9.241631031036e-01, 4.125890384898e-08, 1.9933e+01, 9.9781e-03,
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stdout 2020-11-13T09:15:32.615052: 2DIAGNOSTIC, 769, -9.241631031036e-01, 4.120381191797e-08, 1.9943e+01, 9.9759e-03,
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stdout 2020-11-13T09:15:32.625332: 2DIAGNOSTIC, 770, -9.241631031036e-01, 4.116622775996e-08, 1.9953e+01, 1.0096e-02,
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stdout 2020-11-13T09:15:32.635505: 2DIAGNOSTIC, 771, -9.241629838943e-01, 4.107313245072e-08, 1.9963e+01, 9.9771e-03,
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stdout 2020-11-13T09:15:32.645816: 2DIAGNOSTIC, 772, -9.241631031036e-01, 4.104808581928e-08, 1.9974e+01, 1.0124e-02,
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stdout 2020-11-13T09:15:32.655982: 2DIAGNOSTIC, 773, -9.241631031036e-01, 4.103641160214e-08, 1.9983e+01, 9.9740e-03,
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stdout 2020-11-13T09:15:32.666157: 2DIAGNOSTIC, 774, -9.241631031036e-01, 4.103592843308e-08, 1.9993e+01, 9.9781e-03,
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stdout 2020-11-13T09:15:32.676325: 2DIAGNOSTIC, 775, -9.241631031036e-01, 4.104454021103e-08, 2.0003e+01, 9.9750e-03,
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stdout 2020-11-13T09:15:32.686494: 2DIAGNOSTIC, 776, -9.241631031036e-01, 4.100726158640e-08, 2.0013e+01, 9.9769e-03,
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stdout 2020-11-13T09:15:32.696814: 2DIAGNOSTIC, 777, -9.241631031036e-01, 4.096869687942e-08, 2.0024e+01, 1.0136e-02,
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stdout 2020-11-13T09:15:32.706980: 2DIAGNOSTIC, 778, -9.241631031036e-01, 4.092713368209e-08, 2.0034e+01, 9.9750e-03,
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stdout 2020-11-13T09:15:32.717441: 2DIAGNOSTIC, 779, -9.241631031036e-01, 4.088264660140e-08, 2.0044e+01, 1.0267e-02,
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stdout 2020-11-13T09:15:32.727614: 2DIAGNOSTIC, 780, -9.241631031036e-01, 4.083617000106e-08, 2.0054e+01, 9.9781e-03,
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stdout 2020-11-13T09:15:32.737780: 2DIAGNOSTIC, 781, -9.241631031036e-01, 4.073692139173e-08, 2.0064e+01, 9.9740e-03,
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stdout 2020-11-13T09:15:32.748152: 2DIAGNOSTIC, 782, -9.241631031036e-01, 4.068482084563e-08, 2.0074e+01, 1.0183e-02,
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stdout 2020-11-13T09:15:32.758319: 2DIAGNOSTIC, 783, -9.241631031036e-01, 4.063285174993e-08, 2.0084e+01, 9.9740e-03,
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stdout 2020-11-13T09:15:32.768486: 2DIAGNOSTIC, 784, -9.241631031036e-01, 4.058101410465e-08, 2.0094e+01, 9.9740e-03,
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stdout 2020-11-13T09:15:32.778657: 2DIAGNOSTIC, 785, -9.241632223129e-01, 4.057601898921e-08, 2.0104e+01, 9.9790e-03,
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stdout 2020-11-13T09:15:32.788827: 2DIAGNOSTIC, 786, -9.241632223129e-01, 4.056513702722e-08, 2.0114e+01, 9.9759e-03,
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stdout 2020-11-13T09:15:32.799178: 2DIAGNOSTIC, 787, -9.241632223129e-01, 4.054630764472e-08, 2.0124e+01, 1.0165e-02,
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stdout 2020-11-13T09:15:32.809344: 2DIAGNOSTIC, 788, -9.241632819176e-01, 4.053982394225e-08, 2.0134e+01, 9.9740e-03,
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stdout 2020-11-13T09:15:32.819508: 2DIAGNOSTIC, 789, -9.241632819176e-01, 4.051641511182e-08, 2.0144e+01, 9.9721e-03,
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stdout 2020-11-13T09:15:32.829676: 2DIAGNOSTIC, 790, -9.241633415222e-01, 4.049695334629e-08, 2.0154e+01, 9.9759e-03,
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stdout 2020-11-13T09:15:32.839842: 2DIAGNOSTIC, 791, -9.241634011269e-01, 4.047835489018e-08, 2.0164e+01, 9.9752e-03,
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stdout 2020-11-13T09:15:32.850420: 2DIAGNOSTIC, 792, -9.241633415222e-01, 4.041188361725e-08, 2.0174e+01, 1.0389e-02,
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stdout 2020-11-13T09:15:32.860604: 2DIAGNOSTIC, 793, -9.241633415222e-01, 4.032353473349e-08, 2.0184e+01, 9.9900e-03,
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stdout 2020-11-13T09:15:32.870798: 2DIAGNOSTIC, 794, -9.241633415222e-01, 4.021416089017e-08, 2.0194e+01, 9.9840e-03,
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stdout 2020-11-13T09:15:32.880968: 2DIAGNOSTIC, 795, -9.241633415222e-01, 4.013660870328e-08, 2.0204e+01, 9.9759e-03,
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stdout 2020-11-13T09:15:32.891249: 2DIAGNOSTIC, 796, -9.241633415222e-01, 4.004769493804e-08, 2.0214e+01, 1.0088e-02,
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stdout 2020-11-13T09:15:32.901420: 2DIAGNOSTIC, 797, -9.241633415222e-01, 3.995134889578e-08, 2.0224e+01, 9.9778e-03,
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stdout 2020-11-13T09:15:32.911928: 2DIAGNOSTIC, 798, -9.241633415222e-01, 3.987579333398e-08, 2.0235e+01, 1.0320e-02,
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stdout 2020-11-13T09:15:32.922187: 2DIAGNOSTIC, 799, -9.241633415222e-01, 3.979900498052e-08, 2.0245e+01, 1.0067e-02,
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stdout 2020-11-13T09:15:32.932359: 2DIAGNOSTIC, 800, -9.241633415222e-01, 3.974634665838e-08, 2.0255e+01, 9.9800e-03,
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stdout 2020-11-13T09:15:32.942918: 2DIAGNOSTIC, 801, -9.241633415222e-01, 3.971960538252e-08, 2.0265e+01, 1.0371e-02,
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stdout 2020-11-13T09:15:32.953110: 2DIAGNOSTIC, 802, -9.241633415222e-01, 3.967007344841e-08, 2.0275e+01, 9.9881e-03,
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stdout 2020-11-13T09:15:32.963278: 2DIAGNOSTIC, 803, -9.241633415222e-01, 3.962066230656e-08, 2.0285e+01, 9.9740e-03,
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stdout 2020-11-13T09:15:32.973733: 2DIAGNOSTIC, 804, -9.241633415222e-01, 3.957137195698e-08, 2.0295e+01, 1.0269e-02,
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stdout 2020-11-13T09:15:32.983907: 2DIAGNOSTIC, 805, -9.241633415222e-01, 3.952220950509e-08, 2.0305e+01, 9.9819e-03,
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stdout 2020-11-13T09:15:32.994193: 2DIAGNOSTIC, 806, -9.241633415222e-01, 3.947316429276e-08, 2.0315e+01, 1.0092e-02,
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stdout 2020-11-13T09:15:33.004361: 2DIAGNOSTIC, 807, -9.241633415222e-01, 3.942424342540e-08, 2.0325e+01, 9.9750e-03,
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stdout 2020-11-13T09:15:33.014528: 2DIAGNOSTIC, 808, -9.241631627083e-01, 3.930737335622e-08, 2.0335e+01, 9.9750e-03,
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stdout 2020-11-13T09:15:33.024850: 2DIAGNOSTIC, 809, -9.241631627083e-01, 3.919938862396e-08, 2.0345e+01, 1.0136e-02,
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stdout 2020-11-13T09:15:33.035022: 2DIAGNOSTIC, 810, -9.241632819176e-01, 3.914856350207e-08, 2.0355e+01, 9.9761e-03,
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stdout 2020-11-13T09:15:33.045318: 2DIAGNOSTIC, 811, -9.241632819176e-01, 3.910812651498e-08, 2.0366e+01, 1.0107e-02,
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stdout 2020-11-13T09:15:33.055484: 2DIAGNOSTIC, 812, -9.241632819176e-01, 3.908047219170e-08, 2.0375e+01, 9.9750e-03,
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stdout 2020-11-13T09:15:33.065652: 2DIAGNOSTIC, 813, -9.241632819176e-01, 3.906462708869e-08, 2.0385e+01, 9.9759e-03,
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stdout 2020-11-13T09:15:33.075817: 2DIAGNOSTIC, 814, -9.241632819176e-01, 3.905560674866e-08, 2.0395e+01, 9.9761e-03,
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stdout 2020-11-13T09:15:33.085987: 2DIAGNOSTIC, 815, -9.241632819176e-01, 3.904763445917e-08, 2.0405e+01, 9.9771e-03,
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stdout 2020-11-13T09:15:33.096607: 2DIAGNOSTIC, 816, -9.241632223129e-01, 3.901521594685e-08, 2.0416e+01, 1.0426e-02,
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stdout 2020-11-13T09:15:33.106780: 2DIAGNOSTIC, 817, -9.241632223129e-01, 3.898365008581e-08, 2.0426e+01, 9.9771e-03,
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stdout 2020-11-13T09:15:33.116953: 2DIAGNOSTIC, 818, -9.241633415222e-01, 3.892591138310e-08, 2.0436e+01, 9.9769e-03,
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stdout 2020-11-13T09:15:33.127125: 2DIAGNOSTIC, 819, -9.241632223129e-01, 3.881750032519e-08, 2.0446e+01, 9.9740e-03,
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stdout 2020-11-13T09:15:33.137294: 2DIAGNOSTIC, 820, -9.241632223129e-01, 3.875880238979e-08, 2.0456e+01, 9.9750e-03,
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stdout 2020-11-13T09:15:33.147652: 2DIAGNOSTIC, 821, -9.241632223129e-01, 3.870475140388e-08, 2.0466e+01, 1.0171e-02,
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stdout 2020-11-13T09:15:33.157828: 2DIAGNOSTIC, 822, -9.241632223129e-01, 3.865462261388e-08, 2.0476e+01, 9.9778e-03,
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stdout 2020-11-13T09:15:33.167991: 2DIAGNOSTIC, 823, -9.241632223129e-01, 3.860856168103e-08, 2.0486e+01, 9.9730e-03,
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stdout 2020-11-13T09:15:33.178164: 2DIAGNOSTIC, 824, -9.241631627083e-01, 3.854547259152e-08, 2.0496e+01, 9.9769e-03,
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stdout 2020-11-13T09:15:33.188329: 2DIAGNOSTIC, 825, -9.241631031036e-01, 3.846885832104e-08, 2.0506e+01, 9.9730e-03,
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stdout 2020-11-13T09:15:33.198688: 2DIAGNOSTIC, 826, -9.241631031036e-01, 3.837970297127e-08, 2.0516e+01, 1.0174e-02,
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stdout 2020-11-13T09:15:33.208854: 2DIAGNOSTIC, 827, -9.241631031036e-01, 3.830175998587e-08, 2.0526e+01, 9.9740e-03,
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stdout 2020-11-13T09:15:33.219365: 2DIAGNOSTIC, 828, -9.241631031036e-01, 3.828578343246e-08, 2.0536e+01, 1.0322e-02,
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stdout 2020-11-13T09:15:33.229534: 2DIAGNOSTIC, 829, -9.241631031036e-01, 3.823959460192e-08, 2.0546e+01, 9.9740e-03,
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stdout 2020-11-13T09:15:33.239703: 2DIAGNOSTIC, 830, -9.241631031036e-01, 3.820747451755e-08, 2.0556e+01, 9.9759e-03,
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stdout 2020-11-13T09:15:33.249976: 2DIAGNOSTIC, 831, -9.241631031036e-01, 3.818727734028e-08, 2.0566e+01, 1.0090e-02,
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stdout 2020-11-13T09:15:33.260156: 2DIAGNOSTIC, 832, -9.241631627083e-01, 3.819813088057e-08, 2.0576e+01, 9.9769e-03,
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stdout 2020-11-13T09:15:33.270324: 2DIAGNOSTIC, 833, -9.241631031036e-01, 3.819071636713e-08, 2.0586e+01, 9.9759e-03,
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stdout 2020-11-13T09:15:33.280495: 2DIAGNOSTIC, 834, -9.241631031036e-01, 3.816313665084e-08, 2.0596e+01, 9.9809e-03,
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stdout 2020-11-13T09:15:33.290794: 2DIAGNOSTIC, 835, -9.241631031036e-01, 3.811225113282e-08, 2.0606e+01, 1.0104e-02,
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stdout 2020-11-13T09:15:33.300962: 2DIAGNOSTIC, 836, -9.241629838943e-01, 3.801618930765e-08, 2.0616e+01, 9.9771e-03,
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stdout 2020-11-13T09:15:33.311138: 2DIAGNOSTIC, 837, -9.241629838943e-01, 3.792525049562e-08, 2.0626e+01, 9.9759e-03,
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stdout 2020-11-13T09:15:33.321316: 2DIAGNOSTIC, 838, -9.241630434990e-01, 3.786453817156e-08, 2.0636e+01, 9.9819e-03,
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stdout 2020-11-13T09:15:33.331488: 2DIAGNOSTIC, 839, -9.241630434990e-01, 3.781294211080e-08, 2.0646e+01, 9.9812e-03,
