slurm-22509335.out • 📓 Jon's Lab Notebook

mkdir: cannot create directory ‘/rigel/psych/users/av2902/sb_cpac/preproc/’: File exists
[33mWARNING:[0m skipping mount of /rigel/psych/users/av2902/sb_cpac/scratch: no such file or directory

Running BIDS validator
#### Running C-PAC for sub-303
Number of participants to run in parallel: 1
Input directory: /bids_dataset
Output directory: /outputs/output
Working directory: /outputs/tmp
Crash directory: /outputs/crash
Log directory: /outputs/log
Remove working directory: False
Available memory: 100.0 (GB)
Available threads: 1
Number of threads for ANTs: 1
Parsing /bids_dataset..
Starting participant level processing
Run called with config file /outputs/cpac_pipeline_config_2020-11-12T22-05-30Z.yml
201112-22:05:43,329 nipype.workflow INFO:
	 

    C-PAC version: 1.7.2

    Setting maximum number of cores per participant to 1
    Setting number of participants at once to 1
    Setting OMP_NUM_THREADS to 1
    Setting MKL_NUM_THREADS to 1
    Setting ANTS/ITK thread usage to 1
    Maximum potential number of cores that might be used during this run: 1


201112-22:05:49,65 nipype.workflow INFO:
	 

Pipeline building completed.


201112-22:05:49,65 nipype.workflow INFO:
	 

Strategy forks:
- cpac_fmriprep-options


201112-22:05:55,61 nipype.workflow INFO:
	 Workflow resting_preproc_sub-026_ses-2 settings: ['check', 'execution', 'logging', 'monitoring']
201112-22:05:55,883 nipype.workflow INFO:
	 Running serially.
201112-22:05:55,889 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-2/select_scan_params".
201112-22:05:55,927 nipype.workflow INFO:
	 [Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:05:56,184 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-2.func_gather_0.select_scan_params" (/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-2/select_scan_params)
201112-22:05:56,210 nipype.workflow ERROR:
	 Node select_scan_params.b4 failed to run on host node093.
201112-22:05:56,259 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-220556-av2902-select_scan_params.b4-a4b8846b-91d9-4b22-99c8-daa8b573813f.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:05:56,267 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-2/selectrest".
201112-22:05:56,292 nipype.workflow INFO:
	 [Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:05:56,538 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-2.func_gather_0.selectrest" (/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-2/selectrest)
201112-22:05:56,562 nipype.workflow ERROR:
	 Node selectrest.b4 failed to run on host node093.
201112-22:05:56,565 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-220556-av2902-selectrest.b4-b7833ce1-4cd6-40bb-9586-01870e6f9ba8.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:05:56,580 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-2/check_func_scan".
201112-22:05:56,604 nipype.workflow INFO:
	 [Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:05:56,847 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan" (/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-2/check_func_scan)
201112-22:05:56,869 nipype.workflow ERROR:
	 Node check_func_scan.b4 failed to run on host node093.
201112-22:05:56,873 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-220556-av2902-check_func_scan.b4-637714e9-3fe8-4d01-9b33-06db525822ca.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:05:56,885 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-1/select_scan_params".
201112-22:05:56,911 nipype.workflow INFO:
	 [Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:05:57,205 nipype.workflow ERROR:
	 Node select_scan_params.b3 failed to run on host node093.
201112-22:05:57,229 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-220557-av2902-select_scan_params.b3-a0a89daf-2aee-47cb-ab8f-f0a4889e8e93.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-1/select_scan_params/_0xba8bc81d138dd320977381d2e318b802_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-1/select_scan_params/_0xba8bc81d138dd320977381d2e318b802.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-1/select_scan_params/_0xba8bc81d138dd320977381d2e318b802_unfinished.json'

201112-22:05:57,249 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-1/selectrest".
201112-22:05:57,330 nipype.workflow INFO:
	 [Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:05:57,596 nipype.workflow ERROR:
	 Node selectrest.b3 failed to run on host node093.
201112-22:05:57,606 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-220557-av2902-selectrest.b3-b598b339-a138-411c-bfb9-86095f27a209.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-1/selectrest/_0xb28dcda32384116366dc4e3850647d38_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-1/selectrest/_0xb28dcda32384116366dc4e3850647d38.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-1/selectrest/_0xb28dcda32384116366dc4e3850647d38_unfinished.json'

201112-22:05:57,620 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-1/check_func_scan".
201112-22:05:57,703 nipype.workflow INFO:
	 [Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:05:57,971 nipype.workflow ERROR:
	 Node check_func_scan.b3 failed to run on host node093.
201112-22:05:57,981 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-220557-av2902-check_func_scan.b3-045770fb-5513-489c-8485-63277f569b78.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-1/check_func_scan/_0x06e79c88a87a2d9b63dfffa9624e9b46_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-1/check_func_scan/_0x06e79c88a87a2d9b63dfffa9624e9b46.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-1/check_func_scan/_0x06e79c88a87a2d9b63dfffa9624e9b46_unfinished.json'

201112-22:05:57,994 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_rest_run-1/select_scan_params".
201112-22:05:58,81 nipype.workflow INFO:
	 [Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:05:58,353 nipype.workflow ERROR:
	 Node select_scan_params.b2 failed to run on host node093.
201112-22:05:58,364 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-220558-av2902-select_scan_params.b2-56b9681b-6399-4b4c-be3c-87e4421ff524.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_rest_run-1/select_scan_params/_0x3f91034bc8ad51786cf917ab092c779c_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_rest_run-1/select_scan_params/_0x3f91034bc8ad51786cf917ab092c779c.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_rest_run-1/select_scan_params/_0x3f91034bc8ad51786cf917ab092c779c_unfinished.json'

201112-22:05:58,377 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_rest_run-1/selectrest".
201112-22:05:58,476 nipype.workflow ERROR:
	 Node selectrest.b2 failed to run on host node094.
201112-22:05:58,487 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-220558-av2902-selectrest.b2-89ed0d45-af9e-48e8-a889-53266c1c7861.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 449, in run
    emptydirs(outdir, noexist_ok=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 828, in emptydirs
    raise ex
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 818, in emptydirs
    shutil.rmtree(path)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 498, in rmtree
    onerror(os.rmdir, path, sys.exc_info())
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 496, in rmtree
    os.rmdir(path)
OSError: [Errno 39] Directory not empty: '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_rest_run-1/selectrest'

201112-22:05:58,510 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_rest_run-1/check_func_scan".
201112-22:05:58,585 nipype.workflow ERROR:
	 Node check_func_scan.b2 failed to run on host node093.
201112-22:05:58,592 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-220558-av2902-check_func_scan.b2-cda0c324-1b35-4f7f-92f1-a0fb43c6eaf2.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 449, in run
    emptydirs(outdir, noexist_ok=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 828, in emptydirs
    raise ex
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 818, in emptydirs
    shutil.rmtree(path)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 498, in rmtree
    onerror(os.rmdir, path, sys.exc_info())
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 496, in rmtree
    os.rmdir(path)
OSError: [Errno 39] Directory not empty: '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_rest_run-1/check_func_scan'

