slurm-22509336.out • 📓 Jon's Lab Notebook

mkdir: cannot create directory ‘/rigel/psych/users/av2902/sb_cpac/preproc/’: File exists
[33mWARNING:[0m skipping mount of /rigel/psych/users/av2902/sb_cpac/scratch: no such file or directory

Running BIDS validator
#### Running C-PAC for sub-026
Number of participants to run in parallel: 1
Input directory: /bids_dataset
Output directory: /outputs/output
Working directory: /outputs/tmp
Crash directory: /outputs/crash
Log directory: /outputs/log
Remove working directory: False
Available memory: 100.0 (GB)
Available threads: 1
Number of threads for ANTs: 1
Parsing /bids_dataset..
Starting participant level processing
Run called with config file /outputs/cpac_pipeline_config_2020-11-12T22-05-30Z.yml
201112-22:05:43,313 nipype.workflow INFO:
	 

    C-PAC version: 1.7.2

    Setting maximum number of cores per participant to 1
    Setting number of participants at once to 1
    Setting OMP_NUM_THREADS to 1
    Setting MKL_NUM_THREADS to 1
    Setting ANTS/ITK thread usage to 1
    Maximum potential number of cores that might be used during this run: 1


201112-22:05:49,67 nipype.workflow INFO:
	 

Pipeline building completed.


201112-22:05:49,74 nipype.workflow INFO:
	 

Strategy forks:
- cpac_fmriprep-options


201112-22:05:55,58 nipype.workflow INFO:
	 Workflow resting_preproc_sub-026_ses-2 settings: ['check', 'execution', 'logging', 'monitoring']
201112-22:05:55,914 nipype.workflow INFO:
	 Running serially.
201112-22:05:55,933 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-2/select_scan_params".
201112-22:05:56,44 nipype.workflow INFO:
	 [Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:05:56,322 nipype.workflow ERROR:
	 Node select_scan_params.b4 failed to run on host node094.
201112-22:05:56,359 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-220556-av2902-select_scan_params.b4-eddd7b41-dca1-476d-b513-068ce63b1a04.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-2/select_scan_params/_0x170a35fdbc18b0389f91d1e5c382786f_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-2/select_scan_params/_0x170a35fdbc18b0389f91d1e5c382786f.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-2/select_scan_params/_0x170a35fdbc18b0389f91d1e5c382786f_unfinished.json'

201112-22:05:56,373 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-2/selectrest".
201112-22:05:56,454 nipype.workflow INFO:
	 [Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:05:56,717 nipype.workflow ERROR:
	 Node selectrest.b4 failed to run on host node094.
201112-22:05:56,727 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-220556-av2902-selectrest.b4-56363e91-6774-4f3f-9ede-47491f74ca47.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-2/selectrest/_0x684033f5c0674131b4b0f1d8b38c9a43_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-2/selectrest/_0x684033f5c0674131b4b0f1d8b38c9a43.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-2/selectrest/_0x684033f5c0674131b4b0f1d8b38c9a43_unfinished.json'

201112-22:05:56,742 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-2/check_func_scan".
201112-22:05:56,823 nipype.workflow INFO:
	 [Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:05:57,87 nipype.workflow ERROR:
	 Node check_func_scan.b4 failed to run on host node094.
201112-22:05:57,99 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-220557-av2902-check_func_scan.b4-06250430-a644-4cda-b5d6-ae9716a497e3.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-2/check_func_scan/_0x75c5d9fbe81a0ec0e92489405cb1f254_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-2/check_func_scan/_0x75c5d9fbe81a0ec0e92489405cb1f254.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-2/check_func_scan/_0x75c5d9fbe81a0ec0e92489405cb1f254_unfinished.json'

201112-22:05:57,109 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-1/select_scan_params".
201112-22:05:57,187 nipype.workflow ERROR:
	 Node select_scan_params.b3 failed to run on host node094.
201112-22:05:57,190 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-220557-av2902-select_scan_params.b3-e29dd92f-4f45-448f-aa67-e30367ff75e6.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 449, in run
    emptydirs(outdir, noexist_ok=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 830, in emptydirs
    raise ex
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 818, in emptydirs
    shutil.rmtree(path)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 494, in rmtree
    _rmtree_safe_fd(fd, path, onerror)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 452, in _rmtree_safe_fd
    onerror(os.unlink, fullname, sys.exc_info())
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 450, in _rmtree_safe_fd
    os.unlink(entry.name, dir_fd=topfd)
FileNotFoundError: [Errno 2] No such file or directory: '.proc-2564_time-1605236756.9123163_freq-1.00'

201112-22:05:57,196 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-1/selectrest".
201112-22:05:57,223 nipype.workflow INFO:
	 [Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:05:57,479 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-2.func_gather_0.selectrest" (/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-1/selectrest)
201112-22:05:57,501 nipype.workflow ERROR:
	 Node selectrest.b3 failed to run on host node094.
201112-22:05:57,512 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-220557-av2902-selectrest.b3-c0200ab9-c139-4946-b77a-0fc3d2bc31e4.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:05:57,524 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-1/check_func_scan".
201112-22:05:57,550 nipype.workflow INFO:
	 [Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:05:57,801 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan" (/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_tgng_run-1/check_func_scan)
201112-22:05:57,825 nipype.workflow ERROR:
	 Node check_func_scan.b3 failed to run on host node094.
201112-22:05:57,828 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-220557-av2902-check_func_scan.b3-3796764b-f33f-4bfd-97b7-e769776ed018.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:05:57,840 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_rest_run-1/select_scan_params".
201112-22:05:57,868 nipype.workflow INFO:
	 [Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:05:58,118 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-2.func_gather_0.select_scan_params" (/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_rest_run-1/select_scan_params)
201112-22:05:58,141 nipype.workflow ERROR:
	 Node select_scan_params.b2 failed to run on host node094.
201112-22:05:58,145 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-220558-av2902-select_scan_params.b2-bc8bc608-6276-4627-807f-d0cedea5a893.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:05:58,161 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_rest_run-1/selectrest".
201112-22:05:58,187 nipype.workflow INFO:
	 [Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:05:58,450 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-2.func_gather_0.selectrest" (/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_rest_run-1/selectrest)
201112-22:05:58,477 nipype.workflow ERROR:
	 Node selectrest.b2 failed to run on host node094.
201112-22:05:58,484 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-220558-av2902-selectrest.b2-2b2da5a9-1594-4dd7-b3a6-cde8a368d367.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 266, in open
    return ds.open(path, mode, encoding=encoding, newline=newline)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 624, in open
    raise IOError("%s not found." % path)
OSError: .proc-23199_time-1605236758.1880248_freq-1.00 not found.

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 475, in run
    os.remove(hashfile_unfinished)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_rest_run-1/selectrest/_0x06fd40f3b3b1dbdcbbdf133144cde944_unfinished.json'

201112-22:05:58,507 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_rest_run-1/check_func_scan".
201112-22:05:58,542 nipype.workflow INFO:
	 [Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:05:58,824 nipype.workflow ERROR:
	 Node check_func_scan.b2 failed to run on host node094.
201112-22:05:58,835 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-220558-av2902-check_func_scan.b2-c5685c6b-3d44-4fa6-8de1-18c48222d8dd.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_rest_run-1/check_func_scan/_0x6d7f3bcd6f1d2cd02f47c0ac68660dcb_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_rest_run-1/check_func_scan/_0x6d7f3bcd6f1d2cd02f47c0ac68660dcb.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_rest_run-1/check_func_scan/_0x6d7f3bcd6f1d2cd02f47c0ac68660dcb_unfinished.json'

201112-22:05:58,847 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_depletion_run-2/select_scan_params".
201112-22:05:58,911 nipype.workflow ERROR:
	 Node select_scan_params.b1 failed to run on host node093.
201112-22:05:58,918 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-220558-av2902-select_scan_params.b1-958ca922-e993-42c3-aced-57c4db76ebd5.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 449, in run
    emptydirs(outdir, noexist_ok=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 830, in emptydirs
    raise ex
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 818, in emptydirs
    shutil.rmtree(path)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 494, in rmtree
    _rmtree_safe_fd(fd, path, onerror)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 452, in _rmtree_safe_fd
    onerror(os.unlink, fullname, sys.exc_info())
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 450, in _rmtree_safe_fd
    os.unlink(entry.name, dir_fd=topfd)
FileNotFoundError: [Errno 2] No such file or directory: '_0x84c95fe8d3e6e27aab3575028c67a29b_unfinished.json'

201112-22:05:58,924 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_depletion_run-2/selectrest".
201112-22:05:58,960 nipype.workflow INFO:
	 [Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:05:59,204 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_gather_0.selectrest".
201112-22:05:59,230 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_depletion_run-2/check_for_s3".
201112-22:05:59,246 nipype.workflow INFO:
	 [Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:05:59,557 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-2.func_gather_0.check_for_s3" (/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_depletion_run-2/check_for_s3)
201112-22:05:59,568 nipype.workflow ERROR:
	 Node check_for_s3.b1 failed to run on host node094.
201112-22:05:59,571 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-220559-av2902-check_for_s3.b1-0402782f-c3bb-4161-b2c7-9b6857c8ff78.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 652, in _run_command
    dirs2keep=dirs2keep)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 1511, in clean_working_directory
    os.remove(f)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_depletion_run-2/check_for_s3/.proc-23199_time-1605236759.2470667_freq-1.00'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 475, in run
    os.remove(hashfile_unfinished)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_depletion_run-2/check_for_s3/_0xd635c7f011be09a2537baed33c3280cd_unfinished.json'