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stdout 2020-11-13T09:15:33.341996: 2DIAGNOSTIC, 840, -9.241630434990e-01, 3.777229551361e-08, 2.0657e+01, 1.0317e-02,
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stdout 2020-11-13T09:15:33.352262: 2DIAGNOSTIC, 841, -9.241630434990e-01, 3.774199797135e-08, 2.0667e+01, 1.0040e-02,
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stdout 2020-11-13T09:15:33.362448: 2DIAGNOSTIC, 842, -9.241630434990e-01, 3.774286128078e-08, 2.0677e+01, 9.9919e-03,
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stdout 2020-11-13T09:15:33.372616: 2DIAGNOSTIC, 843, -9.241630434990e-01, 3.772503731625e-08, 2.0687e+01, 9.9771e-03,
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stdout 2020-11-13T09:15:33.382783: 2DIAGNOSTIC, 844, -9.241630434990e-01, 3.770814060999e-08, 2.0697e+01, 9.9759e-03,
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stdout 2020-11-13T09:15:33.393094: 2DIAGNOSTIC, 845, -9.241630434990e-01, 3.769166667666e-08, 2.0707e+01, 1.0125e-02,
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stdout 2020-11-13T09:15:33.403260: 2DIAGNOSTIC, 846, -9.241630434990e-01, 3.762817613051e-08, 2.0717e+01, 9.9740e-03,
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stdout 2020-11-13T09:15:33.413427: 2DIAGNOSTIC, 847, -9.241632223129e-01, 3.762703215671e-08, 2.0727e+01, 9.9730e-03,
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stdout 2020-11-13T09:15:33.423599: 2DIAGNOSTIC, 848, -9.241632223129e-01, 3.763931033518e-08, 2.0737e+01, 9.9790e-03,
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stdout 2020-11-13T09:15:33.433761: 2DIAGNOSTIC, 849, -9.241632223129e-01, 3.764046851984e-08, 2.0747e+01, 9.9721e-03,
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stdout 2020-11-13T09:15:33.444085: 2DIAGNOSTIC, 850, -9.241632223129e-01, 3.762637490468e-08, 2.0757e+01, 1.0138e-02,
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stdout 2020-11-13T09:15:33.454387: 2DIAGNOSTIC, 851, -9.241632223129e-01, 3.759284084026e-08, 2.0767e+01, 1.0115e-02,
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stdout 2020-11-13T09:15:33.634236: 2DIAGNOSTIC, 868, -9.241629242897e-01, 3.663600622872e-08, 2.0943e+01, 9.9740e-03,
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stdout 2020-11-13T09:15:40.253436:DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
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stdout 2020-11-13T09:16:48.665134: 2DIAGNOSTIC, 35, -5.784693360329e-01, 8.962504693955e-07, 9.5827e+01, 7.2364e-01,
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stdout 2020-11-13T09:16:57.409928: 2DIAGNOSTIC, 47, -5.784693360329e-01, 6.729993629051e-07, 1.0457e+02, 7.1127e-01,
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stdout 2020-11-13T09:16:58.132906: 2DIAGNOSTIC, 48, -5.784692764282e-01, 6.548811484208e-07, 1.0529e+02, 7.2256e-01,
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stdout 2020-11-13T09:17:57.278291: 2DIAGNOSTIC, 130, -5.784697532654e-01, 2.446996347771e-07, 1.6440e+02, 7.2039e-01,
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stdout 2020-11-13T09:17:58.001226: 2DIAGNOSTIC, 131, -5.784697532654e-01, 2.428316179248e-07, 1.6512e+02, 7.2254e-01,
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stdout 2020-11-13T09:18:00.896336: 2DIAGNOSTIC, 135, -5.784697532654e-01, 2.356363921763e-07, 1.6802e+02, 7.3907e-01,
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stdout 2020-11-13T09:18:02.330983: 2DIAGNOSTIC, 137, -5.784697532654e-01, 2.321963421537e-07, 1.6945e+02, 7.1217e-01,
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stdout 2020-11-13T09:18:03.054334: 2DIAGNOSTIC, 138, -5.784697532654e-01, 2.305137059011e-07, 1.7017e+02, 7.2296e-01,
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stdout 2020-11-13T09:18:04.491849: 2DIAGNOSTIC, 140, -5.784697532654e-01, 2.272205534837e-07, 1.7161e+02, 7.1266e-01,
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stdout 2020-11-13T09:18:06.672285: 2DIAGNOSTIC, 143, -5.784697532654e-01, 2.224535506912e-07, 1.7379e+02, 7.2421e-01,
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stdout 2020-11-13T09:18:08.109892: 2DIAGNOSTIC, 145, -5.784697532654e-01, 2.193851429411e-07, 1.7523e+02, 7.2270e-01,
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stdout 2020-11-13T09:18:10.274544: 2DIAGNOSTIC, 148, -5.784697532654e-01, 2.149380122773e-07, 1.7739e+02, 7.2102e-01,
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stdout 2020-11-13T09:18:11.717826: 2DIAGNOSTIC, 150, -5.784697532654e-01, 2.120720949961e-07, 1.7883e+02, 7.2109e-01,
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stdout 2020-11-13T09:18:12.429183: 2DIAGNOSTIC, 151, -5.784697532654e-01, 2.106676078029e-07, 1.7954e+02, 7.1094e-01,
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stdout 2020-11-13T09:18:48.412790: 2DIAGNOSTIC, 201, -5.784697532654e-01, 1.582616278029e-07, 2.1551e+02, 7.1325e-01,
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stdout 2020-11-13T09:19:07.130191: 2DIAGNOSTIC, 227, -5.784697532654e-01, 1.401344178475e-07, 2.3421e+02, 7.1920e-01,
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stdout 2020-11-13T09:19:12.894081: 2DIAGNOSTIC, 235, -5.784697532654e-01, 1.353637912871e-07, 2.3998e+02, 7.2120e-01,
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stdout 2020-11-13T09:19:13.616569: 2DIAGNOSTIC, 236, -5.784697532654e-01, 1.347902127691e-07, 2.4070e+02, 7.2209e-01,
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stdout 2020-11-13T09:19:14.329349: 2DIAGNOSTIC, 237, -5.784697532654e-01, 1.342214659417e-07, 2.4141e+02, 7.1240e-01,
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stdout 2020-11-13T09:19:15.772415: 2DIAGNOSTIC, 239, -5.784697532654e-01, 1.330982541958e-07, 2.4285e+02, 7.2116e-01,
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stdout 2020-11-13T09:19:16.485489: 2DIAGNOSTIC, 240, -5.784697532654e-01, 1.325436613797e-07, 2.4356e+02, 7.1268e-01,
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stdout 2020-11-13T09:19:18.650298: 2DIAGNOSTIC, 243, -5.784697532654e-01, 1.309072956701e-07, 2.4573e+02, 7.2230e-01,
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stdout 2020-11-13T09:19:21.519438: 2DIAGNOSTIC, 247, -5.784697532654e-01, 1.287873061528e-07, 2.4860e+02, 7.1315e-01,
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stdout 2020-11-13T09:19:22.960471: 2DIAGNOSTIC, 249, -5.784697532654e-01, 1.277528554056e-07, 2.5004e+02, 7.1972e-01,
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stdout 2020-11-13T09:19:23.682875: 2DIAGNOSTIC, 250, -5.784697532654e-01, 1.272418330700e-07, 2.5076e+02, 7.2200e-01,
201113-09:19:30,839 nipype.interface INFO:
stdout 2020-11-13T09:19:30.839368:DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201113-09:19:30,839 nipype.interface INFO:
stdout 2020-11-13T09:19:30.839736: 2DIAGNOSTIC, 1, -4.846650063992e-01, inf, 2.5791e+02, 7.1565e+00,
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stdout 2020-11-13T09:19:35.412121: 2DIAGNOSTIC, 2, -4.848367273808e-01, inf, 2.6249e+02, 4.5722e+00,
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stdout 2020-11-13T09:19:42.192615: 2DIAGNOSTIC, 3, -4.848572909832e-01, inf, 2.6927e+02, 6.7801e+00,
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stdout 2020-11-13T09:19:48.226351: 2DIAGNOSTIC, 4, -4.848559498787e-01, inf, 2.7530e+02, 6.0333e+00,
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stdout 2020-11-13T09:19:52.068822: 2DIAGNOSTIC, 5, -4.848564863205e-01, inf, 2.7914e+02, 3.8419e+00,
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stdout 2020-11-13T09:19:58.099320: 2DIAGNOSTIC, 6, -4.848552048206e-01, inf, 2.8517e+02, 6.0301e+00,
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stdout 2020-11-13T09:20:02.697780: 2DIAGNOSTIC, 7, -4.848553836346e-01, inf, 2.8977e+02, 4.5981e+00,
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stdout 2020-11-13T09:20:11.875702: 2DIAGNOSTIC, 9, -4.848545789719e-01, inf, 2.9895e+02, 4.5851e+00,
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stdout 2020-11-13T09:20:16.450142: 2DIAGNOSTIC, 10, -4.848545193672e-01, 1.506860735390e-05, 3.0352e+02, 4.5740e+00,
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stdout 2020-11-13T09:20:21.027437: 2DIAGNOSTIC, 11, -4.848547577858e-01, 3.628814056356e-06, 3.0810e+02, 4.5769e+00,
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stdout 2020-11-13T09:20:25.609661: 2DIAGNOSTIC, 12, -4.848552048206e-01, 2.410617298665e-06, 3.1268e+02, 4.5818e+00,
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stdout 2020-11-13T09:20:30.179751: 2DIAGNOSTIC, 13, -4.848552048206e-01, 2.329913058929e-06, 3.1725e+02, 4.5697e+00,
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stdout 2020-11-13T09:20:34.762269: 2DIAGNOSTIC, 14, -4.848554432392e-01, 2.224605850643e-06, 3.2183e+02, 4.5821e+00,
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stdout 2020-11-13T09:20:39.337073: 2DIAGNOSTIC, 15, -4.848550558090e-01, 2.144610107280e-06, 3.2641e+02, 4.5744e+00,
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stdout 2020-11-13T09:20:45.381477: 2DIAGNOSTIC, 16, -4.848556816578e-01, 2.048154328804e-06, 3.3245e+02, 6.0440e+00,
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stdout 2020-11-13T09:20:49.959879: 2DIAGNOSTIC, 17, -4.848551452160e-01, 1.944895529959e-06, 3.3703e+02, 4.5780e+00,
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stdout 2020-11-13T09:20:55.262389: 2DIAGNOSTIC, 18, -4.848554730415e-01, 1.834328600125e-06, 3.4233e+02, 5.3001e+00,
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stdout 2020-11-13T09:20:59.834588: 2DIAGNOSTIC, 19, -4.848552644253e-01, 1.720104705782e-06, 3.4690e+02, 4.5717e+00,
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stdout 2020-11-13T09:21:04.412834: 2DIAGNOSTIC, 20, -4.848546981812e-01, 1.594787477188e-06, 3.5148e+02, 4.5778e+00,
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stdout 2020-11-13T09:21:08.993725: 2DIAGNOSTIC, 21, -4.848553538322e-01, 1.506048761257e-06, 3.5606e+02, 4.5805e+00,
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stdout 2020-11-13T09:21:13.578069: 2DIAGNOSTIC, 22, -4.848554730415e-01, 1.440562641619e-06, 3.6064e+02, 4.5839e+00,
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stdout 2020-11-13T09:21:18.151442: 2DIAGNOSTIC, 23, -4.848555922508e-01, 1.384088136547e-06, 3.6522e+02, 4.5730e+00,
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stdout 2020-11-13T09:21:22.729374: 2DIAGNOSTIC, 24, -4.848555326462e-01, 1.337154458270e-06, 3.6979e+02, 4.5775e+00,
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stdout 2020-11-13T09:21:29.503040: 2DIAGNOSTIC, 25, -4.848556518555e-01, 1.286442397941e-06, 3.7657e+02, 6.7733e+00,
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stdout 2020-11-13T09:21:34.078872: 2DIAGNOSTIC, 26, -4.848554432392e-01, 1.247817976946e-06, 3.8114e+02, 4.5754e+00,
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stdout 2020-11-13T09:21:38.656514: 2DIAGNOSTIC, 27, -4.848554730415e-01, 1.198336235575e-06, 3.8572e+02, 4.5772e+00,
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stdout 2020-11-13T09:21:49.263825: 2DIAGNOSTIC, 29, -4.848554730415e-01, 1.110513039748e-06, 3.9633e+02, 6.0304e+00,
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stdout 2020-11-13T09:21:53.842358: 2DIAGNOSTIC, 30, -4.848554730415e-01, 1.057368308466e-06, 4.0090e+02, 4.5781e+00,
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stdout 2020-11-13T09:21:58.416972: 2DIAGNOSTIC, 31, -4.848554134369e-01, 1.019190676743e-06, 4.0548e+02, 4.5742e+00,
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stdout 2020-11-13T09:22:03.009779: 2DIAGNOSTIC, 32, -4.848553836346e-01, 9.857575378192e-07, 4.1007e+02, 4.5903e+00,
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stdout 2020-11-13T09:22:07.604218: 2DIAGNOSTIC, 33, -4.848553836346e-01, 9.572943326930e-07, 4.1466e+02, 4.5940e+00,
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stdout 2020-11-13T09:22:12.186777: 2DIAGNOSTIC, 34, -4.848551452160e-01, 9.258421869163e-07, 4.1924e+02, 4.5822e+00,
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stdout 2020-11-13T09:22:16.764235: 2DIAGNOSTIC, 35, -4.848551452160e-01, 8.992667517305e-07, 4.2382e+02, 4.5770e+00,
201113-09:22:21,338 nipype.interface INFO:
stdout 2020-11-13T09:22:21.338865: 2DIAGNOSTIC, 36, -4.848551452160e-01, 8.716535830899e-07, 4.2840e+02, 4.5742e+00,