201112-22:05:58,599 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_depletion_run-2/select_scan_params".
201112-22:05:58,625 nipype.workflow INFO:
	 [Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:05:58,901 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_gather_0.select_scan_params".
201112-22:05:58,923 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_depletion_run-2/s3_scan_params".
201112-22:05:58,949 nipype.workflow INFO:
	 [Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:05:59,190 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_gather_0.s3_scan_params".
201112-22:05:59,202 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/scan_params_0".
201112-22:05:59,215 nipype.workflow INFO:
	 [Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:05:59,459 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.scan_params_0".
201112-22:05:59,473 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_depletion_run-2/selectrest".
201112-22:05:59,508 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_gather_0.selectrest" - collecting precomputed outputs
201112-22:05:59,508 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_gather_0.selectrest" found cached.
201112-22:05:59,517 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_depletion_run-2/check_for_s3".
201112-22:05:59,617 nipype.workflow INFO:
	 [Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:05:59,863 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_gather_0.check_for_s3".
201112-22:05:59,872 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-026_ses-2/edit_func_0/_scan_depletion_run-2/func_get_idx".
201112-22:05:59,883 nipype.workflow INFO:
	 [Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:06:00,122 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.edit_func_0.func_get_idx".
201112-22:06:00,136 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-026_ses-2/edit_func_0/_scan_depletion_run-2/func_drop_trs".
201112-22:06:00,150 nipype.workflow INFO:
	 [Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-026/ses-2/func/sub-026_ses-2_task-depletion_run-2_bold.nii.gz[0..126] -expr "a" -prefix sub-026_ses-2_task-depletion_run-2_bold_calc.nii.gz
201112-22:06:00,406 nipype.interface INFO:
	 stderr 2020-11-12T22:06:00.406074:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:06:00,413 nipype.interface INFO:
	 stderr 2020-11-12T22:06:00.413017:++ Authored by: A cast of thousands
201112-22:06:06,76 nipype.interface INFO:
	 stderr 2020-11-12T22:06:06.076177:++ Output dataset ./sub-026_ses-2_task-depletion_run-2_bold_calc.nii.gz
201112-22:06:06,269 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.edit_func_0.func_drop_trs".
201112-22:06:06,274 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique".
201112-22:06:06,326 nipype.workflow INFO:
	 [Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-026_ses-2_task-depletion_run-2_bold_calc.nii.gz
201112-22:06:06,745 nipype.interface INFO:
	 stderr 2020-11-12T22:06:06.745688:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:06:06,746 nipype.interface INFO:
	 stderr 2020-11-12T22:06:06.746083:++ Authored by: RW Cox
201112-22:06:06,775 nipype.interface INFO:
	 stderr 2020-11-12T22:06:06.775673:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-026_ses-2_task-depletion_run-2_bold_calc.nii.gz
201112-22:06:06,776 nipype.interface INFO:
	 stderr 2020-11-12T22:06:06.776441: + deoblique
201112-22:06:06,776 nipype.interface INFO:
	 stderr 2020-11-12T22:06:06.776647: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-026_ses-2_task-depletion_run-2_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-026_ses-2_task-depletion_run-2_bold_calc.nii.gz in NIFTI storage)
201112-22:06:10,497 nipype.interface INFO:
	 stderr 2020-11-12T22:06:10.497371:++ 3drefit processed 1 datasets
201112-22:06:10,684 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:06:10,690 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient".
201112-22:06:10,698 nipype.workflow INFO:
	 [Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-026_ses-2_task-depletion_run-2_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient/sub-026_ses-2_task-depletion_run-2_bold_calc.nii.gz
201112-22:06:15,123 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:06:15,135 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI".
201112-22:06:15,144 nipype.workflow INFO:
	 [Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-026_ses-2_task-depletion_run-2_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI/sub-026_ses-2_task-depletion_run-2_bold_calc_resample.nii.gz
201112-22:06:15,550 nipype.interface INFO:
	 stderr 2020-11-12T22:06:15.549869:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:06:15,550 nipype.interface INFO:
	 stderr 2020-11-12T22:06:15.550704:++ Authored by: KR Hammett & RW Cox
201112-22:06:16,31 nipype.interface INFO:
	 stderr 2020-11-12T22:06:16.031404:++ Output dataset ./sub-026_ses-2_task-depletion_run-2_bold_calc_resample_tstat.nii.gz
201112-22:06:16,178 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:06:16,180 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_generate_ref".
201112-22:06:16,187 nipype.workflow INFO:
	 [Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-026_ses-2_task-depletion_run-2_bold_calc_resample.1D -1Dmatrix_save sub-026_ses-2_task-depletion_run-2_bold_calc_resample.aff12.1D -prefix sub-026_ses-2_task-depletion_run-2_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI/sub-026_ses-2_task-depletion_run-2_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-026_ses-2_task-depletion_run-2_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_generate_ref/sub-026_ses-2_task-depletion_run-2_bold_calc_resample.nii.gz
201112-22:06:16,456 nipype.interface INFO:
	 stderr 2020-11-12T22:06:16.456142:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:06:16,463 nipype.interface INFO:
	 stderr 2020-11-12T22:06:16.463901:++ Authored by: RW Cox
201112-22:06:16,482 nipype.interface INFO:
	 stderr 2020-11-12T22:06:16.482909:++ Coarse del was 10, replaced with 3
201112-22:08:13,443 nipype.interface INFO:
	 stderr 2020-11-12T22:08:13.443653:++ Max displacement in automask = 13.38 (mm) at sub-brick 115
201112-22:08:13,451 nipype.interface INFO:
	 stderr 2020-11-12T22:08:13.451461:++ Max delta displ  in automask = 15.52 (mm) at sub-brick 106
201112-22:08:17,13 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:08:17,27 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion".
201112-22:08:17,35 nipype.workflow INFO:
	 [Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-026_ses-2_task-depletion_run-2_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion/sub-026_ses-2_task-depletion_run-2_bold_calc_resample_volreg.nii.gz
201112-22:08:17,292 nipype.interface INFO:
	 stderr 2020-11-12T22:08:17.291863:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:08:17,292 nipype.interface INFO:
	 stderr 2020-11-12T22:08:17.292487:++ Authored by: KR Hammett & RW Cox
201112-22:08:17,753 nipype.interface INFO:
	 stderr 2020-11-12T22:08:17.753652:++ Output dataset ./sub-026_ses-2_task-depletion_run-2_bold_calc_resample_volreg_tstat.nii.gz
201112-22:08:17,895 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:08:17,896 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt".
201112-22:08:17,903 nipype.workflow INFO:
	 [Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient/sub-026_ses-2_task-depletion_run-2_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt/sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion/sub-026_ses-2_task-depletion_run-2_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:08:41,866 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:08:41,888 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-026_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/calculate_FDJ".
201112-22:08:41,902 nipype.workflow INFO:
	 [Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:08:42,131 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:08:42,132 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/sinker_0_frame_wise_displacement_jenkinson".
201112-22:08:42,140 nipype.workflow INFO:
	 [Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:08:42,385 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201112-22:08:42,386 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/sinker_0_max_displacement".
201112-22:08:42,395 nipype.workflow INFO:
	 [Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:08:42,630 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_max_displacement".
201112-22:08:42,632 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/sinker_0_coordinate_transformation".
201112-22:08:42,651 nipype.workflow INFO:
	 [Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:08:42,919 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_coordinate_transformation".
201112-22:08:42,944 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull".
201112-22:08:42,961 nipype.workflow INFO:
	 [Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull/sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf.nii.gz
201112-22:08:43,217 nipype.interface INFO:
	 stderr 2020-11-12T22:08:43.217644:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:08:43,218 nipype.interface INFO:
	 stderr 2020-11-12T22:08:43.218455:++ Authored by: KR Hammett & RW Cox
201112-22:08:43,703 nipype.interface INFO:
	 stderr 2020-11-12T22:08:43.703175:++ Output dataset ./sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat.nii.gz
201112-22:08:43,852 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:08:43,859 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass".
201112-22:08:43,866 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull/sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:08:45,692 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:08:45,706 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate".
201112-22:08:45,713 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate/sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:08:46,366 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:08:46,368 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_mask".
201112-22:08:46,375 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate/sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_mask/sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:08:46,783 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:08:46,784 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/unifize".
201112-22:08:46,793 nipype.workflow INFO:
	 [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/unifize/sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:08:47,69 nipype.interface INFO:
	 stderr 2020-11-12T22:08:47.069189:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:08,423 nipype.interface INFO:
	 stderr 2020-11-12T22:10:08.423859: + Pre-processing: IAV..UW[s5003]Im
201112-22:10:08,443 nipype.interface INFO:
	 stderr 2020-11-12T22:10:08.443243:++ Output dataset ./uni.nii.gz
201112-22:10:08,443 nipype.interface INFO:
	 stderr 2020-11-12T22:10:08.443521:++ ===== Elapsed = 81.4 sec
201112-22:10:08,610 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:10:08,620 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass".
201112-22:10:08,630 nipype.workflow INFO:
	 [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:10:09,15 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.015789:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:09,23 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.023592:++ Authored by: Emperor Zhark
201112-22:10:09,31 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.031414:++ Loading dataset /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:10:09,35 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.035010:++ Forming automask
201112-22:10:09,38 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.038369: + Fixed clip level = 349.161041
201112-22:10:09,43 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.043784: + Used gradual clip level = 310.120544 .. 431.521820
201112-22:10:09,44 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.044832: + Number voxels above clip level = 35749
201112-22:10:09,44 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.044832: + Clustering voxels ...
201112-22:10:09,45 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.045395: + Largest cluster has 35749 voxels
201112-22:10:09,46 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.046758: + Clustering voxels ...
201112-22:10:09,48 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.047978: + Largest cluster has 35568 voxels
201112-22:10:09,51 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.051317: + Filled   390 voxels in small holes; now have 35958 voxels
201112-22:10:09,53 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.053516: + Filled     2 voxels in large holes; now have 35960 voxels
201112-22:10:09,54 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.054818: + Clustering voxels ...
201112-22:10:09,56 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.056046: + Largest cluster has 35960 voxels
201112-22:10:09,56 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.056290: + Clustering non-brain voxels ...
201112-22:10:09,56 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.056447: + Clustering voxels ...
201112-22:10:09,59 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.059750: + Largest cluster has 103288 voxels
201112-22:10:09,60 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.060103: + Mask now has 35976 voxels
201112-22:10:09,60 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.060269:++ Dilating automask
201112-22:10:09,68 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.068249: + Clustering voxels ...
201112-22:10:09,70 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.070581: + Largest cluster has 97631 voxels
201112-22:10:09,70 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.070928:++ 41633 voxels in the mask [out of 139264: 29.90%]
201112-22:10:09,71 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.071108:++ first  11 x-planes are zero [from R]
201112-22:10:09,71 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.071278:++ last    9 x-planes are zero [from L]
201112-22:10:09,71 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.071422:++ first   0 y-planes are zero [from P]
201112-22:10:09,71 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.071578:++ last    7 y-planes are zero [from A]
201112-22:10:09,74 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.074795:++ first   0 z-planes are zero [from I]
201112-22:10:09,85 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.074795:++ last    3 z-planes are zero [from S]
201112-22:10:09,96 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.096564:++ Output dataset ./uni_mask.nii.gz
201112-22:10:09,107 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.096564:++ applying mask to original data
201112-22:10:09,118 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.096564:++ Writing masked data
201112-22:10:09,128 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.096564:++ Output dataset ./uni_masked.nii.gz
201112-22:10:09,137 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.096564:++ CPU time = 0.000000 sec
201112-22:10:09,310 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:10:09,324 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks".
201112-22:10:09,343 nipype.workflow INFO:
	 [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks/sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:10:09,743 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:10:09,756 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-026_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/cal_DVARS".
201112-22:10:09,772 nipype.workflow INFO:
	 [Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-22:10:10,523 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-22:10:10,541 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_extract_brain".
201112-22:10:10,560 nipype.workflow INFO:
	 [Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt/sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks/sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc.nii.gz
201112-22:10:10,808 nipype.interface INFO:
	 stderr 2020-11-12T22:10:10.808205:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:10,815 nipype.interface INFO:
	 stderr 2020-11-12T22:10:10.815128:++ Authored by: A cast of thousands
201112-22:10:13,607 nipype.interface INFO:
	 stderr 2020-11-12T22:10:13.607297:++ Output dataset ./sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc.nii.gz
201112-22:10:13,777 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:10:13,786 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize".
201112-22:10:13,794 nipype.workflow INFO:
	 [Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_extract_brain/sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize/sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-22:10:16,1 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:10:16,17 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mask_normalize".
201112-22:10:16,25 nipype.workflow INFO:
	 [Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize/sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mask_normalize/sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:10:17,18 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:10:17,33 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mean".
201112-22:10:17,40 nipype.workflow INFO:
	 [Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mean/sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc.nii.gz
201112-22:10:17,282 nipype.interface INFO:
	 stderr 2020-11-12T22:10:17.282162:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:17,289 nipype.interface INFO:
	 stderr 2020-11-12T22:10:17.289515:++ Authored by: KR Hammett & RW Cox
201112-22:10:17,583 nipype.interface INFO:
	 stderr 2020-11-12T22:10:17.583862:++ Output dataset ./sub-026_ses-2_task-depletion_run-2_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-22:10:17,760 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:10:17,773 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/norm_motion_params".
201112-22:10:17,781 nipype.workflow INFO:
	 [Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:10:18,14 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:10:18,28 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-026_ses-2/qc_motion_0/_scan_depletion_run-2/motion_plot".
201112-22:10:18,37 nipype.workflow INFO:
	 [Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-22:10:18,633 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.qc_motion_0.motion_plot".
201112-22:10:18,646 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/sinker_0_qc___movement_trans_plot".
201112-22:10:18,655 nipype.workflow INFO:
	 [Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:10:18,872 nipype.interface INFO:
	 sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-026_ses-2/qc___movement_trans_plot/_scan_depletion_run-2/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-026_ses-2/qc/movement_trans_plot/_scan_depletion_run-2/motion_trans_plot.png
201112-22:10:18,905 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_qc___movement_trans_plot".
201112-22:10:18,919 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/sinker_0_qc___movement_rot_plot".
201112-22:10:18,928 nipype.workflow INFO:
	 [Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:10:19,141 nipype.interface INFO:
	 sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-026_ses-2/qc___movement_rot_plot/_scan_depletion_run-2/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-026_ses-2/qc/movement_rot_plot/_scan_depletion_run-2/motion_rot_plot.png
201112-22:10:19,178 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_qc___movement_rot_plot".
201112-22:10:19,186 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-026_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/calc_motion_parameters".
201112-22:10:19,195 nipype.workflow INFO:
	 [Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:10:19,435 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-22:10:19,450 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/sinker_0_motion_params".
201112-22:10:19,460 nipype.workflow INFO:
	 [Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:10:19,699 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_motion_params".
201112-22:10:19,713 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-026_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/calculate_FD".
201112-22:10:19,718 nipype.workflow INFO:
	 [Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-22:10:19,955 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-22:10:19,969 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/sinker_0_frame_wise_displacement_power".
201112-22:10:19,980 nipype.workflow INFO:
	 [Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:10:20,221 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_frame_wise_displacement_power".
201112-22:10:20,235 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-026_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/calc_power_parameters".
201112-22:10:20,244 nipype.workflow INFO:
	 [Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:10:20,480 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-22:10:20,495 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/sinker_0_power_params".
201112-22:10:20,504 nipype.workflow INFO:
	 [Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:10:20,743 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_power_params".
201112-22:10:20,757 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/sinker_0_movement_parameters".
201112-22:10:20,767 nipype.workflow INFO:
	 [Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:10:21,10 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_movement_parameters".
201112-22:10:21,25 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/func_despiked_0".
201112-22:10:21,34 nipype.workflow INFO:
	 [Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-026_ses-2_task-depletion_run-2_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/func_despiked_0/sub-026_ses-2_task-depletion_run-2_bold_calc.nii.gz
201112-22:10:21,358 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.358265:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:21,365 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.365170:++ Authored by: RW Cox
201112-22:10:21,375 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.375783:[7m*+ WARNING:[0m   If you are performing spatial transformations on an oblique dset, 
201112-22:10:21,376 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.375783:  such as /outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/func_despiked_0/sub-026_ses-2_task-depletion_run-2_bold_calc.nii.gz,
201112-22:10:21,376 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.375783:  or viewing/combining it with volumes of differing obliquity,
201112-22:10:21,376 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.375783:  you should consider running: 
201112-22:10:21,376 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.375783:     3dWarp -deoblique 
201112-22:10:21,376 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.375783:  on this and  other oblique datasets in the same session.
201112-22:10:21,376 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.375783: See 3dWarp -help for details.
201112-22:10:21,376 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.376822:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/func_despiked_0/sub-026_ses-2_task-depletion_run-2_bold_calc.nii.gz is 17.699196 degrees from plumb.
201112-22:10:21,377 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.377060:++ Input dataset is in short format, but output will be in float format
201112-22:10:21,377 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.377268:++ ignoring first 0 time points, using last 127
201112-22:10:21,377 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.377474:++ using 127 time points => -corder 4
201112-22:10:21,377 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.377677:++ Loading dataset /outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/func_despiked_0/sub-026_ses-2_task-depletion_run-2_bold_calc.nii.gz
201112-22:10:21,939 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.939093:++ 39463 voxels in the automask [out of 139264 in dataset]
201112-22:10:21,945 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.945589:++ 60824 voxels in the dilated automask [out of 139264 in dataset]
201112-22:10:21,955 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.955802:++ Procesing time series with OLD model fit algorithm
201112-22:10:21,956 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.955989:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-22:10:21,956 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.956150: +   [ 3.457% .. 0.072% of normal distribution]
201112-22:10:21,957 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.957388: +   [ 8.839% .. 3.125% of Laplace distribution]
201112-22:10:21,957 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.957572:++ start OpenMP thread #0
201112-22:10:27,783 nipype.interface INFO:
	 stderr 2020-11-12T22:10:27.783507:..........................
201112-22:10:27,784 nipype.interface INFO:
	 stderr 2020-11-12T22:10:27.783992:++ Elapsed despike time =  5s 826ms
201112-22:10:27,784 nipype.interface INFO:
	 stderr 2020-11-12T22:10:27.784142:
201112-22:10:27,785 nipype.interface INFO:
	 stderr 2020-11-12T22:10:27.784982:++ FINAL: 7724648 data points, 894277 edits [11.577%], 292033 big edits [3.781%]
201112-22:10:31,809 nipype.interface INFO:
	 stderr 2020-11-12T22:10:31.808990:++ Output dataset ./sub-026_ses-2_task-depletion_run-2_bold_calc_despike.nii.gz
201112-22:10:31,995 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_despiked_0".
201112-22:10:32,6 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_slice_timing_correction_0/_scan_depletion_run-2/slice_timing".
201112-22:10:32,16 nipype.interface WARNING:
	 Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:10:32,17 nipype.workflow INFO:
	 [Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-026_ses-2/func_slice_timing_correction_0/_scan_depletion_run-2/slice_timing/sub-026_ses-2_task-depletion_run-2_bold_calc_despike.nii.gz
201112-22:10:32,230 nipype.interface WARNING:
	 Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:10:32,449 nipype.interface INFO:
	 stderr 2020-11-12T22:10:32.449417:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:32,466 nipype.interface INFO:
	 stderr 2020-11-12T22:10:32.466792:[7m*+ WARNING:[0m   If you are performing spatial transformations on an oblique dset, 
201112-22:10:32,466 nipype.interface INFO:
	 stderr 2020-11-12T22:10:32.466792:  such as /outputs/tmp/resting_preproc_sub-026_ses-2/func_slice_timing_correction_0/_scan_depletion_run-2/slice_timing/sub-026_ses-2_task-depletion_run-2_bold_calc_despike.nii.gz,
201112-22:10:32,468 nipype.interface INFO:
	 stderr 2020-11-12T22:10:32.466792:  or viewing/combining it with volumes of differing obliquity,
201112-22:10:32,468 nipype.interface INFO:
	 stderr 2020-11-12T22:10:32.466792:  you should consider running: 
201112-22:10:32,468 nipype.interface INFO:
	 stderr 2020-11-12T22:10:32.466792:     3dWarp -deoblique 
201112-22:10:32,468 nipype.interface INFO:
	 stderr 2020-11-12T22:10:32.466792:  on this and  other oblique datasets in the same session.
201112-22:10:32,468 nipype.interface INFO:
	 stderr 2020-11-12T22:10:32.466792: See 3dWarp -help for details.
201112-22:10:32,468 nipype.interface INFO:
	 stderr 2020-11-12T22:10:32.468775:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-026_ses-2/func_slice_timing_correction_0/_scan_depletion_run-2/slice_timing/sub-026_ses-2_task-depletion_run-2_bold_calc_despike.nii.gz is 17.699196 degrees from plumb.
201112-22:10:36,792 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_slice_timing_correction_0.slice_timing".
201112-22:10:36,806 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique".
201112-22:10:36,882 nipype.workflow INFO:
	 [Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz
201112-22:10:37,133 nipype.interface INFO:
	 stderr 2020-11-12T22:10:37.133448:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:37,133 nipype.interface INFO:
	 stderr 2020-11-12T22:10:37.133795:++ Authored by: RW Cox
201112-22:10:37,146 nipype.interface INFO:
	 stderr 2020-11-12T22:10:37.146711:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz
201112-22:10:37,147 nipype.interface INFO:
	 stderr 2020-11-12T22:10:37.147657: + deoblique
201112-22:10:37,148 nipype.interface INFO:
	 stderr 2020-11-12T22:10:37.148492: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_deoblique/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-22:10:39,324 nipype.interface INFO:
	 stderr 2020-11-12T22:10:39.324571:++ 3drefit processed 1 datasets
201112-22:10:39,498 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:10:39,507 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient".
201112-22:10:39,514 nipype.workflow INFO:
	 [Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift.nii.gz
201112-22:10:42,312 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:10:42,327 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI".
201112-22:10:42,335 nipype.workflow INFO:
	 [Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.nii.gz
201112-22:10:42,587 nipype.interface INFO:
	 stderr 2020-11-12T22:10:42.587622:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:42,588 nipype.interface INFO:
	 stderr 2020-11-12T22:10:42.588653:++ Authored by: KR Hammett & RW Cox
201112-22:10:43,186 nipype.interface INFO:
	 stderr 2020-11-12T22:10:43.186313:++ Output dataset ./sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-22:10:43,332 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:10:43,333 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_generate_ref".
201112-22:10:43,342 nipype.workflow INFO:
	 [Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_RPI/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_generate_ref/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.nii.gz
201112-22:10:43,583 nipype.interface INFO:
	 stderr 2020-11-12T22:10:43.583160:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:43,584 nipype.interface INFO:
	 stderr 2020-11-12T22:10:43.584195:++ Authored by: RW Cox
201112-22:10:43,592 nipype.interface INFO:
	 stderr 2020-11-12T22:10:43.592141:++ Coarse del was 10, replaced with 3
201112-22:12:37,518 nipype.interface INFO:
	 stderr 2020-11-12T22:12:37.518697:++ Max displacement in automask = 12.05 (mm) at sub-brick 115
201112-22:12:37,537 nipype.interface INFO:
	 stderr 2020-11-12T22:12:37.537467:++ Max delta displ  in automask = 13.48 (mm) at sub-brick 106
201112-22:12:42,214 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:12:42,236 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion".
201112-22:12:42,244 nipype.workflow INFO:
	 [Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-22:12:42,497 nipype.interface INFO:
	 stderr 2020-11-12T22:12:42.497545:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:12:42,498 nipype.interface INFO:
	 stderr 2020-11-12T22:12:42.498183:++ Authored by: KR Hammett & RW Cox
201112-22:12:43,270 nipype.interface INFO:
	 stderr 2020-11-12T22:12:43.270105:++ Output dataset ./sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-22:12:43,422 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:12:43,430 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt".
201112-22:12:43,438 nipype.workflow INFO:
	 [Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_reorient/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_get_mean_motion/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:13:05,852 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:13:05,876 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/sinker_0_motion_correct".
201112-22:13:05,888 nipype.workflow INFO:
	 [Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:13:06,130 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_motion_correct".
201112-22:13:06,139 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull".
201112-22:13:06,156 nipype.workflow INFO:
	 [Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-22:13:06,415 nipype.interface INFO:
	 stderr 2020-11-12T22:13:06.414840:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:13:06,422 nipype.interface INFO:
	 stderr 2020-11-12T22:13:06.422761:++ Authored by: KR Hammett & RW Cox
201112-22:13:07,56 nipype.interface INFO:
	 stderr 2020-11-12T22:13:07.056025:++ Output dataset ./sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-22:13:07,204 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:13:07,211 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass".
201112-22:13:07,218 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_mean_skull/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:13:09,23 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:13:09,39 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate".
201112-22:13:09,46 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:13:09,687 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:13:09,723 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_mask".
201112-22:13:09,730 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_dilate/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_mask/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:13:10,136 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:13:10,138 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/unifize".
201112-22:13:10,144 nipype.workflow INFO:
	 [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/unifize/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:13:10,392 nipype.interface INFO:
	 stderr 2020-11-12T22:13:10.392253:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:14:31,877 nipype.interface INFO:
	 stderr 2020-11-12T22:14:31.877860: + Pre-processing: IAV..UW[s5073]Im
201112-22:14:31,893 nipype.interface INFO:
	 stderr 2020-11-12T22:14:31.893893:++ Output dataset ./uni.nii.gz
201112-22:14:31,894 nipype.interface INFO:
	 stderr 2020-11-12T22:14:31.894174:++ ===== Elapsed = 81.5 sec
201112-22:14:32,64 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:14:32,66 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass".
201112-22:14:32,93 nipype.workflow INFO:
	 [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:14:32,343 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.343448:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:14:32,344 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.344123:++ Authored by: Emperor Zhark
201112-22:14:32,347 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.346961:++ Loading dataset /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni.nii.gz
201112-22:14:32,351 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.351923:++ Forming automask
201112-22:14:32,353 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.353650: + Fixed clip level = 349.329224
201112-22:14:32,358 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.358075: + Used gradual clip level = 309.997894 .. 433.634613
201112-22:14:32,358 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.358490: + Number voxels above clip level = 35771
201112-22:14:32,358 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.358681: + Clustering voxels ...
201112-22:14:32,359 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.359884: + Largest cluster has 35771 voxels
201112-22:14:32,361 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.361283: + Clustering voxels ...
201112-22:14:32,362 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.362464: + Largest cluster has 35594 voxels
201112-22:14:32,366 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.366033: + Filled   385 voxels in small holes; now have 35979 voxels
201112-22:14:32,369 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.369225: + Filled     4 voxels in large holes; now have 35983 voxels
201112-22:14:32,370 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.370516: + Clustering voxels ...
201112-22:14:32,371 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.371736: + Largest cluster has 35983 voxels
201112-22:14:32,371 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.371970: + Clustering non-brain voxels ...
201112-22:14:32,372 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.372114: + Clustering voxels ...
201112-22:14:32,374 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.374825: + Largest cluster has 103265 voxels
201112-22:14:32,375 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.375160: + Mask now has 35999 voxels
201112-22:14:32,375 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.375313:++ Dilating automask
201112-22:14:32,382 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.382913: + Clustering voxels ...
201112-22:14:32,385 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.385200: + Largest cluster has 97608 voxels
201112-22:14:32,385 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.385532:++ 41656 voxels in the mask [out of 139264: 29.91%]
201112-22:14:32,385 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.385703:++ first  11 x-planes are zero [from R]
201112-22:14:32,385 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.385863:++ last    9 x-planes are zero [from L]
201112-22:14:32,386 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.386008:++ first   0 y-planes are zero [from P]
201112-22:14:32,386 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.386156:++ last    7 y-planes are zero [from A]
201112-22:14:32,386 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.386289:++ first   0 z-planes are zero [from I]
201112-22:14:32,386 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.386428:++ last    3 z-planes are zero [from S]
201112-22:14:32,390 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.390716:++ Output dataset ./uni_mask.nii.gz
201112-22:14:32,391 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.391581:++ applying mask to original data
201112-22:14:32,391 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.391816:++ Writing masked data
201112-22:14:32,407 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.407312:++ Output dataset ./uni_masked.nii.gz
201112-22:14:32,407 nipype.interface INFO:
	 stderr 2020-11-12T22:14:32.407622:++ CPU time = 0.000000 sec
201112-22:14:32,552 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:14:32,554 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks".
201112-22:14:32,560 nipype.workflow INFO:
	 [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_first_pass/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:14:32,953 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:14:32,954 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-026_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-22:14:32,961 nipype.workflow INFO:
	 [Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-22:14:33,189 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-22:14:33,191 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-026_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-22:14:33,196 nipype.workflow INFO:
	 [Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-026_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:14:33,482 nipype.interface INFO:
	 stderr 2020-11-12T22:14:33.481934:++ no -frac option: defaulting to -union
201112-22:14:33,482 nipype.interface INFO:
	 stderr 2020-11-12T22:14:33.482529:++ processing 1 input dataset(s), NN=2...
201112-22:14:33,482 nipype.interface INFO:
	 stderr 2020-11-12T22:14:33.482814:++ padding all datasets by 0 (for dilations)
201112-22:14:33,498 nipype.interface INFO:
	 stderr 2020-11-12T22:14:33.498574:++ frac 0 over 1 volumes gives min count 0
201112-22:14:33,499 nipype.interface INFO:
	 stderr 2020-11-12T22:14:33.499438:++ voxel limits: 0 clipped, 41624 survived, 97640 were zero
201112-22:14:33,499 nipype.interface INFO:
	 stderr 2020-11-12T22:14:33.499438:++ writing result sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-22:14:33,505 nipype.interface INFO:
	 stderr 2020-11-12T22:14:33.505683:++ Output dataset ./sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-22:14:33,650 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-22:14:33,652 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/sinker_0_functional_brain_mask".
201112-22:14:33,659 nipype.workflow INFO:
	 [Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:33,891 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_functional_brain_mask".
201112-22:14:33,906 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/functional_brain_mask_derivative_0".
201112-22:14:33,913 nipype.workflow INFO:
	 [Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-22:14:34,126 nipype.workflow INFO:
	 [Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-22:14:34,142 nipype.workflow INFO:
	 [Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:14:34,640 nipype.workflow INFO:
	 [Node] Finished "functional_brain_mask_derivative".
201112-22:14:34,665 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.functional_brain_mask_derivative_0".
201112-22:14:34,672 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_extract_brain".
201112-22:14:34,681 nipype.workflow INFO:
	 [Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_motion_correct_mcflirt/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:14:34,924 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.924076:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:14:34,931 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.931294:++ Authored by: A cast of thousands
201112-22:14:38,72 nipype.interface INFO:
	 stderr 2020-11-12T22:14:38.072736:++ Output dataset ./sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:14:38,248 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:14:38,255 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize".
201112-22:14:38,261 nipype.workflow INFO:
	 [Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/func_extract_brain/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-22:14:40,570 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:14:40,586 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-026_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-22:14:40,600 nipype.workflow INFO:
	 [Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-026_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:14:41,514 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201112-22:14:41,516 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-026_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-22:14:41,523 nipype.workflow INFO:
	 [Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/nuisance_regressor_0_0/_scan_depletion_run-2/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:14:41,762 nipype.interface INFO:
	 stderr 2020-11-12T22:14:41.762564:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:14:41,762 nipype.interface INFO:
	 stderr 2020-11-12T22:14:41.762859:++ Authored by: KR Hammett & RW Cox
201112-22:14:42,331 nipype.interface INFO:
	 stderr 2020-11-12T22:14:42.331625:++ Output dataset ./sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:14:42,481 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.functional_mean".
201112-22:14:42,497 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-026_ses-2/qc_snr_0/_scan_depletion_run-2/std_dev".
201112-22:14:42,507 nipype.workflow INFO:
	 [Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-2/combine_masks/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/qc_snr_0/_scan_depletion_run-2/std_dev/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:14:42,761 nipype.interface INFO:
	 stderr 2020-11-12T22:14:42.761294:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:14:42,762 nipype.interface INFO:
	 stderr 2020-11-12T22:14:42.762385:++ Authored by: KR Hammett & RW Cox
201112-22:14:43,281 nipype.interface INFO:
	 stderr 2020-11-12T22:14:43.281531:++ Output dataset ./sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:14:43,424 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.qc_snr_0.std_dev".
201112-22:14:43,439 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/sinker_0_functional_preprocessed".
201112-22:14:43,449 nipype.workflow INFO:
	 [Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:43,680 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_functional_preprocessed".
201112-22:14:43,690 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mask_normalize".
201112-22:14:43,698 nipype.workflow INFO:
	 [Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_normalize/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mask_normalize/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:14:44,662 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:14:44,682 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/sinker_0_functional_preprocessed_mask".
201112-22:14:44,698 nipype.workflow INFO:
	 [Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:44,934 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_functional_preprocessed_mask".
201112-22:14:44,935 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mean".
201112-22:14:44,942 nipype.workflow INFO:
	 [Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/func_mean/sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:14:45,191 nipype.interface INFO:
	 stderr 2020-11-12T22:14:45.190833:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:14:45,191 nipype.interface INFO:
	 stderr 2020-11-12T22:14:45.191454:++ Authored by: KR Hammett & RW Cox
201112-22:14:45,738 nipype.interface INFO:
	 stderr 2020-11-12T22:14:45.738634:++ Output dataset ./sub-026_ses-2_task-depletion_run-2_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-22:14:45,915 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:14:45,923 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/sinker_0_mean_functional".
201112-22:14:45,931 nipype.workflow INFO:
	 [Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:46,161 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_mean_functional".
201112-22:14:46,163 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-2/norm_motion_params".
201112-22:14:46,169 nipype.workflow INFO:
	 [Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:14:46,404 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:14:46,405 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/sinker_0_slice_time_corrected".
201112-22:14:46,416 nipype.workflow INFO:
	 [Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:46,652 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_slice_time_corrected".
201112-22:14:46,667 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-2/sinker_0_raw_functional".
201112-22:14:46,678 nipype.workflow INFO:
	 [Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:47,34 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_raw_functional".
201112-22:14:47,48 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_depletion_run-2/check_func_scan".
201112-22:14:47,100 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan" - collecting precomputed outputs
201112-22:14:47,100 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan" found cached.
201112-22:14:47,110 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_depletion_run-1/select_scan_params".
201112-22:14:47,148 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_gather_0.select_scan_params" - collecting precomputed outputs
201112-22:14:47,155 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_gather_0.select_scan_params" found cached.
201112-22:14:47,163 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_depletion_run-1/s3_scan_params".
201112-22:14:47,216 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_gather_0.s3_scan_params" - collecting precomputed outputs
201112-22:14:47,216 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_gather_0.s3_scan_params" found cached.
201112-22:14:47,219 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/scan_params_0".
201112-22:14:47,267 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.scan_params_0" - collecting precomputed outputs
201112-22:14:47,267 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.scan_params_0" found cached.
201112-22:14:47,271 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_depletion_run-1/selectrest".
201112-22:14:47,336 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_gather_0.selectrest" - collecting precomputed outputs
201112-22:14:47,336 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_gather_0.selectrest" found cached.
201112-22:14:47,342 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_depletion_run-1/check_for_s3".
201112-22:14:47,365 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_gather_0.check_for_s3" - collecting precomputed outputs
201112-22:14:47,366 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_gather_0.check_for_s3" found cached.
201112-22:14:47,367 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-026_ses-2/edit_func_0/_scan_depletion_run-1/func_get_idx".
201112-22:14:47,399 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.edit_func_0.func_get_idx" - collecting precomputed outputs
201112-22:14:47,400 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.edit_func_0.func_get_idx" found cached.
201112-22:14:47,402 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-026_ses-2/edit_func_0/_scan_depletion_run-1/func_drop_trs".
201112-22:14:47,442 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.edit_func_0.func_drop_trs" - collecting precomputed outputs
201112-22:14:47,442 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.edit_func_0.func_drop_trs" found cached.
201112-22:14:47,444 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique".
201112-22:14:47,481 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" - collecting precomputed outputs
201112-22:14:47,482 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" found cached.
201112-22:14:47,484 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_reorient".
201112-22:14:47,527 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" - collecting precomputed outputs
201112-22:14:47,527 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" found cached.
201112-22:14:47,529 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_RPI".
201112-22:14:47,563 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" - collecting precomputed outputs
201112-22:14:47,563 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" found cached.
201112-22:14:47,565 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_generate_ref".
201112-22:14:47,629 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" - collecting precomputed outputs
201112-22:14:47,629 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" found cached.
201112-22:14:47,632 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_motion".
201112-22:14:47,660 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" - collecting precomputed outputs
201112-22:14:47,661 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" found cached.
201112-22:14:47,663 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_motion_correct_mcflirt".
201112-22:14:47,970 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" - collecting precomputed outputs
201112-22:14:47,976 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" found cached.
201112-22:14:47,994 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-026_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/calculate_FDJ".
201112-22:14:48,39 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" - collecting precomputed outputs
201112-22:14:48,39 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" found cached.
201112-22:14:48,41 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_frame_wise_displacement_jenkinson".
201112-22:14:48,93 nipype.workflow INFO:
	 [Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:48,330 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201112-22:14:48,346 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_max_displacement".
201112-22:14:48,400 nipype.workflow INFO:
	 [Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:48,647 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_max_displacement".
201112-22:14:48,662 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_coordinate_transformation".
201112-22:14:48,743 nipype.workflow INFO:
	 [Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:48,996 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_coordinate_transformation".
201112-22:14:49,13 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_mean_skull".
201112-22:14:49,64 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" - collecting precomputed outputs
201112-22:14:49,74 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" found cached.
201112-22:14:49,83 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass".
201112-22:14:49,155 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" - collecting precomputed outputs
201112-22:14:49,162 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" found cached.
201112-22:14:49,164 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_dilate".
201112-22:14:49,196 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" - collecting precomputed outputs
201112-22:14:49,196 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" found cached.
201112-22:14:49,200 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_mask".
201112-22:14:49,266 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" - collecting precomputed outputs
201112-22:14:49,267 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" found cached.
201112-22:14:49,269 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/unifize".
201112-22:14:49,300 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" - collecting precomputed outputs
201112-22:14:49,301 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" found cached.
201112-22:14:49,304 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass".
201112-22:14:49,369 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" - collecting precomputed outputs
201112-22:14:49,376 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" found cached.
201112-22:14:49,385 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/combine_masks".
201112-22:14:49,429 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" - collecting precomputed outputs
201112-22:14:49,429 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" found cached.
201112-22:14:49,432 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-026_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/cal_DVARS".
201112-22:14:49,505 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" - collecting precomputed outputs
201112-22:14:49,506 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" found cached.
201112-22:14:49,508 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_extract_brain".
201112-22:14:49,542 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" - collecting precomputed outputs
201112-22:14:49,543 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" found cached.
201112-22:14:49,546 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_normalize".
201112-22:14:49,591 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" - collecting precomputed outputs
201112-22:14:49,591 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" found cached.
201112-22:14:49,594 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mask_normalize".
201112-22:14:49,646 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" - collecting precomputed outputs
201112-22:14:49,647 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" found cached.
201112-22:14:49,666 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mean".
201112-22:14:49,733 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" - collecting precomputed outputs
201112-22:14:49,742 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" found cached.
201112-22:14:49,744 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/norm_motion_params".
201112-22:14:49,811 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" - collecting precomputed outputs
201112-22:14:49,811 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" found cached.
201112-22:14:49,814 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-026_ses-2/qc_motion_0/_scan_depletion_run-1/motion_plot".
201112-22:14:49,866 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.qc_motion_0.motion_plot" - collecting precomputed outputs
201112-22:14:49,866 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.qc_motion_0.motion_plot" found cached.
201112-22:14:49,868 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_qc___movement_trans_plot".
201112-22:14:49,920 nipype.workflow INFO:
	 [Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:50,139 nipype.interface INFO:
	 sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-026_ses-2/qc___movement_trans_plot/_scan_depletion_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-026_ses-2/qc/movement_trans_plot/_scan_depletion_run-1/motion_trans_plot.png
201112-22:14:50,170 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_qc___movement_trans_plot".
201112-22:14:50,178 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_qc___movement_rot_plot".
201112-22:14:50,228 nipype.workflow INFO:
	 [Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:50,442 nipype.interface INFO:
	 sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-026_ses-2/qc___movement_rot_plot/_scan_depletion_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-026_ses-2/qc/movement_rot_plot/_scan_depletion_run-1/motion_rot_plot.png
201112-22:14:50,467 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_qc___movement_rot_plot".
201112-22:14:50,469 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-026_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/calc_motion_parameters".
201112-22:14:50,499 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" - collecting precomputed outputs
201112-22:14:50,499 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" found cached.
201112-22:14:50,502 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_motion_params".
201112-22:14:50,546 nipype.workflow INFO:
	 [Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:50,785 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_motion_params".
201112-22:14:50,787 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-026_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/calculate_FD".
201112-22:14:50,833 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" - collecting precomputed outputs
201112-22:14:50,833 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" found cached.
201112-22:14:50,834 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_frame_wise_displacement_power".
201112-22:14:50,879 nipype.workflow INFO:
	 [Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:51,117 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_frame_wise_displacement_power".
201112-22:14:51,120 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-026_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/calc_power_parameters".
201112-22:14:51,153 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" - collecting precomputed outputs
201112-22:14:51,153 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" found cached.
201112-22:14:51,155 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_power_params".
201112-22:14:51,199 nipype.workflow INFO:
	 [Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:51,437 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_power_params".
201112-22:14:51,439 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_movement_parameters".
201112-22:14:51,488 nipype.workflow INFO:
	 [Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:51,727 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_movement_parameters".
201112-22:14:51,729 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/func_despiked_0".
201112-22:14:51,790 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_despiked_0" - collecting precomputed outputs
201112-22:14:51,791 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_despiked_0" found cached.
201112-22:14:51,792 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_slice_timing_correction_0/_scan_depletion_run-1/slice_timing".
201112-22:14:51,828 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_slice_timing_correction_0.slice_timing" - collecting precomputed outputs
201112-22:14:51,828 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_slice_timing_correction_0.slice_timing" found cached.
201112-22:14:51,832 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique".
201112-22:14:51,865 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" - collecting precomputed outputs
201112-22:14:51,865 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" found cached.
201112-22:14:51,868 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_reorient".
201112-22:14:51,904 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" - collecting precomputed outputs
201112-22:14:51,904 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" found cached.
201112-22:14:51,907 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_RPI".
201112-22:14:51,936 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" - collecting precomputed outputs
201112-22:14:51,936 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" found cached.
201112-22:14:51,939 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_generate_ref".
201112-22:14:51,974 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" - collecting precomputed outputs
201112-22:14:51,974 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" found cached.
201112-22:14:51,976 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_motion".
201112-22:14:52,7 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" - collecting precomputed outputs
201112-22:14:52,8 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" found cached.
201112-22:14:52,10 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_motion_correct_mcflirt".
201112-22:14:52,374 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" - collecting precomputed outputs
201112-22:14:52,374 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" found cached.
201112-22:14:52,384 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_motion_correct".
201112-22:14:52,424 nipype.workflow INFO:
	 [Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:52,661 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_motion_correct".
201112-22:14:52,663 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_mean_skull".
201112-22:14:52,705 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" - collecting precomputed outputs
201112-22:14:52,706 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" found cached.
201112-22:14:52,707 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass".
201112-22:14:52,741 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" - collecting precomputed outputs
201112-22:14:52,742 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" found cached.
201112-22:14:52,745 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_dilate".
201112-22:14:52,783 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" - collecting precomputed outputs
201112-22:14:52,783 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" found cached.
201112-22:14:52,785 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_mask".
201112-22:14:52,847 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" - collecting precomputed outputs
201112-22:14:52,847 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" found cached.
201112-22:14:52,850 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/unifize".
201112-22:14:52,869 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" - collecting precomputed outputs
201112-22:14:52,869 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" found cached.
201112-22:14:52,873 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass".
201112-22:14:52,892 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" - collecting precomputed outputs
201112-22:14:52,892 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" found cached.
201112-22:14:52,895 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/combine_masks".
201112-22:14:52,914 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" - collecting precomputed outputs
201112-22:14:52,915 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" found cached.
201112-22:14:52,918 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-026_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-22:14:52,939 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" - collecting precomputed outputs
201112-22:14:52,939 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" found cached.
201112-22:14:52,941 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-026_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-22:14:52,964 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" - collecting precomputed outputs
201112-22:14:52,964 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" found cached.
201112-22:14:52,967 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_functional_brain_mask".
201112-22:14:53,4 nipype.workflow INFO:
	 [Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:53,245 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_functional_brain_mask".
201112-22:14:53,247 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/functional_brain_mask_derivative_0".
201112-22:14:53,269 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.functional_brain_mask_derivative_0" - collecting precomputed outputs
201112-22:14:53,270 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.functional_brain_mask_derivative_0" found cached.
201112-22:14:53,272 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_extract_brain".
201112-22:14:53,294 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" - collecting precomputed outputs
201112-22:14:53,295 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" found cached.
201112-22:14:53,297 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_normalize".
201112-22:14:53,322 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" - collecting precomputed outputs
201112-22:14:53,323 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" found cached.
201112-22:14:53,324 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-026_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-22:14:53,361 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" - collecting precomputed outputs
201112-22:14:53,361 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" found cached.
201112-22:14:53,364 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-026_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-22:14:53,391 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.functional_mean" - collecting precomputed outputs
201112-22:14:53,391 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.functional_mean" found cached.
201112-22:14:53,393 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-026_ses-2/qc_snr_0/_scan_depletion_run-1/std_dev".
201112-22:14:53,431 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.qc_snr_0.std_dev" - collecting precomputed outputs
201112-22:14:53,431 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.qc_snr_0.std_dev" found cached.
201112-22:14:53,434 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_functional_preprocessed".
201112-22:14:53,488 nipype.workflow INFO:
	 [Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:53,731 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_functional_preprocessed".
201112-22:14:53,733 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mask_normalize".
201112-22:14:53,761 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" - collecting precomputed outputs
201112-22:14:53,762 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" found cached.
201112-22:14:53,764 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_functional_preprocessed_mask".
201112-22:14:53,823 nipype.workflow INFO:
	 [Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:54,64 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_functional_preprocessed_mask".
201112-22:14:54,66 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mean".
201112-22:14:54,91 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" - collecting precomputed outputs
201112-22:14:54,91 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" found cached.
201112-22:14:54,93 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_mean_functional".
201112-22:14:54,145 nipype.workflow INFO:
	 [Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:54,387 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_mean_functional".
201112-22:14:54,389 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/norm_motion_params".
201112-22:14:54,420 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" - collecting precomputed outputs
201112-22:14:54,421 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" found cached.
201112-22:14:54,423 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_slice_time_corrected".
201112-22:14:54,481 nipype.workflow INFO:
	 [Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:54,723 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_slice_time_corrected".
201112-22:14:54,725 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_raw_functional".
201112-22:14:54,786 nipype.workflow INFO:
	 [Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:55,397 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_raw_functional".
201112-22:14:55,399 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_depletion_run-1/check_func_scan".
201112-22:14:55,431 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan" - collecting precomputed outputs
201112-22:14:55,431 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan" found cached.
201112-22:14:55,440 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.roi_dataflow_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-026_ses-2/roi_dataflow_0/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3".
201112-22:14:55,473 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.roi_dataflow_0.check_for_s3" - collecting precomputed outputs
201112-22:14:55,473 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.roi_dataflow_0.check_for_s3" found cached.
201112-22:14:55,476 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.roi_dataflow_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-026_ses-2/roi_dataflow_0/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3".
201112-22:14:55,502 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.roi_dataflow_0.check_for_s3" - collecting precomputed outputs
201112-22:14:55,502 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.roi_dataflow_0.check_for_s3" found cached.
201112-22:14:55,504 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_tmpl" in "/outputs/tmp/resting_preproc_sub-026_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl".
201112-22:14:55,581 nipype.workflow INFO:
	 [Node] Running "lap_tmpl" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 T_template0_maths.nii.gz Laplacian /ants_template/oasis/T_template0.nii.gz 1.5 1
201112-22:15:05,83 nipype.workflow ERROR:
	 Node lap_tmpl failed to run on host node093.
201112-22:15:05,95 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221505-av2902-lap_tmpl-22267029-acb1-4a68-80e6-73a7a33f2b7c.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl/_0xdff2077e42c097e3a3c18048e6f4551b_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl/_0xdff2077e42c097e3a3c18048e6f4551b.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl/_0xdff2077e42c097e3a3c18048e6f4551b_unfinished.json'