201112-22:05:59,584 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_depletion_run-2/check_func_scan".
201112-22:05:59,634 nipype.workflow INFO:
	 [Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:05:59,885 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan".
201112-22:05:59,909 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_depletion_run-1/select_scan_params".
201112-22:05:59,937 nipype.workflow INFO:
	 [Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:06:00,177 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_gather_0.select_scan_params".
201112-22:06:00,201 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_depletion_run-1/s3_scan_params".
201112-22:06:00,212 nipype.workflow INFO:
	 [Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:06:00,450 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_gather_0.s3_scan_params".
201112-22:06:00,461 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.scan_params_0" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/scan_params_0".
201112-22:06:00,474 nipype.workflow INFO:
	 [Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:06:00,712 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.scan_params_0".
201112-22:06:00,716 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_depletion_run-1/selectrest".
201112-22:06:00,738 nipype.workflow INFO:
	 [Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:06:00,975 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_gather_0.selectrest".
201112-22:06:00,982 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_depletion_run-1/check_for_s3".
201112-22:06:00,988 nipype.workflow INFO:
	 [Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:06:01,278 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_gather_0.check_for_s3".
201112-22:06:01,279 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-026_ses-2/edit_func_0/_scan_depletion_run-1/func_get_idx".
201112-22:06:01,294 nipype.workflow INFO:
	 [Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:06:01,532 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.edit_func_0.func_get_idx".
201112-22:06:01,535 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.edit_func_0.func_drop_trs" in "/outputs/tmp/resting_preproc_sub-026_ses-2/edit_func_0/_scan_depletion_run-1/func_drop_trs".
201112-22:06:01,543 nipype.workflow INFO:
	 [Node] Running "func_drop_trs" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /bids_dataset/sub-026/ses-2/func/sub-026_ses-2_task-depletion_run-1_bold.nii.gz[0..126] -expr "a" -prefix sub-026_ses-2_task-depletion_run-1_bold_calc.nii.gz
201112-22:06:01,799 nipype.interface INFO:
	 stderr 2020-11-12T22:06:01.799855:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:06:01,800 nipype.interface INFO:
	 stderr 2020-11-12T22:06:01.800301:++ Authored by: A cast of thousands
201112-22:06:07,439 nipype.interface INFO:
	 stderr 2020-11-12T22:06:07.438949:++ Output dataset ./sub-026_ses-2_task-depletion_run-1_bold_calc.nii.gz
201112-22:06:07,617 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.edit_func_0.func_drop_trs".
201112-22:06:07,622 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique".
201112-22:06:07,686 nipype.workflow INFO:
	 [Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-026_ses-2_task-depletion_run-1_bold_calc.nii.gz
201112-22:06:08,0 nipype.interface INFO:
	 stderr 2020-11-12T22:06:08.000825:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:06:08,1 nipype.interface INFO:
	 stderr 2020-11-12T22:06:08.001285:++ Authored by: RW Cox
201112-22:06:08,32 nipype.interface INFO:
	 stderr 2020-11-12T22:06:08.032150:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-026_ses-2_task-depletion_run-1_bold_calc.nii.gz
201112-22:06:08,33 nipype.interface INFO:
	 stderr 2020-11-12T22:06:08.033310: + deoblique
201112-22:06:08,33 nipype.interface INFO:
	 stderr 2020-11-12T22:06:08.033310: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-026_ses-2_task-depletion_run-1_bold_calc.nii.gz (/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-026_ses-2_task-depletion_run-1_bold_calc.nii.gz in NIFTI storage)
201112-22:06:11,850 nipype.interface INFO:
	 stderr 2020-11-12T22:06:11.850289:++ 3drefit processed 1 datasets
201112-22:06:12,37 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:06:12,42 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_reorient".
201112-22:06:12,50 nipype.workflow INFO:
	 [Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-026_ses-2_task-depletion_run-1_bold_calc_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_reorient/sub-026_ses-2_task-depletion_run-1_bold_calc.nii.gz
201112-22:06:16,427 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:06:16,441 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_RPI".
201112-22:06:16,449 nipype.workflow INFO:
	 [Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-026_ses-2_task-depletion_run-1_bold_calc_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_RPI/sub-026_ses-2_task-depletion_run-1_bold_calc_resample.nii.gz
201112-22:06:16,723 nipype.interface INFO:
	 stderr 2020-11-12T22:06:16.723155:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:06:16,727 nipype.interface INFO:
	 stderr 2020-11-12T22:06:16.727278:++ Authored by: KR Hammett & RW Cox
201112-22:06:17,205 nipype.interface INFO:
	 stderr 2020-11-12T22:06:17.205257:++ Output dataset ./sub-026_ses-2_task-depletion_run-1_bold_calc_resample_tstat.nii.gz
201112-22:06:17,350 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:06:17,351 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_generate_ref".
201112-22:06:17,359 nipype.workflow INFO:
	 [Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-026_ses-2_task-depletion_run-1_bold_calc_resample.1D -1Dmatrix_save sub-026_ses-2_task-depletion_run-1_bold_calc_resample.aff12.1D -prefix sub-026_ses-2_task-depletion_run-1_bold_calc_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_RPI/sub-026_ses-2_task-depletion_run-1_bold_calc_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-026_ses-2_task-depletion_run-1_bold_calc_resample_md.1D /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_generate_ref/sub-026_ses-2_task-depletion_run-1_bold_calc_resample.nii.gz
201112-22:06:17,621 nipype.interface INFO:
	 stderr 2020-11-12T22:06:17.621080:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:06:17,621 nipype.interface INFO:
	 stderr 2020-11-12T22:06:17.621401:++ Authored by: RW Cox
201112-22:06:17,642 nipype.interface INFO:
	 stderr 2020-11-12T22:06:17.642617:++ Coarse del was 10, replaced with 3
201112-22:08:11,887 nipype.interface INFO:
	 stderr 2020-11-12T22:08:11.887675:++ Max displacement in automask = 16.53 (mm) at sub-brick 115
201112-22:08:11,889 nipype.interface INFO:
	 stderr 2020-11-12T22:08:11.889284:++ Max delta displ  in automask = 11.09 (mm) at sub-brick 111
201112-22:08:15,445 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:08:15,455 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_motion".
201112-22:08:15,464 nipype.workflow INFO:
	 [Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-026_ses-2_task-depletion_run-1_bold_calc_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_motion/sub-026_ses-2_task-depletion_run-1_bold_calc_resample_volreg.nii.gz
201112-22:08:15,716 nipype.interface INFO:
	 stderr 2020-11-12T22:08:15.716296:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:08:15,716 nipype.interface INFO:
	 stderr 2020-11-12T22:08:15.716791:++ Authored by: KR Hammett & RW Cox
201112-22:08:16,182 nipype.interface INFO:
	 stderr 2020-11-12T22:08:16.182568:++ Output dataset ./sub-026_ses-2_task-depletion_run-1_bold_calc_resample_volreg_tstat.nii.gz
201112-22:08:16,327 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:08:16,336 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_motion_correct_mcflirt".
201112-22:08:16,345 nipype.workflow INFO:
	 [Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_reorient/sub-026_ses-2_task-depletion_run-1_bold_calc_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_motion_correct_mcflirt/sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_motion/sub-026_ses-2_task-depletion_run-1_bold_calc_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:08:38,803 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:08:38,823 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ" in "/outputs/tmp/resting_preproc_sub-026_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/calculate_FDJ".
201112-22:08:38,832 nipype.workflow INFO:
	 [Node] Running "calculate_FDJ" ("CPAC.utils.interfaces.function.Function")
201112-22:08:39,64 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FDJ".
201112-22:08:39,65 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_frame_wise_displacement_jenkinson" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_frame_wise_displacement_jenkinson".
201112-22:08:39,74 nipype.workflow INFO:
	 [Node] Running "sinker_0_frame_wise_displacement_jenkinson" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:08:39,306 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_frame_wise_displacement_jenkinson".
201112-22:08:39,308 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_max_displacement" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_max_displacement".
201112-22:08:39,317 nipype.workflow INFO:
	 [Node] Running "sinker_0_max_displacement" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:08:39,547 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_max_displacement".
201112-22:08:39,550 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_coordinate_transformation" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_coordinate_transformation".
201112-22:08:39,570 nipype.workflow INFO:
	 [Node] Running "sinker_0_coordinate_transformation" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:08:39,843 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_coordinate_transformation".
201112-22:08:39,855 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_mean_skull".
201112-22:08:39,863 nipype.workflow INFO:
	 [Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_mean_skull/sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf.nii.gz
201112-22:08:40,118 nipype.interface INFO:
	 stderr 2020-11-12T22:08:40.118125:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:08:40,118 nipype.interface INFO:
	 stderr 2020-11-12T22:08:40.118691:++ Authored by: KR Hammett & RW Cox
201112-22:08:40,612 nipype.interface INFO:
	 stderr 2020-11-12T22:08:40.611993:++ Output dataset ./sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat.nii.gz
201112-22:08:40,758 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:08:40,759 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass".
201112-22:08:40,766 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_mean_skull/sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:08:42,768 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:08:42,783 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_dilate".
201112-22:08:42,790 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_dilate/sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:08:43,506 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:08:43,522 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_mask".
201112-22:08:43,530 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_dilate/sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_mask/sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:08:43,938 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:08:43,952 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/unifize".
201112-22:08:43,960 nipype.workflow INFO:
	 [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/unifize/sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_masked.nii.gz
201112-22:08:44,264 nipype.interface INFO:
	 stderr 2020-11-12T22:08:44.264060:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:08,572 nipype.interface INFO:
	 stderr 2020-11-12T22:10:08.572570: + Pre-processing: IAV..UW[s5139]Im
201112-22:10:08,589 nipype.interface INFO:
	 stderr 2020-11-12T22:10:08.589528:++ Output dataset ./uni.nii.gz
201112-22:10:08,589 nipype.interface INFO:
	 stderr 2020-11-12T22:10:08.589912:++ ===== Elapsed = 84.3 sec
201112-22:10:08,758 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:10:08,785 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass".
201112-22:10:08,793 nipype.workflow INFO:
	 [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:10:09,71 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.070920:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:09,79 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.079850:++ Authored by: Emperor Zhark
201112-22:10:09,91 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.091113:++ Loading dataset /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:10:09,102 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.101988:++ Forming automask
201112-22:10:09,112 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.101988: + Fixed clip level = 357.782654
201112-22:10:09,123 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.123228: + Used gradual clip level = 325.332245 .. 426.628143
201112-22:10:09,133 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.123228: + Number voxels above clip level = 36337
201112-22:10:09,142 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.123228: + Clustering voxels ...
201112-22:10:09,169 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.123228: + Largest cluster has 36332 voxels
201112-22:10:09,171 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.123228: + Clustering voxels ...
201112-22:10:09,171 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.123228: + Largest cluster has 36118 voxels
201112-22:10:09,171 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.123228: + Filled   432 voxels in small holes; now have 36550 voxels
201112-22:10:09,172 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.123228: + Filled     3 voxels in large holes; now have 36553 voxels
201112-22:10:09,172 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.123228: + Clustering voxels ...
201112-22:10:09,172 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.123228: + Largest cluster has 36553 voxels
201112-22:10:09,172 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.123228: + Clustering non-brain voxels ...
201112-22:10:09,172 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.123228: + Clustering voxels ...
201112-22:10:09,173 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.123228: + Largest cluster has 102648 voxels
201112-22:10:09,173 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.123228: + Mask now has 36616 voxels
201112-22:10:09,173 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.123228:++ Dilating automask
201112-22:10:09,173 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.173423: + Clustering voxels ...
201112-22:10:09,173 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.173423: + Largest cluster has 96329 voxels
201112-22:10:09,173 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.173423:++ 42935 voxels in the mask [out of 139264: 30.83%]
201112-22:10:09,173 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.173423:++ first  11 x-planes are zero [from R]
201112-22:10:09,173 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.173423:++ last    9 x-planes are zero [from L]
201112-22:10:09,174 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.173423:++ first   0 y-planes are zero [from P]
201112-22:10:09,174 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.173423:++ last    6 y-planes are zero [from A]
201112-22:10:09,174 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.173423:++ first   0 z-planes are zero [from I]
201112-22:10:09,174 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.173423:++ last    1 z-planes are zero [from S]
201112-22:10:09,174 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.173423:++ Output dataset ./uni_mask.nii.gz
201112-22:10:09,174 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.173423:++ applying mask to original data
201112-22:10:09,174 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.173423:++ Writing masked data
201112-22:10:09,174 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.173423:++ Output dataset ./uni_masked.nii.gz
201112-22:10:09,174 nipype.interface INFO:
	 stderr 2020-11-12T22:10:09.173423:++ CPU time = 0.000000 sec
201112-22:10:09,320 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:10:09,335 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/combine_masks".
201112-22:10:09,351 nipype.workflow INFO:
	 [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/combine_masks/sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:10:09,749 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:10:09,763 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS" in "/outputs/tmp/resting_preproc_sub-026_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/cal_DVARS".
201112-22:10:09,782 nipype.workflow INFO:
	 [Node] Running "cal_DVARS" ("CPAC.utils.interfaces.function.Function")
201112-22:10:10,524 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.cal_DVARS".
201112-22:10:10,525 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_extract_brain".
201112-22:10:10,538 nipype.workflow INFO:
	 [Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_motion_correct_mcflirt/sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/combine_masks/sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:10:10,786 nipype.interface INFO:
	 stderr 2020-11-12T22:10:10.786778:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:10,794 nipype.interface INFO:
	 stderr 2020-11-12T22:10:10.794289:++ Authored by: A cast of thousands
201112-22:10:13,651 nipype.interface INFO:
	 stderr 2020-11-12T22:10:13.651286:++ Output dataset ./sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:10:13,834 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:10:13,850 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_normalize".
201112-22:10:13,857 nipype.workflow INFO:
	 [Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/func_preproc_before_stc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_extract_brain/sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_normalize/sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -odt float
201112-22:10:16,77 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:10:16,91 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mask_normalize".
201112-22:10:16,99 nipype.workflow INFO:
	 [Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_normalize/sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mask_normalize/sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:10:17,91 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:10:17,105 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mean".
201112-22:10:17,113 nipype.workflow INFO:
	 [Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mean/sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc.nii.gz
201112-22:10:17,364 nipype.interface INFO:
	 stderr 2020-11-12T22:10:17.364673:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:17,372 nipype.interface INFO:
	 stderr 2020-11-12T22:10:17.372086:++ Authored by: KR Hammett & RW Cox
201112-22:10:17,673 nipype.interface INFO:
	 stderr 2020-11-12T22:10:17.673661:++ Output dataset ./sub-026_ses-2_task-depletion_run-1_bold_calc_resample_mcf_calc_tstat.nii.gz
201112-22:10:17,851 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:10:17,865 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/norm_motion_params".
201112-22:10:17,873 nipype.workflow INFO:
	 [Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:10:18,109 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_before_stc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:10:18,124 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.qc_motion_0.motion_plot" in "/outputs/tmp/resting_preproc_sub-026_ses-2/qc_motion_0/_scan_depletion_run-1/motion_plot".
201112-22:10:18,137 nipype.workflow INFO:
	 [Node] Running "motion_plot" ("CPAC.utils.interfaces.function.Function")
201112-22:10:18,612 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.qc_motion_0.motion_plot".
201112-22:10:18,613 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_qc___movement_trans_plot" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_qc___movement_trans_plot".
201112-22:10:18,621 nipype.workflow INFO:
	 [Node] Running "sinker_0_qc___movement_trans_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:10:18,836 nipype.interface INFO:
	 sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-026_ses-2/qc___movement_trans_plot/_scan_depletion_run-1/motion_trans_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-026_ses-2/qc/movement_trans_plot/_scan_depletion_run-1/motion_trans_plot.png
201112-22:10:18,860 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_qc___movement_trans_plot".
201112-22:10:18,868 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_qc___movement_rot_plot" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_qc___movement_rot_plot".
201112-22:10:18,876 nipype.workflow INFO:
	 [Node] Running "sinker_0_qc___movement_rot_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:10:19,96 nipype.interface INFO:
	 sub: /outputs/output/pipeline_cpac_fmriprep-options/sub-026_ses-2/qc___movement_rot_plot/_scan_depletion_run-1/motion_rot_plot.png -> /outputs/output/pipeline_cpac_fmriprep-options/sub-026_ses-2/qc/movement_rot_plot/_scan_depletion_run-1/motion_rot_plot.png
201112-22:10:19,121 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_qc___movement_rot_plot".
201112-22:10:19,129 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters" in "/outputs/tmp/resting_preproc_sub-026_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/calc_motion_parameters".
201112-22:10:19,139 nipype.workflow INFO:
	 [Node] Running "calc_motion_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:10:19,379 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_motion_parameters".
201112-22:10:19,394 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_motion_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_motion_params".
201112-22:10:19,404 nipype.workflow INFO:
	 [Node] Running "sinker_0_motion_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:10:19,638 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_motion_params".
201112-22:10:19,653 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD" in "/outputs/tmp/resting_preproc_sub-026_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/calculate_FD".
201112-22:10:19,659 nipype.workflow INFO:
	 [Node] Running "calculate_FD" ("CPAC.utils.interfaces.function.Function")
201112-22:10:19,896 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calculate_FD".
201112-22:10:19,913 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_frame_wise_displacement_power" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_frame_wise_displacement_power".
201112-22:10:19,924 nipype.workflow INFO:
	 [Node] Running "sinker_0_frame_wise_displacement_power" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:10:20,158 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_frame_wise_displacement_power".
201112-22:10:20,173 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters" in "/outputs/tmp/resting_preproc_sub-026_ses-2/gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/calc_power_parameters".
201112-22:10:20,181 nipype.workflow INFO:
	 [Node] Running "calc_power_parameters" ("CPAC.utils.interfaces.function.Function")
201112-22:10:20,420 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.gen_motion_stats_before_stc_fsl_afni_mean_mcflirt_0.calc_power_parameters".
201112-22:10:20,435 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_power_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_power_params".
201112-22:10:20,444 nipype.workflow INFO:
	 [Node] Running "sinker_0_power_params" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:10:20,677 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_power_params".
201112-22:10:20,692 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_movement_parameters" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_movement_parameters".
201112-22:10:20,703 nipype.workflow INFO:
	 [Node] Running "sinker_0_movement_parameters" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:10:20,937 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_movement_parameters".
201112-22:10:20,954 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_despiked_0" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/func_despiked_0".
201112-22:10:20,962 nipype.workflow INFO:
	 [Node] Running "func_despiked_0" ("nipype.interfaces.afni.preprocess.Despike"), a CommandLine Interface with command:
3dDespike -prefix sub-026_ses-2_task-depletion_run-1_bold_calc_despike.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/func_despiked_0/sub-026_ses-2_task-depletion_run-1_bold_calc.nii.gz
201112-22:10:21,345 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.345491:++ 3dDespike: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:21,352 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.352706:++ Authored by: RW Cox
201112-22:10:21,357 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.357429:[7m*+ WARNING:[0m   If you are performing spatial transformations on an oblique dset, 
201112-22:10:21,357 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.357429:  such as /outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/func_despiked_0/sub-026_ses-2_task-depletion_run-1_bold_calc.nii.gz,
201112-22:10:21,358 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.357429:  or viewing/combining it with volumes of differing obliquity,
201112-22:10:21,358 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.357429:  you should consider running: 
201112-22:10:21,358 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.357429:     3dWarp -deoblique 
201112-22:10:21,358 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.357429:  on this and  other oblique datasets in the same session.
201112-22:10:21,358 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.357429: See 3dWarp -help for details.
201112-22:10:21,358 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.358850:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/func_despiked_0/sub-026_ses-2_task-depletion_run-1_bold_calc.nii.gz is 17.699196 degrees from plumb.
201112-22:10:21,358 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.358850:++ Input dataset is in short format, but output will be in float format
201112-22:10:21,359 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.358850:++ ignoring first 0 time points, using last 127