201113-09:22:25,924 nipype.interface INFO:
stdout 2020-11-13T09:22:25.924348: 2DIAGNOSTIC, 37, -4.848551452160e-01, 8.472093782075e-07, 4.3298e+02, 4.5851e+00,
201113-09:22:30,498 nipype.interface INFO:
stdout 2020-11-13T09:22:30.498323: 2DIAGNOSTIC, 38, -4.848551452160e-01, 8.224080261243e-07, 4.3755e+02, 4.5736e+00,
201113-09:22:35,81 nipype.interface INFO:
stdout 2020-11-13T09:22:35.081444: 2DIAGNOSTIC, 39, -4.848551452160e-01, 8.030099252210e-07, 4.4214e+02, 4.5825e+00,
201113-09:22:39,665 nipype.interface INFO:
stdout 2020-11-13T09:22:39.665863: 2DIAGNOSTIC, 40, -4.848551452160e-01, 7.858199069233e-07, 4.4672e+02, 4.5840e+00,
201113-09:22:44,244 nipype.interface INFO:
stdout 2020-11-13T09:22:44.243975: 2DIAGNOSTIC, 41, -4.848551452160e-01, 7.694733881181e-07, 4.5130e+02, 4.5778e+00,
201113-09:22:48,822 nipype.interface INFO:
stdout 2020-11-13T09:22:48.822894: 2DIAGNOSTIC, 42, -4.848551452160e-01, 7.540590445387e-07, 4.5588e+02, 4.5785e+00,
201113-09:22:53,398 nipype.interface INFO:
stdout 2020-11-13T09:22:53.398010: 2DIAGNOSTIC, 43, -4.848551452160e-01, 7.397727586067e-07, 4.6045e+02, 4.5747e+00,
201113-09:22:57,977 nipype.interface INFO:
stdout 2020-11-13T09:22:57.977894: 2DIAGNOSTIC, 44, -4.848551452160e-01, 7.229596121761e-07, 4.6503e+02, 4.5795e+00,
201113-09:23:02,554 nipype.interface INFO:
stdout 2020-11-13T09:23:02.554500: 2DIAGNOSTIC, 45, -4.848551452160e-01, 7.068936724863e-07, 4.6961e+02, 4.5762e+00,
201113-09:23:07,137 nipype.interface INFO:
stdout 2020-11-13T09:23:07.137802: 2DIAGNOSTIC, 46, -4.848551452160e-01, 6.915262815710e-07, 4.7419e+02, 4.5829e+00,
201113-09:23:11,725 nipype.interface INFO:
stdout 2020-11-13T09:23:11.725832: 2DIAGNOSTIC, 47, -4.848549067974e-01, 6.738394517924e-07, 4.7878e+02, 4.5856e+00,
201113-09:23:16,297 nipype.interface INFO:
stdout 2020-11-13T09:23:16.297141: 2DIAGNOSTIC, 48, -4.848549067974e-01, 6.572575443897e-07, 4.8335e+02, 4.5708e+00,
201113-09:23:20,875 nipype.interface INFO:
stdout 2020-11-13T09:23:20.875085: 2DIAGNOSTIC, 49, -4.848549067974e-01, 6.418408133868e-07, 4.8792e+02, 4.5775e+00,
201113-09:23:25,447 nipype.interface INFO:
stdout 2020-11-13T09:23:25.447566: 2DIAGNOSTIC, 50, -4.848549067974e-01, 6.276994213295e-07, 4.9250e+02, 4.5721e+00,
201113-09:23:30,25 nipype.interface INFO:
stdout 2020-11-13T09:23:30.025792: 2DIAGNOSTIC, 51, -4.848551154137e-01, 6.173361271067e-07, 4.9707e+02, 4.5778e+00,
201113-09:23:34,603 nipype.interface INFO:
stdout 2020-11-13T09:23:34.603419: 2DIAGNOSTIC, 52, -4.848551154137e-01, 6.079627610234e-07, 5.0165e+02, 4.5772e+00,
201113-09:23:39,182 nipype.interface INFO:
stdout 2020-11-13T09:23:39.181991: 2DIAGNOSTIC, 53, -4.848551154137e-01, 5.993427407702e-07, 5.0623e+02, 4.5782e+00,
201113-09:23:43,768 nipype.interface INFO:
stdout 2020-11-13T09:23:43.768769: 2DIAGNOSTIC, 54, -4.848551154137e-01, 5.911181801821e-07, 5.1082e+02, 4.5863e+00,
201113-09:23:48,342 nipype.interface INFO:
stdout 2020-11-13T09:23:48.341989: 2DIAGNOSTIC, 55, -4.848551154137e-01, 5.829577389704e-07, 5.1539e+02, 4.5728e+00,
201113-09:23:52,916 nipype.interface INFO:
stdout 2020-11-13T09:23:52.916856: 2DIAGNOSTIC, 56, -4.848551154137e-01, 5.746823603658e-07, 5.1996e+02, 4.5745e+00,
201113-09:23:57,488 nipype.interface INFO:
stdout 2020-11-13T09:23:57.488390: 2DIAGNOSTIC, 57, -4.848551154137e-01, 5.635989737129e-07, 5.2453e+02, 4.5711e+00,
201113-09:24:02,78 nipype.interface INFO:
stdout 2020-11-13T09:24:02.078158: 2DIAGNOSTIC, 58, -4.848551154137e-01, 5.524009338842e-07, 5.2912e+02, 4.5894e+00,
201113-09:24:06,665 nipype.interface INFO:
stdout 2020-11-13T09:24:06.665369: 2DIAGNOSTIC, 59, -4.848551154137e-01, 5.412276777861e-07, 5.3371e+02, 4.5868e+00,
201113-09:24:11,254 nipype.interface INFO:
stdout 2020-11-13T09:24:11.254418: 2DIAGNOSTIC, 60, -4.848551154137e-01, 5.301690180204e-07, 5.3830e+02, 4.5887e+00,
201113-09:24:15,838 nipype.interface INFO:
stdout 2020-11-13T09:24:15.838070: 2DIAGNOSTIC, 61, -4.848551154137e-01, 5.214776592766e-07, 5.4288e+02, 4.5831e+00,
201113-09:24:20,413 nipype.interface INFO:
stdout 2020-11-13T09:24:20.412963: 2DIAGNOSTIC, 62, -4.848551154137e-01, 5.130667091180e-07, 5.4746e+02, 4.5745e+00,
201113-09:24:24,992 nipype.interface INFO:
stdout 2020-11-13T09:24:24.992739: 2DIAGNOSTIC, 63, -4.848551154137e-01, 5.049227524978e-07, 5.5204e+02, 4.5794e+00,
201113-09:24:29,577 nipype.interface INFO:
stdout 2020-11-13T09:24:29.577788: 2DIAGNOSTIC, 64, -4.848551154137e-01, 4.970332838639e-07, 5.5662e+02, 4.5846e+00,
201113-09:24:34,145 nipype.interface INFO:
stdout 2020-11-13T09:24:34.145866: 2DIAGNOSTIC, 65, -4.848551154137e-01, 4.893865366284e-07, 5.6119e+02, 4.5677e+00,
201113-09:24:38,721 nipype.interface INFO:
stdout 2020-11-13T09:24:38.721520: 2DIAGNOSTIC, 66, -4.848551154137e-01, 4.819715400117e-07, 5.6576e+02, 4.5753e+00,
201113-09:24:43,299 nipype.interface INFO:
stdout 2020-11-13T09:24:43.299874: 2DIAGNOSTIC, 67, -4.848551154137e-01, 4.747778916681e-07, 5.7034e+02, 4.5780e+00,
201113-09:24:47,879 nipype.interface INFO:
stdout 2020-11-13T09:24:47.879741: 2DIAGNOSTIC, 68, -4.848551154137e-01, 4.677958429511e-07, 5.7492e+02, 4.5794e+00,
201113-09:24:52,448 nipype.interface INFO:
stdout 2020-11-13T09:24:52.448804: 2DIAGNOSTIC, 69, -4.848548471928e-01, 4.587376167819e-07, 5.7949e+02, 4.5686e+00,
201113-09:24:57,33 nipype.interface INFO:
stdout 2020-11-13T09:24:57.033896: 2DIAGNOSTIC, 70, -4.848548471928e-01, 4.502221031544e-07, 5.8407e+02, 4.5847e+00,
201113-09:25:01,624 nipype.interface INFO:
stdout 2020-11-13T09:25:01.624512: 2DIAGNOSTIC, 71, -4.848548471928e-01, 4.423256143582e-07, 5.8866e+02, 4.5902e+00,
201113-09:25:06,197 nipype.interface INFO:
stdout 2020-11-13T09:25:06.197309: 2DIAGNOSTIC, 72, -4.848548471928e-01, 4.351630309429e-07, 5.9324e+02, 4.5725e+00,
201113-09:25:10,798 nipype.interface INFO:
stdout 2020-11-13T09:25:10.798105: 2DIAGNOSTIC, 73, -4.848548471928e-01, 4.288457944313e-07, 5.9784e+02, 4.6004e+00,
201113-09:25:15,373 nipype.interface INFO:
stdout 2020-11-13T09:25:15.373399: 2DIAGNOSTIC, 74, -4.848548471928e-01, 4.234017580984e-07, 6.0241e+02, 4.5749e+00,
201113-09:25:19,950 nipype.interface INFO:
stdout 2020-11-13T09:25:19.950497: 2DIAGNOSTIC, 75, -4.848548471928e-01, 4.187346576146e-07, 6.0699e+02, 4.5765e+00,
201113-09:25:24,529 nipype.interface INFO:
stdout 2020-11-13T09:25:24.529707: 2DIAGNOSTIC, 76, -4.848548471928e-01, 4.146778564973e-07, 6.1157e+02, 4.5788e+00,
201113-09:25:29,107 nipype.interface INFO:
stdout 2020-11-13T09:25:29.107482: 2DIAGNOSTIC, 77, -4.848548471928e-01, 4.110760016829e-07, 6.1614e+02, 4.5773e+00,
201113-09:25:33,690 nipype.interface INFO:
stdout 2020-11-13T09:25:33.690409: 2DIAGNOSTIC, 78, -4.848548471928e-01, 4.078214885794e-07, 6.2073e+02, 4.5825e+00,
201113-09:25:38,267 nipype.interface INFO:
stdout 2020-11-13T09:25:38.267914: 2DIAGNOSTIC, 79, -4.848548471928e-01, 4.026591682305e-07, 6.2530e+02, 4.5771e+00,
201113-09:25:42,856 nipype.interface INFO:
stdout 2020-11-13T09:25:42.856385: 2DIAGNOSTIC, 80, -4.848548471928e-01, 3.976259108640e-07, 6.2989e+02, 4.5881e+00,
201113-09:25:47,433 nipype.interface INFO:
stdout 2020-11-13T09:25:47.433002: 2DIAGNOSTIC, 81, -4.848548471928e-01, 3.927169132112e-07, 6.3447e+02, 4.5762e+00,
201113-09:25:52,15 nipype.interface INFO:
stdout 2020-11-13T09:25:52.015865: 2DIAGNOSTIC, 82, -4.848548471928e-01, 3.879276562202e-07, 6.3905e+02, 4.5824e+00,
201113-09:25:56,598 nipype.interface INFO:
stdout 2020-11-13T09:25:56.598760: 2DIAGNOSTIC, 83, -4.848548471928e-01, 3.832538197912e-07, 6.4363e+02, 4.5825e+00,
201113-09:26:01,183 nipype.interface INFO:
stdout 2020-11-13T09:26:01.183825: 2DIAGNOSTIC, 84, -4.848548471928e-01, 3.786912543546e-07, 6.4822e+02, 4.5847e+00,
201113-09:26:05,762 nipype.interface INFO:
stdout 2020-11-13T09:26:05.762122: 2DIAGNOSTIC, 85, -4.848548471928e-01, 3.742360377146e-07, 6.5280e+02, 4.5779e+00,
201113-09:26:10,351 nipype.interface INFO:
stdout 2020-11-13T09:26:10.351419: 2DIAGNOSTIC, 86, -4.848548471928e-01, 3.698844466271e-07, 6.5739e+02, 4.5889e+00,
201113-09:26:14,929 nipype.interface INFO:
stdout 2020-11-13T09:26:14.929398: 2DIAGNOSTIC, 87, -4.848548471928e-01, 3.656328715351e-07, 6.6196e+02, 4.5776e+00,
201113-09:26:19,503 nipype.interface INFO:
stdout 2020-11-13T09:26:19.503202: 2DIAGNOSTIC, 88, -4.848548471928e-01, 3.614779302552e-07, 6.6654e+02, 4.5734e+00,
201113-09:26:24,79 nipype.interface INFO:
stdout 2020-11-13T09:26:24.079153: 2DIAGNOSTIC, 89, -4.848548471928e-01, 3.574163827125e-07, 6.7111e+02, 4.5754e+00,
201113-09:26:28,663 nipype.interface INFO:
stdout 2020-11-13T09:26:28.663533: 2DIAGNOSTIC, 90, -4.848548471928e-01, 3.534450740972e-07, 6.7570e+02, 4.5840e+00,
201113-09:26:33,234 nipype.interface INFO:
stdout 2020-11-13T09:26:33.234025: 2DIAGNOSTIC, 91, -4.848548471928e-01, 3.495610485515e-07, 6.8027e+02, 4.5702e+00,
201113-09:26:37,809 nipype.interface INFO:
stdout 2020-11-13T09:26:37.809656: 2DIAGNOSTIC, 92, -4.848548471928e-01, 3.457614354829e-07, 6.8484e+02, 4.5752e+00,
201113-09:26:42,389 nipype.interface INFO:
stdout 2020-11-13T09:26:42.389673: 2DIAGNOSTIC, 93, -4.848548471928e-01, 3.420435632506e-07, 6.8942e+02, 4.5796e+00,
201113-09:26:46,966 nipype.interface INFO:
stdout 2020-11-13T09:26:46.966015: 2DIAGNOSTIC, 94, -4.848548471928e-01, 3.384047886357e-07, 6.9400e+02, 4.5759e+00,
201113-09:26:51,534 nipype.interface INFO:
stdout 2020-11-13T09:26:51.534831: 2DIAGNOSTIC, 95, -4.848548471928e-01, 3.348426105276e-07, 6.9856e+02, 4.5684e+00,
201113-09:26:56,117 nipype.interface INFO:
stdout 2020-11-13T09:26:56.117568: 2DIAGNOSTIC, 96, -4.848548471928e-01, 3.313546699246e-07, 7.0315e+02, 4.5823e+00,
201113-09:27:00,694 nipype.interface INFO:
stdout 2020-11-13T09:27:00.694422: 2DIAGNOSTIC, 97, -4.848548471928e-01, 3.279386078248e-07, 7.0772e+02, 4.5765e+00,
201113-09:27:05,270 nipype.interface INFO:
stdout 2020-11-13T09:27:05.270658: 2DIAGNOSTIC, 98, -4.848548471928e-01, 3.245922925998e-07, 7.1230e+02, 4.5759e+00,
201113-09:27:09,862 nipype.interface INFO:
stdout 2020-11-13T09:27:09.862521: 2DIAGNOSTIC, 99, -4.848548471928e-01, 3.213135642000e-07, 7.1689e+02, 4.5915e+00,
201113-09:27:14,433 nipype.interface INFO:
stdout 2020-11-13T09:27:14.433853: 2DIAGNOSTIC, 100, -4.848549664021e-01, 3.187991808318e-07, 7.2146e+02, 4.5709e+00,
201113-09:27:14,434 nipype.interface INFO:
stdout 2020-11-13T09:27:14.434326: Elapsed time (stage 0): 7.2462e+02
201113-09:27:14,434 nipype.interface INFO:
stdout 2020-11-13T09:27:14.434479:
201113-09:27:14,441 nipype.interface INFO:
stdout 2020-11-13T09:27:14.440981:
201113-09:27:14,441 nipype.interface INFO:
stdout 2020-11-13T09:27:14.441158:Stage 1
201113-09:27:14,441 nipype.interface INFO:
stdout 2020-11-13T09:27:14.441301: iterations = 1000x500x250x100
201113-09:27:14,441 nipype.interface INFO:
stdout 2020-11-13T09:27:14.441441: convergence threshold = 1.0000e-08
201113-09:27:14,441 nipype.interface INFO:
stdout 2020-11-13T09:27:14.441575: convergence window size = 10
201113-09:27:14,441 nipype.interface INFO:
stdout 2020-11-13T09:27:14.441704: number of levels = 4
201113-09:27:14,441 nipype.interface INFO:
stdout 2020-11-13T09:27:14.441861: using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00)
201113-09:27:17,146 nipype.interface INFO:
stdout 2020-11-13T09:27:17.146738: preprocessing: winsorizing the image intensities
201113-09:27:17,148 nipype.interface INFO:
stdout 2020-11-13T09:27:17.146738: preprocessing: histogram matching the images
201113-09:27:17,149 nipype.interface INFO:
stdout 2020-11-13T09:27:17.149270: Shrink factors (level 1 out of 4): [8, 8, 8]
201113-09:27:17,149 nipype.interface INFO:
stdout 2020-11-13T09:27:17.149426: Shrink factors (level 2 out of 4): [4, 4, 4]
201113-09:27:17,149 nipype.interface INFO:
stdout 2020-11-13T09:27:17.149563: Shrink factors (level 3 out of 4): [2, 2, 2]
201113-09:27:17,149 nipype.interface INFO:
stdout 2020-11-13T09:27:17.149695: Shrink factors (level 4 out of 4): [1, 1, 1]
201113-09:27:17,149 nipype.interface INFO:
stdout 2020-11-13T09:27:17.149832: smoothing sigmas per level: [4, 2, 1, 0]
201113-09:27:17,149 nipype.interface INFO:
stdout 2020-11-13T09:27:17.149974: regular sampling (percentage = 2.5000e-01)
201113-09:27:17,154 nipype.interface INFO:
stdout 2020-11-13T09:27:17.154884:
201113-09:27:17,155 nipype.interface INFO:
stdout 2020-11-13T09:27:17.155061:*** Running AffineTransform registration ***
201113-09:27:17,155 nipype.interface INFO:
stdout 2020-11-13T09:27:17.155205:
201113-09:27:29,287 nipype.interface INFO:
stdout 2020-11-13T09:27:29.287833:DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201113-09:27:29,288 nipype.interface INFO:
stdout 2020-11-13T09:27:29.288214: 2DIAGNOSTIC, 1, -9.135907888412e-01, inf, 1.2135e+01, 1.2135e+01,
201113-09:27:29,298 nipype.interface INFO:
stdout 2020-11-13T09:27:29.298100: 2DIAGNOSTIC, 2, -9.154818654060e-01, inf, 1.2145e+01, 9.7110e-03,
201113-09:27:29,308 nipype.interface INFO:
stdout 2020-11-13T09:27:29.307981: 2DIAGNOSTIC, 3, -9.182704091072e-01, inf, 1.2155e+01, 9.7020e-03,
201113-09:27:29,318 nipype.interface INFO:
stdout 2020-11-13T09:27:29.317983: 2DIAGNOSTIC, 4, -9.221915602684e-01, inf, 1.2165e+01, 9.8200e-03,
201113-09:27:29,328 nipype.interface INFO:
stdout 2020-11-13T09:27:29.328166: 2DIAGNOSTIC, 5, -9.274423718452e-01, inf, 1.2175e+01, 1.0002e-02,
201113-09:27:29,338 nipype.interface INFO:
stdout 2020-11-13T09:27:29.338081: 2DIAGNOSTIC, 6, -9.341105818748e-01, inf, 1.2184e+01, 9.7370e-03,
201113-09:27:29,348 nipype.interface INFO:
stdout 2020-11-13T09:27:29.347995: 2DIAGNOSTIC, 7, -9.413392543793e-01, inf, 1.2194e+01, 9.7401e-03,
201113-09:27:29,363 nipype.interface INFO:
stdout 2020-11-13T09:27:29.363103: 2DIAGNOSTIC, 8, -9.507061839104e-01, inf, 1.2209e+01, 1.4927e-02,
201113-09:27:29,374 nipype.interface INFO:
stdout 2020-11-13T09:27:29.374666: 2DIAGNOSTIC, 9, -9.517903923988e-01, inf, 1.2220e+01, 1.1394e-02,
201113-09:27:29,386 nipype.interface INFO:
stdout 2020-11-13T09:27:29.386426: 2DIAGNOSTIC, 10, -9.524520635605e-01, 3.153708064929e-03, 1.2232e+01, 1.1586e-02,
201113-09:27:29,396 nipype.interface INFO:
stdout 2020-11-13T09:27:29.396489: 2DIAGNOSTIC, 11, -9.537288546562e-01, 2.793412655592e-03, 1.2242e+01, 9.8739e-03,
201113-09:27:29,408 nipype.interface INFO:
stdout 2020-11-13T09:27:29.408261: 2DIAGNOSTIC, 12, -9.566041827202e-01, 2.360932296142e-03, 1.2254e+01, 1.1588e-02,
201113-09:27:29,418 nipype.interface INFO:
stdout 2020-11-13T09:27:29.418496: 2DIAGNOSTIC, 13, -9.578907489777e-01, 1.874180976301e-03, 1.2264e+01, 1.0037e-02,
201113-09:27:29,432 nipype.interface INFO:
stdout 2020-11-13T09:27:29.432064: 2DIAGNOSTIC, 14, -9.589687585831e-01, 1.396703650244e-03, 1.2277e+01, 1.3384e-02,
201113-09:27:29,443 nipype.interface INFO:
stdout 2020-11-13T09:27:29.443822: 2DIAGNOSTIC, 15, -9.607193470001e-01, 9.990640683100e-04, 1.2289e+01, 1.1573e-02,
201113-09:27:29,455 nipype.interface INFO:
stdout 2020-11-13T09:27:29.455899: 2DIAGNOSTIC, 16, -9.630290865898e-01, 7.275366224349e-04, 1.2300e+01, 1.1890e-02,
201113-09:27:29,467 nipype.interface INFO:
stdout 2020-11-13T09:27:29.467939: 2DIAGNOSTIC, 17, -9.630920886993e-01, 5.452402401716e-04, 1.2312e+01, 1.1848e-02,
201113-09:27:29,479 nipype.interface INFO:
stdout 2020-11-13T09:27:29.479711: 2DIAGNOSTIC, 18, -9.631208777428e-01, 4.907572292723e-04, 1.2324e+01, 1.1578e-02,
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stdout 2020-11-13T09:27:37.477018: 2DIAGNOSTIC, 692, -9.635665416718e-01, 4.599204572742e-08, 2.0196e+01, 1.1532e-02,
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stdout 2020-11-13T09:27:37.500465: 2DIAGNOSTIC, 694, -9.635665416718e-01, 4.585943713664e-08, 2.0219e+01, 1.1535e-02,
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stdout 2020-11-13T09:27:37.512306: 2DIAGNOSTIC, 695, -9.635665416718e-01, 4.579341705835e-08, 2.0231e+01, 1.1660e-02,
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stdout 2020-11-13T09:27:37.524023: 2DIAGNOSTIC, 696, -9.635665416718e-01, 4.572758882659e-08, 2.0242e+01, 1.1532e-02,
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stdout 2020-11-13T09:27:37.547513: 2DIAGNOSTIC, 698, -9.635665416718e-01, 4.559649369185e-08, 2.0265e+01, 1.1588e-02,
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stdout 2020-11-13T09:27:37.559261: 2DIAGNOSTIC, 699, -9.635665416718e-01, 4.553123034157e-08, 2.0277e+01, 1.1566e-02,
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stdout 2020-11-13T09:27:37.576839: 2DIAGNOSTIC, 700, -9.635665416718e-01, 4.546615173240e-08, 2.0294e+01, 1.7383e-02,
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stdout 2020-11-13T09:27:37.588576: 2DIAGNOSTIC, 701, -9.635665416718e-01, 4.540126141706e-08, 2.0306e+01, 1.1544e-02,
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stdout 2020-11-13T09:27:37.600296: 2DIAGNOSTIC, 702, -9.635665416718e-01, 4.533655229011e-08, 2.0317e+01, 1.1534e-02,
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stdout 2020-11-13T09:27:37.612104: 2DIAGNOSTIC, 703, -9.635665416718e-01, 4.527202790428e-08, 2.0329e+01, 1.1626e-02,
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stdout 2020-11-13T09:27:37.623816: 2DIAGNOSTIC, 704, -9.635665416718e-01, 4.520768825955e-08, 2.0340e+01, 1.1531e-02,
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stdout 2020-11-13T09:27:37.635529: 2DIAGNOSTIC, 705, -9.635665416718e-01, 4.514353335594e-08, 2.0352e+01, 1.1531e-02,
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stdout 2020-11-13T09:27:37.647245: 2DIAGNOSTIC, 706, -9.635665416718e-01, 4.507955608801e-08, 2.0363e+01, 1.1535e-02,
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stdout 2020-11-13T09:27:37.659006: 2DIAGNOSTIC, 707, -9.635665416718e-01, 4.501576356120e-08, 2.0375e+01, 1.1579e-02,
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stdout 2020-11-13T09:27:37.670836: 2DIAGNOSTIC, 708, -9.635665416718e-01, 4.495214867006e-08, 2.0387e+01, 1.1644e-02,
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stdout 2020-11-13T09:27:37.682547: 2DIAGNOSTIC, 709, -9.635665416718e-01, 4.488871496733e-08, 2.0398e+01, 1.1527e-02,
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stdout 2020-11-13T09:27:37.694267: 2DIAGNOSTIC, 710, -9.635665416718e-01, 4.482545890028e-08, 2.0410e+01, 1.1540e-02,
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stdout 2020-11-13T09:27:37.706243: 2DIAGNOSTIC, 711, -9.635665416718e-01, 4.476238046891e-08, 2.0422e+01, 1.1795e-02,
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stdout 2020-11-13T09:27:37.718075: 2DIAGNOSTIC, 712, -9.635665416718e-01, 4.469947967323e-08, 2.0433e+01, 1.1650e-02,
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stdout 2020-11-13T09:27:37.729787: 2DIAGNOSTIC, 713, -9.635665416718e-01, 4.463675651323e-08, 2.0445e+01, 1.1533e-02,
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stdout 2020-11-13T09:27:37.741502: 2DIAGNOSTIC, 714, -9.635665416718e-01, 4.457420743620e-08, 2.0456e+01, 1.1534e-02,
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stdout 2020-11-13T09:27:37.753263: 2DIAGNOSTIC, 715, -9.635665416718e-01, 4.451183599485e-08, 2.0468e+01, 1.1578e-02,
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stdout 2020-11-13T09:27:37.765086: 2DIAGNOSTIC, 716, -9.635665416718e-01, 4.444963863648e-08, 2.0479e+01, 1.1642e-02,
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stdout 2020-11-13T09:27:37.776804: 2DIAGNOSTIC, 717, -9.635665416718e-01, 4.438761180836e-08, 2.0491e+01, 1.1536e-02,
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stdout 2020-11-13T09:27:37.788533: 2DIAGNOSTIC, 718, -9.635665416718e-01, 4.432575906321e-08, 2.0503e+01, 1.1548e-02,
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stdout 2020-11-13T09:27:37.800250: 2DIAGNOSTIC, 719, -9.635665416718e-01, 4.426408040104e-08, 2.0514e+01, 1.1536e-02,
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stdout 2020-11-13T09:27:37.812067: 2DIAGNOSTIC, 720, -9.635665416718e-01, 4.420257226911e-08, 2.0526e+01, 1.1633e-02,
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stdout 2020-11-13T09:27:37.823767: 2DIAGNOSTIC, 721, -9.635665416718e-01, 4.414123466745e-08, 2.0537e+01, 1.1519e-02,
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stdout 2020-11-13T09:27:37.835745: 2DIAGNOSTIC, 722, -9.635665416718e-01, 4.408006404333e-08, 2.0549e+01, 1.1583e-02,
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stdout 2020-11-13T09:27:37.847461: 2DIAGNOSTIC, 723, -9.635665416718e-01, 4.401906750218e-08, 2.0560e+01, 1.1533e-02,
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stdout 2020-11-13T09:27:37.859222: 2DIAGNOSTIC, 724, -9.635665416718e-01, 4.395823793857e-08, 2.0572e+01, 1.1579e-02,
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stdout 2020-11-13T09:27:37.871052: 2DIAGNOSTIC, 725, -9.635665416718e-01, 4.389757535250e-08, 2.0584e+01, 1.1642e-02,
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stdout 2020-11-13T09:27:37.882767: 2DIAGNOSTIC, 726, -9.635665416718e-01, 4.383707974398e-08, 2.0595e+01, 1.1534e-02,
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stdout 2020-11-13T09:27:37.894496: 2DIAGNOSTIC, 727, -9.635665416718e-01, 4.377675111300e-08, 2.0607e+01, 1.1543e-02,
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stdout 2020-11-13T09:27:37.906211: 2DIAGNOSTIC, 728, -9.635665416718e-01, 4.371658945956e-08, 2.0618e+01, 1.1529e-02,
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stdout 2020-11-13T09:27:37.918039: 2DIAGNOSTIC, 729, -9.635665416718e-01, 4.365659123096e-08, 2.0630e+01, 1.1641e-02,
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stdout 2020-11-13T09:27:37.929753: 2DIAGNOSTIC, 730, -9.635665416718e-01, 4.359675642718e-08, 2.0641e+01, 1.1533e-02,
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stdout 2020-11-13T09:27:37.941484: 2DIAGNOSTIC, 731, -9.635665416718e-01, 4.353708860094e-08, 2.0653e+01, 1.1552e-02,
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stdout 2020-11-13T09:27:37.953443: 2DIAGNOSTIC, 732, -9.635665416718e-01, 4.347758064682e-08, 2.0665e+01, 1.1776e-02,
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stdout 2020-11-13T09:27:37.977051: 2DIAGNOSTIC, 734, -9.635665416718e-01, 4.335905501307e-08, 2.0688e+01, 1.1550e-02,
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stdout 2020-11-13T09:27:37.988764: 2DIAGNOSTIC, 735, -9.635665416718e-01, 4.330003378072e-08, 2.0699e+01, 1.1534e-02,
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stdout 2020-11-13T09:27:38.000481: 2DIAGNOSTIC, 736, -9.635665416718e-01, 4.324117597321e-08, 2.0711e+01, 1.1537e-02,
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stdout 2020-11-13T09:27:38.012306: 2DIAGNOSTIC, 737, -9.635665416718e-01, 4.318247448509e-08, 2.0723e+01, 1.1643e-02,
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stdout 2020-11-13T09:27:38.024109: 2DIAGNOSTIC, 738, -9.635665416718e-01, 4.312393286909e-08, 2.0734e+01, 1.1624e-02,
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stdout 2020-11-13T09:27:38.035820: 2DIAGNOSTIC, 739, -9.635665416718e-01, 4.306555112521e-08, 2.0746e+01, 1.1530e-02,
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stdout 2020-11-13T09:27:38.059292: 2DIAGNOSTIC, 741, -9.635665416718e-01, 4.294925659565e-08, 2.0769e+01, 1.1578e-02,
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stdout 2020-11-13T09:27:38.071165: 2DIAGNOSTIC, 742, -9.635665416718e-01, 4.289134736268e-08, 2.0781e+01, 1.1661e-02,
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stdout 2020-11-13T09:27:38.083140: 2DIAGNOSTIC, 743, -9.635665416718e-01, 4.283359089641e-08, 2.0792e+01, 1.1794e-02,
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stdout 2020-11-13T09:27:38.094858: 2DIAGNOSTIC, 744, -9.635665416718e-01, 4.277599074953e-08, 2.0804e+01, 1.1534e-02,
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stdout 2020-11-13T09:27:38.106573: 2DIAGNOSTIC, 745, -9.635665416718e-01, 4.271854692206e-08, 2.0815e+01, 1.1531e-02,
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stdout 2020-11-13T09:27:38.118396: 2DIAGNOSTIC, 746, -9.635665416718e-01, 4.266125586128e-08, 2.0827e+01, 1.1644e-02,
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stdout 2020-11-13T09:27:38.130122: 2DIAGNOSTIC, 747, -9.635665416718e-01, 4.260411756718e-08, 2.0839e+01, 1.1539e-02,
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stdout 2020-11-13T09:27:38.153550: 2DIAGNOSTIC, 749, -9.635665416718e-01, 4.249029927905e-08, 2.0862e+01, 1.1538e-02,
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stdout 2020-11-13T09:27:38.165426: 2DIAGNOSTIC, 750, -9.635665416718e-01, 4.243361928502e-08, 2.0873e+01, 1.1692e-02,