201112-22:15:05,107 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_tmpl" in "/outputs/tmp/resting_preproc_sub-026_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/res_tmpl".
201112-22:15:05,136 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_tmpl" - collecting precomputed outputs
201112-22:15:05,136 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_tmpl" found cached.
201112-22:15:05,144 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.anat_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-026_ses-2/anat_gather_0/check_for_s3".
201112-22:15:05,173 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.anat_gather_0.check_for_s3" - collecting precomputed outputs
201112-22:15:05,173 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.anat_gather_0.check_for_s3" found cached.
201112-22:15:05,175 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.anat_preproc_niworkflows_ants_0.anat_deoblique" in "/outputs/tmp/resting_preproc_sub-026_ses-2/anat_preproc_niworkflows_ants_0/anat_deoblique".
201112-22:15:05,207 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.anat_preproc_niworkflows_ants_0.anat_deoblique" - collecting precomputed outputs
201112-22:15:05,208 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.anat_preproc_niworkflows_ants_0.anat_deoblique" found cached.
201112-22:15:05,210 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.anat_preproc_niworkflows_ants_0.anat_reorient" in "/outputs/tmp/resting_preproc_sub-026_ses-2/anat_preproc_niworkflows_ants_0/anat_reorient".
201112-22:15:05,277 nipype.workflow INFO:
	 [Node] Running "anat_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-026_ses-2_T1w_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-026_ses-2/anat_preproc_niworkflows_ants_0/anat_reorient/sub-026_ses-2_T1w.nii.gz
201112-22:15:11,175 nipype.workflow ERROR:
	 Node anat_reorient failed to run on host node093.
201112-22:15:11,185 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221511-av2902-anat_reorient-267a7e84-e9ed-4d3a-9146-411991de042b.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/anat_preproc_niworkflows_ants_0/anat_reorient/_0x3ed3e15cda43959818e8b31e2e7818f6_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-2/anat_preproc_niworkflows_ants_0/anat_reorient/_0x3ed3e15cda43959818e8b31e2e7818f6.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/anat_preproc_niworkflows_ants_0/anat_reorient/_0x3ed3e15cda43959818e8b31e2e7818f6_unfinished.json'