201112-22:10:21,359 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.358850:++ using 127 time points => -corder 4
201112-22:10:21,359 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.358850:++ Loading dataset /outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/func_despiked_0/sub-026_ses-2_task-depletion_run-1_bold_calc.nii.gz
201112-22:10:21,823 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.823218:++ 40050 voxels in the automask [out of 139264 in dataset]
201112-22:10:21,828 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.828921:++ 63920 voxels in the dilated automask [out of 139264 in dataset]
201112-22:10:21,839 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.839938:++ Procesing time series with OLD model fit algorithm
201112-22:10:21,868 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.868044:++ smash edit thresholds: 3.1 .. 5.0 MADs
201112-22:10:21,868 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.868044: +   [ 3.457% .. 0.072% of normal distribution]
201112-22:10:21,868 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.868044: +   [ 8.839% .. 3.125% of Laplace distribution]
201112-22:10:21,868 nipype.interface INFO:
	 stderr 2020-11-12T22:10:21.868044:++ start OpenMP thread #0
201112-22:10:29,19 nipype.interface INFO:
	 stderr 2020-11-12T22:10:29.019093:.............................
201112-22:10:29,26 nipype.interface INFO:
	 stderr 2020-11-12T22:10:29.026883:++ Elapsed despike time =  7s 178ms
201112-22:10:29,27 nipype.interface INFO:
	 stderr 2020-11-12T22:10:29.026883:
201112-22:10:29,27 nipype.interface INFO:
	 stderr 2020-11-12T22:10:29.026883:++ FINAL: 8117840 data points, 1568386 edits [19.320%], 885285 big edits [10.905%]
201112-22:10:33,30 nipype.interface INFO:
	 stderr 2020-11-12T22:10:33.030065:++ Output dataset ./sub-026_ses-2_task-depletion_run-1_bold_calc_despike.nii.gz
201112-22:10:33,228 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_despiked_0".
201112-22:10:33,236 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_slice_timing_correction_0.slice_timing" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_slice_timing_correction_0/_scan_depletion_run-1/slice_timing".
201112-22:10:33,255 nipype.interface WARNING:
	 Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:10:33,256 nipype.workflow INFO:
	 [Node] Running "slice_timing" ("nipype.interfaces.afni.preprocess.TShift"), a CommandLine Interface with command:
3dTshift -prefix sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift.nii.gz -tpattern @/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/scan_params_0/tpattern.txt -TR 2.0s /outputs/tmp/resting_preproc_sub-026_ses-2/func_slice_timing_correction_0/_scan_depletion_run-1/slice_timing/sub-026_ses-2_task-depletion_run-1_bold_calc_despike.nii.gz
201112-22:10:33,468 nipype.interface WARNING:
	 Passing a file prefixed by "@" will be deprecated; please use the `slice_timing` input
201112-22:10:33,544 nipype.interface INFO:
	 stderr 2020-11-12T22:10:33.544714:++ 3dTshift: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:33,561 nipype.interface INFO:
	 stderr 2020-11-12T22:10:33.561806:[7m*+ WARNING:[0m   If you are performing spatial transformations on an oblique dset, 
201112-22:10:33,561 nipype.interface INFO:
	 stderr 2020-11-12T22:10:33.561806:  such as /outputs/tmp/resting_preproc_sub-026_ses-2/func_slice_timing_correction_0/_scan_depletion_run-1/slice_timing/sub-026_ses-2_task-depletion_run-1_bold_calc_despike.nii.gz,
201112-22:10:33,562 nipype.interface INFO:
	 stderr 2020-11-12T22:10:33.561806:  or viewing/combining it with volumes of differing obliquity,
201112-22:10:33,562 nipype.interface INFO:
	 stderr 2020-11-12T22:10:33.561806:  you should consider running: 
201112-22:10:33,562 nipype.interface INFO:
	 stderr 2020-11-12T22:10:33.561806:     3dWarp -deoblique 
201112-22:10:33,562 nipype.interface INFO:
	 stderr 2020-11-12T22:10:33.561806:  on this and  other oblique datasets in the same session.
201112-22:10:33,562 nipype.interface INFO:
	 stderr 2020-11-12T22:10:33.561806: See 3dWarp -help for details.
201112-22:10:33,562 nipype.interface INFO:
	 stderr 2020-11-12T22:10:33.562590:++ Oblique dataset:/outputs/tmp/resting_preproc_sub-026_ses-2/func_slice_timing_correction_0/_scan_depletion_run-1/slice_timing/sub-026_ses-2_task-depletion_run-1_bold_calc_despike.nii.gz is 17.699196 degrees from plumb.
201112-22:10:37,962 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_slice_timing_correction_0.slice_timing".
201112-22:10:37,976 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique".
201112-22:10:38,58 nipype.workflow INFO:
	 [Node] Running "func_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift.nii.gz
201112-22:10:38,304 nipype.interface INFO:
	 stderr 2020-11-12T22:10:38.303971:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:38,304 nipype.interface INFO:
	 stderr 2020-11-12T22:10:38.304306:++ Authored by: RW Cox
201112-22:10:38,317 nipype.interface INFO:
	 stderr 2020-11-12T22:10:38.317626:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift.nii.gz
201112-22:10:38,318 nipype.interface INFO:
	 stderr 2020-11-12T22:10:38.318679: + deoblique
201112-22:10:38,319 nipype.interface INFO:
	 stderr 2020-11-12T22:10:38.318990: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift.nii.gz (/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_deoblique/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift.nii.gz in NIFTI storage)
201112-22:10:40,589 nipype.interface INFO:
	 stderr 2020-11-12T22:10:40.589004:++ 3drefit processed 1 datasets
201112-22:10:40,763 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_deoblique".
201112-22:10:40,771 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_reorient".
201112-22:10:40,780 nipype.workflow INFO:
	 [Node] Running "func_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_reorient/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift.nii.gz
201112-22:10:43,664 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_reorient".
201112-22:10:43,680 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_RPI".
201112-22:10:43,687 nipype.workflow INFO:
	 [Node] Running "func_get_mean_RPI" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_RPI/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-22:10:43,936 nipype.interface INFO:
	 stderr 2020-11-12T22:10:43.936059:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:43,936 nipype.interface INFO:
	 stderr 2020-11-12T22:10:43.936524:++ Authored by: KR Hammett & RW Cox
201112-22:10:44,545 nipype.interface INFO:
	 stderr 2020-11-12T22:10:44.545053:++ Output dataset ./sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz
201112-22:10:44,686 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_RPI".
201112-22:10:44,687 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_generate_ref".
201112-22:10:44,695 nipype.workflow INFO:
	 [Node] Running "func_generate_ref" ("nipype.interfaces.afni.preprocess.Volreg"), a CommandLine Interface with command:
3dvolreg -twopass -Fourier -1Dfile sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample.1D -1Dmatrix_save sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample.aff12.1D -prefix sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz -base /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_RPI/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_tstat.nii.gz -zpad 4 -maxdisp1D sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_md.1D /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_generate_ref/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample.nii.gz
201112-22:10:44,943 nipype.interface INFO:
	 stderr 2020-11-12T22:10:44.943721:++ 3dvolreg: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:10:44,944 nipype.interface INFO:
	 stderr 2020-11-12T22:10:44.944463:++ Authored by: RW Cox
201112-22:10:44,955 nipype.interface INFO:
	 stderr 2020-11-12T22:10:44.955849:++ Coarse del was 10, replaced with 3
201112-22:12:38,146 nipype.interface INFO:
	 stderr 2020-11-12T22:12:38.145988:++ Max displacement in automask = 13.20 (mm) at sub-brick 123
201112-22:12:38,155 nipype.interface INFO:
	 stderr 2020-11-12T22:12:38.155114:++ Max delta displ  in automask = 5.56 (mm) at sub-brick 111
201112-22:12:42,886 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_generate_ref".
201112-22:12:42,902 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_motion".
201112-22:12:42,911 nipype.workflow INFO:
	 [Node] Running "func_get_mean_motion" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_motion/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_volreg.nii.gz
201112-22:12:43,164 nipype.interface INFO:
	 stderr 2020-11-12T22:12:43.164318:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:12:43,165 nipype.interface INFO:
	 stderr 2020-11-12T22:12:43.165303:++ Authored by: KR Hammett & RW Cox
201112-22:12:43,947 nipype.interface INFO:
	 stderr 2020-11-12T22:12:43.947461:++ Output dataset ./sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz
201112-22:12:44,99 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_get_mean_motion".
201112-22:12:44,106 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_motion_correct_mcflirt".
201112-22:12:44,116 nipype.workflow INFO:
	 [Node] Running "func_motion_correct_mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_reorient/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample.nii.gz -out /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_motion_correct_mcflirt/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -reffile /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_get_mean_motion/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_volreg_tstat.nii.gz -mats -plots -rmsabs -rmsrel
201112-22:13:04,955 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_motion_correct_mcflirt".
201112-22:13:04,964 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_motion_correct" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_motion_correct".
201112-22:13:04,976 nipype.workflow INFO:
	 [Node] Running "sinker_0_motion_correct" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:13:05,206 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_motion_correct".
201112-22:13:05,207 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_mean_skull".
201112-22:13:05,217 nipype.workflow INFO:
	 [Node] Running "func_mean_skull" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_mean_skull/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz
201112-22:13:05,468 nipype.interface INFO:
	 stderr 2020-11-12T22:13:05.468286:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:13:05,468 nipype.interface INFO:
	 stderr 2020-11-12T22:13:05.468791:++ Authored by: KR Hammett & RW Cox
201112-22:13:06,109 nipype.interface INFO:
	 stderr 2020-11-12T22:13:06.109315:++ Output dataset ./sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz
201112-22:13:06,267 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_mean_skull".
201112-22:13:06,283 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass".
201112-22:13:06,291 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_mean_skull/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -f 0.20 -m
201112-22:13:08,106 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_pass".
201112-22:13:08,123 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_dilate".
201112-22:13:08,131 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
fslmaths -dt char /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_dilate/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz
201112-22:13:08,770 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_dilate".
201112-22:13:08,772 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_mask".
201112-22:13:08,779 nipype.workflow INFO:
	 [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain.nii.gz -mas /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_dilate/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_dil.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_mask/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:13:09,188 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_first_mask".
201112-22:13:09,205 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/unifize".
201112-22:13:09,213 nipype.workflow INFO:
	 [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/unifize/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_masked.nii.gz
201112-22:13:09,466 nipype.interface INFO:
	 stderr 2020-11-12T22:13:09.466597:++ 3dUnifize: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:14:33,659 nipype.interface INFO:
	 stderr 2020-11-12T22:14:33.659286: + Pre-processing: IAV..UW[s5169]Im
201112-22:14:33,675 nipype.interface INFO:
	 stderr 2020-11-12T22:14:33.675923:++ Output dataset ./uni.nii.gz
201112-22:14:33,677 nipype.interface INFO:
	 stderr 2020-11-12T22:14:33.677881:++ ===== Elapsed = 84.2 sec
201112-22:14:33,852 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.unifize".
201112-22:14:33,860 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass".
201112-22:14:33,869 nipype.workflow INFO:
	 [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
3dAutomask -apply_prefix uni_masked.nii.gz -dilate 1 -prefix uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:14:34,118 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.118292:++ 3dAutomask: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:14:34,125 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.125793:++ Authored by: Emperor Zhark
201112-22:14:34,125 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.125793:++ Loading dataset /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass/uni.nii.gz
201112-22:14:34,126 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.126914:++ Forming automask
201112-22:14:34,128 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.128642: + Fixed clip level = 357.881622
201112-22:14:34,133 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.133074: + Used gradual clip level = 325.428589 .. 427.095978
201112-22:14:34,142 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.142613: + Number voxels above clip level = 36362
201112-22:14:34,143 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.142613: + Clustering voxels ...
201112-22:14:34,143 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.142613: + Largest cluster has 36355 voxels
201112-22:14:34,143 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.142613: + Clustering voxels ...
201112-22:14:34,143 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.142613: + Largest cluster has 36135 voxels
201112-22:14:34,143 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.142613: + Filled   417 voxels in small holes; now have 36552 voxels
201112-22:14:34,143 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.143689: + Filled     1 voxels in large holes; now have 36553 voxels
201112-22:14:34,147 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.147571: + Clustering voxels ...
201112-22:14:34,159 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.147571: + Largest cluster has 36553 voxels
201112-22:14:34,159 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.147571: + Clustering non-brain voxels ...
201112-22:14:34,159 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.147571: + Clustering voxels ...
201112-22:14:34,159 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.159606: + Largest cluster has 102648 voxels
201112-22:14:34,159 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.159606: + Mask now has 36616 voxels
201112-22:14:34,159 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.159606:++ Dilating automask
201112-22:14:34,159 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.159606: + Clustering voxels ...
201112-22:14:34,160 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.160328: + Largest cluster has 96303 voxels
201112-22:14:34,160 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.160646:++ 42961 voxels in the mask [out of 139264: 30.85%]
201112-22:14:34,160 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.160809:++ first  11 x-planes are zero [from R]
201112-22:14:34,160 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.160964:++ last    9 x-planes are zero [from L]
201112-22:14:34,161 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.161100:++ first   0 y-planes are zero [from P]
201112-22:14:34,161 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.161242:++ last    6 y-planes are zero [from A]
201112-22:14:34,161 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.161370:++ first   0 z-planes are zero [from I]
201112-22:14:34,161 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.161508:++ last    1 z-planes are zero [from S]
201112-22:14:34,165 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.165423:++ Output dataset ./uni_mask.nii.gz
201112-22:14:34,165 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.165593:++ applying mask to original data
201112-22:14:34,166 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.166254:++ Writing masked data
201112-22:14:34,180 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.180825:++ Output dataset ./uni_masked.nii.gz
201112-22:14:34,181 nipype.interface INFO:
	 stderr 2020-11-12T22:14:34.181143:++ CPU time = 0.000000 sec
201112-22:14:34,323 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.skullstrip_second_pass".
201112-22:14:34,331 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/combine_masks".
201112-22:14:34,340 nipype.workflow INFO:
	 [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_first_pass/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask.nii.gz -mul /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/skullstrip_second_pass/uni_mask.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/combine_masks/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:14:34,731 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.combine_masks".
201112-22:14:34,745 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks" in "/outputs/tmp/resting_preproc_sub-026_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_merge_masks".
201112-22:14:34,760 nipype.workflow INFO:
	 [Node] Running "GlobalSignal_merge_masks" ("nipype.interfaces.utility.base.Merge")
201112-22:14:34,994 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.GlobalSignal_merge_masks".
201112-22:14:35,43 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks" in "/outputs/tmp/resting_preproc_sub-026_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks".
201112-22:14:35,53 nipype.workflow INFO:
	 [Node] Running "GlobalSignal_union_masks" ("CPAC.utils.interfaces.masktool.MaskTool"), a CommandLine Interface with command:
3dmask_tool -prefix sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -input /outputs/tmp/resting_preproc_sub-026_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:14:35,334 nipype.interface INFO:
	 stderr 2020-11-12T22:14:35.334725:++ no -frac option: defaulting to -union
201112-22:14:35,335 nipype.interface INFO:
	 stderr 2020-11-12T22:14:35.335308:++ processing 1 input dataset(s), NN=2...
201112-22:14:35,335 nipype.interface INFO:
	 stderr 2020-11-12T22:14:35.335836:++ padding all datasets by 0 (for dilations)
201112-22:14:35,351 nipype.interface INFO:
	 stderr 2020-11-12T22:14:35.351695:++ frac 0 over 1 volumes gives min count 0
201112-22:14:35,352 nipype.interface INFO:
	 stderr 2020-11-12T22:14:35.352122:++ voxel limits: 0 clipped, 42895 survived, 96369 were zero
201112-22:14:35,352 nipype.interface INFO:
	 stderr 2020-11-12T22:14:35.352307:++ writing result sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz...
201112-22:14:35,358 nipype.interface INFO:
	 stderr 2020-11-12T22:14:35.358650:++ Output dataset ./sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz
201112-22:14:35,507 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.GlobalSignal_union_masks".
201112-22:14:35,509 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_functional_brain_mask" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_functional_brain_mask".
201112-22:14:35,516 nipype.workflow INFO:
	 [Node] Running "sinker_0_functional_brain_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:35,755 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_functional_brain_mask".
201112-22:14:35,757 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.functional_brain_mask_derivative_0" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/functional_brain_mask_derivative_0".
201112-22:14:35,761 nipype.workflow INFO:
	 [Node] Running "functional_brain_mask_derivative_0" ("CPAC.utils.interfaces.function.Function")
201112-22:14:35,975 nipype.workflow INFO:
	 [Node] Setting-up "functional_brain_mask_derivative" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative".
201112-22:14:35,980 nipype.workflow INFO:
	 [Node] Running "functional_brain_mask_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/functional_brain_mask_derivative_0/functional_brain_mask_derivative/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz
201112-22:14:36,458 nipype.workflow INFO:
	 [Node] Finished "functional_brain_mask_derivative".
201112-22:14:36,475 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.functional_brain_mask_derivative_0".
201112-22:14:36,476 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_extract_brain".
201112-22:14:36,486 nipype.workflow INFO:
	 [Node] Running "func_extract_brain" ("nipype.interfaces.afni.utils.Calc"), a CommandLine Interface with command:
3dcalc -a /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_motion_correct_mcflirt/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf.nii.gz -b /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/combine_masks/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -expr "a*b" -prefix sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:14:36,726 nipype.interface INFO:
	 stderr 2020-11-12T22:14:36.726595:++ 3dcalc: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:14:36,726 nipype.interface INFO:
	 stderr 2020-11-12T22:14:36.726897:++ Authored by: A cast of thousands
201112-22:14:39,908 nipype.interface INFO:
	 stderr 2020-11-12T22:14:39.907860:++ Output dataset ./sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:14:40,85 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_preproc_fsl_afni_mean_mcflirt_0_skullstrip.func_extract_brain".
201112-22:14:40,92 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_normalize".
201112-22:14:40,100 nipype.workflow INFO:
	 [Node] Running "func_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/func_extract_brain/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz -ing 10000 /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_normalize/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -odt float
201112-22:14:42,443 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_normalize".
201112-22:14:42,458 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.GlobalSignal_mean" in "/outputs/tmp/resting_preproc_sub-026_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_mean".
201112-22:14:42,465 nipype.workflow INFO:
	 [Node] Running "GlobalSignal_mean" ("nipype.interfaces.afni.preprocess.ROIStats"), a CommandLine Interface with command:
3dROIstats -mask /outputs/tmp/resting_preproc_sub-026_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/GlobalSignal_union_masks/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths_mask.nii.gz -1Dformat /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_normalize/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:14:43,396 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.GlobalSignal_mean".
201112-22:14:43,411 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.functional_mean" in "/outputs/tmp/resting_preproc_sub-026_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean".
201112-22:14:43,419 nipype.workflow INFO:
	 [Node] Running "functional_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/nuisance_regressor_0_0/_scan_depletion_run-1/_selector_WM-2mm-M-SDB_CSF-2mm-M-SDB_G-M-SDB_M-SDB_P-2_BP-B0.01-T0.08/functional_mean/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:14:43,668 nipype.interface INFO:
	 stderr 2020-11-12T22:14:43.668230:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:14:43,676 nipype.interface INFO:
	 stderr 2020-11-12T22:14:43.676084:++ Authored by: KR Hammett & RW Cox
201112-22:14:44,239 nipype.interface INFO:
	 stderr 2020-11-12T22:14:44.239788:++ Output dataset ./sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:14:44,395 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.nuisance_regressor_0_0.functional_mean".
201112-22:14:44,402 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.qc_snr_0.std_dev" in "/outputs/tmp/resting_preproc_sub-026_ses-2/qc_snr_0/_scan_depletion_run-1/std_dev".
201112-22:14:44,421 nipype.workflow INFO:
	 [Node] Running "std_dev" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -stdev -mask /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/func_preproc_fsl_afni_mean_mcflirt_0_skullstrip/_scan_depletion_run-1/combine_masks/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_tstat_brain_mask_maths.nii.gz -prefix sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/qc_snr_0/_scan_depletion_run-1/std_dev/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz
201112-22:14:44,666 nipype.interface INFO:
	 stderr 2020-11-12T22:14:44.666338:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:14:44,668 nipype.interface INFO:
	 stderr 2020-11-12T22:14:44.668278:++ Authored by: KR Hammett & RW Cox
201112-22:14:45,192 nipype.interface INFO:
	 stderr 2020-11-12T22:14:45.191941:++ Output dataset ./sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_tstat.nii.gz
201112-22:14:45,369 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.qc_snr_0.std_dev".
201112-22:14:45,376 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_functional_preprocessed" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_functional_preprocessed".
201112-22:14:45,385 nipype.workflow INFO:
	 [Node] Running "sinker_0_functional_preprocessed" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:45,621 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_functional_preprocessed".
201112-22:14:45,623 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mask_normalize".
201112-22:14:45,629 nipype.workflow INFO:
	 [Node] Running "func_mask_normalize" ("nipype.interfaces.fsl.utils.ImageMaths"), a CommandLine Interface with command:
fslmaths /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_normalize/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths.nii.gz -Tmin -bin /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mask_normalize/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_maths_maths.nii.gz -odt char