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stdout 2020-11-13T09:27:38.177153: 2DIAGNOSTIC, 751, -9.635665416718e-01, 4.237708850496e-08, 2.0885e+01, 1.1546e-02,
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stdout 2020-11-13T09:27:38.200844: 2DIAGNOSTIC, 753, -9.635665416718e-01, 4.226447813949e-08, 2.0908e+01, 1.1796e-02,
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stdout 2020-11-13T09:27:38.212668: 2DIAGNOSTIC, 754, -9.635665416718e-01, 4.220839855407e-08, 2.0920e+01, 1.1640e-02,
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stdout 2020-11-13T09:27:38.236896: 2DIAGNOSTIC, 756, -9.635665416718e-01, 4.209668347244e-08, 2.0944e+01, 1.2324e-02,
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stdout 2020-11-13T09:27:38.258858: 2DIAGNOSTIC, 757, -9.635665416718e-01, 4.204104797623e-08, 2.0955e+01, 1.1565e-02,
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stdout 2020-11-13T09:27:38.260427: 2DIAGNOSTIC, 758, -9.635665416718e-01, 4.198555814128e-08, 2.0967e+01, 1.1754e-02,
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stdout 2020-11-13T09:27:38.378466: 2DIAGNOSTIC, 768, -9.635665416718e-01, 4.143861431771e-08, 2.1083e+01, 1.1557e-02,
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stdout 2020-11-13T09:27:38.401899: 2DIAGNOSTIC, 770, -9.635665416718e-01, 4.133093156611e-08, 2.1106e+01, 1.1534e-02,
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stdout 2020-11-13T09:27:38.484394: 2DIAGNOSTIC, 777, -9.635665416718e-01, 4.095840822060e-08, 2.1187e+01, 1.1535e-02,
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stdout 2020-11-13T09:27:38.519668: 2DIAGNOSTIC, 780, -9.635665416718e-01, 4.080080273638e-08, 2.1222e+01, 1.1644e-02,
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stdout 2020-11-13T09:27:38.554813: 2DIAGNOSTIC, 783, -9.635665416718e-01, 4.064440517482e-08, 2.1257e+01, 1.1534e-02,
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stdout 2020-11-13T09:27:38.572234: 2DIAGNOSTIC, 784, -9.635665416718e-01, 4.059253910782e-08, 2.1274e+01, 1.7228e-02,
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stdout 2020-11-13T09:27:38.584229: 2DIAGNOSTIC, 785, -9.635665416718e-01, 4.054080449123e-08, 2.1286e+01, 1.1805e-02,
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stdout 2020-11-13T09:27:38.595963: 2DIAGNOSTIC, 786, -9.635665416718e-01, 4.048920132504e-08, 2.1297e+01, 1.1544e-02,
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stdout 2020-11-13T09:27:38.619540: 2DIAGNOSTIC, 788, -9.635665416718e-01, 4.038638934389e-08, 2.1320e+01, 1.1645e-02,
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stdout 2020-11-13T09:27:38.631260: 2DIAGNOSTIC, 789, -9.635665416718e-01, 4.033518052893e-08, 2.1332e+01, 1.1537e-02,
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stdout 2020-11-13T09:27:38.654696: 2DIAGNOSTIC, 791, -9.635665416718e-01, 4.023315014479e-08, 2.1355e+01, 1.1533e-02,
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stdout 2020-11-13T09:27:38.666520: 2DIAGNOSTIC, 792, -9.635665416718e-01, 4.018232502290e-08, 2.1367e+01, 1.1641e-02,
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stdout 2020-11-13T09:27:38.690037: 2DIAGNOSTIC, 794, -9.635665416718e-01, 4.008106557762e-08, 2.1390e+01, 1.1534e-02,
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stdout 2020-11-13T09:27:38.713818: 2DIAGNOSTIC, 796, -9.635665416718e-01, 3.998031417041e-08, 2.1413e+01, 1.1626e-02,
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stdout 2020-11-13T09:27:38.737259: 2DIAGNOSTIC, 798, -9.635665416718e-01, 3.988006724853e-08, 2.1436e+01, 1.1547e-02,
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stdout 2020-11-13T09:27:38.748971: 2DIAGNOSTIC, 799, -9.635665416718e-01, 3.983013385778e-08, 2.1448e+01, 1.1532e-02,
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stdout 2020-11-13T09:27:38.760802: 2DIAGNOSTIC, 800, -9.635665416718e-01, 3.978032125929e-08, 2.1459e+01, 1.1646e-02,
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stdout 2020-11-13T09:27:38.772518: 2DIAGNOSTIC, 801, -9.635665416718e-01, 3.973063655849e-08, 2.1471e+01, 1.1534e-02,
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stdout 2020-11-13T09:27:38.784279: 2DIAGNOSTIC, 802, -9.635665416718e-01, 3.968107620267e-08, 2.1483e+01, 1.1580e-02,
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stdout 2020-11-13T09:27:38.796624: 2DIAGNOSTIC, 803, -9.635665416718e-01, 3.963163663911e-08, 2.1495e+01, 1.2158e-02,
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stdout 2020-11-13T09:27:38.808358: 2DIAGNOSTIC, 804, -9.635665416718e-01, 3.958232142054e-08, 2.1506e+01, 1.1541e-02,
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stdout 2020-11-13T09:27:38.820220: 2DIAGNOSTIC, 805, -9.635665416718e-01, 3.953313054694e-08, 2.1518e+01, 1.1676e-02,
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stdout 2020-11-13T09:27:38.832205: 2DIAGNOSTIC, 806, -9.635665416718e-01, 3.948405691290e-08, 2.1530e+01, 1.1802e-02,
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stdout 2020-11-13T09:27:38.843924: 2DIAGNOSTIC, 807, -9.635665416718e-01, 3.943511117654e-08, 2.1541e+01, 1.1534e-02,
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stdout 2020-11-13T09:27:38.855643: 2DIAGNOSTIC, 808, -9.635665416718e-01, 3.938628267974e-08, 2.1553e+01, 1.1531e-02,
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stdout 2020-11-13T09:27:38.867653: 2DIAGNOSTIC, 809, -9.635665416718e-01, 3.933757497521e-08, 2.1565e+01, 1.1826e-02,
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stdout 2020-11-13T09:27:38.879420: 2DIAGNOSTIC, 810, -9.635665416718e-01, 3.928898806294e-08, 2.1576e+01, 1.1581e-02,
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stdout 2020-11-13T09:27:38.891137: 2DIAGNOSTIC, 811, -9.635665416718e-01, 3.924052194293e-08, 2.1588e+01, 1.1537e-02,
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stdout 2020-11-13T09:27:38.902857: 2DIAGNOSTIC, 812, -9.635665416718e-01, 3.919217306247e-08, 2.1599e+01, 1.1530e-02,
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stdout 2020-11-13T09:27:38.914686: 2DIAGNOSTIC, 813, -9.635665416718e-01, 3.914394497428e-08, 2.1611e+01, 1.1647e-02,
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stdout 2020-11-13T09:27:38.926409: 2DIAGNOSTIC, 814, -9.635665416718e-01, 3.909583767836e-08, 2.1622e+01, 1.1544e-02,
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stdout 2020-11-13T09:27:38.938120: 2DIAGNOSTIC, 815, -9.635665416718e-01, 3.904784406927e-08, 2.1634e+01, 1.1531e-02,
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stdout 2020-11-13T09:27:38.950103: 2DIAGNOSTIC, 816, -9.635665416718e-01, 3.899997125245e-08, 2.1646e+01, 1.1802e-02,
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stdout 2020-11-13T09:27:38.961942: 2DIAGNOSTIC, 817, -9.635665416718e-01, 3.895221567518e-08, 2.1657e+01, 1.1654e-02,
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stdout 2020-11-13T09:27:38.973665: 2DIAGNOSTIC, 818, -9.635665416718e-01, 3.890457378475e-08, 2.1669e+01, 1.1534e-02,
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stdout 2020-11-13T09:27:38.985435: 2DIAGNOSTIC, 819, -9.635665416718e-01, 3.885705268658e-08, 2.1681e+01, 1.1586e-02,
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stdout 2020-11-13T09:27:38.997152: 2DIAGNOSTIC, 820, -9.635665416718e-01, 3.880964527525e-08, 2.1692e+01, 1.1535e-02,
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stdout 2020-11-13T09:27:39.008864: 2DIAGNOSTIC, 821, -9.635665416718e-01, 3.876235155076e-08, 2.1704e+01, 1.1531e-02,
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stdout 2020-11-13T09:27:39.020762: 2DIAGNOSTIC, 822, -9.635665416718e-01, 3.871517506582e-08, 2.1715e+01, 1.1712e-02,
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stdout 2020-11-13T09:27:39.032479: 2DIAGNOSTIC, 823, -9.635665416718e-01, 3.866811226771e-08, 2.1727e+01, 1.1537e-02,
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stdout 2020-11-13T09:27:39.044206: 2DIAGNOSTIC, 824, -9.635665416718e-01, 3.862116670916e-08, 2.1738e+01, 1.1545e-02,
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stdout 2020-11-13T09:27:39.055944: 2DIAGNOSTIC, 825, -9.635665416718e-01, 3.857433128474e-08, 2.1750e+01, 1.1555e-02,
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stdout 2020-11-13T09:27:39.067779: 2DIAGNOSTIC, 826, -9.635665416718e-01, 3.852760954715e-08, 2.1762e+01, 1.1645e-02,
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stdout 2020-11-13T09:27:39.079766: 2DIAGNOSTIC, 827, -9.635665416718e-01, 3.848100149639e-08, 2.1773e+01, 1.1803e-02,
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stdout 2020-11-13T09:27:39.091565: 2DIAGNOSTIC, 828, -9.635665416718e-01, 3.843450713248e-08, 2.1785e+01, 1.1612e-02,
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stdout 2020-11-13T09:27:39.103280: 2DIAGNOSTIC, 829, -9.635665416718e-01, 3.838812645540e-08, 2.1797e+01, 1.1534e-02,
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stdout 2020-11-13T09:27:39.115115: 2DIAGNOSTIC, 830, -9.635665416718e-01, 3.834185591245e-08, 2.1808e+01, 1.1655e-02,
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stdout 2020-11-13T09:27:39.126842: 2DIAGNOSTIC, 831, -9.635665416718e-01, 3.829569550362e-08, 2.1820e+01, 1.1544e-02,
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stdout 2020-11-13T09:27:39.138555: 2DIAGNOSTIC, 832, -9.635665416718e-01, 3.824964522892e-08, 2.1831e+01, 1.1532e-02,
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stdout 2020-11-13T09:27:39.150271: 2DIAGNOSTIC, 833, -9.635665416718e-01, 3.820370864105e-08, 2.1843e+01, 1.1538e-02,
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stdout 2020-11-13T09:27:39.162119: 2DIAGNOSTIC, 834, -9.635665416718e-01, 3.815788218731e-08, 2.1855e+01, 1.1669e-02,
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stdout 2020-11-13T09:27:39.185628: 2DIAGNOSTIC, 836, -9.635665416718e-01, 3.806655612948e-08, 2.1878e+01, 1.1611e-02,
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stdout 2020-11-13T09:27:39.197347: 2DIAGNOSTIC, 837, -9.635665416718e-01, 3.802105652539e-08, 2.1889e+01, 1.1539e-02,
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stdout 2020-11-13T09:27:39.209326: 2DIAGNOSTIC, 838, -9.635665416718e-01, 3.797566350272e-08, 2.1901e+01, 1.1794e-02,
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stdout 2020-11-13T09:27:39.221162: 2DIAGNOSTIC, 839, -9.635665416718e-01, 3.793038416688e-08, 2.1913e+01, 1.1652e-02,
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stdout 2020-11-13T09:27:39.232882: 2DIAGNOSTIC, 840, -9.635665416718e-01, 3.788520785974e-08, 2.1924e+01, 1.1536e-02,
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stdout 2020-11-13T09:27:39.244594: 2DIAGNOSTIC, 841, -9.635665416718e-01, 3.784014168673e-08, 2.1936e+01, 1.1533e-02,
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stdout 2020-11-13T09:27:39.256361: 2DIAGNOSTIC, 842, -9.635665416718e-01, 3.779518209512e-08, 2.1947e+01, 1.1584e-02,
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stdout 2020-11-13T09:27:39.268651: 2DIAGNOSTIC, 843, -9.635665416718e-01, 3.775032908493e-08, 2.1959e+01, 1.2107e-02,
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stdout 2020-11-13T09:27:39.294581: 2DIAGNOSTIC, 845, -9.635665416718e-01, 3.766093925606e-08, 2.1985e+01, 1.2626e-02,
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stdout 2020-11-13T09:27:39.306348: 2DIAGNOSTIC, 846, -9.635665416718e-01, 3.761640599009e-08, 2.1997e+01, 1.1582e-02,
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stdout 2020-11-13T09:27:39.318401: 2DIAGNOSTIC, 847, -9.635665416718e-01, 3.757197575283e-08, 2.2008e+01, 1.1867e-02,
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stdout 2020-11-13T09:27:39.330399: 2DIAGNOSTIC, 848, -9.635665416718e-01, 3.752764854426e-08, 2.2020e+01, 1.1813e-02,
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stdout 2020-11-13T09:27:39.342116: 2DIAGNOSTIC, 849, -9.635665416718e-01, 3.748342791710e-08, 2.2032e+01, 1.1532e-02,
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stdout 2020-11-13T09:27:39.377374: 2DIAGNOSTIC, 852, -9.635665416718e-01, 3.735138776051e-08, 2.2066e+01, 1.1535e-02,
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stdout 2020-11-13T09:27:39.401825: 2DIAGNOSTIC, 854, -9.635665416718e-01, 3.726387731717e-08, 2.2091e+01, 1.1787e-02,