201112-22:15:11,201 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_motion_estimate_filter_info_plot" in "/outputs/tmp/resting_preproc_sub-026_ses-2/sinker_0_motion_estimate_filter_info_plot".
201112-22:15:11,262 nipype.workflow INFO:
	 [Node] Running "sinker_0_motion_estimate_filter_info_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:15:11,496 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_motion_estimate_filter_info_plot".
201112-22:15:11,503 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_motion_estimate_filter_info_design" in "/outputs/tmp/resting_preproc_sub-026_ses-2/sinker_0_motion_estimate_filter_info_design".
201112-22:15:11,559 nipype.workflow INFO:
	 [Node] Running "sinker_0_motion_estimate_filter_info_design" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:15:11,792 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_motion_estimate_filter_info_design".
201112-22:15:11,794 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.check_for_s3_lateral_ventricles_mask" in "/outputs/tmp/resting_preproc_sub-026_ses-2/check_for_s3_lateral_ventricles_mask".
201112-22:15:11,819 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.check_for_s3_lateral_ventricles_mask" - collecting precomputed outputs
201112-22:15:11,820 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.check_for_s3_lateral_ventricles_mask" found cached.
201112-22:15:11,821 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.resampled_template_brain_for_func_derivative" in "/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_brain_for_func_derivative".
201112-22:15:11,845 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.resampled_template_brain_for_func_derivative" - collecting precomputed outputs
201112-22:15:11,846 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.resampled_template_brain_for_func_derivative" found cached.
201112-22:15:11,848 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.resampled_template_brain_for_func_preproc" in "/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_brain_for_func_preproc".
201112-22:15:11,871 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.resampled_template_brain_for_func_preproc" - collecting precomputed outputs
201112-22:15:11,871 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.resampled_template_brain_for_func_preproc" found cached.
201112-22:15:11,873 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_template_edge_0" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_template_edge_0".
201112-22:15:11,909 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.func_template_edge_0" - collecting precomputed outputs
201112-22:15:11,910 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.func_template_edge_0" found cached.
201112-22:15:11,912 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.montage_mfi_0.resample_o" in "/outputs/tmp/resting_preproc_sub-026_ses-2/montage_mfi_0/resample_o".
201112-22:15:11,946 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.montage_mfi_0.resample_o" - collecting precomputed outputs
201112-22:15:11,946 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.montage_mfi_0.resample_o" found cached.
201112-22:15:11,948 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.resampled_template_skull_for_func_derivative" in "/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_skull_for_func_derivative".
201112-22:15:11,987 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.resampled_template_skull_for_func_derivative" - collecting precomputed outputs
201112-22:15:11,987 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.resampled_template_skull_for_func_derivative" found cached.
201112-22:15:11,990 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.resampled_template_skull_for_func_preproc" in "/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_skull_for_func_preproc".
201112-22:15:12,20 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.resampled_template_skull_for_func_preproc" - collecting precomputed outputs
201112-22:15:12,21 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.resampled_template_skull_for_func_preproc" found cached.
201112-22:15:12,23 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.check_for_s3_PRIORS_WHITE" in "/outputs/tmp/resting_preproc_sub-026_ses-2/check_for_s3_PRIORS_WHITE".
201112-22:15:12,46 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.check_for_s3_PRIORS_WHITE" - collecting precomputed outputs
201112-22:15:12,46 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.check_for_s3_PRIORS_WHITE" found cached.
201112-22:15:12,48 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.check_for_s3_PRIORS_GRAY" in "/outputs/tmp/resting_preproc_sub-026_ses-2/check_for_s3_PRIORS_GRAY".
201112-22:15:12,70 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.check_for_s3_PRIORS_GRAY" - collecting precomputed outputs
201112-22:15:12,70 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.check_for_s3_PRIORS_GRAY" found cached.
201112-22:15:12,72 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.check_for_s3_PRIORS_CSF" in "/outputs/tmp/resting_preproc_sub-026_ses-2/check_for_s3_PRIORS_CSF".
201112-22:15:12,94 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.check_for_s3_PRIORS_CSF" - collecting precomputed outputs
201112-22:15:12,94 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.check_for_s3_PRIORS_CSF" found cached.
201112-22:15:12,96 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.resampled_template_skull_for_anat" in "/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_skull_for_anat".
201112-22:15:12,231 nipype.workflow INFO:
	 [Node] Running "resampled_template_skull_for_anat" ("CPAC.utils.interfaces.function.Function")
201112-22:15:12,443 nipype.workflow INFO:
	 [Node] Setting-up "template_skull_for_anat" in "/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_skull_for_anat/template_skull_for_anat".
201112-22:15:12,450 nipype.workflow INFO:
	 [Node] Running "template_skull_for_anat" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix mni_icbm152_t1_tal_nlin_asym_09c_resample.nii.gz -rmode Cu -dxyz 1.000000 1.000000 1.000000 -inset /outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_skull_for_anat/template_skull_for_anat/mni_icbm152_t1_tal_nlin_asym_09c.nii
201112-22:15:12,711 nipype.interface INFO:
	 stderr 2020-11-12T22:15:12.711794:** AFNI converts NIFTI_datatype=4 (INT16) in file /outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_skull_for_anat/template_skull_for_anat/mni_icbm152_t1_tal_nlin_asym_09c.nii to FLOAT32
201112-22:15:12,712 nipype.interface INFO:
	 stderr 2020-11-12T22:15:12.712397:     Warnings of this type will be muted for this session.
201112-22:15:12,712 nipype.interface INFO:
	 stderr 2020-11-12T22:15:12.712397:     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201112-22:15:15,299 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-2.resampled_template_skull_for_anat" (/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_skull_for_anat)
201112-22:15:15,308 nipype.workflow ERROR:
	 Node resampled_template_skull_for_anat failed to run on host node093.
201112-22:15:15,312 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221515-av2902-resampled_template_skull_for_anat-974a62b7-3162-4891-9d98-60dbfb14390a.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_skull_for_anat/template_skull_for_anat/_0x99a6d542c1dc4b23a566fe198423d856_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_skull_for_anat/template_skull_for_anat/_0x99a6d542c1dc4b23a566fe198423d856.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 521, in run
    runtime = self._run_interface(runtime)
  File "/code/CPAC/utils/interfaces/function.py", line 152, in _run_interface
    out = function_handle(**args)
  File "/code/CPAC/utils/datasource.py", line 586, in resolve_resolution
    resampled_template = resample.run()
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_skull_for_anat/template_skull_for_anat/_0x99a6d542c1dc4b23a566fe198423d856_unfinished.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 475, in run
    os.remove(hashfile_unfinished)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_skull_for_anat/_0x66ccbe1150e4c53dbb06b60b12aa0fe8_unfinished.json'