201112-22:14:46,594 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mask_normalize".
201112-22:14:46,610 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_functional_preprocessed_mask" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_functional_preprocessed_mask".
201112-22:14:46,620 nipype.workflow INFO:
	 [Node] Running "sinker_0_functional_preprocessed_mask" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:46,858 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_functional_preprocessed_mask".
201112-22:14:46,874 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mean".
201112-22:14:46,882 nipype.workflow INFO:
	 [Node] Running "func_mean" ("nipype.interfaces.afni.utils.TStat"), a CommandLine Interface with command:
3dTstat -mean -prefix sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz /outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/func_mean/sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc.nii.gz
201112-22:14:47,139 nipype.interface INFO:
	 stderr 2020-11-12T22:14:47.139205:++ 3dTstat: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:14:47,147 nipype.interface INFO:
	 stderr 2020-11-12T22:14:47.147107:++ Authored by: KR Hammett & RW Cox
201112-22:14:47,700 nipype.interface INFO:
	 stderr 2020-11-12T22:14:47.700330:++ Output dataset ./sub-026_ses-2_task-depletion_run-1_bold_calc_despike_tshift_resample_mcf_calc_tstat.nii.gz
201112-22:14:47,855 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.func_mean".
201112-22:14:47,862 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_mean_functional" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_mean_functional".
201112-22:14:47,872 nipype.workflow INFO:
	 [Node] Running "sinker_0_mean_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:48,117 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_mean_functional".
201112-22:14:48,132 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_preproc_fsl_afni_mean_mcflirt_0/_scan_depletion_run-1/norm_motion_params".
201112-22:14:48,143 nipype.workflow INFO:
	 [Node] Running "norm_motion_params" ("CPAC.utils.interfaces.function.Function")
201112-22:14:48,383 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_preproc_fsl_afni_mean_mcflirt_0.norm_motion_params".
201112-22:14:48,397 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_slice_time_corrected" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_slice_time_corrected".
201112-22:14:48,415 nipype.workflow INFO:
	 [Node] Running "sinker_0_slice_time_corrected" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:48,657 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_slice_time_corrected".
201112-22:14:48,671 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-026_ses-2/_scan_depletion_run-1/sinker_0_raw_functional".
201112-22:14:48,691 nipype.workflow INFO:
	 [Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:14:49,52 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_raw_functional".
201112-22:14:49,66 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_gather_0/_scan_depletion_run-1/check_func_scan".
201112-22:14:49,99 nipype.workflow INFO:
	 [Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:14:49,338 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan".
201112-22:14:49,360 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.roi_dataflow_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-026_ses-2/roi_dataflow_0/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3".
201112-22:14:49,368 nipype.workflow INFO:
	 [Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:14:49,644 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.roi_dataflow_0.check_for_s3".
201112-22:14:49,660 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.roi_dataflow_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-026_ses-2/roi_dataflow_0/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3".
201112-22:14:49,673 nipype.workflow INFO:
	 [Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:14:50,8 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.roi_dataflow_0.check_for_s3".
201112-22:14:50,24 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_tmpl" in "/outputs/tmp/resting_preproc_sub-026_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl".
201112-22:14:50,33 nipype.workflow INFO:
	 [Node] Running "lap_tmpl" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 T_template0_maths.nii.gz Laplacian /ants_template/oasis/T_template0.nii.gz 1.5 1
201112-22:14:55,948 nipype.interface INFO:
	 stderr 2020-11-12T22:14:55.948248:** ERROR (nifti_image_write_hdr_img2): cannot open output file 'T_template0_maths.nii.gz'
201112-22:14:56,134 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_tmpl" (/outputs/tmp/resting_preproc_sub-026_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl)
201112-22:14:56,147 nipype.workflow ERROR:
	 Node lap_tmpl failed to run on host node094.
201112-22:14:56,149 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221456-av2902-lap_tmpl-76a1462f-3be0-4e5a-9588-180e2fd65129.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 523, in run
    outputs = self.aggregate_outputs(runtime)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 597, in aggregate_outputs
    predicted_outputs = self._list_outputs()
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 1167, in _list_outputs
    outputs[out_name] = os.path.abspath(fname)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:14:56,161 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_tmpl" in "/outputs/tmp/resting_preproc_sub-026_ses-2/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/res_tmpl".
201112-22:14:56,177 nipype.workflow INFO:
	 [Node] Running "res_tmpl" ("CPAC.utils.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command:
ResampleImageBySpacing 3 /ants_template/oasis/T_template0.nii.gz T_template0_resampled.nii.gz 4 4 4 1
201112-22:14:56,797 nipype.interface INFO:
	 stdout 2020-11-12T22:14:56.796992: spacing [1, 1, 1] dim 3
201112-22:14:56,797 nipype.interface INFO:
	 stdout 2020-11-12T22:14:56.797515: spacing2 [4, 4, 4]
201112-22:14:56,797 nipype.interface INFO:
	 stdout 2020-11-12T22:14:56.797712: smoothing by : 3 dir 0
201112-22:14:57,135 nipype.interface INFO:
	 stdout 2020-11-12T22:14:57.135707: smoothing by : 3 dir 1
201112-22:14:57,554 nipype.interface INFO:
	 stdout 2020-11-12T22:14:57.554499: smoothing by : 3 dir 2
201112-22:14:58,340 nipype.interface INFO:
	 stdout 2020-11-12T22:14:58.340355: out space [4, 4, 4]
201112-22:14:58,340 nipype.interface INFO:
	 stdout 2020-11-12T22:14:58.340717: output size [54, 64, 72] spc [4, 4, 4]
201112-22:14:58,578 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_tmpl".
201112-22:14:58,583 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.anat_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-026_ses-2/anat_gather_0/check_for_s3".
201112-22:14:58,592 nipype.workflow INFO:
	 [Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:14:58,940 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.anat_gather_0.check_for_s3".
201112-22:14:58,941 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.anat_preproc_niworkflows_ants_0.anat_deoblique" in "/outputs/tmp/resting_preproc_sub-026_ses-2/anat_preproc_niworkflows_ants_0/anat_deoblique".
201112-22:14:59,111 nipype.workflow INFO:
	 [Node] Running "anat_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-026_ses-2/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-026_ses-2_T1w.nii.gz
201112-22:14:59,360 nipype.interface INFO:
	 stderr 2020-11-12T22:14:59.360686:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:14:59,361 nipype.interface INFO:
	 stderr 2020-11-12T22:14:59.361076:++ Authored by: RW Cox
201112-22:14:59,371 nipype.interface INFO:
	 stderr 2020-11-12T22:14:59.371605:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-026_ses-2/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-026_ses-2_T1w.nii.gz
201112-22:14:59,372 nipype.interface INFO:
	 stderr 2020-11-12T22:14:59.372757: + deoblique
201112-22:14:59,373 nipype.interface INFO:
	 stderr 2020-11-12T22:14:59.373012: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-026_ses-2/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-026_ses-2_T1w.nii.gz (/outputs/tmp/resting_preproc_sub-026_ses-2/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-026_ses-2_T1w.nii.gz in NIFTI storage)
201112-22:15:04,758 nipype.interface INFO:
	 stderr 2020-11-12T22:15:04.758133:++ 3drefit processed 1 datasets
201112-22:15:04,928 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.anat_preproc_niworkflows_ants_0.anat_deoblique".
201112-22:15:04,930 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.anat_preproc_niworkflows_ants_0.anat_reorient" in "/outputs/tmp/resting_preproc_sub-026_ses-2/anat_preproc_niworkflows_ants_0/anat_reorient".
201112-22:15:04,937 nipype.workflow INFO:
	 [Node] Running "anat_reorient" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -orient RPI -prefix sub-026_ses-2_T1w_resample.nii.gz -inset /outputs/tmp/resting_preproc_sub-026_ses-2/anat_preproc_niworkflows_ants_0/anat_reorient/sub-026_ses-2_T1w.nii.gz
201112-22:15:05,587 nipype.interface INFO:
	 stderr 2020-11-12T22:15:05.587386:** ERROR (nifti_image_write_hdr_img2): cannot open output file './sub-026_ses-2_T1w_resample.nii.gz'
201112-22:15:05,752 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-2.anat_preproc_niworkflows_ants_0.anat_reorient" (/outputs/tmp/resting_preproc_sub-026_ses-2/anat_preproc_niworkflows_ants_0/anat_reorient)
201112-22:15:05,764 nipype.workflow ERROR:
	 Node anat_reorient failed to run on host node094.
201112-22:15:05,768 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221505-av2902-anat_reorient-5f6e2292-618c-403b-b923-75955e6d9725.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 523, in run
    outputs = self.aggregate_outputs(runtime)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 597, in aggregate_outputs
    predicted_outputs = self._list_outputs()
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/afni/base.py", line 218, in _list_outputs
    outputs = super(AFNICommand, self)._list_outputs()
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 1167, in _list_outputs
    outputs[out_name] = os.path.abspath(fname)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:05,787 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_motion_estimate_filter_info_plot" in "/outputs/tmp/resting_preproc_sub-026_ses-2/sinker_0_motion_estimate_filter_info_plot".
201112-22:15:05,796 nipype.workflow INFO:
	 [Node] Running "sinker_0_motion_estimate_filter_info_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:15:06,26 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_motion_estimate_filter_info_plot".
201112-22:15:06,34 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.sinker_0_motion_estimate_filter_info_design" in "/outputs/tmp/resting_preproc_sub-026_ses-2/sinker_0_motion_estimate_filter_info_design".
201112-22:15:06,41 nipype.workflow INFO:
	 [Node] Running "sinker_0_motion_estimate_filter_info_design" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:15:06,274 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.sinker_0_motion_estimate_filter_info_design".
201112-22:15:06,276 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.check_for_s3_lateral_ventricles_mask" in "/outputs/tmp/resting_preproc_sub-026_ses-2/check_for_s3_lateral_ventricles_mask".
201112-22:15:06,280 nipype.workflow INFO:
	 [Node] Running "check_for_s3_lateral_ventricles_mask" ("CPAC.utils.interfaces.function.Function")
201112-22:15:06,513 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.check_for_s3_lateral_ventricles_mask".
201112-22:15:06,514 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.resampled_template_brain_for_func_derivative" in "/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_brain_for_func_derivative".
201112-22:15:06,519 nipype.workflow INFO:
	 [Node] Running "resampled_template_brain_for_func_derivative" ("CPAC.utils.interfaces.function.Function")
201112-22:15:06,750 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.resampled_template_brain_for_func_derivative".
201112-22:15:06,751 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.resampled_template_brain_for_func_preproc" in "/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_brain_for_func_preproc".
201112-22:15:06,757 nipype.workflow INFO:
	 [Node] Running "resampled_template_brain_for_func_preproc" ("CPAC.utils.interfaces.function.Function")
201112-22:15:06,989 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.resampled_template_brain_for_func_preproc".
201112-22:15:06,991 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.func_template_edge_0" in "/outputs/tmp/resting_preproc_sub-026_ses-2/func_template_edge_0".
201112-22:15:06,996 nipype.workflow INFO:
	 [Node] Running "func_template_edge_0" ("CPAC.utils.interfaces.function.Function")
201112-22:15:07,529 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.func_template_edge_0".
201112-22:15:07,530 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.montage_mfi_0.resample_o" in "/outputs/tmp/resting_preproc_sub-026_ses-2/montage_mfi_0/resample_o".
201112-22:15:07,536 nipype.workflow INFO:
	 [Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201112-22:15:07,970 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.montage_mfi_0.resample_o".
201112-22:15:07,972 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.resampled_template_skull_for_func_derivative" in "/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_skull_for_func_derivative".
201112-22:15:07,977 nipype.workflow INFO:
	 [Node] Running "resampled_template_skull_for_func_derivative" ("CPAC.utils.interfaces.function.Function")
201112-22:15:08,188 nipype.workflow INFO:
	 [Node] Setting-up "template_skull_for_func_derivative" in "/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative".
201112-22:15:08,194 nipype.workflow INFO:
	 [Node] Running "template_skull_for_func_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference.nii.gz
201112-22:15:08,900 nipype.workflow INFO:
	 [Node] Finished "template_skull_for_func_derivative".
201112-22:15:08,918 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.resampled_template_skull_for_func_derivative".
201112-22:15:08,919 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.resampled_template_skull_for_func_preproc" in "/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_skull_for_func_preproc".
201112-22:15:08,923 nipype.workflow INFO:
	 [Node] Running "resampled_template_skull_for_func_preproc" ("CPAC.utils.interfaces.function.Function")
201112-22:15:09,134 nipype.workflow INFO:
	 [Node] Setting-up "template_skull_for_func_preproc" in "/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc".
201112-22:15:09,139 nipype.workflow INFO:
	 [Node] Running "template_skull_for_func_preproc" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference.nii.gz
201112-22:15:09,762 nipype.workflow INFO:
	 [Node] Finished "template_skull_for_func_preproc".
201112-22:15:09,777 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.resampled_template_skull_for_func_preproc".
201112-22:15:09,779 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.check_for_s3_PRIORS_WHITE" in "/outputs/tmp/resting_preproc_sub-026_ses-2/check_for_s3_PRIORS_WHITE".
201112-22:15:09,783 nipype.workflow INFO:
	 [Node] Running "check_for_s3_PRIORS_WHITE" ("CPAC.utils.interfaces.function.Function")
201112-22:15:10,63 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.check_for_s3_PRIORS_WHITE".
201112-22:15:10,66 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.check_for_s3_PRIORS_GRAY" in "/outputs/tmp/resting_preproc_sub-026_ses-2/check_for_s3_PRIORS_GRAY".
201112-22:15:10,69 nipype.workflow INFO:
	 [Node] Running "check_for_s3_PRIORS_GRAY" ("CPAC.utils.interfaces.function.Function")
201112-22:15:10,296 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.check_for_s3_PRIORS_GRAY".
201112-22:15:10,297 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.check_for_s3_PRIORS_CSF" in "/outputs/tmp/resting_preproc_sub-026_ses-2/check_for_s3_PRIORS_CSF".
201112-22:15:10,302 nipype.workflow INFO:
	 [Node] Running "check_for_s3_PRIORS_CSF" ("CPAC.utils.interfaces.function.Function")
201112-22:15:10,577 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.check_for_s3_PRIORS_CSF".
201112-22:15:10,578 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.resampled_template_skull_for_anat" in "/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_skull_for_anat".
201112-22:15:10,582 nipype.workflow INFO:
	 [Node] Running "resampled_template_skull_for_anat" ("CPAC.utils.interfaces.function.Function")
201112-22:15:10,795 nipype.workflow INFO:
	 [Node] Setting-up "template_skull_for_anat" in "/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_skull_for_anat/template_skull_for_anat".
201112-22:15:10,801 nipype.workflow INFO:
	 [Node] Running "template_skull_for_anat" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix mni_icbm152_t1_tal_nlin_asym_09c_resample.nii.gz -rmode Cu -dxyz 1.000000 1.000000 1.000000 -inset /outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_skull_for_anat/template_skull_for_anat/mni_icbm152_t1_tal_nlin_asym_09c.nii
201112-22:15:11,54 nipype.interface INFO:
	 stderr 2020-11-12T22:15:11.054115:** AFNI converts NIFTI_datatype=4 (INT16) in file /outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_skull_for_anat/template_skull_for_anat/mni_icbm152_t1_tal_nlin_asym_09c.nii to FLOAT32
201112-22:15:11,54 nipype.interface INFO:
	 stderr 2020-11-12T22:15:11.054713:     Warnings of this type will be muted for this session.
201112-22:15:11,54 nipype.interface INFO:
	 stderr 2020-11-12T22:15:11.054713:     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201112-22:15:13,667 nipype.workflow WARNING:
	 [Node] Error on "template_skull_for_anat" (/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_skull_for_anat/template_skull_for_anat)
201112-22:15:13,698 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-2.resampled_template_skull_for_anat" (/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_skull_for_anat)
201112-22:15:13,711 nipype.workflow ERROR:
	 Node resampled_template_skull_for_anat failed to run on host node094.
201112-22:15:13,716 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221513-av2902-resampled_template_skull_for_anat-21606f07-bee4-4a89-a4eb-84c46095c979.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 523, in run
    outputs = self.aggregate_outputs(runtime)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 597, in aggregate_outputs
    predicted_outputs = self._list_outputs()
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/afni/base.py", line 218, in _list_outputs
    outputs = super(AFNICommand, self)._list_outputs()
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 1167, in _list_outputs
    outputs[out_name] = os.path.abspath(fname)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 521, in run
    runtime = self._run_interface(runtime)
  File "/code/CPAC/utils/interfaces/function.py", line 152, in _run_interface
    out = function_handle(**args)
  File "/code/CPAC/utils/datasource.py", line 586, in resolve_resolution
    resampled_template = resample.run()
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:13,725 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.resampled_template_brain_for_anat" in "/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_brain_for_anat".
201112-22:15:13,731 nipype.workflow INFO:
	 [Node] Running "resampled_template_brain_for_anat" ("CPAC.utils.interfaces.function.Function")
201112-22:15:13,945 nipype.workflow INFO:
	 [Node] Setting-up "template_brain_for_anat" in "/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_brain_for_anat/template_brain_for_anat".
201112-22:15:13,952 nipype.workflow INFO:
	 [Node] Running "template_brain_for_anat" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix tpl-MNI152NLin2009cAsym_res-01_desc-brain_T1w_resample.nii.gz -rmode Cu -dxyz 1.000000 1.000000 1.000000 -inset /outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_brain_for_anat/template_brain_for_anat/tpl-MNI152NLin2009cAsym_res-01_desc-brain_T1w.nii.gz
201112-22:15:15,804 nipype.workflow WARNING:
	 [Node] Error on "template_brain_for_anat" (/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_brain_for_anat/template_brain_for_anat)
201112-22:15:15,836 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-2.resampled_template_brain_for_anat" (/outputs/tmp/resting_preproc_sub-026_ses-2/resampled_template_brain_for_anat)
201112-22:15:15,850 nipype.workflow ERROR:
	 Node resampled_template_brain_for_anat failed to run on host node094.
201112-22:15:15,855 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221515-av2902-resampled_template_brain_for_anat-a122c362-3a77-46a3-86d8-9d64ffffc80d.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 523, in run
    outputs = self.aggregate_outputs(runtime)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 597, in aggregate_outputs
    predicted_outputs = self._list_outputs()
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/afni/base.py", line 218, in _list_outputs
    outputs = super(AFNICommand, self)._list_outputs()
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 1167, in _list_outputs
    outputs[out_name] = os.path.abspath(fname)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 521, in run
    runtime = self._run_interface(runtime)
  File "/code/CPAC/utils/interfaces/function.py", line 152, in _run_interface
    out = function_handle(**args)
  File "/code/CPAC/utils/datasource.py", line 586, in resolve_resolution
    resampled_template = resample.run()
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:15,872 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.check_for_s3_acpc_template_brain" in "/outputs/tmp/resting_preproc_sub-026_ses-2/check_for_s3_acpc_template_brain".
201112-22:15:15,879 nipype.workflow INFO:
	 [Node] Running "check_for_s3_acpc_template_brain" ("CPAC.utils.interfaces.function.Function")
201112-22:15:16,107 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.check_for_s3_acpc_template_brain".
201112-22:15:16,114 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-2.check_for_s3_acpc_template_skull" in "/outputs/tmp/resting_preproc_sub-026_ses-2/check_for_s3_acpc_template_skull".
201112-22:15:16,121 nipype.workflow INFO:
	 [Node] Running "check_for_s3_acpc_template_skull" ("CPAC.utils.interfaces.function.Function")
201112-22:15:16,444 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-2.check_for_s3_acpc_template_skull".
201112-22:15:16,445 nipype.workflow INFO:
	 ***********************************
201112-22:15:16,445 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.func_gather_0.select_scan_params.b4
201112-22:15:16,446 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-220556-av2902-select_scan_params.b4-eddd7b41-dca1-476d-b513-068ce63b1a04.pklz
201112-22:15:16,446 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.func_gather_0.selectrest.b4
201112-22:15:16,446 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-220556-av2902-selectrest.b4-56363e91-6774-4f3f-9ede-47491f74ca47.pklz
201112-22:15:16,446 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan.b4
201112-22:15:16,446 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-220557-av2902-check_func_scan.b4-06250430-a644-4cda-b5d6-ae9716a497e3.pklz
201112-22:15:16,446 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.func_gather_0.select_scan_params.b3
201112-22:15:16,446 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-220557-av2902-select_scan_params.b3-e29dd92f-4f45-448f-aa67-e30367ff75e6.pklz
201112-22:15:16,447 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.func_gather_0.selectrest.b3
201112-22:15:16,448 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-220557-av2902-selectrest.b3-c0200ab9-c139-4946-b77a-0fc3d2bc31e4.pklz
201112-22:15:16,448 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan.b3
201112-22:15:16,448 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-220557-av2902-check_func_scan.b3-3796764b-f33f-4bfd-97b7-e769776ed018.pklz
201112-22:15:16,448 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.func_gather_0.select_scan_params.b2
201112-22:15:16,448 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-220558-av2902-select_scan_params.b2-bc8bc608-6276-4627-807f-d0cedea5a893.pklz
201112-22:15:16,448 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.func_gather_0.selectrest.b2
201112-22:15:16,449 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-220558-av2902-selectrest.b2-2b2da5a9-1594-4dd7-b3a6-cde8a368d367.pklz
201112-22:15:16,449 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.func_gather_0.check_func_scan.b2
201112-22:15:16,449 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-220558-av2902-check_func_scan.b2-c5685c6b-3d44-4fa6-8de1-18c48222d8dd.pklz
201112-22:15:16,449 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.func_gather_0.select_scan_params.b1
201112-22:15:16,449 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-220558-av2902-select_scan_params.b1-958ca922-e993-42c3-aced-57c4db76ebd5.pklz
201112-22:15:16,449 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.func_gather_0.check_for_s3.b1
201112-22:15:16,449 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-220559-av2902-check_for_s3.b1-0402782f-c3bb-4161-b2c7-9b6857c8ff78.pklz
201112-22:15:16,450 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_tmpl
201112-22:15:16,450 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221456-av2902-lap_tmpl-76a1462f-3be0-4e5a-9588-180e2fd65129.pklz
201112-22:15:16,450 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.anat_preproc_niworkflows_ants_0.anat_reorient
201112-22:15:16,450 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221505-av2902-anat_reorient-5f6e2292-618c-403b-b923-75955e6d9725.pklz
201112-22:15:16,451 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.resampled_template_skull_for_anat
201112-22:15:16,451 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221513-av2902-resampled_template_skull_for_anat-21606f07-bee4-4a89-a4eb-84c46095c979.pklz
201112-22:15:16,451 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-2.resampled_template_brain_for_anat
201112-22:15:16,451 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221515-av2902-resampled_template_brain_for_anat-a122c362-3a77-46a3-86d8-9d64ffffc80d.pklz
201112-22:15:16,451 nipype.workflow INFO:
	 ***********************************
201112-22:15:16,482 nipype.workflow INFO:
	 