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stdout 2020-11-13T09:27:39.485701: 2DIAGNOSTIC, 861, -9.635665416718e-01, 3.696079176052e-08, 2.2173e+01, 1.1781e-02,
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stdout 2020-11-13T09:27:39.703982: 2DIAGNOSTIC, 879, -9.635665416718e-01, 3.620360544687e-08, 2.2388e+01, 1.1836e-02,
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stdout 2020-11-13T09:27:39.739226: 2DIAGNOSTIC, 882, -9.635665416718e-01, 3.608041154735e-08, 2.2423e+01, 1.1536e-02,
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stdout 2020-11-13T09:27:39.927904: 2DIAGNOSTIC, 898, -9.635665416718e-01, 3.543729576450e-08, 2.2608e+01, 1.1544e-02,
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stdout 2020-11-13T09:27:39.939622: 2DIAGNOSTIC, 899, -9.635665416718e-01, 3.539786419537e-08, 2.2620e+01, 1.1534e-02,
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stdout 2020-11-13T09:27:39.951597: 2DIAGNOSTIC, 900, -9.635665416718e-01, 3.535851433867e-08, 2.2632e+01, 1.1794e-02,
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stdout 2020-11-13T09:27:39.963441: 2DIAGNOSTIC, 901, -9.635665416718e-01, 3.531925685252e-08, 2.2643e+01, 1.1658e-02,
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stdout 2020-11-13T09:27:39.986888: 2DIAGNOSTIC, 903, -9.635665416718e-01, 3.524099767560e-08, 2.2666e+01, 1.1549e-02,
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stdout 2020-11-13T09:27:39.998604: 2DIAGNOSTIC, 904, -9.635665416718e-01, 3.520199953755e-08, 2.2678e+01, 1.1530e-02,
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stdout 2020-11-13T09:27:40.010486: 2DIAGNOSTIC, 905, -9.635665416718e-01, 3.516308666462e-08, 2.2690e+01, 1.1701e-02,
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stdout 2020-11-13T09:27:40.081293: 2DIAGNOSTIC, 911, -9.635665416718e-01, 3.493140710020e-08, 2.2759e+01, 1.1804e-02,
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stdout 2020-11-13T09:27:40.093006: 2DIAGNOSTIC, 912, -9.635665416718e-01, 3.489308753046e-08, 2.2771e+01, 1.1527e-02,
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stdout 2020-11-13T09:27:40.140037: 2DIAGNOSTIC, 916, -9.635665416718e-01, 3.474065835007e-08, 2.2817e+01, 1.1539e-02,
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stdout 2020-11-13T09:27:46.406207:DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
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stdout 2020-11-13T09:27:46.406566: 2DIAGNOSTIC, 1, -6.843001246452e-01, inf, 2.9068e+01, 5.2705e+00,
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stdout 2020-11-13T09:28:36.002859:DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201113-09:28:36,3 nipype.interface INFO:
stdout 2020-11-13T09:28:36.003235: 2DIAGNOSTIC, 1, -5.980337262154e-01, inf, 7.8567e+01, 3.9933e+00,
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stdout 2020-11-13T09:28:37.405304: 2DIAGNOSTIC, 3, -5.996896624565e-01, inf, 7.9969e+01, 6.9509e-01,
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stdout 2020-11-13T09:29:27.057188: 2DIAGNOSTIC, 62, -6.008608937263e-01, 5.174630928195e-07, 1.2960e+02, 8.3628e-01,
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stdout 2020-11-13T09:29:27.892857: 2DIAGNOSTIC, 63, -6.008608341217e-01, 5.134709226695e-07, 1.3043e+02, 8.3528e-01,
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stdout 2020-11-13T09:29:31.483263: 2DIAGNOSTIC, 67, -6.008610129356e-01, 4.806451556760e-07, 1.3402e+02, 1.0924e+00,
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stdout 2020-11-13T09:29:32.318067: 2DIAGNOSTIC, 68, -6.008611917496e-01, 4.716197850030e-07, 1.3485e+02, 8.3441e-01,
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stdout 2020-11-13T09:29:33.152839: 2DIAGNOSTIC, 69, -6.008610129356e-01, 4.640625661523e-07, 1.3569e+02, 8.3437e-01,
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stdout 2020-11-13T09:29:33.989723: 2DIAGNOSTIC, 70, -6.008608937263e-01, 4.573164744670e-07, 1.3652e+02, 8.3648e-01,
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stdout 2020-11-13T09:29:35.660938: 2DIAGNOSTIC, 72, -6.008610725403e-01, 4.440504142167e-07, 1.3820e+02, 8.3452e-01,
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stdout 2020-11-13T09:31:29.286465: 2DIAGNOSTIC, 208, -6.008610129356e-01, 1.531081466055e-07, 2.5177e+02, 8.3199e-01,
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stdout 2020-11-13T09:31:30.953665: 2DIAGNOSTIC, 210, -6.008610129356e-01, 1.522383143993e-07, 2.5343e+02, 8.3313e-01,
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stdout 2020-11-13T09:31:31.787437: 2DIAGNOSTIC, 211, -6.008610725403e-01, 1.515724790124e-07, 2.5427e+02, 8.3338e-01,
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stdout 2020-11-13T09:31:32.618246: 2DIAGNOSTIC, 212, -6.008610725403e-01, 1.506982698629e-07, 2.5510e+02, 8.3043e-01,
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stdout 2020-11-13T09:31:33.443664: 2DIAGNOSTIC, 213, -6.008611321449e-01, 1.499009556483e-07, 2.5592e+02, 8.2505e-01,
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stdout 2020-11-13T09:31:34.276048: 2DIAGNOSTIC, 214, -6.008611321449e-01, 1.490524823566e-07, 2.5675e+02, 8.3197e-01,
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stdout 2020-11-13T09:31:35.943786: 2DIAGNOSTIC, 216, -6.008611321449e-01, 1.474228383813e-07, 2.5842e+02, 8.3303e-01,
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stdout 2020-11-13T09:31:36.777301: 2DIAGNOSTIC, 217, -6.008610725403e-01, 1.467897163820e-07, 2.5925e+02, 8.3311e-01,
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stdout 2020-11-13T09:31:37.608131: 2DIAGNOSTIC, 218, -6.008610725403e-01, 1.458725193970e-07, 2.6008e+02, 8.3045e-01,
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stdout 2020-11-13T09:31:38.433963: 2DIAGNOSTIC, 219, -6.008610129356e-01, 1.452397242474e-07, 2.6091e+02, 8.2548e-01,
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stdout 2020-11-13T09:31:39.268704: 2DIAGNOSTIC, 220, -6.008609533310e-01, 1.441037795757e-07, 2.6174e+02, 8.3435e-01,
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stdout 2020-11-13T09:31:40.110759: 2DIAGNOSTIC, 221, -6.008609533310e-01, 1.431565408438e-07, 2.6258e+02, 8.4166e-01,
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stdout 2020-11-13T09:31:40.945178: 2DIAGNOSTIC, 222, -6.008610129356e-01, 1.424140947393e-07, 2.6342e+02, 8.3404e-01,
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stdout 2020-11-13T09:31:41.779179: 2DIAGNOSTIC, 223, -6.008610725403e-01, 1.420130359975e-07, 2.6425e+02, 8.3362e-01,
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stdout 2020-11-13T09:31:42.610851: 2DIAGNOSTIC, 224, -6.008609533310e-01, 1.414299504177e-07, 2.6508e+02, 8.3129e-01,
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stdout 2020-11-13T09:31:43.437798: 2DIAGNOSTIC, 225, -6.008609533310e-01, 1.407922383123e-07, 2.6591e+02, 8.2657e-01,
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stdout 2020-11-13T09:31:44.271591: 2DIAGNOSTIC, 226, -6.008610725403e-01, 1.405929168641e-07, 2.6674e+02, 8.3339e-01,
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stdout 2020-11-13T09:31:45.105198: 2DIAGNOSTIC, 227, -6.008610725403e-01, 1.402703304620e-07, 2.6758e+02, 8.3322e-01,
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stdout 2020-11-13T09:31:45.939022: 2DIAGNOSTIC, 228, -6.008610725403e-01, 1.399414202297e-07, 2.6841e+02, 8.3343e-01,
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stdout 2020-11-13T09:31:46.773502: 2DIAGNOSTIC, 229, -6.008610129356e-01, 1.393419921669e-07, 2.6924e+02, 8.3408e-01,
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stdout 2020-11-13T09:31:47.605478: 2DIAGNOSTIC, 230, -6.008610129356e-01, 1.385907921758e-07, 2.7008e+02, 8.3160e-01,
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stdout 2020-11-13T09:31:48.431619: 2DIAGNOSTIC, 231, -6.008610129356e-01, 1.378074898639e-07, 2.7090e+02, 8.2578e-01,
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stdout 2020-11-13T09:31:51.765077: 2DIAGNOSTIC, 235, -6.008610725403e-01, 1.353702288043e-07, 2.7423e+02, 8.3402e-01,
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stdout 2020-11-13T09:31:52.596727: 2DIAGNOSTIC, 236, -6.008610725403e-01, 1.349362577230e-07, 2.7506e+02, 8.3126e-01,
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stdout 2020-11-13T09:31:53.426774: 2DIAGNOSTIC, 237, -6.008610129356e-01, 1.343714899349e-07, 2.7589e+02, 8.2970e-01,
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stdout 2020-11-13T09:31:54.260156: 2DIAGNOSTIC, 238, -6.008610129356e-01, 1.338022599384e-07, 2.7673e+02, 8.3293e-01,
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stdout 2020-11-13T09:31:55.097125: 2DIAGNOSTIC, 239, -6.008610129356e-01, 1.331044785502e-07, 2.7756e+02, 8.3659e-01,
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stdout 2020-11-13T09:31:55.930581: 2DIAGNOSTIC, 240, -6.008610129356e-01, 1.324125094015e-07, 2.7840e+02, 8.3306e-01,
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stdout 2020-11-13T09:31:56.764169: 2DIAGNOSTIC, 241, -6.008610129356e-01, 1.317415012636e-07, 2.7923e+02, 8.3319e-01,
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stdout 2020-11-13T09:31:58.422115: 2DIAGNOSTIC, 243, -6.008610725403e-01, 1.308318218207e-07, 2.8089e+02, 8.2606e-01,
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stdout 2020-11-13T09:31:59.255223: 2DIAGNOSTIC, 244, -6.008611321449e-01, 1.305734542711e-07, 2.8172e+02, 8.3272e-01,
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stdout 2020-11-13T09:32:00.089398: 2DIAGNOSTIC, 245, -6.008610725403e-01, 1.301801546560e-07, 2.8255e+02, 8.3378e-01,
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stdout 2020-11-13T09:32:00.937717: 2DIAGNOSTIC, 246, -6.008611321449e-01, 1.298794813920e-07, 2.8340e+02, 8.4792e-01,
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stdout 2020-11-13T09:32:02.605158: 2DIAGNOSTIC, 248, -6.008610725403e-01, 1.287645829962e-07, 2.8507e+02, 8.3123e-01,
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stdout 2020-11-13T09:32:03.430858: 2DIAGNOSTIC, 249, -6.008609533310e-01, 1.278579304653e-07, 2.8589e+02, 8.2534e-01,
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stdout 2020-11-13T09:32:04.263912: 2DIAGNOSTIC, 250, -6.008610129356e-01, 1.270691427635e-07, 2.8673e+02, 8.3265e-01,
201113-09:32:12,245 nipype.interface INFO:
stdout 2020-11-13T09:32:12.245890:DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201113-09:32:12,246 nipype.interface INFO:
stdout 2020-11-13T09:32:12.246265: 2DIAGNOSTIC, 1, -5.050776004791e-01, inf, 2.9471e+02, 7.9820e+00,
201113-09:32:16,913 nipype.interface INFO:
stdout 2020-11-13T09:32:16.913072: 2DIAGNOSTIC, 2, -5.054765939713e-01, inf, 2.9938e+02, 4.6666e+00,
201113-09:32:21,578 nipype.interface INFO:
stdout 2020-11-13T09:32:21.578539: 2DIAGNOSTIC, 3, -5.056139230728e-01, inf, 3.0404e+02, 4.6651e+00,
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stdout 2020-11-13T09:32:26.240975: 2DIAGNOSTIC, 4, -5.056945681572e-01, inf, 3.0870e+02, 4.6620e+00,
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stdout 2020-11-13T09:32:31.696997: 2DIAGNOSTIC, 5, -5.057628154755e-01, inf, 3.1416e+02, 5.4554e+00,
201113-09:32:37,929 nipype.interface INFO:
stdout 2020-11-13T09:32:37.929469: 2DIAGNOSTIC, 6, -5.058349967003e-01, inf, 3.2039e+02, 6.2321e+00,
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stdout 2020-11-13T09:32:42.605171: 2DIAGNOSTIC, 7, -5.058600306511e-01, inf, 3.2506e+02, 4.6753e+00,
201113-09:32:48,52 nipype.interface INFO:
stdout 2020-11-13T09:32:48.052227: 2DIAGNOSTIC, 8, -5.058977007866e-01, inf, 3.3051e+02, 5.4467e+00,
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stdout 2020-11-13T09:32:52.722686: 2DIAGNOSTIC, 9, -5.058993101120e-01, inf, 3.3518e+02, 4.6701e+00,
201113-09:33:00,530 nipype.interface INFO:
stdout 2020-11-13T09:33:00.530562: 2DIAGNOSTIC, 10, -5.059148669243e-01, 8.720011101104e-05, 3.4299e+02, 7.8075e+00,
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stdout 2020-11-13T09:33:05.197494: 2DIAGNOSTIC, 11, -5.059145689011e-01, 4.947278284817e-05, 3.4766e+02, 4.6665e+00,
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stdout 2020-11-13T09:33:09.873822: 2DIAGNOSTIC, 12, -5.059142112732e-01, 3.241211379645e-05, 3.5233e+02, 4.6759e+00,