201112-22:15:15,323 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.resampled_template_brain_for_anat" in "/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_brain_for_anat".
201112-22:15:15,451 nipype.workflow INFO:
	 [Node] Running "resampled_template_brain_for_anat" ("CPAC.utils.interfaces.function.Function")
201112-22:15:15,662 nipype.workflow INFO:
	 [Node] Setting-up "template_brain_for_anat" in "/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_brain_for_anat/template_brain_for_anat".
201112-22:15:15,668 nipype.workflow INFO:
	 [Node] Running "template_brain_for_anat" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix tpl-MNI152NLin2009cAsym_res-01_desc-brain_T1w_resample.nii.gz -rmode Cu -dxyz 1.000000 1.000000 1.000000 -inset /outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_brain_for_anat/template_brain_for_anat/tpl-MNI152NLin2009cAsym_res-01_desc-brain_T1w.nii.gz
201112-22:15:17,523 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-2.resampled_template_brain_for_anat" (/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_brain_for_anat)
201112-22:15:17,533 nipype.workflow ERROR:
	 Node resampled_template_brain_for_anat failed to run on host node093.
201112-22:15:17,538 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221517-av2902-resampled_template_brain_for_anat-bdf5bab7-72c0-4893-83a3-da17263a100b.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_brain_for_anat/template_brain_for_anat/_0xcf1d0e2343535ec937c915b26dee9c5a_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_brain_for_anat/template_brain_for_anat/_0xcf1d0e2343535ec937c915b26dee9c5a.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 521, in run
    runtime = self._run_interface(runtime)
  File "/code/CPAC/utils/interfaces/function.py", line 152, in _run_interface
    out = function_handle(**args)
  File "/code/CPAC/utils/datasource.py", line 586, in resolve_resolution
    resampled_template = resample.run()
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_brain_for_anat/template_brain_for_anat/_0xcf1d0e2343535ec937c915b26dee9c5a_unfinished.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 475, in run
    os.remove(hashfile_unfinished)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_brain_for_anat/_0xc06dea8a5398854f64b41a336e53b651_unfinished.json'

201112-22:15:17,555 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.check_for_s3_acpc_template_brain" in "/outputs/tmp/resting_preproc_sub-026_ses-2/check_for_s3_acpc_template_brain".
201112-22:15:17,579 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.check_for_s3_acpc_template_brain" - collecting precomputed outputs
201112-22:15:17,579 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.check_for_s3_acpc_template_brain" found cached.
201112-22:15:17,586 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.check_for_s3_acpc_template_skull" in "/outputs/tmp/resting_preproc_sub-026_ses-2/check_for_s3_acpc_template_skull".
201112-22:15:17,609 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-2.check_for_s3_acpc_template_skull" - collecting precomputed outputs
201112-22:15:17,609 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-2.check_for_s3_acpc_template_skull" found cached.
201112-22:15:17,611 nipype.workflow INFO:
	 ***********************************
201112-22:15:17,611 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.func_gather_0.select_scan_params.b4
201112-22:15:17,612 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-220556-av2902-select_scan_params.b4-a4b8846b-91d9-4b22-99c8-daa8b573813f.pklz
201112-22:15:17,613 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.func_gather_0.selectrest.b4
201112-22:15:17,613 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-220556-av2902-selectrest.b4-b7833ce1-4cd6-40bb-9586-01870e6f9ba8.pklz
201112-22:15:17,613 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan.b4
201112-22:15:17,613 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-220556-av2902-check_func_scan.b4-637714e9-3fe8-4d01-9b33-06db525822ca.pklz
201112-22:15:17,614 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.func_gather_0.select_scan_params.b3
201112-22:15:17,614 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-220557-av2902-select_scan_params.b3-a0a89daf-2aee-47cb-ab8f-f0a4889e8e93.pklz
201112-22:15:17,614 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.func_gather_0.selectrest.b3
201112-22:15:17,614 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-220557-av2902-selectrest.b3-b598b339-a138-411c-bfb9-86095f27a209.pklz
201112-22:15:17,615 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan.b3
201112-22:15:17,615 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-220557-av2902-check_func_scan.b3-045770fb-5513-489c-8485-63277f569b78.pklz
201112-22:15:17,615 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.func_gather_0.select_scan_params.b2
201112-22:15:17,615 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-220558-av2902-select_scan_params.b2-56b9681b-6399-4b4c-be3c-87e4421ff524.pklz
201112-22:15:17,615 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.func_gather_0.selectrest.b2
201112-22:15:17,616 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-220558-av2902-selectrest.b2-89ed0d45-af9e-48e8-a889-53266c1c7861.pklz
201112-22:15:17,616 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan.b2
201112-22:15:17,616 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-220558-av2902-check_func_scan.b2-cda0c324-1b35-4f7f-92f1-a0fb43c6eaf2.pklz
201112-22:15:17,616 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_tmpl
201112-22:15:17,616 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221505-av2902-lap_tmpl-22267029-acb1-4a68-80e6-73a7a33f2b7c.pklz
201112-22:15:17,617 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.anat_preproc_niworkflows_ants_0.anat_reorient
201112-22:15:17,617 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221511-av2902-anat_reorient-267a7e84-e9ed-4d3a-9146-411991de042b.pklz
201112-22:15:17,618 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.resampled_template_skull_for_anat
201112-22:15:17,618 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221515-av2902-resampled_template_skull_for_anat-974a62b7-3162-4891-9d98-60dbfb14390a.pklz
201112-22:15:17,618 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.resampled_template_brain_for_anat
201112-22:15:17,618 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221517-av2902-resampled_template_brain_for_anat-bdf5bab7-72c0-4893-83a3-da17263a100b.pklz
201112-22:15:17,619 nipype.workflow INFO:
	 ***********************************
201112-22:15:17,644 nipype.workflow INFO:
	 

Error of subject workflow resting_preproc_sub-026_ses-2

CPAC run error:

    Pipeline configuration: cpac_fmriprep-options
    Subject workflow: resting_preproc_sub-026_ses-2
    Elapsed run time (minutes): 9.571935665607452
    Timing information saved in /outputs/log/cpac_individual_timing_cpac_fmriprep-options.csv
    System time of start:      2020-11-12 22:05:49


201112-22:15:17,674 nipype.workflow INFO:
	 

    C-PAC version: 1.7.2

    Setting maximum number of cores per participant to 1
    Setting number of participants at once to 1
    Setting OMP_NUM_THREADS to 1
    Setting MKL_NUM_THREADS to 1
    Setting ANTS/ITK thread usage to 1
    Maximum potential number of cores that might be used during this run: 1


201112-22:15:19,952 nipype.workflow INFO:
	 

Pipeline building completed.