Error of subject workflow resting_preproc_sub-026_ses-2

CPAC run error:

    Pipeline configuration: cpac_fmriprep-options
    Subject workflow: resting_preproc_sub-026_ses-2
    Elapsed run time (minutes): 9.552836239337921
    Timing information saved in /outputs/log/cpac_individual_timing_cpac_fmriprep-options.csv
    System time of start:      2020-11-12 22:05:49


201112-22:15:16,501 nipype.workflow INFO:
	 

    C-PAC version: 1.7.2

    Setting maximum number of cores per participant to 1
    Setting number of participants at once to 1
    Setting OMP_NUM_THREADS to 1
    Setting MKL_NUM_THREADS to 1
    Setting ANTS/ITK thread usage to 1
    Maximum potential number of cores that might be used during this run: 1


201112-22:15:18,794 nipype.workflow INFO:
	 

Pipeline building completed.


201112-22:15:18,802 nipype.workflow INFO:
	 

Strategy forks:
- cpac_fmriprep-options


201112-22:15:21,538 nipype.workflow INFO:
	 Workflow resting_preproc_sub-026_ses-3 settings: ['check', 'execution', 'logging', 'monitoring']
201112-22:15:22,832 nipype.workflow INFO:
	 Running serially.
201112-22:15:22,852 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-2/select_scan_params".
201112-22:15:22,885 nipype.workflow INFO:
	 [Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:15:23,122 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params".
201112-22:15:23,144 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-2/s3_scan_params".
201112-22:15:23,157 nipype.workflow INFO:
	 [Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:15:23,388 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.func_gather_0.s3_scan_params".
201112-22:15:23,391 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.scan_params_0" in "/outputs/tmp/resting_preproc_sub-026_ses-3/_scan_tgng_run-2/scan_params_0".
201112-22:15:23,401 nipype.workflow INFO:
	 [Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:15:23,635 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.scan_params_0".
201112-22:15:23,637 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-2/selectrest".
201112-22:15:23,673 nipype.workflow INFO:
	 [Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:15:23,914 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.func_gather_0.selectrest".
201112-22:15:23,926 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-2/check_for_s3".
201112-22:15:23,934 nipype.workflow INFO:
	 [Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:15:24,214 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.func_gather_0.check_for_s3".
201112-22:15:24,234 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.edit_func_0.func_get_idx" in "/outputs/tmp/resting_preproc_sub-026_ses-3/edit_func_0/_scan_tgng_run-2/func_get_idx".
201112-22:15:24,248 nipype.workflow INFO:
	 [Node] Running "func_get_idx" ("nipype.interfaces.utility.wrappers.Function")
201112-22:15:24,504 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.edit_func_0.func_get_idx" (/outputs/tmp/resting_preproc_sub-026_ses-3/edit_func_0/_scan_tgng_run-2/func_get_idx)
201112-22:15:24,524 nipype.workflow ERROR:
	 Node func_get_idx.b8 failed to run on host node094.
201112-22:15:24,527 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221524-av2902-func_get_idx.b8-da1401b1-67e9-436d-82f7-93ba38731f95.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:24,536 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.sinker_0_raw_functional" in "/outputs/tmp/resting_preproc_sub-026_ses-3/_scan_tgng_run-2/sinker_0_raw_functional".
201112-22:15:24,547 nipype.workflow INFO:
	 [Node] Running "sinker_0_raw_functional" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:15:25,83 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.sinker_0_raw_functional" (/outputs/tmp/resting_preproc_sub-026_ses-3/_scan_tgng_run-2/sinker_0_raw_functional)
201112-22:15:25,103 nipype.workflow ERROR:
	 Node sinker_0_raw_functional.b8 failed to run on host node094.
201112-22:15:25,107 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221525-av2902-sinker_0_raw_functional.b8-d3fc8914-590e-4da7-87a4-812e835bf4a2.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:25,117 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-2/check_func_scan".
201112-22:15:25,157 nipype.workflow INFO:
	 [Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:15:25,407 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" (/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-2/check_func_scan)
201112-22:15:25,432 nipype.workflow ERROR:
	 Node check_func_scan.b8 failed to run on host node094.
201112-22:15:25,436 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221525-av2902-check_func_scan.b8-ad7897ae-a1d8-48d9-935a-93f6a93dbc18.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:25,458 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-1/select_scan_params".
201112-22:15:25,497 nipype.workflow INFO:
	 [Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:15:25,827 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params".
201112-22:15:25,862 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-1/s3_scan_params".
201112-22:15:25,877 nipype.workflow INFO:
	 [Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:15:26,124 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.func_gather_0.s3_scan_params".
201112-22:15:26,135 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.scan_params_0" in "/outputs/tmp/resting_preproc_sub-026_ses-3/_scan_tgng_run-1/scan_params_0".
201112-22:15:26,147 nipype.workflow INFO:
	 [Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:15:26,392 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.scan_params_0".
201112-22:15:26,396 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-1/selectrest".
201112-22:15:26,456 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" - collecting precomputed outputs
201112-22:15:26,464 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" found cached.
201112-22:15:26,490 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-1/check_for_s3".
201112-22:15:26,559 nipype.workflow INFO:
	 [Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:15:26,825 nipype.workflow ERROR:
	 Node check_for_s3.b7 failed to run on host node094.
201112-22:15:26,837 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221526-av2902-check_for_s3.b7-2d078c4e-7134-4c2e-bbde-5a9f7fb02da3.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-1/check_for_s3/_0x236b51e709d7061e5ad4d241eb3b73d0_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-1/check_for_s3/_0x236b51e709d7061e5ad4d241eb3b73d0.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-1/check_for_s3/_0x236b51e709d7061e5ad4d241eb3b73d0_unfinished.json'