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stdout 2020-11-13T09:33:14.540585: 2DIAGNOSTIC, 13, -5.059167742729e-01, 2.130308166670e-05, 3.5700e+02, 4.6664e+00,
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stdout 2020-11-13T09:33:19.208469: 2DIAGNOSTIC, 14, -5.059195160866e-01, 1.337632966170e-05, 3.6167e+02, 4.6675e+00,
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stdout 2020-11-13T09:33:23.881869: 2DIAGNOSTIC, 15, -5.059259533882e-01, 8.235701898229e-06, 3.6634e+02, 4.6730e+00,
201113-09:33:28,546 nipype.interface INFO:
stdout 2020-11-13T09:33:28.546105: 2DIAGNOSTIC, 16, -5.059366822243e-01, 6.074907560105e-06, 3.7100e+02, 4.6638e+00,
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stdout 2020-11-13T09:33:33.212639: 2DIAGNOSTIC, 17, -5.059478878975e-01, 4.957177225151e-06, 3.7567e+02, 4.6661e+00,
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stdout 2020-11-13T09:33:44.190926: 2DIAGNOSTIC, 18, -5.060026049614e-01, 6.562483577000e-06, 3.8665e+02, 1.0978e+01,
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stdout 2020-11-13T09:33:52.002204: 2DIAGNOSTIC, 19, -5.060052871704e-01, 7.628399089299e-06, 3.9446e+02, 7.8109e+00,
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stdout 2020-11-13T09:33:59.021664: 2DIAGNOSTIC, 20, -5.060049295425e-01, 8.479766620439e-06, 4.0148e+02, 7.0191e+00,
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stdout 2020-11-13T09:34:05.269359: 2DIAGNOSTIC, 21, -5.060050487518e-01, 8.624192560092e-06, 4.0772e+02, 6.2473e+00,
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stdout 2020-11-13T09:34:10.747152: 2DIAGNOSTIC, 22, -5.060052871704e-01, 8.080141014943e-06, 4.1320e+02, 5.4774e+00,
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stdout 2020-11-13T09:34:16.197499: 2DIAGNOSTIC, 23, -5.060050487518e-01, 6.999694960541e-06, 4.1865e+02, 5.4500e+00,
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stdout 2020-11-13T09:34:22.429397: 2DIAGNOSTIC, 24, -5.060049891472e-01, 5.543060069613e-06, 4.2488e+02, 6.2315e+00,
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stdout 2020-11-13T09:34:27.096586: 2DIAGNOSTIC, 25, -5.060045123100e-01, 3.957073204219e-06, 4.2955e+02, 4.6668e+00,
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stdout 2020-11-13T09:34:32.544387: 2DIAGNOSTIC, 26, -5.060047507286e-01, 2.486060566298e-06, 4.3500e+02, 5.4474e+00,
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stdout 2020-11-13T09:34:39.578272: 2DIAGNOSTIC, 27, -5.060046911240e-01, 1.204616523864e-06, 4.4203e+02, 7.0335e+00,
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stdout 2020-11-13T09:34:45.029419: 2DIAGNOSTIC, 28, -5.060053467751e-01, 1.121719037656e-06, 4.4748e+02, 5.4508e+00,
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stdout 2020-11-13T09:34:51.267209: 2DIAGNOSTIC, 29, -5.060048103333e-01, 1.087564214686e-06, 4.5372e+02, 6.2372e+00,
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stdout 2020-11-13T09:34:57.507307: 2DIAGNOSTIC, 30, -5.060048103333e-01, 1.050368950928e-06, 4.5996e+02, 6.2397e+00,
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stdout 2020-11-13T09:35:02.182220: 2DIAGNOSTIC, 31, -5.060047507286e-01, 1.017467525344e-06, 4.6463e+02, 4.6745e+00,
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stdout 2020-11-13T09:35:07.642269: 2DIAGNOSTIC, 32, -5.060045719147e-01, 9.883178790915e-07, 4.7009e+02, 5.4597e+00,
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stdout 2020-11-13T09:35:12.320945: 2DIAGNOSTIC, 33, -5.060042142868e-01, 9.512761494079e-07, 4.7477e+02, 4.6783e+00,
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stdout 2020-11-13T09:35:17.776573: 2DIAGNOSTIC, 34, -5.060043334961e-01, 9.191035701406e-07, 4.8023e+02, 5.4552e+00,
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stdout 2020-11-13T09:35:23.229496: 2DIAGNOSTIC, 35, -5.060044527054e-01, 8.845296974869e-07, 4.8568e+02, 5.4525e+00,
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stdout 2020-11-13T09:35:28.685618: 2DIAGNOSTIC, 36, -5.060041546822e-01, 8.531956154911e-07, 4.9113e+02, 5.4558e+00,
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stdout 2020-11-13T09:35:34.136718: 2DIAGNOSTIC, 37, -5.060044527054e-01, 8.299529099531e-07, 4.9658e+02, 5.4508e+00,
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stdout 2020-11-13T09:35:39.598476: 2DIAGNOSTIC, 38, -5.060045719147e-01, 8.223954637288e-07, 5.0205e+02, 5.4614e+00,
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stdout 2020-11-13T09:35:45.052226: 2DIAGNOSTIC, 39, -5.060048103333e-01, 8.122133863253e-07, 5.0750e+02, 5.4534e+00,
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stdout 2020-11-13T09:35:50.501584: 2DIAGNOSTIC, 40, -5.060046911240e-01, 8.010927672331e-07, 5.1295e+02, 5.4488e+00,
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stdout 2020-11-13T09:35:55.956285: 2DIAGNOSTIC, 41, -5.060048699379e-01, 7.918014830466e-07, 5.1840e+02, 5.4543e+00,
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stdout 2020-11-13T09:36:13.130458: 2DIAGNOSTIC, 44, -5.060047507286e-01, 7.409111049128e-07, 5.3558e+02, 6.2505e+00,
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stdout 2020-11-13T09:36:18.586873: 2DIAGNOSTIC, 45, -5.060047507286e-01, 7.217159918582e-07, 5.4103e+02, 5.4560e+00,
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stdout 2020-11-13T09:36:30.277072: 2DIAGNOSTIC, 47, -5.060046911240e-01, 6.772776259822e-07, 5.5272e+02, 6.2377e+00,
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stdout 2020-11-13T09:36:35.731788: 2DIAGNOSTIC, 48, -5.060047507286e-01, 6.598501727240e-07, 5.5818e+02, 5.4543e+00,
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stdout 2020-11-13T09:36:41.188519: 2DIAGNOSTIC, 49, -5.060046911240e-01, 6.455276775341e-07, 5.6363e+02, 5.4564e+00,
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201113-09:36:52,91 nipype.interface INFO:
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201113-09:36:57,542 nipype.interface INFO:
stdout 2020-11-13T09:36:57.542794: 2DIAGNOSTIC, 52, -5.060045123100e-01, 6.030508075128e-07, 5.7998e+02, 5.4508e+00,
201113-09:37:02,996 nipype.interface INFO:
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201113-09:37:08,442 nipype.interface INFO:
stdout 2020-11-13T09:37:08.441985: 2DIAGNOSTIC, 54, -5.060045719147e-01, 5.828087523696e-07, 5.9088e+02, 5.4454e+00,
201113-09:37:13,914 nipype.interface INFO:
stdout 2020-11-13T09:37:13.914198: 2DIAGNOSTIC, 55, -5.060043334961e-01, 5.708558319384e-07, 5.9635e+02, 5.4718e+00,
201113-09:37:19,365 nipype.interface INFO:
stdout 2020-11-13T09:37:19.365040: 2DIAGNOSTIC, 56, -5.060043334961e-01, 5.595634320343e-07, 6.0180e+02, 5.4504e+00,
201113-09:37:24,820 nipype.interface INFO:
stdout 2020-11-13T09:37:24.819972: 2DIAGNOSTIC, 57, -5.060042738914e-01, 5.488453211910e-07, 6.0726e+02, 5.4545e+00,
201113-09:37:30,272 nipype.interface INFO:
stdout 2020-11-13T09:37:30.272524: 2DIAGNOSTIC, 58, -5.060046315193e-01, 5.433867613647e-07, 6.1271e+02, 5.4521e+00,
201113-09:37:35,731 nipype.interface INFO:
stdout 2020-11-13T09:37:35.731103: 2DIAGNOSTIC, 59, -5.060045719147e-01, 5.373710791901e-07, 6.1817e+02, 5.4582e+00,
201113-09:37:41,185 nipype.interface INFO:
stdout 2020-11-13T09:37:41.185214: 2DIAGNOSTIC, 60, -5.060043931007e-01, 5.296387826093e-07, 6.2362e+02, 5.4537e+00,
201113-09:37:46,641 nipype.interface INFO:
stdout 2020-11-13T09:37:46.641759: 2DIAGNOSTIC, 61, -5.060043334961e-01, 5.201187605053e-07, 6.2908e+02, 5.4562e+00,
201113-09:37:52,89 nipype.interface INFO:
stdout 2020-11-13T09:37:52.089701: 2DIAGNOSTIC, 62, -5.060043334961e-01, 5.115375074638e-07, 6.3453e+02, 5.4476e+00,
201113-09:37:57,538 nipype.interface INFO:
stdout 2020-11-13T09:37:57.538057: 2DIAGNOSTIC, 63, -5.060043931007e-01, 5.037895220994e-07, 6.3998e+02, 5.4477e+00,
201113-09:38:03,1 nipype.interface INFO:
stdout 2020-11-13T09:38:03.001594: 2DIAGNOSTIC, 64, -5.060043334961e-01, 4.964288677911e-07, 6.4544e+02, 5.4631e+00,
201113-09:38:09,248 nipype.interface INFO:
stdout 2020-11-13T09:38:09.248783: 2DIAGNOSTIC, 65, -5.060045123100e-01, 4.889378146800e-07, 6.5169e+02, 6.2468e+00,
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stdout 2020-11-13T09:38:14.711410: 2DIAGNOSTIC, 66, -5.060044527054e-01, 4.812303586732e-07, 6.5715e+02, 5.4622e+00,
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stdout 2020-11-13T09:38:20.162559: 2DIAGNOSTIC, 67, -5.060045719147e-01, 4.742365149468e-07, 6.6260e+02, 5.4508e+00,
201113-09:38:25,619 nipype.interface INFO:
stdout 2020-11-13T09:38:25.619888: 2DIAGNOSTIC, 68, -5.060046315193e-01, 4.709235668088e-07, 6.6805e+02, 5.4570e+00,
201113-09:38:31,67 nipype.interface INFO:
stdout 2020-11-13T09:38:31.067159: 2DIAGNOSTIC, 69, -5.060045123100e-01, 4.659805483698e-07, 6.7350e+02, 5.4469e+00,
201113-09:38:36,516 nipype.interface INFO:
stdout 2020-11-13T09:38:36.516782: 2DIAGNOSTIC, 70, -5.060044527054e-01, 4.588407591655e-07, 6.7895e+02, 5.4492e+00,
201113-09:38:41,982 nipype.interface INFO:
stdout 2020-11-13T09:38:41.982531: 2DIAGNOSTIC, 71, -5.060044527054e-01, 4.510162625593e-07, 6.8442e+02, 5.4654e+00,
201113-09:38:47,428 nipype.interface INFO:
stdout 2020-11-13T09:38:47.428060: 2DIAGNOSTIC, 72, -5.060045719147e-01, 4.440224472546e-07, 6.8986e+02, 5.4451e+00,
201113-09:38:52,884 nipype.interface INFO:
stdout 2020-11-13T09:38:52.883925: 2DIAGNOSTIC, 73, -5.060045719147e-01, 4.374499269488e-07, 6.9532e+02, 5.4554e+00,
201113-09:38:58,331 nipype.interface INFO:
stdout 2020-11-13T09:38:58.331648: 2DIAGNOSTIC, 74, -5.060045719147e-01, 4.304393996790e-07, 7.0076e+02, 5.4471e+00,
201113-09:39:03,791 nipype.interface INFO:
stdout 2020-11-13T09:39:03.791229: 2DIAGNOSTIC, 75, -5.060045719147e-01, 4.249598077877e-07, 7.0622e+02, 5.4592e+00,
201113-09:39:09,252 nipype.interface INFO:
stdout 2020-11-13T09:39:09.252837: 2DIAGNOSTIC, 76, -5.060045123100e-01, 4.186313162791e-07, 7.1168e+02, 5.4612e+00,
201113-09:39:14,725 nipype.interface INFO:
stdout 2020-11-13T09:39:14.725139: 2DIAGNOSTIC, 77, -5.060044527054e-01, 4.128658588343e-07, 7.1716e+02, 5.4719e+00,
201113-09:39:20,173 nipype.interface INFO:
stdout 2020-11-13T09:39:20.173517: 2DIAGNOSTIC, 78, -5.060045123100e-01, 4.081578310888e-07, 7.2260e+02, 5.4480e+00,
201113-09:39:25,629 nipype.interface INFO:
stdout 2020-11-13T09:39:25.629738: 2DIAGNOSTIC, 79, -5.060045123100e-01, 4.026940985113e-07, 7.2806e+02, 5.4558e+00,
201113-09:39:31,79 nipype.interface INFO:
stdout 2020-11-13T09:39:31.079204: 2DIAGNOSTIC, 80, -5.060045123100e-01, 3.969582564878e-07, 7.3351e+02, 5.4491e+00,
201113-09:39:36,525 nipype.interface INFO:
stdout 2020-11-13T09:39:36.525916: 2DIAGNOSTIC, 81, -5.060045719147e-01, 3.918366360267e-07, 7.3896e+02, 5.4463e+00,
201113-09:39:41,989 nipype.interface INFO:
stdout 2020-11-13T09:39:41.989174: 2DIAGNOSTIC, 82, -5.060045123100e-01, 3.873316529734e-07, 7.4442e+02, 5.4629e+00,
201113-09:39:47,441 nipype.interface INFO:
stdout 2020-11-13T09:39:47.440979: 2DIAGNOSTIC, 83, -5.060045123100e-01, 3.830004118299e-07, 7.4987e+02, 5.4514e+00,
201113-09:39:52,898 nipype.interface INFO:
stdout 2020-11-13T09:39:52.898342: 2DIAGNOSTIC, 84, -5.060045123100e-01, 3.787886839746e-07, 7.5533e+02, 5.4569e+00,
201113-09:39:58,349 nipype.interface INFO:
stdout 2020-11-13T09:39:58.349224: 2DIAGNOSTIC, 85, -5.060045719147e-01, 3.750684811621e-07, 7.6078e+02, 5.4503e+00,
201113-09:40:03,830 nipype.interface INFO:
stdout 2020-11-13T09:40:03.830286: 2DIAGNOSTIC, 86, -5.060045719147e-01, 3.709674558650e-07, 7.6626e+02, 5.4807e+00,
201113-09:40:09,300 nipype.interface INFO:
stdout 2020-11-13T09:40:09.300439: 2DIAGNOSTIC, 87, -5.060045719147e-01, 3.664725909402e-07, 7.7173e+02, 5.4698e+00,
201113-09:40:14,763 nipype.interface INFO:
stdout 2020-11-13T09:40:14.763597: 2DIAGNOSTIC, 88, -5.060045123100e-01, 3.620152710937e-07, 7.7719e+02, 5.4628e+00,
201113-09:40:20,209 nipype.interface INFO:
stdout 2020-11-13T09:40:20.209450: 2DIAGNOSTIC, 89, -5.060045123100e-01, 3.576165283903e-07, 7.8264e+02, 5.4455e+00,
201113-09:40:25,669 nipype.interface INFO:
stdout 2020-11-13T09:40:25.669592: 2DIAGNOSTIC, 90, -5.060045719147e-01, 3.536448502928e-07, 7.8810e+02, 5.4598e+00,
201113-09:40:31,117 nipype.interface INFO:
stdout 2020-11-13T09:40:31.117484: 2DIAGNOSTIC, 91, -5.060045719147e-01, 3.501042726839e-07, 7.9354e+02, 5.4475e+00,