201112-22:15:19,960 nipype.workflow INFO:
	 

Strategy forks:
- cpac_fmriprep-options


201112-22:15:22,718 nipype.workflow INFO:
	 Workflow resting_preproc_sub-026_ses-3 settings: ['check', 'execution', 'logging', 'monitoring']
201112-22:15:24,91 nipype.workflow INFO:
	 Running serially.
201112-22:15:24,112 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-2/select_scan_params".
201112-22:15:24,145 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" - collecting precomputed outputs
201112-22:15:24,145 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" found cached.
201112-22:15:24,174 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-2/s3_scan_params".
201112-22:15:24,198 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-3.func_gather_0.s3_scan_params" - collecting precomputed outputs
201112-22:15:24,198 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-3.func_gather_0.s3_scan_params" found cached.
201112-22:15:24,200 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.scan_params_0" in "/outputs/tmp/resting_preproc_sub-026_ses-3/_scan_tgng_run-2/scan_params_0".
201112-22:15:24,224 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-3.scan_params_0" - collecting precomputed outputs
201112-22:15:24,230 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-3.scan_params_0" found cached.
201112-22:15:24,244 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-2/selectrest".
201112-22:15:24,293 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" - collecting precomputed outputs
201112-22:15:24,300 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" found cached.
201112-22:15:24,313 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-2/check_for_s3".
201112-22:15:24,338 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-3.func_gather_0.check_for_s3" - collecting precomputed outputs
201112-22:15:24,338 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-3.func_gather_0.check_for_s3" found cached.
201112-22:15:24,339 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-026_ses-3/edit_func_0/_scan_tgng_run-2/func_get_idx".
201112-22:15:24,415 nipype.workflow INFO:
	 [Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:15:24,678 nipype.workflow ERROR:
	 Node func_get_idx.b8 failed to run on host node093.
201112-22:15:24,689 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221524-av2902-func_get_idx.b8-edb2497f-6fc7-46db-8476-7a215dbf6ace.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/edit_func_0/_scan_tgng_run-2/func_get_idx/_0x316f4c0cf9871b16e2c391659fc9413a_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/edit_func_0/_scan_tgng_run-2/func_get_idx/_0x316f4c0cf9871b16e2c391659fc9413a.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/edit_func_0/_scan_tgng_run-2/func_get_idx/_0x316f4c0cf9871b16e2c391659fc9413a_unfinished.json'

201112-22:15:24,697 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-026_ses-3/_scan_tgng_run-2/sinker_0_raw_functional".
201112-22:15:24,771 nipype.workflow INFO:
	 [Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:15:25,232 nipype.workflow ERROR:
	 Node sinker_0_raw_functional.b8 failed to run on host node093.
201112-22:15:25,244 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221525-av2902-sinker_0_raw_functional.b8-dcc67a78-7222-47ad-96a1-8242b82933c9.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/_scan_tgng_run-2/sinker_0_raw_functional/_0xf95be67d8b3efdfdb260328cc28327bb_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/_scan_tgng_run-2/sinker_0_raw_functional/_0xf95be67d8b3efdfdb260328cc28327bb.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/_scan_tgng_run-2/sinker_0_raw_functional/_0xf95be67d8b3efdfdb260328cc28327bb_unfinished.json'

201112-22:15:25,251 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-2/check_func_scan".
201112-22:15:25,358 nipype.workflow INFO:
	 [Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:15:25,632 nipype.workflow ERROR:
	 Node check_func_scan.b8 failed to run on host node093.
201112-22:15:25,643 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221525-av2902-check_func_scan.b8-e80d5b77-4845-4d23-9753-6bfaf4e76e3d.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-2/check_func_scan/_0xac88c17f14a1f63cac2dafab4922d339_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-2/check_func_scan/_0xac88c17f14a1f63cac2dafab4922d339.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-2/check_func_scan/_0xac88c17f14a1f63cac2dafab4922d339_unfinished.json'

201112-22:15:25,662 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-1/select_scan_params".
201112-22:15:25,788 nipype.workflow INFO:
	 [Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:15:26,76 nipype.workflow ERROR:
	 Node select_scan_params.b7 failed to run on host node093.
201112-22:15:26,84 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221526-av2902-select_scan_params.b7-9caa04b0-5111-4da8-9d00-b27387e8ad59.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-1/select_scan_params/_0x223e4f068e4c53177fd9294de52da772_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-1/select_scan_params/_0x223e4f068e4c53177fd9294de52da772.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-1/select_scan_params/_0x223e4f068e4c53177fd9294de52da772_unfinished.json'

201112-22:15:26,99 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-1/selectrest".
201112-22:15:26,140 nipype.workflow INFO:
	 [Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:15:26,394 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.func_gather_0.selectrest".
201112-22:15:26,435 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-1/check_for_s3".
201112-22:15:26,444 nipype.workflow INFO:
	 [Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:15:26,736 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.func_gather_0.check_for_s3" (/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-1/check_for_s3)
201112-22:15:26,756 nipype.workflow ERROR:
	 Node check_for_s3.b7 failed to run on host node093.
201112-22:15:26,757 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221526-av2902-check_for_s3.b7-89cd083a-3d40-48ff-bbec-8308174d802a.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:26,761 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-1/check_func_scan".
201112-22:15:26,802 nipype.workflow INFO:
	 [Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:15:27,53 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" (/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-1/check_func_scan)
201112-22:15:27,80 nipype.workflow ERROR:
	 Node check_func_scan.b7 failed to run on host node093.
201112-22:15:27,85 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221527-av2902-check_func_scan.b7-9537c246-2f20-476d-8ca9-7ba142667aed.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:27,105 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-2/select_scan_params".
201112-22:15:27,148 nipype.workflow INFO:
	 [Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:15:27,400 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" (/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-2/select_scan_params)
201112-22:15:27,427 nipype.workflow ERROR:
	 Node select_scan_params.b6 failed to run on host node093.
201112-22:15:27,432 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221527-av2902-select_scan_params.b6-9e911b35-cdcd-45cb-bf58-4a765e32f161.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:27,453 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-2/selectrest".
201112-22:15:27,495 nipype.workflow INFO:
	 [Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:15:27,766 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" (/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-2/selectrest)
201112-22:15:27,785 nipype.workflow ERROR:
	 Node selectrest.b6 failed to run on host node093.
201112-22:15:27,789 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221527-av2902-selectrest.b6-ba51562a-5103-4f05-9438-8724f88e9ec7.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 266, in open
    return ds.open(path, mode, encoding=encoding, newline=newline)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 624, in open
    raise IOError("%s not found." % path)
OSError: .proc-2564_time-1605237327.4959042_freq-1.00 not found.

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 475, in run
    os.remove(hashfile_unfinished)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-2/selectrest/_0xa3bfe003831f1e098e6574ef999a8d9e_unfinished.json'

201112-22:15:27,815 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-2/check_func_scan".
201112-22:15:27,875 nipype.workflow INFO:
	 [Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:15:28,166 nipype.workflow ERROR:
	 Node check_func_scan.b6 failed to run on host node093.
201112-22:15:28,178 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221528-av2902-check_func_scan.b6-43fe4cfa-74e7-4415-a567-270a3eececcc.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-2/check_func_scan/_0x253b03c6b39ac60bf794b32ab0a84a4a_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-2/check_func_scan/_0x253b03c6b39ac60bf794b32ab0a84a4a.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-2/check_func_scan/_0x253b03c6b39ac60bf794b32ab0a84a4a_unfinished.json'

201112-22:15:28,194 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-1/select_scan_params".
201112-22:15:28,318 nipype.workflow ERROR:
	 Node select_scan_params.b5 failed to run on host node094.
201112-22:15:28,349 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221528-av2902-select_scan_params.b5-ea2ac5ac-61c4-4d34-8a0b-83248db84a48.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 449, in run
    emptydirs(outdir, noexist_ok=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 828, in emptydirs
    raise ex
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 818, in emptydirs
    shutil.rmtree(path)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 498, in rmtree
    onerror(os.rmdir, path, sys.exc_info())
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 496, in rmtree
    os.rmdir(path)
OSError: [Errno 39] Directory not empty: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-1/select_scan_params'

201112-22:15:28,366 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-1/selectrest".
201112-22:15:28,463 nipype.workflow ERROR:
	 Node selectrest.b5 failed to run on host node093.
201112-22:15:28,470 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221528-av2902-selectrest.b5-d346b001-545d-4fb8-aabc-521c980e8f2b.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 449, in run
    emptydirs(outdir, noexist_ok=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 828, in emptydirs
    raise ex
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 818, in emptydirs
    shutil.rmtree(path)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 498, in rmtree
    onerror(os.rmdir, path, sys.exc_info())
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 496, in rmtree
    os.rmdir(path)
OSError: [Errno 39] Directory not empty: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-1/selectrest'

201112-22:15:28,484 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-1/check_func_scan".
201112-22:15:28,522 nipype.workflow INFO:
	 [Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:15:28,792 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" (/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-1/check_func_scan)
201112-22:15:28,826 nipype.workflow ERROR:
	 Node check_func_scan.b5 failed to run on host node093.
201112-22:15:28,830 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221528-av2902-check_func_scan.b5-80b76d16-b43c-4684-8aa4-294fd683da4d.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 266, in open
    return ds.open(path, mode, encoding=encoding, newline=newline)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 624, in open
    raise IOError("%s not found." % path)
OSError: .proc-2564_time-1605237328.5229874_freq-1.00 not found.

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 475, in run
    os.remove(hashfile_unfinished)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-1/check_func_scan/_0x31206778a0687bdde2502b15d26ff64b_unfinished.json'

201112-22:15:28,851 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rest_run-1/select_scan_params".
201112-22:15:28,907 nipype.workflow INFO:
	 [Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:15:29,185 nipype.workflow ERROR:
	 Node select_scan_params.b4 failed to run on host node093.
201112-22:15:29,198 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221529-av2902-select_scan_params.b4-3140b40b-e151-4fce-ac92-5067e8877b8e.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rest_run-1/select_scan_params/_0xd8aa9aebc02e3368c464e62138b69878_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rest_run-1/select_scan_params/_0xd8aa9aebc02e3368c464e62138b69878.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rest_run-1/select_scan_params/_0xd8aa9aebc02e3368c464e62138b69878_unfinished.json'

201112-22:15:29,217 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rest_run-1/selectrest".
201112-22:15:29,300 nipype.workflow ERROR:
	 Node selectrest.b4 failed to run on host node094.
201112-22:15:29,307 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221529-av2902-selectrest.b4-f3a3525c-85bd-44a4-8ec2-00776e49b56c.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 449, in run
    emptydirs(outdir, noexist_ok=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 830, in emptydirs
    raise ex
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 818, in emptydirs
    shutil.rmtree(path)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 494, in rmtree
    _rmtree_safe_fd(fd, path, onerror)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 452, in _rmtree_safe_fd
    onerror(os.unlink, fullname, sys.exc_info())
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 450, in _rmtree_safe_fd
    os.unlink(entry.name, dir_fd=topfd)
FileNotFoundError: [Errno 2] No such file or directory: '.proc-23199_time-1605237329.020076_freq-1.00'

201112-22:15:29,337 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rest_run-1/check_func_scan".
201112-22:15:29,385 nipype.workflow INFO:
	 [Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:15:29,686 nipype.workflow ERROR:
	 Node check_func_scan.b4 failed to run on host node093.
201112-22:15:29,697 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221529-av2902-check_func_scan.b4-093fc426-2f93-4825-959c-29c42731462c.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rest_run-1/check_func_scan/_0x665b29eca5ec9eab3702e1d334cbc7ef_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rest_run-1/check_func_scan/_0x665b29eca5ec9eab3702e1d334cbc7ef.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rest_run-1/check_func_scan/_0x665b29eca5ec9eab3702e1d334cbc7ef_unfinished.json'

201112-22:15:29,720 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_conditioning_run-1/select_scan_params".
201112-22:15:29,760 nipype.workflow ERROR:
	 Node select_scan_params.b3 failed to run on host node093.
201112-22:15:29,761 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221529-av2902-select_scan_params.b3-6dfc51af-99f1-411d-9a8e-d71e9e8b70fb.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 449, in run
    emptydirs(outdir, noexist_ok=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 830, in emptydirs
    raise ex
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 818, in emptydirs
    shutil.rmtree(path)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 494, in rmtree
    _rmtree_safe_fd(fd, path, onerror)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 452, in _rmtree_safe_fd
    onerror(os.unlink, fullname, sys.exc_info())
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 450, in _rmtree_safe_fd
    os.unlink(entry.name, dir_fd=topfd)
FileNotFoundError: [Errno 2] No such file or directory: '.proc-23199_time-1605237329.5074594_freq-1.00'

201112-22:15:29,775 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_conditioning_run-1/selectrest".
201112-22:15:29,814 nipype.workflow INFO:
	 [Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:15:30,71 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.func_gather_0.selectrest".
201112-22:15:30,113 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_conditioning_run-1/check_for_s3".
201112-22:15:30,129 nipype.workflow INFO:
	 [Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:15:30,454 nipype.workflow ERROR:
	 Node check_for_s3.b3 failed to run on host node093.
201112-22:15:30,461 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221530-av2902-check_for_s3.b3-6b4c7668-0bf8-4599-bbf6-f557c63ab310.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_conditioning_run-1/check_for_s3/_0x0eb63bc56733e9f9d0e4b3aaf78742fa_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_conditioning_run-1/check_for_s3/_0x0eb63bc56733e9f9d0e4b3aaf78742fa.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_conditioning_run-1/check_for_s3/_0x0eb63bc56733e9f9d0e4b3aaf78742fa_unfinished.json'

201112-22:15:30,478 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_conditioning_run-1/check_func_scan".
201112-22:15:30,527 nipype.workflow INFO:
	 [Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:15:30,790 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" (/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_conditioning_run-1/check_func_scan)
201112-22:15:30,819 nipype.workflow ERROR:
	 Node check_func_scan.b3 failed to run on host node093.
201112-22:15:30,824 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221530-av2902-check_func_scan.b3-760e09f1-163f-445d-b9f2-ddf27a39fceb.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:30,844 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-3/select_scan_params".
201112-22:15:30,887 nipype.workflow INFO:
	 [Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:15:31,139 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" (/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-3/select_scan_params)
201112-22:15:31,165 nipype.workflow ERROR:
	 Node select_scan_params.b2 failed to run on host node093.
201112-22:15:31,169 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221531-av2902-select_scan_params.b2-4e960093-33b1-49fd-9522-d9fb9e26e636.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:31,193 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-3/selectrest".
201112-22:15:31,235 nipype.workflow INFO:
	 [Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:15:31,484 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" (/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-3/selectrest)
201112-22:15:31,517 nipype.workflow ERROR:
	 Node selectrest.b2 failed to run on host node093.
201112-22:15:31,522 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221531-av2902-selectrest.b2-d7b39c6b-7a78-4a80-864c-d1ad7fa8d8cd.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:31,546 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-3/check_func_scan".
201112-22:15:31,585 nipype.workflow INFO:
	 [Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:15:31,872 nipype.workflow ERROR:
	 Node check_func_scan.b2 failed to run on host node093.
201112-22:15:31,885 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221531-av2902-check_func_scan.b2-40fe4a59-5f18-40d2-ac01-c5cf36d95d9b.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-3/check_func_scan/_0x2aa6b4e6517d75e06c0b00a68cb518d3_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-3/check_func_scan/_0x2aa6b4e6517d75e06c0b00a68cb518d3.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-3/check_func_scan/_0x2aa6b4e6517d75e06c0b00a68cb518d3_unfinished.json'