201112-22:15:26,846 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-1/check_func_scan".
201112-22:15:26,951 nipype.workflow INFO:
	 [Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:15:27,233 nipype.workflow ERROR:
	 Node check_func_scan.b7 failed to run on host node094.
201112-22:15:27,244 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221527-av2902-check_func_scan.b7-3fe9020c-c9b0-4209-bb44-5d28971fa04e.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-1/check_func_scan/_0x39ab09482c374058f72f84a46c9cf592_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-1/check_func_scan/_0x39ab09482c374058f72f84a46c9cf592.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_tgng_run-1/check_func_scan/_0x39ab09482c374058f72f84a46c9cf592_unfinished.json'

201112-22:15:27,267 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-2/select_scan_params".
201112-22:15:27,381 nipype.workflow INFO:
	 [Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:15:27,660 nipype.workflow ERROR:
	 Node select_scan_params.b6 failed to run on host node094.
201112-22:15:27,672 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221527-av2902-select_scan_params.b6-50adcc1d-4260-4a58-8f4c-43b203b0ab52.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-2/select_scan_params/_0x1559e6f6f0f682cbba30330aea522823_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-2/select_scan_params/_0x1559e6f6f0f682cbba30330aea522823.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-2/select_scan_params/_0x1559e6f6f0f682cbba30330aea522823_unfinished.json'

201112-22:15:27,691 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-2/selectrest".
201112-22:15:27,800 nipype.workflow ERROR:
	 Node selectrest.b6 failed to run on host node093.
201112-22:15:27,811 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221527-av2902-selectrest.b6-88e73345-9cbe-4b9d-89a9-4b938fc7fc99.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 449, in run
    emptydirs(outdir, noexist_ok=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 828, in emptydirs
    raise ex
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 818, in emptydirs
    shutil.rmtree(path)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 498, in rmtree
    onerror(os.rmdir, path, sys.exc_info())
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 496, in rmtree
    os.rmdir(path)
OSError: [Errno 39] Directory not empty: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-2/selectrest'

201112-22:15:27,829 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-2/check_func_scan".
201112-22:15:27,922 nipype.workflow ERROR:
	 Node check_func_scan.b6 failed to run on host node094.
201112-22:15:27,930 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221527-av2902-check_func_scan.b6-643a6816-0e8e-47da-a7af-09b54165d575.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 449, in run
    emptydirs(outdir, noexist_ok=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 828, in emptydirs
    raise ex
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 818, in emptydirs
    shutil.rmtree(path)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 498, in rmtree
    onerror(os.rmdir, path, sys.exc_info())
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 496, in rmtree
    os.rmdir(path)
OSError: [Errno 39] Directory not empty: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-2/check_func_scan'

201112-22:15:27,943 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-1/select_scan_params".
201112-22:15:27,985 nipype.workflow INFO:
	 [Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:15:28,266 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" (/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-1/select_scan_params)
201112-22:15:28,287 nipype.workflow ERROR:
	 Node select_scan_params.b5 failed to run on host node094.
201112-22:15:28,292 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221528-av2902-select_scan_params.b5-38d8b4fe-89af-4623-a133-53ae1599e3da.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 266, in open
    return ds.open(path, mode, encoding=encoding, newline=newline)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 622, in open
    encoding=encoding, newline=newline)
FileNotFoundError: [Errno 2] No such file or directory: '.proc-23199_time-1605237327.9860857_freq-1.00'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 475, in run
    os.remove(hashfile_unfinished)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-1/select_scan_params/_0x2dffa7ba3928c40b5c47c829d1a0cdf8_unfinished.json'

201112-22:15:28,321 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-1/selectrest".
201112-22:15:28,386 nipype.workflow INFO:
	 [Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:15:28,677 nipype.workflow ERROR:
	 Node selectrest.b5 failed to run on host node094.
201112-22:15:28,688 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221528-av2902-selectrest.b5-d1536989-050e-4304-8a7c-2143a2e8417b.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-1/selectrest/_0x5ac36ae6455109371969022e69cd302c_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-1/selectrest/_0x5ac36ae6455109371969022e69cd302c.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-1/selectrest/_0x5ac36ae6455109371969022e69cd302c_unfinished.json'

201112-22:15:28,711 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-1/check_func_scan".
201112-22:15:28,840 nipype.workflow ERROR:
	 Node check_func_scan.b5 failed to run on host node093.
201112-22:15:28,852 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221528-av2902-check_func_scan.b5-f9e1de15-1c2a-40ef-bfdd-be2e4d56ffa9.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 449, in run
    emptydirs(outdir, noexist_ok=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 828, in emptydirs
    raise ex
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 818, in emptydirs
    shutil.rmtree(path)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 498, in rmtree
    onerror(os.rmdir, path, sys.exc_info())
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 496, in rmtree
    os.rmdir(path)
OSError: [Errno 39] Directory not empty: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rewav_run-1/check_func_scan'

201112-22:15:28,876 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rest_run-1/select_scan_params".
201112-22:15:28,963 nipype.workflow ERROR:
	 Node select_scan_params.b4 failed to run on host node094.
201112-22:15:28,971 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221528-av2902-select_scan_params.b4-c3ac09c3-7ffc-4e0d-b072-f67489ba9e03.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 449, in run
    emptydirs(outdir, noexist_ok=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 828, in emptydirs
    raise ex
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 818, in emptydirs
    shutil.rmtree(path)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 498, in rmtree
    onerror(os.rmdir, path, sys.exc_info())
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 496, in rmtree
    os.rmdir(path)
OSError: [Errno 39] Directory not empty: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rest_run-1/select_scan_params'

201112-22:15:28,981 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rest_run-1/selectrest".
201112-22:15:29,19 nipype.workflow INFO:
	 [Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:15:29,294 nipype.workflow ERROR:
	 Node selectrest.b4 failed to run on host node094.
201112-22:15:29,304 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221529-av2902-selectrest.b4-998f56dc-9a7c-49b5-a610-35dfb87cabba.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 482, in run
    self, report_type='postexec', is_mapnode=isinstance(self, MapNode))
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 231, in write_report
    with open(report_file, 'at') as fp:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rest_run-1/selectrest/_report/report.rst'

201112-22:15:29,338 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rest_run-1/check_func_scan".
201112-22:15:29,436 nipype.workflow ERROR:
	 Node check_func_scan.b4 failed to run on host node094.
201112-22:15:29,447 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221529-av2902-check_func_scan.b4-0997fc0b-2917-4300-81bd-c376d78462ee.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 449, in run
    emptydirs(outdir, noexist_ok=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 828, in emptydirs
    raise ex
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 818, in emptydirs
    shutil.rmtree(path)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 498, in rmtree
    onerror(os.rmdir, path, sys.exc_info())
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 496, in rmtree
    os.rmdir(path)
OSError: [Errno 39] Directory not empty: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_rest_run-1/check_func_scan'

201112-22:15:29,465 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_conditioning_run-1/select_scan_params".
201112-22:15:29,506 nipype.workflow INFO:
	 [Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:15:29,786 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params".
201112-22:15:29,811 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.s3_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_conditioning_run-1/s3_scan_params".
201112-22:15:29,823 nipype.workflow INFO:
	 [Node] Running "s3_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:15:30,71 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.func_gather_0.s3_scan_params".
201112-22:15:30,75 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.scan_params_0" in "/outputs/tmp/resting_preproc_sub-026_ses-3/_scan_conditioning_run-1/scan_params_0".
201112-22:15:30,88 nipype.workflow INFO:
	 [Node] Running "scan_params_0" ("CPAC.utils.interfaces.function.Function")
201112-22:15:30,334 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.scan_params_0".
201112-22:15:30,359 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_conditioning_run-1/selectrest".
201112-22:15:30,402 nipype.workflow INFO:
	 [Node] Cached "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" - collecting precomputed outputs
201112-22:15:30,402 nipype.workflow INFO:
	 [Node] "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" found cached.
201112-22:15:30,416 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_conditioning_run-1/check_for_s3".
201112-22:15:30,497 nipype.workflow ERROR:
	 Node check_for_s3.b3 failed to run on host node093.
201112-22:15:30,508 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221530-av2902-check_for_s3.b3-20a366da-bb5c-451d-a09d-5606b754e8c3.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 449, in run
    emptydirs(outdir, noexist_ok=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 830, in emptydirs
    raise ex
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 818, in emptydirs
    shutil.rmtree(path)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 494, in rmtree
    _rmtree_safe_fd(fd, path, onerror)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 452, in _rmtree_safe_fd
    onerror(os.unlink, fullname, sys.exc_info())
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 450, in _rmtree_safe_fd
    os.unlink(entry.name, dir_fd=topfd)
FileNotFoundError: [Errno 2] No such file or directory: '.proc-2564_time-1605237330.1308181_freq-1.00'

201112-22:15:30,519 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_conditioning_run-1/check_func_scan".
201112-22:15:30,628 nipype.workflow INFO:
	 [Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:15:30,909 nipype.workflow ERROR:
	 Node check_func_scan.b3 failed to run on host node094.
201112-22:15:30,921 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221530-av2902-check_func_scan.b3-7796b93f-e8cd-4d85-8232-dc16d6107c5e.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_conditioning_run-1/check_func_scan/_0x1baa350ee652d6d766548dfe1383c825_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_conditioning_run-1/check_func_scan/_0x1baa350ee652d6d766548dfe1383c825.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_conditioning_run-1/check_func_scan/_0x1baa350ee652d6d766548dfe1383c825_unfinished.json'

201112-22:15:30,940 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-3/select_scan_params".
201112-22:15:31,57 nipype.workflow INFO:
	 [Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:15:31,335 nipype.workflow ERROR:
	 Node select_scan_params.b2 failed to run on host node094.
201112-22:15:31,347 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221531-av2902-select_scan_params.b2-7d6acfb9-e592-4510-a1df-31a2b0e11008.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-3/select_scan_params/_0xec34cac73d56d0785a79064327ed1485_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-3/select_scan_params/_0xec34cac73d56d0785a79064327ed1485.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-3/select_scan_params/_0xec34cac73d56d0785a79064327ed1485_unfinished.json'

201112-22:15:31,369 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-3/selectrest".
201112-22:15:31,476 nipype.workflow INFO:
	 [Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:15:31,758 nipype.workflow ERROR:
	 Node selectrest.b2 failed to run on host node094.
201112-22:15:31,770 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221531-av2902-selectrest.b2-3ebcd5e1-1d2b-4d3a-a7f1-5669f8b2ba9b.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-3/selectrest/_0x1e2cbd09547724b9a21df14171d4b951_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-3/selectrest/_0x1e2cbd09547724b9a21df14171d4b951.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-3/selectrest/_0x1e2cbd09547724b9a21df14171d4b951_unfinished.json'

201112-22:15:31,793 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-3/check_func_scan".
201112-22:15:31,906 nipype.workflow ERROR:
	 Node check_func_scan.b2 failed to run on host node093.
201112-22:15:31,919 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221531-av2902-check_func_scan.b2-97a54684-a9af-446a-a7bb-affbc0323a30.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 449, in run
    emptydirs(outdir, noexist_ok=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 830, in emptydirs
    raise ex
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 818, in emptydirs
    shutil.rmtree(path)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 494, in rmtree
    _rmtree_safe_fd(fd, path, onerror)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 452, in _rmtree_safe_fd
    onerror(os.unlink, fullname, sys.exc_info())
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 450, in _rmtree_safe_fd
    os.unlink(entry.name, dir_fd=topfd)
FileNotFoundError: [Errno 2] No such file or directory: '.proc-2564_time-1605237331.5862248_freq-1.00'

201112-22:15:31,937 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-2/select_scan_params".
201112-22:15:32,56 nipype.workflow INFO:
	 [Node] Running "select_scan_params" ("CPAC.utils.interfaces.function.Function")
201112-22:15:32,341 nipype.workflow ERROR:
	 Node select_scan_params.b1 failed to run on host node094.
201112-22:15:32,353 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221532-av2902-select_scan_params.b1-26aa62ad-bb89-430f-b9ad-ac6549644387.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-2/select_scan_params/_0x93df74a8fcda2635f97d82cf03f4a819_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-2/select_scan_params/_0x93df74a8fcda2635f97d82cf03f4a819.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-2/select_scan_params/_0x93df74a8fcda2635f97d82cf03f4a819_unfinished.json'

201112-22:15:32,377 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-2/selectrest".
201112-22:15:32,483 nipype.workflow INFO:
	 [Node] Running "selectrest" ("CPAC.utils.interfaces.function.Function")
201112-22:15:32,760 nipype.workflow ERROR:
	 Node selectrest.b1 failed to run on host node094.
201112-22:15:32,771 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221532-av2902-selectrest.b1-698f15c9-eea7-49f8-b361-30c76e975951.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-2/selectrest/_0xb676923ab0580d24a13160ffc9a51a55_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-2/selectrest/_0xb676923ab0580d24a13160ffc9a51a55.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-2/selectrest/_0xb676923ab0580d24a13160ffc9a51a55_unfinished.json'

201112-22:15:32,793 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-2/check_func_scan".
201112-22:15:32,899 nipype.workflow INFO:
	 [Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:15:33,182 nipype.workflow ERROR:
	 Node check_func_scan.b1 failed to run on host node094.
201112-22:15:33,193 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221533-av2902-check_func_scan.b1-a4f55769-6b2a-45aa-bff7-8273c7cac44e.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 566, in move
    os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-2/check_func_scan/_0x15a402d0137ed73440781214a698917d_unfinished.json' -> '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-2/check_func_scan/_0x15a402d0137ed73440781214a698917d.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
    hashfile_unfinished.replace('_unfinished', ''))
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 580, in move
    copy_function(src, real_dst)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 266, in copy2
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 120, in copyfile
    with open(src, 'rb') as fsrc:
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-2/check_func_scan/_0x15a402d0137ed73440781214a698917d_unfinished.json'

201112-22:15:33,213 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-1/select_scan_params".
201112-22:15:33,334 nipype.workflow ERROR:
	 Node select_scan_params.b0 failed to run on host node093.
201112-22:15:33,345 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221533-av2902-select_scan_params.b0-95cba77b-fae9-42ed-b4bf-c9d1315d076e.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 449, in run
    emptydirs(outdir, noexist_ok=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 828, in emptydirs
    raise ex
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 818, in emptydirs
    shutil.rmtree(path)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 498, in rmtree
    onerror(os.rmdir, path, sys.exc_info())
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 496, in rmtree
    os.rmdir(path)
OSError: [Errno 39] Directory not empty: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-1/select_scan_params'

201112-22:15:33,364 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.selectrest" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-1/selectrest".
201112-22:15:33,465 nipype.workflow ERROR:
	 Node selectrest.b0 failed to run on host node094.
201112-22:15:33,472 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221533-av2902-selectrest.b0-2dc8e5cb-c2b7-4846-aaee-216c585303fb.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 449, in run
    emptydirs(outdir, noexist_ok=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 828, in emptydirs
    raise ex
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 818, in emptydirs
    shutil.rmtree(path)
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 498, in rmtree
    onerror(os.rmdir, path, sys.exc_info())
  File "/usr/local/miniconda/lib/python3.7/shutil.py", line 496, in rmtree
    os.rmdir(path)
OSError: [Errno 39] Directory not empty: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-1/selectrest'

201112-22:15:33,488 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-1/check_func_scan".
201112-22:15:33,525 nipype.workflow INFO:
	 [Node] Running "check_func_scan" ("CPAC.utils.interfaces.function.Function")
201112-22:15:33,783 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan" (/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-1/check_func_scan)
201112-22:15:33,810 nipype.workflow ERROR:
	 Node check_func_scan.b0 failed to run on host node094.
201112-22:15:33,814 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221533-av2902-check_func_scan.b0-051245a2-7e1c-427f-94b9-07b3b089ba7c.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 266, in open
    return ds.open(path, mode, encoding=encoding, newline=newline)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 624, in open
    raise IOError("%s not found." % path)
OSError: .proc-23199_time-1605237333.5262167_freq-1.00 not found.