201113-09:40:36,572 nipype.interface INFO:
stdout 2020-11-13T09:40:36.572505: 2DIAGNOSTIC, 92, -5.060045719147e-01, 3.462383517672e-07, 7.9900e+02, 5.4546e+00,
201113-09:40:42,29 nipype.interface INFO:
stdout 2020-11-13T09:40:42.029138: 2DIAGNOSTIC, 93, -5.060045719147e-01, 3.424281374009e-07, 8.0445e+02, 5.4563e+00,
201113-09:40:47,476 nipype.interface INFO:
stdout 2020-11-13T09:40:47.476719: 2DIAGNOSTIC, 94, -5.060045719147e-01, 3.386539333405e-07, 8.0990e+02, 5.4472e+00,
201113-09:40:52,931 nipype.interface INFO:
stdout 2020-11-13T09:40:52.931879: 2DIAGNOSTIC, 95, -5.060045123100e-01, 3.349257156060e-07, 8.1536e+02, 5.4547e+00,
201113-09:40:58,380 nipype.interface INFO:
stdout 2020-11-13T09:40:58.380779: 2DIAGNOSTIC, 96, -5.060044527054e-01, 3.309251326300e-07, 8.2080e+02, 5.4485e+00,
201113-09:41:03,835 nipype.interface INFO:
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201113-09:41:09,287 nipype.interface INFO:
stdout 2020-11-13T09:41:09.287124: 2DIAGNOSTIC, 98, -5.060044527054e-01, 3.233350014398e-07, 8.3171e+02, 5.4508e+00,
201113-09:41:14,752 nipype.interface INFO:
stdout 2020-11-13T09:41:14.752379: 2DIAGNOSTIC, 99, -5.060044527054e-01, 3.194589339728e-07, 8.3717e+02, 5.4649e+00,
201113-09:41:20,203 nipype.interface INFO:
stdout 2020-11-13T09:41:20.203914: 2DIAGNOSTIC, 100, -5.060044527054e-01, 3.161852077938e-07, 8.4263e+02, 5.4512e+00,
201113-09:41:20,204 nipype.interface INFO:
stdout 2020-11-13T09:41:20.204353: Elapsed time (stage 1): 8.4576e+02
201113-09:41:20,204 nipype.interface INFO:
stdout 2020-11-13T09:41:20.204502:
201113-09:41:20,211 nipype.interface INFO:
stdout 2020-11-13T09:41:20.211048:
201113-09:41:20,211 nipype.interface INFO:
stdout 2020-11-13T09:41:20.211217:Stage 2
201113-09:41:20,211 nipype.interface INFO:
stdout 2020-11-13T09:41:20.211361: iterations = 50x10x0
201113-09:41:20,211 nipype.interface INFO:
stdout 2020-11-13T09:41:20.211501: convergence threshold = 1.0000e-09
201113-09:41:20,211 nipype.interface INFO:
stdout 2020-11-13T09:41:20.211632: convergence window size = 15
201113-09:41:20,211 nipype.interface INFO:
stdout 2020-11-13T09:41:20.211760: number of levels = 3
201113-09:41:20,211 nipype.interface INFO:
stdout 2020-11-13T09:41:20.211927: using the CC metric (radius = 4, weight = 5.0000e-01)
201113-09:41:22,888 nipype.interface INFO:
stdout 2020-11-13T09:41:22.888859: preprocessing: winsorizing the image intensities
201113-09:41:22,889 nipype.interface INFO:
stdout 2020-11-13T09:41:22.888859: preprocessing: histogram matching the images
201113-09:41:22,889 nipype.interface INFO:
stdout 2020-11-13T09:41:22.889357: using the CC metric (radius = 4, weight = 5.0000e-01)
201113-09:41:25,635 nipype.interface INFO:
stdout 2020-11-13T09:41:25.635060: preprocessing: winsorizing the image intensities
201113-09:41:25,635 nipype.interface INFO:
stdout 2020-11-13T09:41:25.635060: preprocessing: histogram matching the images
201113-09:41:25,635 nipype.interface INFO:
stdout 2020-11-13T09:41:25.635463: Shrink factors (level 1 out of 3): [4, 4, 4]
201113-09:41:25,635 nipype.interface INFO:
stdout 2020-11-13T09:41:25.635605: Shrink factors (level 2 out of 3): [2, 2, 2]
201113-09:41:25,635 nipype.interface INFO:
stdout 2020-11-13T09:41:25.635738: Shrink factors (level 3 out of 3): [1, 1, 1]
201113-09:41:25,635 nipype.interface INFO:
stdout 2020-11-13T09:41:25.635876: smoothing sigmas per level: [2, 1, 0]
201113-09:41:25,636 nipype.interface INFO:
stdout 2020-11-13T09:41:25.636005: Using default NONE metricSamplingStrategy
201113-09:41:25,769 nipype.interface INFO:
stdout 2020-11-13T09:41:25.769084:
201113-09:41:25,769 nipype.interface INFO:
stdout 2020-11-13T09:41:25.769428:*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) ***
201113-09:41:25,769 nipype.interface INFO:
stdout 2020-11-13T09:41:25.769571:
201113-09:41:52,996 nipype.interface INFO:
stdout 2020-11-13T09:41:52.996504:XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201113-09:41:52,996 nipype.interface INFO:
stdout 2020-11-13T09:41:52.996851: 1DIAGNOSTIC, 1, -4.455187916756e-01, inf, 2.7228e+01, 2.7228e+01,
201113-09:42:11,418 nipype.interface INFO:
stdout 2020-11-13T09:42:11.418285: 1DIAGNOSTIC, 2, -4.560117721558e-01, inf, 4.5649e+01, 1.8421e+01,
201113-09:42:29,715 nipype.interface INFO:
stdout 2020-11-13T09:42:29.715377: 1DIAGNOSTIC, 3, -4.697391688824e-01, inf, 6.3946e+01, 1.8297e+01,
201113-09:42:47,999 nipype.interface INFO:
stdout 2020-11-13T09:42:47.999707: 1DIAGNOSTIC, 4, -4.806709885597e-01, inf, 8.2230e+01, 1.8284e+01,
201113-09:43:06,331 nipype.interface INFO:
stdout 2020-11-13T09:43:06.331085: 1DIAGNOSTIC, 5, -4.909287095070e-01, inf, 1.0056e+02, 1.8331e+01,
201113-09:43:24,670 nipype.interface INFO:
stdout 2020-11-13T09:43:24.670856: 1DIAGNOSTIC, 6, -5.012391209602e-01, inf, 1.1890e+02, 1.8339e+01,
201113-09:43:42,829 nipype.interface INFO:
stdout 2020-11-13T09:43:42.829086: 1DIAGNOSTIC, 7, -5.120248794556e-01, inf, 1.3706e+02, 1.8158e+01,
201113-09:44:01,42 nipype.interface INFO:
stdout 2020-11-13T09:44:01.042761: 1DIAGNOSTIC, 8, -5.236532688141e-01, inf, 1.5527e+02, 1.8213e+01,
201113-09:44:19,477 nipype.interface INFO:
stdout 2020-11-13T09:44:19.475000: 1DIAGNOSTIC, 9, -5.353257060051e-01, inf, 1.7370e+02, 1.8432e+01,
201113-09:44:37,779 nipype.interface INFO:
stdout 2020-11-13T09:44:37.779577: 1DIAGNOSTIC, 10, -5.455182790756e-01, inf, 1.9200e+02, 1.8302e+01,
201113-09:44:55,992 nipype.interface INFO:
stdout 2020-11-13T09:44:55.992162: 1DIAGNOSTIC, 11, -5.542960166931e-01, inf, 2.1022e+02, 1.8212e+01,
201113-09:45:14,244 nipype.interface INFO:
stdout 2020-11-13T09:45:14.243963: 1DIAGNOSTIC, 12, -5.624257326126e-01, inf, 2.2847e+02, 1.8251e+01,
201113-09:45:32,500 nipype.interface INFO:
stdout 2020-11-13T09:45:32.500156: 1DIAGNOSTIC, 13, -5.699304938316e-01, inf, 2.4672e+02, 1.8256e+01,
201113-09:45:50,786 nipype.interface INFO:
stdout 2020-11-13T09:45:50.786766: 1DIAGNOSTIC, 14, -5.769411325455e-01, inf, 2.6501e+02, 1.8286e+01,
201113-09:46:09,69 nipype.interface INFO:
stdout 2020-11-13T09:46:09.069530: 1DIAGNOSTIC, 15, -5.835735797882e-01, 1.115203090012e-02, 2.8329e+02, 1.8282e+01,
201113-09:46:27,327 nipype.interface INFO:
stdout 2020-11-13T09:46:27.327785: 1DIAGNOSTIC, 16, -5.900046825409e-01, 9.949735365808e-03, 3.0155e+02, 1.8258e+01,
201113-09:46:45,620 nipype.interface INFO:
stdout 2020-11-13T09:46:45.620555: 1DIAGNOSTIC, 17, -5.960255861282e-01, 8.836064487696e-03, 3.1984e+02, 1.8292e+01,
201113-09:47:04,16 nipype.interface INFO:
stdout 2020-11-13T09:47:04.016233: 1DIAGNOSTIC, 18, -6.016101837158e-01, 7.874633185565e-03, 3.3824e+02, 1.8395e+01,
201113-09:47:22,366 nipype.interface INFO:
stdout 2020-11-13T09:47:22.366000: 1DIAGNOSTIC, 19, -6.065069437027e-01, 6.992551498115e-03, 3.5659e+02, 1.8349e+01,
201113-09:47:40,876 nipype.interface INFO:
stdout 2020-11-13T09:47:40.876111: 1DIAGNOSTIC, 20, -6.112378835678e-01, 6.180181168020e-03, 3.7510e+02, 1.8510e+01,
201113-09:47:59,87 nipype.interface INFO:
stdout 2020-11-13T09:47:59.087655: 1DIAGNOSTIC, 21, -6.150904893875e-01, 5.430409684777e-03, 3.9331e+02, 1.8211e+01,
201113-09:48:17,368 nipype.interface INFO:
stdout 2020-11-13T09:48:17.368605: 1DIAGNOSTIC, 22, -6.184937953949e-01, 4.751711618155e-03, 4.1159e+02, 1.8281e+01,
201113-09:48:35,894 nipype.interface INFO:
stdout 2020-11-13T09:48:35.894121: 1DIAGNOSTIC, 23, -6.217325925827e-01, 4.161314573139e-03, 4.3011e+02, 1.8525e+01,
201113-09:48:54,188 nipype.interface INFO:
stdout 2020-11-13T09:48:54.188840: 1DIAGNOSTIC, 24, -6.243404150009e-01, 3.654490457848e-03, 4.4841e+02, 1.8294e+01,
201113-09:49:12,492 nipype.interface INFO:
stdout 2020-11-13T09:49:12.492119: 1DIAGNOSTIC, 25, -6.263108253479e-01, 3.204826032743e-03, 4.6671e+02, 1.8303e+01,
201113-09:49:30,814 nipype.interface INFO:
stdout 2020-11-13T09:49:30.814462: 1DIAGNOSTIC, 26, -6.284825205803e-01, 2.801445778459e-03, 4.8503e+02, 1.8322e+01,
201113-09:49:49,181 nipype.interface INFO:
stdout 2020-11-13T09:49:49.181315: 1DIAGNOSTIC, 27, -6.300906538963e-01, 2.434729831293e-03, 5.0340e+02, 1.8366e+01,
201113-09:50:07,612 nipype.interface INFO:
stdout 2020-11-13T09:50:07.612140: 1DIAGNOSTIC, 28, -6.316478252411e-01, 2.102957572788e-03, 5.2183e+02, 1.8430e+01,
201113-09:50:25,888 nipype.interface INFO:
stdout 2020-11-13T09:50:25.888480: 1DIAGNOSTIC, 29, -6.331728100777e-01, 1.805964275263e-03, 5.4011e+02, 1.8276e+01,
201113-09:50:44,182 nipype.interface INFO:
stdout 2020-11-13T09:50:44.182024: 1DIAGNOSTIC, 30, -6.346408128738e-01, 1.544131431729e-03, 5.5840e+02, 1.8293e+01,
201113-09:51:02,611 nipype.interface INFO:
stdout 2020-11-13T09:51:02.611923: 1DIAGNOSTIC, 31, -6.360011100769e-01, 1.318680355325e-03, 5.7683e+02, 1.8429e+01,
201113-09:51:20,925 nipype.interface INFO:
stdout 2020-11-13T09:51:20.925913: 1DIAGNOSTIC, 32, -6.372795104980e-01, 1.128031639382e-03, 5.9514e+02, 1.8314e+01,
201113-09:51:39,202 nipype.interface INFO:
stdout 2020-11-13T09:51:39.202867: 1DIAGNOSTIC, 33, -6.386737227440e-01, 9.717688080855e-04, 6.1342e+02, 1.8277e+01,
201113-09:51:57,579 nipype.interface INFO:
stdout 2020-11-13T09:51:57.579839: 1DIAGNOSTIC, 34, -6.400105357170e-01, 8.442633552477e-04, 6.3179e+02, 1.8377e+01,
201113-09:52:15,882 nipype.interface INFO:
stdout 2020-11-13T09:52:15.882022: 1DIAGNOSTIC, 35, -6.411845684052e-01, 7.439712644555e-04, 6.5010e+02, 1.8301e+01,
201113-09:52:34,153 nipype.interface INFO:
stdout 2020-11-13T09:52:34.153759: 1DIAGNOSTIC, 36, -6.423890590668e-01, 6.638107588515e-04, 6.6837e+02, 1.8271e+01,
201113-09:52:52,469 nipype.interface INFO:
stdout 2020-11-13T09:52:52.469390: 1DIAGNOSTIC, 37, -6.435413360596e-01, 5.999907152727e-04, 6.8668e+02, 1.8315e+01,
201113-09:53:10,903 nipype.interface INFO:
stdout 2020-11-13T09:53:10.903351: 1DIAGNOSTIC, 38, -6.446528434753e-01, 5.513838841580e-04, 7.0512e+02, 1.8433e+01,
201113-09:53:29,235 nipype.interface INFO:
stdout 2020-11-13T09:53:29.235128: 1DIAGNOSTIC, 39, -6.456495523453e-01, 5.118703120388e-04, 7.2345e+02, 1.8331e+01,
201113-09:53:47,546 nipype.interface INFO:
stdout 2020-11-13T09:53:47.546296: 1DIAGNOSTIC, 40, -6.466001272202e-01, 4.761034215335e-04, 7.4176e+02, 1.8311e+01,
201113-09:54:05,907 nipype.interface INFO:
stdout 2020-11-13T09:54:05.907288: 1DIAGNOSTIC, 41, -6.476410627365e-01, 4.471946158446e-04, 7.6012e+02, 1.8361e+01,
201113-09:54:24,242 nipype.interface INFO:
stdout 2020-11-13T09:54:24.242586: 1DIAGNOSTIC, 42, -6.484889388084e-01, 4.193831700832e-04, 7.7845e+02, 1.8335e+01,
201113-09:54:42,719 nipype.interface INFO:
stdout 2020-11-13T09:54:42.719578: 1DIAGNOSTIC, 43, -6.492924690247e-01, 3.925943456125e-04, 7.9693e+02, 1.8477e+01,
201113-09:55:01,47 nipype.interface INFO:
stdout 2020-11-13T09:55:01.047085: 1DIAGNOSTIC, 44, -6.499606370926e-01, 3.662452800199e-04, 8.1526e+02, 1.8327e+01,
201113-09:55:19,397 nipype.interface INFO:
stdout 2020-11-13T09:55:19.397791: 1DIAGNOSTIC, 45, -6.505401134491e-01, 3.400217101444e-04, 8.3361e+02, 1.8350e+01,
201113-09:55:37,754 nipype.interface INFO:
stdout 2020-11-13T09:55:37.754575: 1DIAGNOSTIC, 46, -6.511429548264e-01, 3.140834451187e-04, 8.5196e+02, 1.8356e+01,
201113-09:55:56,67 nipype.interface INFO:
stdout 2020-11-13T09:55:56.067045: 1DIAGNOSTIC, 47, -6.516861915588e-01, 2.881578111555e-04, 8.7028e+02, 1.8312e+01,
201113-09:56:14,550 nipype.interface INFO:
stdout 2020-11-13T09:56:14.550647: 1DIAGNOSTIC, 48, -6.522549390793e-01, 2.640046586748e-04, 8.8876e+02, 1.8483e+01,
201113-09:56:32,869 nipype.interface INFO:
stdout 2020-11-13T09:56:32.869039: 1DIAGNOSTIC, 49, -6.526434421539e-01, 2.407116699032e-04, 9.0708e+02, 1.8318e+01,
201113-09:56:51,229 nipype.interface INFO:
stdout 2020-11-13T09:56:51.229423: 1DIAGNOSTIC, 50, -6.531264185905e-01, 2.185561752412e-04, 9.2544e+02, 1.8360e+01,
201113-09:59:18,502 nipype.interface INFO:
stdout 2020-11-13T09:59:18.502824:XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
201113-09:59:18,505 nipype.interface INFO:
stdout 2020-11-13T09:59:18.505331: 1DIAGNOSTIC, 1, -5.210231542587e-01, inf, 1.0727e+03, 1.4728e+02,
201113-10:01:40,666 nipype.interface INFO:
stdout 2020-11-13T10:01:40.666010: 1DIAGNOSTIC, 2, -5.232590436935e-01, inf, 1.2149e+03, 1.4216e+02,
slurmstepd: error: *** JOB 22509334 ON node122 CANCELLED AT 2020-11-13T10:03:51 DUE TO TIME LIMIT ***