201112-22:15:31,908 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-2/select_scan_params".
201112-22:15:31,948 nipype.workflow INFO:
	 [Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:15:32,210 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" (/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-2/select_scan_params)
201112-22:15:32,239 nipype.workflow ERROR:
	 Node select_scan_params.b1 failed to run on host node093.
201112-22:15:32,243 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221532-av2902-select_scan_params.b1-4e657ff7-a236-45a1-bb12-86c568604436.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:32,266 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-2/selectrest".
201112-22:15:32,306 nipype.workflow INFO:
	 [Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:15:32,559 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" (/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-2/selectrest)
201112-22:15:32,583 nipype.workflow ERROR:
	 Node selectrest.b1 failed to run on host node093.
201112-22:15:32,587 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221532-av2902-selectrest.b1-4bb19ae1-ddb5-4908-80ed-c561c8b4d20b.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:32,612 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-2/check_func_scan".
201112-22:15:32,653 nipype.workflow INFO:
	 [Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:15:32,905 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" (/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-2/check_func_scan)
201112-22:15:32,939 nipype.workflow ERROR:
	 Node check_func_scan.b1 failed to run on host node093.
201112-22:15:32,944 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221532-av2902-check_func_scan.b1-0b84fb07-d153-49e0-8943-62f830a7786d.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:32,964 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-1/select_scan_params".
201112-22:15:33,5 nipype.workflow INFO:
	 [Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:15:33,291 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" (/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-1/select_scan_params)
201112-22:15:33,309 nipype.workflow ERROR:
	 Node select_scan_params.b0 failed to run on host node093.
201112-22:15:33,321 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221533-av2902-select_scan_params.b0-82199afa-6e43-40f7-9066-d8da60d6952e.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 266, in open
    return ds.open(path, mode, encoding=encoding, newline=newline)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 624, in open
    raise IOError("%s not found." % path)
OSError: .proc-2564_time-1605237333.0065675_freq-1.00 not found.

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 475, in run
    os.remove(hashfile_unfinished)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-1/select_scan_params/_0xf820f7892837c364d9758db647e6beef_unfinished.json'

201112-22:15:33,344 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-1/selectrest".
201112-22:15:33,400 nipype.workflow INFO:
	 [Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:15:33,685 nipype.workflow ERROR:
	 Node selectrest.b0 failed to run on host node093.
201112-22:15:33,696 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221533-av2902-selectrest.b0-2d29da64-fd9b-4de0-a448-87b5d4f6cd43.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-1/selectrest/_0x967edd1be6a334a95ce70998b0c9f22d_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-1/selectrest/_0x967edd1be6a334a95ce70998b0c9f22d.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-1/selectrest/_0x967edd1be6a334a95ce70998b0c9f22d_unfinished.json'

201112-22:15:33,718 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-1/check_func_scan".
201112-22:15:33,813 nipype.workflow ERROR:
	 Node check_func_scan.b0 failed to run on host node094.
201112-22:15:33,822 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221533-av2902-check_func_scan.b0-d411de0f-b4c1-4cb0-aa01-7050b12b25c2.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 449, in run
    emptydirs(outdir, noexist_ok=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 828, in emptydirs
    raise ex
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 818, in emptydirs
    shutil.rmtree(path)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 498, in rmtree
    onerror(os.rmdir, path, sys.exc_info())
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 496, in rmtree
    os.rmdir(path)
OSError: [Errno 39] Directory not empty: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-1/check_func_scan'

201112-22:15:33,842 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.roi_dataflow_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-026_ses-3/roi_dataflow_0/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3".
201112-22:15:33,925 nipype.workflow INFO:
	 [Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:15:34,275 nipype.workflow ERROR:
	 Node check_for_s3.a1 failed to run on host node093.
201112-22:15:34,287 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221534-av2902-check_for_s3.a1-7d16c769-0143-4429-bf10-54f4bb395e3d.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/roi_dataflow_0/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3/_0x5397296bc56461a0cb8b06607915a885_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/roi_dataflow_0/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3/_0x5397296bc56461a0cb8b06607915a885.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/roi_dataflow_0/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3/_0x5397296bc56461a0cb8b06607915a885_unfinished.json'

201112-22:15:34,312 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.roi_dataflow_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-026_ses-3/roi_dataflow_0/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3".
201112-22:15:34,383 nipype.workflow INFO:
	 [Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:15:34,707 nipype.workflow ERROR:
	 Node check_for_s3.a0 failed to run on host node093.
201112-22:15:34,719 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221534-av2902-check_for_s3.a0-07a80d16-cbb6-4642-a686-566bde7c572f.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/roi_dataflow_0/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3/_0x7190c11fc03cc4218860b0caeba3daff_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/roi_dataflow_0/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3/_0x7190c11fc03cc4218860b0caeba3daff.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/roi_dataflow_0/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3/_0x7190c11fc03cc4218860b0caeba3daff_unfinished.json'

201112-22:15:34,725 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_tmpl" in "/outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl".
201112-22:15:34,804 nipype.workflow INFO:
	 [Node] Running "lap_tmpl" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 T_template0_maths.nii.gz Laplacian /ants_template/oasis/T_template0.nii.gz 1.5 1
201112-22:15:44,60 nipype.workflow ERROR:
	 Node lap_tmpl failed to run on host node093.
201112-22:15:44,69 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221544-av2902-lap_tmpl-d667fd47-bddf-4296-8776-65c7020565e5.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl/_0xdff2077e42c097e3a3c18048e6f4551b_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl/_0xdff2077e42c097e3a3c18048e6f4551b.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl/_0xdff2077e42c097e3a3c18048e6f4551b_unfinished.json'

201112-22:15:44,80 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_tmpl" in "/outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/res_tmpl".
201112-22:15:44,111 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-3.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_tmpl" - collecting precomputed outputs
201112-22:15:44,111 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-3.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_tmpl" found cached.
201112-22:15:44,124 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.anat_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-026_ses-3/anat_gather_0/check_for_s3".
201112-22:15:44,153 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-3.anat_gather_0.check_for_s3" - collecting precomputed outputs
201112-22:15:44,153 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-3.anat_gather_0.check_for_s3" found cached.
201112-22:15:44,156 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.anat_preproc_niworkflows_ants_0.anat_deoblique" in "/outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_deoblique".
201112-22:15:44,264 nipype.workflow INFO:
	 [Node] Running "anat_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-026_ses-3_T1w.nii.gz
201112-22:15:44,516 nipype.interface INFO:
	 stderr 2020-11-12T22:15:44.516755:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:15:44,517 nipype.interface INFO:
	 stderr 2020-11-12T22:15:44.517360:++ Authored by: RW Cox
201112-22:15:44,527 nipype.interface INFO:
	 stderr 2020-11-12T22:15:44.527368:** AFNI converts NIFTI_datatype=4 (INT16) in file /outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-026_ses-3_T1w.nii.gz to FLOAT32
201112-22:15:44,528 nipype.interface INFO:
	 stderr 2020-11-12T22:15:44.528385:     Warnings of this type will be muted for this session.
201112-22:15:44,528 nipype.interface INFO:
	 stderr 2020-11-12T22:15:44.528385:     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201112-22:15:44,529 nipype.interface INFO:
	 stderr 2020-11-12T22:15:44.529262:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-026_ses-3_T1w.nii.gz
201112-22:15:44,529 nipype.interface INFO:
	 stderr 2020-11-12T22:15:44.529970: + deoblique
201112-22:15:44,530 nipype.interface INFO:
	 stderr 2020-11-12T22:15:44.530182: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-026_ses-3_T1w.nii.gz (/outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-026_ses-3_T1w.nii.gz in NIFTI storage)
201112-22:15:46,608 nipype.interface INFO:
	 stderr 2020-11-12T22:15:46.608651:++ 3drefit processed 1 datasets
201112-22:15:46,849 nipype.workflow ERROR:
	 Node anat_deoblique failed to run on host node093.
201112-22:15:46,859 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221546-av2902-anat_deoblique-f18993d4-b4db-490c-998d-f8776f81efd3.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_deoblique/_0xc738607be17a219275f8b1fcd2a48de7_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_deoblique/_0xc738607be17a219275f8b1fcd2a48de7.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_deoblique/_0xc738607be17a219275f8b1fcd2a48de7_unfinished.json'

201112-22:15:46,887 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.sinker_0_motion_estimate_filter_info_plot" in "/outputs/tmp/resting_preproc_sub-026_ses-3/sinker_0_motion_estimate_filter_info_plot".
201112-22:15:46,950 nipype.workflow INFO:
	 [Node] Running "sinker_0_motion_estimate_filter_info_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:15:47,184 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.sinker_0_motion_estimate_filter_info_plot".
201112-22:15:47,198 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.sinker_0_motion_estimate_filter_info_design" in "/outputs/tmp/resting_preproc_sub-026_ses-3/sinker_0_motion_estimate_filter_info_design".
201112-22:15:47,280 nipype.workflow INFO:
	 [Node] Running "sinker_0_motion_estimate_filter_info_design" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:15:47,527 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.sinker_0_motion_estimate_filter_info_design".
201112-22:15:47,541 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.check_for_s3_lateral_ventricles_mask" in "/outputs/tmp/resting_preproc_sub-026_ses-3/check_for_s3_lateral_ventricles_mask".
201112-22:15:47,565 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-3.check_for_s3_lateral_ventricles_mask" - collecting precomputed outputs
201112-22:15:47,566 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-3.check_for_s3_lateral_ventricles_mask" found cached.
201112-22:15:47,568 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.resampled_template_brain_for_func_derivative" in "/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_brain_for_func_derivative".
201112-22:15:47,590 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-3.resampled_template_brain_for_func_derivative" - collecting precomputed outputs
201112-22:15:47,590 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-3.resampled_template_brain_for_func_derivative" found cached.
201112-22:15:47,592 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.resampled_template_brain_for_func_preproc" in "/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_brain_for_func_preproc".
201112-22:15:47,614 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-3.resampled_template_brain_for_func_preproc" - collecting precomputed outputs
201112-22:15:47,614 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-3.resampled_template_brain_for_func_preproc" found cached.
201112-22:15:47,617 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_template_edge_0" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_template_edge_0".
201112-22:15:47,645 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-3.func_template_edge_0" - collecting precomputed outputs
201112-22:15:47,645 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-3.func_template_edge_0" found cached.
201112-22:15:47,647 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.montage_mfi_0.resample_o" in "/outputs/tmp/resting_preproc_sub-026_ses-3/montage_mfi_0/resample_o".
201112-22:15:47,734 nipype.workflow INFO:
	 [Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201112-22:15:48,227 nipype.workflow ERROR:
	 Node resample_o failed to run on host node093.
201112-22:15:48,239 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221548-av2902-resample_o-142589a2-d388-4425-b6cd-ec04bf1dd8f1.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/montage_mfi_0/resample_o/_0x14762f3275afcdaad07e22d3be2713f4_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/montage_mfi_0/resample_o/_0x14762f3275afcdaad07e22d3be2713f4.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/montage_mfi_0/resample_o/_0x14762f3275afcdaad07e22d3be2713f4_unfinished.json'

201112-22:15:48,246 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.resampled_template_skull_for_func_derivative" in "/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_derivative".
201112-22:15:48,358 nipype.workflow INFO:
	 [Node] Running "resampled_template_skull_for_func_derivative" ("CPAC.utils.interfaces.function.Function")
201112-22:15:48,572 nipype.workflow INFO:
	 [Node] Setting-up "template_skull_for_func_derivative" in "/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative".
201112-22:15:48,586 nipype.workflow INFO:
	 [Node] Running "template_skull_for_func_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference.nii.gz
201112-22:15:49,337 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.resampled_template_skull_for_func_derivative" (/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_derivative)
201112-22:15:49,346 nipype.workflow ERROR:
	 Node resampled_template_skull_for_func_derivative failed to run on host node093.
201112-22:15:49,351 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221549-av2902-resampled_template_skull_for_func_derivative-6bb749be-1bab-43c0-8721-73841a384ecf.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/_0x515bd94bea7e6e1cc7ab705d0b32d7d0_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/_0x515bd94bea7e6e1cc7ab705d0b32d7d0.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 521, in run
    runtime = self._run_interface(runtime)
  File "/code/CPAC/utils/interfaces/function.py", line 152, in _run_interface
    out = function_handle(**args)
  File "/code/CPAC/utils/datasource.py", line 586, in resolve_resolution
    resampled_template = resample.run()
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/_0x515bd94bea7e6e1cc7ab705d0b32d7d0_unfinished.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 475, in run
    os.remove(hashfile_unfinished)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_derivative/_0xf500084e57406197c9475e73980615c0_unfinished.json'

201112-22:15:49,360 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.resampled_template_skull_for_func_preproc" in "/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_preproc".
201112-22:15:49,496 nipype.workflow INFO:
	 [Node] Running "resampled_template_skull_for_func_preproc" ("CPAC.utils.interfaces.function.Function")
201112-22:15:49,720 nipype.workflow INFO:
	 [Node] Setting-up "template_skull_for_func_preproc" in "/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc".
201112-22:15:49,743 nipype.workflow INFO:
	 [Node] Running "template_skull_for_func_preproc" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference.nii.gz
201112-22:15:50,472 nipype.workflow INFO:
	 [Node] Finished "template_skull_for_func_preproc".
201112-22:15:50,509 nipype.workflow ERROR:
	 Node resampled_template_skull_for_func_preproc failed to run on host node093.
201112-22:15:50,519 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221550-av2902-resampled_template_skull_for_func_preproc-f8ab027e-6155-4d08-b66f-aeea8a63f517.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_preproc/_0xf705cab77a4aca355794f4ca8fefe6a7_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_preproc/_0xf705cab77a4aca355794f4ca8fefe6a7.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_preproc/_0xf705cab77a4aca355794f4ca8fefe6a7_unfinished.json'