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 475, in run
    os.remove(hashfile_unfinished)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/func_gather_0/_scan_ci_run-1/check_func_scan/_0x5f18b440baa0a24b8c6168b91da62552_unfinished.json'

201112-22:15:33,838 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.roi_dataflow_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-026_ses-3/roi_dataflow_0/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3".
201112-22:15:33,852 nipype.workflow INFO:
	 [Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:15:34,108 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.roi_dataflow_0.check_for_s3" (/outputs/tmp/resting_preproc_sub-026_ses-3/roi_dataflow_0/_mask_Yeo-7_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3)
201112-22:15:34,131 nipype.workflow ERROR:
	 Node check_for_s3.a1 failed to run on host node094.
201112-22:15:34,135 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221534-av2902-check_for_s3.a1-f13a93ea-5c6d-4d45-a8f9-657771feb81b.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:34,144 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.roi_dataflow_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-026_ses-3/roi_dataflow_0/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3".
201112-22:15:34,152 nipype.workflow INFO:
	 [Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:15:34,405 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.roi_dataflow_0.check_for_s3" (/outputs/tmp/resting_preproc_sub-026_ses-3/roi_dataflow_0/_mask_Yeo-7-liberal_space-MNI152NLin6_res-1x1x1_mask_file_..ndmg_atlases..label..Human..Yeo-7-liberal_space-MNI152NLin6_res-1x1x1.nii.gz/check_for_s3)
201112-22:15:34,426 nipype.workflow ERROR:
	 Node check_for_s3.a0 failed to run on host node094.
201112-22:15:34,430 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221534-av2902-check_for_s3.a0-02d9f09b-3705-456d-a534-e5e80bcd16ab.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:34,439 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_tmpl" in "/outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl".
201112-22:15:34,448 nipype.workflow INFO:
	 [Node] Running "lap_tmpl" ("CPAC.utils.interfaces.ants.ImageMath"), a CommandLine Interface with command:
ImageMath 3 T_template0_maths.nii.gz Laplacian /ants_template/oasis/T_template0.nii.gz 1.5 1
201112-22:15:39,724 nipype.interface INFO:
	 stderr 2020-11-12T22:15:39.724727:** ERROR (nifti_image_write_hdr_img2): cannot open output file 'T_template0_maths.nii.gz'
201112-22:15:39,942 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_tmpl" (/outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/lap_tmpl)
201112-22:15:39,955 nipype.workflow ERROR:
	 Node lap_tmpl failed to run on host node094.
201112-22:15:39,957 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221539-av2902-lap_tmpl-363cbf2f-65d4-4c06-a9c9-51b95d378023.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 523, in run
    outputs = self.aggregate_outputs(runtime)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 597, in aggregate_outputs
    predicted_outputs = self._list_outputs()
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 1167, in _list_outputs
    outputs[out_name] = os.path.abspath(fname)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:39,971 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_tmpl" in "/outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_preproc_niworkflows_ants_0_skullstrip/anat_skullstrip_ants/res_tmpl".
201112-22:15:39,979 nipype.workflow INFO:
	 [Node] Running "res_tmpl" ("CPAC.utils.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command:
ResampleImageBySpacing 3 /ants_template/oasis/T_template0.nii.gz T_template0_resampled.nii.gz 4 4 4 1
201112-22:15:40,572 nipype.interface INFO:
	 stdout 2020-11-12T22:15:40.572454: spacing [1, 1, 1] dim 3
201112-22:15:40,572 nipype.interface INFO:
	 stdout 2020-11-12T22:15:40.572977: spacing2 [4, 4, 4]
201112-22:15:40,573 nipype.interface INFO:
	 stdout 2020-11-12T22:15:40.573177: smoothing by : 3 dir 0
201112-22:15:40,911 nipype.interface INFO:
	 stdout 2020-11-12T22:15:40.911383: smoothing by : 3 dir 1
201112-22:15:41,326 nipype.interface INFO:
	 stdout 2020-11-12T22:15:41.326446: smoothing by : 3 dir 2
201112-22:15:42,111 nipype.interface INFO:
	 stdout 2020-11-12T22:15:42.111108: out space [4, 4, 4]
201112-22:15:42,111 nipype.interface INFO:
	 stdout 2020-11-12T22:15:42.111721: output size [54, 64, 72] spc [4, 4, 4]
201112-22:15:42,383 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.res_tmpl".
201112-22:15:42,385 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.anat_gather_0.check_for_s3" in "/outputs/tmp/resting_preproc_sub-026_ses-3/anat_gather_0/check_for_s3".
201112-22:15:42,391 nipype.workflow INFO:
	 [Node] Running "check_for_s3" ("CPAC.utils.interfaces.function.Function")
201112-22:15:42,671 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.anat_gather_0.check_for_s3".
201112-22:15:42,673 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.anat_preproc_niworkflows_ants_0.anat_deoblique" in "/outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_deoblique".
201112-22:15:42,817 nipype.workflow INFO:
	 [Node] Running "anat_deoblique" ("nipype.interfaces.afni.utils.Refit"), a CommandLine Interface with command:
3drefit -deoblique /outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-026_ses-3_T1w.nii.gz
201112-22:15:43,69 nipype.interface INFO:
	 stderr 2020-11-12T22:15:43.068986:++ 3drefit: AFNI version=AFNI_20.2.19 (Sep 27 2020) [64-bit]
201112-22:15:43,69 nipype.interface INFO:
	 stderr 2020-11-12T22:15:43.069349:++ Authored by: RW Cox
201112-22:15:43,76 nipype.interface INFO:
	 stderr 2020-11-12T22:15:43.076069:** AFNI converts NIFTI_datatype=4 (INT16) in file /outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-026_ses-3_T1w.nii.gz to FLOAT32
201112-22:15:43,76 nipype.interface INFO:
	 stderr 2020-11-12T22:15:43.076291:     Warnings of this type will be muted for this session.
201112-22:15:43,76 nipype.interface INFO:
	 stderr 2020-11-12T22:15:43.076291:     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
201112-22:15:43,77 nipype.interface INFO:
	 stderr 2020-11-12T22:15:43.077758:++ Processing AFNI dataset /outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-026_ses-3_T1w.nii.gz
201112-22:15:43,78 nipype.interface INFO:
	 stderr 2020-11-12T22:15:43.078627: + deoblique
201112-22:15:43,78 nipype.interface INFO:
	 stderr 2020-11-12T22:15:43.078895: + loading and re-writing dataset /outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-026_ses-3_T1w.nii.gz (/outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_deoblique/sub-026_ses-3_T1w.nii.gz in NIFTI storage)
201112-22:15:45,187 nipype.interface INFO:
	 stderr 2020-11-12T22:15:45.187921:++ 3drefit processed 1 datasets
201112-22:15:45,412 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.anat_preproc_niworkflows_ants_0.anat_deoblique" (/outputs/tmp/resting_preproc_sub-026_ses-3/anat_preproc_niworkflows_ants_0/anat_deoblique)
201112-22:15:45,427 nipype.workflow ERROR:
	 Node anat_deoblique failed to run on host node094.
201112-22:15:45,431 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221545-av2902-anat_deoblique-a0ccd604-d541-4b38-8945-134a58831763.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:45,456 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.sinker_0_motion_estimate_filter_info_plot" in "/outputs/tmp/resting_preproc_sub-026_ses-3/sinker_0_motion_estimate_filter_info_plot".
201112-22:15:45,465 nipype.workflow INFO:
	 [Node] Running "sinker_0_motion_estimate_filter_info_plot" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:15:45,697 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.sinker_0_motion_estimate_filter_info_plot".
201112-22:15:45,709 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.sinker_0_motion_estimate_filter_info_design" in "/outputs/tmp/resting_preproc_sub-026_ses-3/sinker_0_motion_estimate_filter_info_design".
201112-22:15:45,718 nipype.workflow INFO:
	 [Node] Running "sinker_0_motion_estimate_filter_info_design" ("CPAC.utils.interfaces.datasink.DataSink")
201112-22:15:45,945 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.sinker_0_motion_estimate_filter_info_design".
201112-22:15:45,946 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.check_for_s3_lateral_ventricles_mask" in "/outputs/tmp/resting_preproc_sub-026_ses-3/check_for_s3_lateral_ventricles_mask".
201112-22:15:45,952 nipype.workflow INFO:
	 [Node] Running "check_for_s3_lateral_ventricles_mask" ("CPAC.utils.interfaces.function.Function")
201112-22:15:46,185 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.check_for_s3_lateral_ventricles_mask".
201112-22:15:46,187 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.resampled_template_brain_for_func_derivative" in "/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_brain_for_func_derivative".
201112-22:15:46,192 nipype.workflow INFO:
	 [Node] Running "resampled_template_brain_for_func_derivative" ("CPAC.utils.interfaces.function.Function")
201112-22:15:46,426 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.resampled_template_brain_for_func_derivative".
201112-22:15:46,428 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.resampled_template_brain_for_func_preproc" in "/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_brain_for_func_preproc".
201112-22:15:46,433 nipype.workflow INFO:
	 [Node] Running "resampled_template_brain_for_func_preproc" ("CPAC.utils.interfaces.function.Function")
201112-22:15:46,669 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.resampled_template_brain_for_func_preproc".
201112-22:15:46,679 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.func_template_edge_0" in "/outputs/tmp/resting_preproc_sub-026_ses-3/func_template_edge_0".
201112-22:15:46,684 nipype.workflow INFO:
	 [Node] Running "func_template_edge_0" ("CPAC.utils.interfaces.function.Function")
201112-22:15:47,198 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.func_template_edge_0".
201112-22:15:47,219 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.montage_mfi_0.resample_o" in "/outputs/tmp/resting_preproc_sub-026_ses-3/montage_mfi_0/resample_o".
201112-22:15:47,255 nipype.workflow INFO:
	 [Node] Running "resample_o" ("CPAC.utils.interfaces.function.Function")
201112-22:15:47,748 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.montage_mfi_0.resample_o" (/outputs/tmp/resting_preproc_sub-026_ses-3/montage_mfi_0/resample_o)
201112-22:15:47,770 nipype.workflow ERROR:
	 Node resample_o failed to run on host node094.
201112-22:15:47,774 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221547-av2902-resample_o-9f9820c9-c26e-4c4a-8671-3ba5fabc5d09.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:47,783 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.resampled_template_skull_for_func_derivative" in "/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_derivative".
201112-22:15:47,791 nipype.workflow INFO:
	 [Node] Running "resampled_template_skull_for_func_derivative" ("CPAC.utils.interfaces.function.Function")
201112-22:15:48,6 nipype.workflow INFO:
	 [Node] Setting-up "template_skull_for_func_derivative" in "/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative".
201112-22:15:48,11 nipype.workflow INFO:
	 [Node] Running "template_skull_for_func_derivative" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative/tpl-MNI152NLin2009cAsym_res-02_T1w_reference.nii.gz
201112-22:15:48,410 nipype.interface INFO:
	 stderr 2020-11-12T22:15:48.410465:** ERROR (nifti_image_write_hdr_img2): cannot open output file './tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz'
201112-22:15:48,608 nipype.workflow WARNING:
	 [Node] Error on "template_skull_for_func_derivative" (/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_derivative/template_skull_for_func_derivative)
201112-22:15:48,641 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.resampled_template_skull_for_func_derivative" (/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_derivative)
201112-22:15:48,653 nipype.workflow ERROR:
	 Node resampled_template_skull_for_func_derivative failed to run on host node094.
201112-22:15:48,658 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221548-av2902-resampled_template_skull_for_func_derivative-7faf7cd8-f8a0-476a-84a7-ea0609268508.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 523, in run
    outputs = self.aggregate_outputs(runtime)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 597, in aggregate_outputs
    predicted_outputs = self._list_outputs()
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/afni/base.py", line 218, in _list_outputs
    outputs = super(AFNICommand, self)._list_outputs()
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 1167, in _list_outputs
    outputs[out_name] = os.path.abspath(fname)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 521, in run
    runtime = self._run_interface(runtime)
  File "/code/CPAC/utils/interfaces/function.py", line 152, in _run_interface
    out = function_handle(**args)
  File "/code/CPAC/utils/datasource.py", line 586, in resolve_resolution
    resampled_template = resample.run()
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:48,668 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.resampled_template_skull_for_func_preproc" in "/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_preproc".
201112-22:15:48,675 nipype.workflow INFO:
	 [Node] Running "resampled_template_skull_for_func_preproc" ("CPAC.utils.interfaces.function.Function")
201112-22:15:48,887 nipype.workflow INFO:
	 [Node] Setting-up "template_skull_for_func_preproc" in "/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc".
201112-22:15:48,894 nipype.workflow INFO:
	 [Node] Running "template_skull_for_func_preproc" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix tpl-MNI152NLin2009cAsym_res-02_T1w_reference_resample.nii.gz -rmode Cu -dxyz 2.000000 2.000000 2.000000 -inset /outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/tpl-MNI152NLin2009cAsym_res-02_T1w_reference.nii.gz
201112-22:15:49,612 nipype.workflow WARNING:
	 [Node] Error on "template_skull_for_func_preproc" (/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc)
201112-22:15:49,685 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.resampled_template_skull_for_func_preproc" (/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_preproc)
201112-22:15:49,703 nipype.workflow ERROR:
	 Node resampled_template_skull_for_func_preproc failed to run on host node094.
201112-22:15:49,707 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221549-av2902-resampled_template_skull_for_func_preproc-d990e452-b918-4f2a-9bd8-af9267ce50dc.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 523, in run
    outputs = self.aggregate_outputs(runtime)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 597, in aggregate_outputs
    predicted_outputs = self._list_outputs()
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/afni/base.py", line 218, in _list_outputs
    outputs = super(AFNICommand, self)._list_outputs()
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 1167, in _list_outputs
    outputs[out_name] = os.path.abspath(fname)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 639, in _run_command
    _save_resultfile(result, outdir, self.name)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 309, in save_resultfile
    savepkl(resultsfile, result)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 720, in savepkl
    pkl_file = gzip.open(filename, 'wb')
  File "/usr/local/miniconda/lib/python3.7/gzip.py", line 53, in open
    binary_file = GzipFile(filename, gz_mode, compresslevel)
  File "/usr/local/miniconda/lib/python3.7/gzip.py", line 163, in __init__
    fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/result_template_skull_for_func_preproc.pklz'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 521, in run
    runtime = self._run_interface(runtime)
  File "/code/CPAC/utils/interfaces/function.py", line 152, in _run_interface
    out = function_handle(**args)
  File "/code/CPAC/utils/datasource.py", line 586, in resolve_resolution
    resampled_template = resample.run()
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 475, in run
    os.remove(hashfile_unfinished)
FileNotFoundError: [Errno 2] No such file or directory: '/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_func_preproc/template_skull_for_func_preproc/_0x515bd94bea7e6e1cc7ab705d0b32d7d0_unfinished.json'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:49,717 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.check_for_s3_PRIORS_WHITE" in "/outputs/tmp/resting_preproc_sub-026_ses-3/check_for_s3_PRIORS_WHITE".
201112-22:15:49,725 nipype.workflow INFO:
	 [Node] Running "check_for_s3_PRIORS_WHITE" ("CPAC.utils.interfaces.function.Function")
201112-22:15:49,973 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.check_for_s3_PRIORS_WHITE".
201112-22:15:49,993 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.check_for_s3_PRIORS_GRAY" in "/outputs/tmp/resting_preproc_sub-026_ses-3/check_for_s3_PRIORS_GRAY".
201112-22:15:50,1 nipype.workflow INFO:
	 [Node] Running "check_for_s3_PRIORS_GRAY" ("CPAC.utils.interfaces.function.Function")
201112-22:15:50,237 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.check_for_s3_PRIORS_GRAY".
201112-22:15:50,238 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.check_for_s3_PRIORS_CSF" in "/outputs/tmp/resting_preproc_sub-026_ses-3/check_for_s3_PRIORS_CSF".
201112-22:15:50,245 nipype.workflow INFO:
	 [Node] Running "check_for_s3_PRIORS_CSF" ("CPAC.utils.interfaces.function.Function")
201112-22:15:50,479 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.check_for_s3_PRIORS_CSF".
201112-22:15:50,489 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.resampled_template_skull_for_anat" in "/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_anat".
201112-22:15:50,495 nipype.workflow INFO:
	 [Node] Running "resampled_template_skull_for_anat" ("CPAC.utils.interfaces.function.Function")
201112-22:15:50,740 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.resampled_template_skull_for_anat" (/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_skull_for_anat)
201112-22:15:50,766 nipype.workflow ERROR:
	 Node resampled_template_skull_for_anat failed to run on host node094.
201112-22:15:50,770 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221550-av2902-resampled_template_skull_for_anat-87f1e702-bd3e-4a8a-a77b-0cf24cdf3361.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 521, in run
    runtime = self._run_interface(runtime)
  File "/code/CPAC/utils/interfaces/function.py", line 152, in _run_interface
    out = function_handle(**args)
  File "/code/CPAC/utils/datasource.py", line 586, in resolve_resolution
    resampled_template = resample.run()
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 402, in run
    outdir = self.output_dir()
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 269, in output_dir
    self._output_dir = op.realpath(op.join(outputdir, self.name))
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 396, in realpath
    return abspath(path)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:50,780 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.resampled_template_brain_for_anat" in "/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_brain_for_anat".
201112-22:15:50,787 nipype.workflow INFO:
	 [Node] Running "resampled_template_brain_for_anat" ("CPAC.utils.interfaces.function.Function")
201112-22:15:51,0 nipype.workflow INFO:
	 [Node] Setting-up "template_brain_for_anat" in "/outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_brain_for_anat/template_brain_for_anat".
201112-22:15:51,13 nipype.workflow INFO:
	 [Node] Running "template_brain_for_anat" ("nipype.interfaces.afni.utils.Resample"), a CommandLine Interface with command:
3dresample -prefix tpl-MNI152NLin2009cAsym_res-01_desc-brain_T1w_resample.nii.gz -rmode Cu -dxyz 1.000000 1.000000 1.000000 -inset /outputs/tmp/resting_preproc_sub-026_ses-3/resampled_template_brain_for_anat/template_brain_for_anat/tpl-MNI152NLin2009cAsym_res-01_desc-brain_T1w.nii.gz
201112-22:15:52,789 nipype.workflow INFO:
	 [Node] Finished "template_brain_for_anat".
201112-22:15:52,812 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.resampled_template_brain_for_anat".
201112-22:15:52,835 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.anat_template_edge_0" in "/outputs/tmp/resting_preproc_sub-026_ses-3/anat_template_edge_0".
201112-22:15:52,840 nipype.workflow INFO:
	 [Node] Running "anat_template_edge_0" ("CPAC.utils.interfaces.function.Function")
201112-22:15:54,757 nipype.workflow WARNING:
	 [Node] Error on "resting_preproc_sub-026_ses-3.anat_template_edge_0" (/outputs/tmp/resting_preproc_sub-026_ses-3/anat_template_edge_0)
201112-22:15:54,781 nipype.workflow ERROR:
	 Node anat_template_edge_0 failed to run on host node094.
201112-22:15:54,785 nipype.workflow ERROR:
	 Saving crash info to /outputs/crash/crash-20201112-221554-av2902-anat_template_edge_0-3207c2f7-5843-422d-ae2f-f04450b1ff48.pklz
Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 521, in run
    runtime = self._run_interface(runtime)
  File "/code/CPAC/utils/interfaces/function.py", line 152, in _run_interface
    out = function_handle(**args)
  File "/code/CPAC/qc/qc.py", line 451, in afni_Edge3
    return os.path.abspath('./skull_edge.nii.gz')
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 44, in run
    node.run(updatehash=updatehash)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 471, in run
    result = self._run_interface(execute=True)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 555, in _run_interface
    return self._run_command(execute)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_command
    result = self._interface.run(cwd=outdir)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 569, in run
    vals = np.loadtxt(mon_sp.fname, delimiter=',')
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/npyio.py", line 962, in loadtxt
    fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 265, in open
    ds = DataSource(destpath)
  File "/usr/local/miniconda/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 322, in __init__
    self._destpath = os.path.abspath(destpath)
  File "/usr/local/miniconda/lib/python3.7/posixpath.py", line 383, in abspath
    cwd = os.getcwd()
FileNotFoundError: [Errno 2] No such file or directory