201112-22:15:50,529 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.check_for_s3_PRIORS_WHITE" in "/outputs/tmp/resting_preproc_sub-026_ses-3/check_for_s3_PRIORS_WHITE".
201112-22:15:50,557 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-3.check_for_s3_PRIORS_WHITE" - collecting precomputed outputs
201112-22:15:50,558 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-3.check_for_s3_PRIORS_WHITE" found cached.
201112-22:15:50,571 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.check_for_s3_PRIORS_GRAY" in "/outputs/tmp/resting_preproc_sub-026_ses-3/check_for_s3_PRIORS_GRAY".
201112-22:15:50,594 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-3.check_for_s3_PRIORS_GRAY" - collecting precomputed outputs
201112-22:15:50,594 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-3.check_for_s3_PRIORS_GRAY" found cached.
201112-22:15:50,597 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.check_for_s3_PRIORS_CSF" in "/outputs/tmp/resting_preproc_sub-026_ses-3/check_for_s3_PRIORS_CSF".
201112-22:15:50,620 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-3.check_for_s3_PRIORS_CSF" - collecting precomputed outputs
201112-22:15:50,621 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-3.check_for_s3_PRIORS_CSF" found cached.
201112-22:15:50,623 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.resampled_template_skull_for_anat" in "/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_anat".
201112-22:15:50,694 nipype.workflow INFO:
	 [Node] Running "resampled_template_skull_for_anat" ("CPAC.utils.interfaces.function.Function")
201112-22:15:50,918 nipype.workflow INFO:
	 [Node] Setting-up "template_skull_for_anat" in "/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_anat/template_skull_for_anat".
201112-22:15:50,942 nipype.workflow INFO:
	 [Node] Running "template_skull_for_anat" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix mni_icbm152_t1_tal_nlin_asym_09c_resample.nii.gz -rmode Cu -dxyz 1.000000 1.000000 1.000000 -inset /outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_anat/template_skull_for_anat/mni_icbm152_t1_tal_nlin_asym_09c.nii
201112-22:15:51,186 nipype.interface INFO:
	 stderr 2020-11-12T22:15:51.186929:** AFNI converts NIFTI_datatype=4 (INT16) in file /outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_anat/template_skull_for_anat/mni_icbm152_t1_tal_nlin_asym_09c.nii to FLOAT32
201112-22:15:51,194 nipype.interface INFO:
	 stderr 2020-11-12T22:15:51.194241:     Warnings of this type will be muted for this session.
201112-22:15:51,194 nipype.interface INFO:
	 stderr 2020-11-12T22:15:51.194241:     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201112-22:15:53,613 nipype.workflow INFO:
	 [Node] Finished "template_skull_for_anat".
201112-22:15:53,645 nipype.workflow ERROR:
	 Node resampled_template_skull_for_anat failed to run on host node093.
201112-22:15:53,647 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221553-av2902-resampled_template_skull_for_anat-9082064b-aaef-4479-b6ce-2de189a811e7.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_anat/_0x66ccbe1150e4c53dbb06b60b12aa0fe8_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_anat/_0x66ccbe1150e4c53dbb06b60b12aa0fe8.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_anat/_0x66ccbe1150e4c53dbb06b60b12aa0fe8_unfinished.json'

201112-22:15:53,653 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.resampled_template_brain_for_anat" in "/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_brain_for_anat".
201112-22:15:53,688 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-3.resampled_template_brain_for_anat" - collecting precomputed outputs
201112-22:15:53,689 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-3.resampled_template_brain_for_anat" found cached.
201112-22:15:53,712 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.anat_template_edge_0" in "/outputs/tmp/resting_preproc_sub-026_ses-3/anat_template_edge_0".
201112-22:15:53,773 nipype.workflow INFO:
	 [Node] Running "anat_template_edge_0" ("CPAC.utils.interfaces.function.Function")
201112-22:15:55,950 nipype.workflow ERROR:
	 Node anat_template_edge_0 failed to run on host node093.
201112-22:15:55,960 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221555-av2902-anat_template_edge_0-2d2933db-4629-444c-9b55-46982405d5c1.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/anat_template_edge_0/_0x15dc8cc213b02181954f9119d21dc660_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/anat_template_edge_0/_0x15dc8cc213b02181954f9119d21dc660.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/anat_template_edge_0/_0x15dc8cc213b02181954f9119d21dc660_unfinished.json'

201112-22:15:55,970 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.check_for_s3_acpc_template_brain" in "/outputs/tmp/resting_preproc_sub-026_ses-3/check_for_s3_acpc_template_brain".
201112-22:15:56,40 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-3.check_for_s3_acpc_template_brain" - collecting precomputed outputs
201112-22:15:56,40 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-3.check_for_s3_acpc_template_brain" found cached.
201112-22:15:56,55 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.check_for_s3_acpc_template_skull" in "/outputs/tmp/resting_preproc_sub-026_ses-3/check_for_s3_acpc_template_skull".
201112-22:15:56,79 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-3.check_for_s3_acpc_template_skull" - collecting precomputed outputs
201112-22:15:56,79 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-3.check_for_s3_acpc_template_skull" found cached.
201112-22:15:56,81 nipype.workflow INFO:
	 ***********************************
201112-22:15:56,81 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.edit_func_0.func_get_idx.b8
201112-22:15:56,81 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221524-av2902-func_get_idx.b8-edb2497f-6fc7-46db-8476-7a215dbf6ace.pklz
201112-22:15:56,82 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.sinker_0_raw_functional.b8
201112-22:15:56,82 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221525-av2902-sinker_0_raw_functional.b8-dcc67a78-7222-47ad-96a1-8242b82933c9.pklz
201112-22:15:56,82 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan.b8
201112-22:15:56,82 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221525-av2902-check_func_scan.b8-e80d5b77-4845-4d23-9753-6bfaf4e76e3d.pklz
201112-22:15:56,83 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params.b7
201112-22:15:56,83 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221526-av2902-select_scan_params.b7-9caa04b0-5111-4da8-9d00-b27387e8ad59.pklz
201112-22:15:56,83 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.check_for_s3.b7
201112-22:15:56,83 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221526-av2902-check_for_s3.b7-89cd083a-3d40-48ff-bbec-8308174d802a.pklz
201112-22:15:56,85 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan.b7
201112-22:15:56,85 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221527-av2902-check_func_scan.b7-9537c246-2f20-476d-8ca9-7ba142667aed.pklz
201112-22:15:56,85 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params.b6
201112-22:15:56,85 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221527-av2902-select_scan_params.b6-9e911b35-cdcd-45cb-bf58-4a765e32f161.pklz
201112-22:15:56,86 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.selectrest.b6
201112-22:15:56,86 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221527-av2902-selectrest.b6-ba51562a-5103-4f05-9438-8724f88e9ec7.pklz
201112-22:15:56,86 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan.b6
201112-22:15:56,87 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221528-av2902-check_func_scan.b6-43fe4cfa-74e7-4415-a567-270a3eececcc.pklz
201112-22:15:56,87 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params.b5
201112-22:15:56,87 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221528-av2902-select_scan_params.b5-ea2ac5ac-61c4-4d34-8a0b-83248db84a48.pklz
201112-22:15:56,87 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.selectrest.b5
201112-22:15:56,88 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221528-av2902-selectrest.b5-d346b001-545d-4fb8-aabc-521c980e8f2b.pklz
201112-22:15:56,88 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan.b5
201112-22:15:56,88 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221528-av2902-check_func_scan.b5-80b76d16-b43c-4684-8aa4-294fd683da4d.pklz
201112-22:15:56,88 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params.b4
201112-22:15:56,88 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221529-av2902-select_scan_params.b4-3140b40b-e151-4fce-ac92-5067e8877b8e.pklz
201112-22:15:56,89 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.selectrest.b4
201112-22:15:56,89 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221529-av2902-selectrest.b4-f3a3525c-85bd-44a4-8ec2-00776e49b56c.pklz
201112-22:15:56,89 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan.b4
201112-22:15:56,89 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221529-av2902-check_func_scan.b4-093fc426-2f93-4825-959c-29c42731462c.pklz
201112-22:15:56,89 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params.b3
201112-22:15:56,89 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221529-av2902-select_scan_params.b3-6dfc51af-99f1-411d-9a8e-d71e9e8b70fb.pklz
201112-22:15:56,90 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.check_for_s3.b3
201112-22:15:56,90 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221530-av2902-check_for_s3.b3-6b4c7668-0bf8-4599-bbf6-f557c63ab310.pklz
201112-22:15:56,90 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan.b3
201112-22:15:56,90 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221530-av2902-check_func_scan.b3-760e09f1-163f-445d-b9f2-ddf27a39fceb.pklz
201112-22:15:56,90 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params.b2
201112-22:15:56,90 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221531-av2902-select_scan_params.b2-4e960093-33b1-49fd-9522-d9fb9e26e636.pklz
201112-22:15:56,91 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.selectrest.b2
201112-22:15:56,92 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221531-av2902-selectrest.b2-d7b39c6b-7a78-4a80-864c-d1ad7fa8d8cd.pklz
201112-22:15:56,92 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan.b2
201112-22:15:56,92 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221531-av2902-check_func_scan.b2-40fe4a59-5f18-40d2-ac01-c5cf36d95d9b.pklz
201112-22:15:56,92 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params.b1
201112-22:15:56,92 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221532-av2902-select_scan_params.b1-4e657ff7-a236-45a1-bb12-86c568604436.pklz
201112-22:15:56,92 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.selectrest.b1
201112-22:15:56,93 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221532-av2902-selectrest.b1-4bb19ae1-ddb5-4908-80ed-c561c8b4d20b.pklz
201112-22:15:56,93 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan.b1
201112-22:15:56,93 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221532-av2902-check_func_scan.b1-0b84fb07-d153-49e0-8943-62f830a7786d.pklz
201112-22:15:56,93 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params.b0
201112-22:15:56,93 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221533-av2902-select_scan_params.b0-82199afa-6e43-40f7-9066-d8da60d6952e.pklz
201112-22:15:56,94 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.selectrest.b0
201112-22:15:56,94 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221533-av2902-selectrest.b0-2d29da64-fd9b-4de0-a448-87b5d4f6cd43.pklz
201112-22:15:56,94 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan.b0
201112-22:15:56,94 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221533-av2902-check_func_scan.b0-d411de0f-b4c1-4cb0-aa01-7050b12b25c2.pklz
201112-22:15:56,94 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.roi_dataflow_0.check_for_s3.a1
201112-22:15:56,94 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221534-av2902-check_for_s3.a1-7d16c769-0143-4429-bf10-54f4bb395e3d.pklz
201112-22:15:56,94 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.roi_dataflow_0.check_for_s3.a0
201112-22:15:56,95 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221534-av2902-check_for_s3.a0-07a80d16-cbb6-4642-a686-566bde7c572f.pklz
201112-22:15:56,95 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_tmpl
201112-22:15:56,95 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221544-av2902-lap_tmpl-d667fd47-bddf-4296-8776-65c7020565e5.pklz
201112-22:15:56,96 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.anat_preproc_niworkflows_ants_0.anat_deoblique
201112-22:15:56,96 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221546-av2902-anat_deoblique-f18993d4-b4db-490c-998d-f8776f81efd3.pklz
201112-22:15:56,97 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.montage_mfi_0.resample_o
201112-22:15:56,97 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221548-av2902-resample_o-142589a2-d388-4425-b6cd-ec04bf1dd8f1.pklz
201112-22:15:56,97 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.resampled_template_skull_for_func_derivative
201112-22:15:56,97 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221549-av2902-resampled_template_skull_for_func_derivative-6bb749be-1bab-43c0-8721-73841a384ecf.pklz
201112-22:15:56,97 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.resampled_template_skull_for_func_preproc
201112-22:15:56,98 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221550-av2902-resampled_template_skull_for_func_preproc-f8ab027e-6155-4d08-b66f-aeea8a63f517.pklz
201112-22:15:56,98 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.resampled_template_skull_for_anat
201112-22:15:56,99 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221553-av2902-resampled_template_skull_for_anat-9082064b-aaef-4479-b6ce-2de189a811e7.pklz
201112-22:15:56,99 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.anat_template_edge_0
201112-22:15:56,99 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221555-av2902-anat_template_edge_0-2d2933db-4629-444c-9b55-46982405d5c1.pklz
201112-22:15:56,99 nipype.workflow INFO:
	 ***********************************
201112-22:15:56,135 nipype.workflow INFO:
	 

Error of subject workflow resting_preproc_sub-026_ses-3

CPAC run error:

    Pipeline configuration: cpac_fmriprep-options
    Subject workflow: resting_preproc_sub-026_ses-3
    Elapsed run time (minutes): 0.6410370707511902
    Timing information saved in /outputs/log/cpac_individual_timing_cpac_fmriprep-options.csv
    System time of start:      2020-11-12 22:15:19


Traceback (most recent call last):
  File "/code/CPAC/pipeline/cpac_pipeline.py", line 417, in run_workflow
    workflow.run(plugin=plugin, plugin_args=plugin_args)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/workflows.py", line 595, in run
    runner.run(execgraph, updatehash=updatehash, config=self.config)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 61, in run
    report_nodes_not_run(notrun)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/tools.py", line 82, in report_nodes_not_run
    raise RuntimeError(('Workflow did not execute cleanly. '
RuntimeError: Workflow did not execute cleanly. Check log for details
Traceback (most recent call last):
  File "/code/CPAC/pipeline/cpac_pipeline.py", line 417, in run_workflow
    workflow.run(plugin=plugin, plugin_args=plugin_args)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/workflows.py", line 595, in run
    runner.run(execgraph, updatehash=updatehash, config=self.config)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 61, in run
    report_nodes_not_run(notrun)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/tools.py", line 82, in report_nodes_not_run
    raise RuntimeError(('Workflow did not execute cleanly. '
RuntimeError: Workflow did not execute cleanly. Check log for details