201112-22:15:54,797 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.check_for_s3_acpc_template_brain" in "/outputs/tmp/resting_preproc_sub-026_ses-3/check_for_s3_acpc_template_brain".
201112-22:15:54,805 nipype.workflow INFO:
	 [Node] Running "check_for_s3_acpc_template_brain" ("CPAC.utils.interfaces.function.Function")
201112-22:15:55,34 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.check_for_s3_acpc_template_brain".
201112-22:15:55,48 nipype.workflow INFO:
	 [Node] Setting-up "resting_preproc_sub-026_ses-3.check_for_s3_acpc_template_skull" in "/outputs/tmp/resting_preproc_sub-026_ses-3/check_for_s3_acpc_template_skull".
201112-22:15:55,54 nipype.workflow INFO:
	 [Node] Running "check_for_s3_acpc_template_skull" ("CPAC.utils.interfaces.function.Function")
201112-22:15:55,284 nipype.workflow INFO:
	 [Node] Finished "resting_preproc_sub-026_ses-3.check_for_s3_acpc_template_skull".
201112-22:15:55,286 nipype.workflow INFO:
	 ***********************************
201112-22:15:55,286 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.edit_func_0.func_get_idx.b8
201112-22:15:55,286 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221524-av2902-func_get_idx.b8-da1401b1-67e9-436d-82f7-93ba38731f95.pklz
201112-22:15:55,286 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.sinker_0_raw_functional.b8
201112-22:15:55,287 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221525-av2902-sinker_0_raw_functional.b8-d3fc8914-590e-4da7-87a4-812e835bf4a2.pklz
201112-22:15:55,287 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan.b8
201112-22:15:55,287 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221525-av2902-check_func_scan.b8-ad7897ae-a1d8-48d9-935a-93f6a93dbc18.pklz
201112-22:15:55,287 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.check_for_s3.b7
201112-22:15:55,287 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221526-av2902-check_for_s3.b7-2d078c4e-7134-4c2e-bbde-5a9f7fb02da3.pklz
201112-22:15:55,287 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan.b7
201112-22:15:55,287 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221527-av2902-check_func_scan.b7-3fe9020c-c9b0-4209-bb44-5d28971fa04e.pklz
201112-22:15:55,288 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params.b6
201112-22:15:55,288 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221527-av2902-select_scan_params.b6-50adcc1d-4260-4a58-8f4c-43b203b0ab52.pklz
201112-22:15:55,288 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.selectrest.b6
201112-22:15:55,288 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221527-av2902-selectrest.b6-88e73345-9cbe-4b9d-89a9-4b938fc7fc99.pklz
201112-22:15:55,288 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan.b6
201112-22:15:55,289 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221527-av2902-check_func_scan.b6-643a6816-0e8e-47da-a7af-09b54165d575.pklz
201112-22:15:55,289 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params.b5
201112-22:15:55,290 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221528-av2902-select_scan_params.b5-38d8b4fe-89af-4623-a133-53ae1599e3da.pklz
201112-22:15:55,290 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.selectrest.b5
201112-22:15:55,290 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221528-av2902-selectrest.b5-d1536989-050e-4304-8a7c-2143a2e8417b.pklz
201112-22:15:55,290 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan.b5
201112-22:15:55,290 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221528-av2902-check_func_scan.b5-f9e1de15-1c2a-40ef-bfdd-be2e4d56ffa9.pklz
201112-22:15:55,291 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params.b4
201112-22:15:55,291 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221528-av2902-select_scan_params.b4-c3ac09c3-7ffc-4e0d-b072-f67489ba9e03.pklz
201112-22:15:55,291 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.selectrest.b4
201112-22:15:55,291 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221529-av2902-selectrest.b4-998f56dc-9a7c-49b5-a610-35dfb87cabba.pklz
201112-22:15:55,291 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan.b4
201112-22:15:55,292 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221529-av2902-check_func_scan.b4-0997fc0b-2917-4300-81bd-c376d78462ee.pklz
201112-22:15:55,292 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.check_for_s3.b3
201112-22:15:55,292 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221530-av2902-check_for_s3.b3-20a366da-bb5c-451d-a09d-5606b754e8c3.pklz
201112-22:15:55,292 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan.b3
201112-22:15:55,292 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221530-av2902-check_func_scan.b3-7796b93f-e8cd-4d85-8232-dc16d6107c5e.pklz
201112-22:15:55,293 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params.b2
201112-22:15:55,293 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221531-av2902-select_scan_params.b2-7d6acfb9-e592-4510-a1df-31a2b0e11008.pklz
201112-22:15:55,293 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.selectrest.b2
201112-22:15:55,293 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221531-av2902-selectrest.b2-3ebcd5e1-1d2b-4d3a-a7f1-5669f8b2ba9b.pklz
201112-22:15:55,293 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan.b2
201112-22:15:55,293 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221531-av2902-check_func_scan.b2-97a54684-a9af-446a-a7bb-affbc0323a30.pklz
201112-22:15:55,294 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params.b1
201112-22:15:55,294 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221532-av2902-select_scan_params.b1-26aa62ad-bb89-430f-b9ad-ac6549644387.pklz
201112-22:15:55,294 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.selectrest.b1
201112-22:15:55,294 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221532-av2902-selectrest.b1-698f15c9-eea7-49f8-b361-30c76e975951.pklz
201112-22:15:55,294 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan.b1
201112-22:15:55,294 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221533-av2902-check_func_scan.b1-a4f55769-6b2a-45aa-bff7-8273c7cac44e.pklz
201112-22:15:55,295 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.select_scan_params.b0
201112-22:15:55,295 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221533-av2902-select_scan_params.b0-95cba77b-fae9-42ed-b4bf-c9d1315d076e.pklz
201112-22:15:55,296 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.selectrest.b0
201112-22:15:55,296 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221533-av2902-selectrest.b0-2dc8e5cb-c2b7-4846-aaee-216c585303fb.pklz
201112-22:15:55,296 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.func_gather_0.check_func_scan.b0
201112-22:15:55,296 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221533-av2902-check_func_scan.b0-051245a2-7e1c-427f-94b9-07b3b089ba7c.pklz
201112-22:15:55,296 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.roi_dataflow_0.check_for_s3.a1
201112-22:15:55,296 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221534-av2902-check_for_s3.a1-f13a93ea-5c6d-4d45-a8f9-657771feb81b.pklz
201112-22:15:55,297 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.roi_dataflow_0.check_for_s3.a0
201112-22:15:55,297 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221534-av2902-check_for_s3.a0-02d9f09b-3705-456d-a534-e5e80bcd16ab.pklz
201112-22:15:55,297 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.anat_preproc_niworkflows_ants_0.anat_preproc_niworkflows_ants_0_skullstrip.anat_skullstrip_ants.lap_tmpl
201112-22:15:55,297 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221539-av2902-lap_tmpl-363cbf2f-65d4-4c06-a9c9-51b95d378023.pklz
201112-22:15:55,298 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.anat_preproc_niworkflows_ants_0.anat_deoblique
201112-22:15:55,298 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221545-av2902-anat_deoblique-a0ccd604-d541-4b38-8945-134a58831763.pklz
201112-22:15:55,299 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.montage_mfi_0.resample_o
201112-22:15:55,299 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221547-av2902-resample_o-9f9820c9-c26e-4c4a-8671-3ba5fabc5d09.pklz
201112-22:15:55,299 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.resampled_template_skull_for_func_derivative
201112-22:15:55,299 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221548-av2902-resampled_template_skull_for_func_derivative-7faf7cd8-f8a0-476a-84a7-ea0609268508.pklz
201112-22:15:55,299 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.resampled_template_skull_for_func_preproc
201112-22:15:55,299 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221549-av2902-resampled_template_skull_for_func_preproc-d990e452-b918-4f2a-9bd8-af9267ce50dc.pklz
201112-22:15:55,299 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.resampled_template_skull_for_anat
201112-22:15:55,299 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221550-av2902-resampled_template_skull_for_anat-87f1e702-bd3e-4a8a-a77b-0cf24cdf3361.pklz
201112-22:15:55,300 nipype.workflow ERROR:
	 could not run node: resting_preproc_sub-026_ses-3.anat_template_edge_0
201112-22:15:55,300 nipype.workflow INFO:
	 crashfile: /outputs/crash/crash-20201112-221554-av2902-anat_template_edge_0-3207c2f7-5843-422d-ae2f-f04450b1ff48.pklz
201112-22:15:55,300 nipype.workflow INFO:
	 ***********************************
201112-22:15:55,321 nipype.workflow INFO:
	 

Error of subject workflow resting_preproc_sub-026_ses-3

CPAC run error:

    Pipeline configuration: cpac_fmriprep-options
    Subject workflow: resting_preproc_sub-026_ses-3
    Elapsed run time (minutes): 0.647020161151886
    Timing information saved in /outputs/log/cpac_individual_timing_cpac_fmriprep-options.csv
    System time of start:      2020-11-12 22:15:18


Traceback (most recent call last):
  File "/code/CPAC/pipeline/cpac_pipeline.py", line 417, in run_workflow
    workflow.run(plugin=plugin, plugin_args=plugin_args)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/workflows.py", line 595, in run
    runner.run(execgraph, updatehash=updatehash, config=self.config)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 61, in run
    report_nodes_not_run(notrun)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/tools.py", line 82, in report_nodes_not_run
    raise RuntimeError(('Workflow did not execute cleanly. '
RuntimeError: Workflow did not execute cleanly. Check log for details
Traceback (most recent call last):
  File "/code/CPAC/pipeline/cpac_pipeline.py", line 417, in run_workflow
    workflow.run(plugin=plugin, plugin_args=plugin_args)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/workflows.py", line 595, in run
    runner.run(execgraph, updatehash=updatehash, config=self.config)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 61, in run
    report_nodes_not_run(notrun)
  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/tools.py", line 82, in report_nodes_not_run
    raise RuntimeError(('Workflow did not execute cleanly. '
RuntimeError: Workflow did not execute cleanly. Check log for details